Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 114 of 352
Found at i:36525197 original size:35 final size:37
Alignment explanation
Indices: 36525139--36525229 Score: 141
Period size: 35 Copynumber: 2.5 Consensus size: 37
36525129 AATCATATCT
*
36525139 TCTAAGATTGTATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCACA
36525176 TCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCACA
36525212 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
36525230 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.38
36 15 0.30
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCACA
Found at i:36525208 original size:14 final size:15
Alignment explanation
Indices: 36525153--36525208 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
36525143 AGATTGTATA
36525153 TCATATCTAAGATTG
1 TCATATCTAAGATTG
36525168 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
36525186 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
36525203 -CATATC
1 TCATATC
36525209 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:36526081 original size:207 final size:207
Alignment explanation
Indices: 36525624--36527368 Score: 3026
Period size: 207 Copynumber: 8.4 Consensus size: 207
36525614 AAATCTGCTT
* * * *
36525624 CTTCAATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* * * *
36525689 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAATGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * ** * *
36525754 GGATCTAT--TTCAGTCTAATCATTTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTCGAATA
131 GGATCT-TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATA
*
36525817 TGGAGATGCCAAA
195 TGGAGACGCCAAA
*
36525830 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* *
36525895 GTGAAAGCCAATTCAGCTATGTCTTCGATTTGTTCCTTGTATGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
36525960 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAAATCTGCTATGTGTCTGGCTTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
*
36526025 GGTGACGCCAAA
196 GGAGACGCCAAA
36526037 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
36526102 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
36526167 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
36526232 GGAGACGCCAAA
196 GGAGACGCCAAA
* *
36526244 CTTCAATTTGTTCTCTGACAATAGAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
36526309 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
36526374 GGATATTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTACCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
36526439 GGAGACGCCAAA
196 GGAGACGCCAAA
* * * *
36526451 ATTTGATTTGTTCTCTGATAATACAGAGATGTCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
36526516 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
36526581 GGATCTTTCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGGCTTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
*
36526646 GGTGACGCCAAA
196 GGAGACGCCAAA
36526658 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
36526723 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
36526788 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTACCCTCTGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
36526853 GGAGACGCCAAA
196 GGAGACGCCAAA
36526865 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
36526930 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
36526995 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
36527060 GGAGACGCCAAA
196 GGAGACGCCAAA
*
36527072 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
36527137 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
36527202 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
36527267 GGAGACGCCAAA
196 GGAGACGCCAAA
* * * *
36527279 ATTTGATTTGTTCTCTGATAATACAGAGATGTCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
36527344 GTGAAAGCCAAATCAGCTATGTCTT
66 GTGAAAGCCAAATCAGCTATGTCTT
36527369 GGTCTATTAC
Statistics
Matches: 1463, Mismatches: 74, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
205 1 0.00
206 125 0.09
207 1337 0.91
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:36527726 original size:44 final size:44
Alignment explanation
Indices: 36527589--36527730 Score: 114
Period size: 44 Copynumber: 3.3 Consensus size: 44
36527579 ATCTTCTCCA
* * *
36527589 CTACTGCTTAAGGAGAATAAGATTTGCAAATTTAACCTATTACC
1 CTACTGCTTAGGGAGAATAAGATCTGCAAATTTAACCTGTTACC
* * * * ** ** * *
36527633 TTATTGCTTAGGG-GATTAAGGTGGGTC---TTCGATCTGCT-CC
1 CTACTGCTTAGGGAGAATAAGATCTG-CAAATTTAACCTGTTACC
36527673 ACTACTGCTTAGGGAGAATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGAATAAGATCTGCAAATTTAACCTGTTACC
36527718 CTACTGCTTAGGG
1 CTACTGCTTAGGG
36527731 GATTAAGGCG
Statistics
Matches: 69, Mismatches: 22, Indels: 14
0.66 0.21 0.13
Matches are distributed among these distances:
40 2 0.03
41 18 0.26
42 8 0.12
43 8 0.12
44 31 0.45
45 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (44 bp):
CTACTGCTTAGGGAGAATAAGATCTGCAAATTTAACCTGTTACC
Found at i:36527738 original size:85 final size:85
Alignment explanation
Indices: 36527375--36527740 Score: 442
Period size: 85 Copynumber: 4.3 Consensus size: 85
36527365 TCTTGGTCTA
* * * *
36527375 TTACCCTACTGCTTAGGGG-TTAAGGTGCATCATCTTCGATTTGCTCCGCTACTGCTTAGGGA-A
1 TTACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
*
36527438 AGAAGATCTGCAAATTTAACCTG
63 ATAAGATCTGCAAATTTAACCTG
* * **
36527461 TTACCCTACTGCTTAGGGGATGAATGCGAGTCATCATCGATCTGCTCTGCTACTGCTTAGGGAG-
1 TTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGA
* *
36527525 ATAAGATCTGC-----GAACCTT
63 ATAAGATCTGCAAATTTAACCTG
* * *
36527543 TTACCCTACTGCTTAGGGGATTAAGACGAGTCTTCGATCTTCTCCACTACTGCTTAAGGAGAATA
1 TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAATA
* *
36527608 AGATTTGCAAATTTAACCTA
66 AGATCTGCAAATTTAACCTG
* * * *
36527628 TTACCTTATTGCTTAGGGGATTAAGGTGGGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAATA
1 TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAATA
36527693 AGATCTGCAAATTTAACCTG
66 AGATCTGCAAATTTAACCTG
36527713 TTACCCTACTGCTTAGGGGATTAAGGCG
1 TTACCCTACTGCTTAGGGGATTAAGGCG
36527741 CTGAATTTTG
Statistics
Matches: 238, Mismatches: 31, Indels: 23
0.82 0.11 0.08
Matches are distributed among these distances:
79 24 0.10
80 10 0.04
81 1 0.00
82 34 0.14
84 2 0.01
85 107 0.45
86 20 0.08
87 40 0.17
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.31
Consensus pattern (85 bp):
TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAATA
AGATCTGCAAATTTAACCTG
Found at i:36529941 original size:27 final size:27
Alignment explanation
Indices: 36529910--36530087 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36529900 TAAATTGTAC
36529910 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36529937 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36529963 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36529991 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36530019 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36530046 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36530073 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36530088 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36530024 original size:82 final size:81
Alignment explanation
Indices: 36529911--36530066 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36529901 AAATTGTACA
* *
36529911 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36529975 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36529992 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36530057 TGCGAGTTGA
65 TGCGAATTGA
36530067 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36530078 original size:82 final size:81
Alignment explanation
Indices: 36529907--36530087 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
36529897 GATTAAATTG
* *
36529907 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36529972 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36529988 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36530052 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36530070 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36530088 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36538115 original size:35 final size:35
Alignment explanation
Indices: 36538057--36538244 Score: 322
Period size: 35 Copynumber: 5.3 Consensus size: 35
36538047 AATCATATCT
36538057 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
36538094 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
36538129 TCTAAGATTGTATCATATTTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
36538164 TCTAAGATTGTATCATAGCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
36538199 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
36538235 TCTAAGATTG
1 TCTAAGATTG
36538245 CATATCATTG
Statistics
Matches: 145, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
35 120 0.83
36 15 0.10
37 10 0.07
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:36538260 original size:17 final size:18
Alignment explanation
Indices: 36538057--36538249 Score: 106
Period size: 17 Copynumber: 10.8 Consensus size: 18
36538047 AATCATATCT
* *
36538057 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATAT-ACA
*
36538076 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
36538094 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
36538111 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
36538129 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
* *
36538146 TTTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
36538164 TCTAAGATTG--TAT-CA
1 TCTAAGATTGCATATACA
*
36538179 TAGCTAAGATTGCA-ATCATA
1 T--CTAAGATTGCATAT-ACA
*
36538199 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
36538216 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATAT-ACA
36538235 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
36538250 CATTGAAGAT
Statistics
Matches: 152, Mismatches: 6, Indels: 32
0.80 0.03 0.17
Matches are distributed among these distances:
15 2 0.01
17 58 0.38
18 58 0.38
19 32 0.21
20 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCATATACA
Found at i:36543989 original size:67 final size:67
Alignment explanation
Indices: 36543906--36544093 Score: 315
Period size: 67 Copynumber: 2.8 Consensus size: 67
36543896 TACTATGTGT
36543906 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAA
1 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAA
36543971 GG
66 GG
*
36543973 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTGGGTCGCATGCGTGGTTCCAGGTGAA
1 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAA
36544038 GG
66 GG
* * * * *
36544040 ACACCATGTAGACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGGT
1 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGT
36544094 ACTAAGTGTT
Statistics
Matches: 114, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
66 17 0.15
67 97 0.85
ACGTcount: A:0.29, C:0.18, G:0.32, T:0.21
Consensus pattern (67 bp):
ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAA
GG
Found at i:36548653 original size:30 final size:30
Alignment explanation
Indices: 36548617--36548681 Score: 130
Period size: 30 Copynumber: 2.2 Consensus size: 30
36548607 CTTTCTAGAT
36548617 TAGATTATCACTATACATCCAACACATATA
1 TAGATTATCACTATACATCCAACACATATA
36548647 TAGATTATCACTATACATCCAACACATATA
1 TAGATTATCACTATACATCCAACACATATA
36548677 TAGAT
1 TAGAT
36548682 ATTTATTCGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.43, C:0.22, G:0.05, T:0.31
Consensus pattern (30 bp):
TAGATTATCACTATACATCCAACACATATA
Found at i:36551711 original size:14 final size:15
Alignment explanation
Indices: 36551687--36551715 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36551677 TACTAATTAC
36551687 TATATTAACCTTTAA
1 TATATTAACCTTTAA
36551702 TATA-TAACCTTTAA
1 TATATTAACCTTTAA
36551716 AGCCATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (15 bp):
TATATTAACCTTTAA
Found at i:36560946 original size:13 final size:13
Alignment explanation
Indices: 36560928--36560952 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36560918 AGGCCGTGTG
36560928 AGGGACATGGGCC
1 AGGGACATGGGCC
36560941 AGGGACATGGGC
1 AGGGACATGGGC
36560953 GTGTGCTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.48, T:0.08
Consensus pattern (13 bp):
AGGGACATGGGCC
Found at i:36565485 original size:22 final size:22
Alignment explanation
Indices: 36565457--36565503 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
36565447 AGCCAATTTG
*
36565457 TACCTAGCCATTTAGCTTATCT
1 TACCTAGCAATTTAGCTTATCT
*
36565479 TACCTAGCAATTTTGCTTATCT
1 TACCTAGCAATTTAGCTTATCT
36565501 TAC
1 TAC
36565504 ACATTCAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.23, C:0.26, G:0.09, T:0.43
Consensus pattern (22 bp):
TACCTAGCAATTTAGCTTATCT
Found at i:36569899 original size:22 final size:22
Alignment explanation
Indices: 36569856--36569899 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
36569846 AGCATTTACA
*
36569856 ATTTCATTAACAGGTCAGAAAT
1 ATTTCATTAACAAGTCAGAAAT
*
36569878 ATTTCATATAACAATTCA-AAAT
1 ATTTCAT-TAACAAGTCAGAAAT
36569900 TTATATATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (22 bp):
ATTTCATTAACAAGTCAGAAAT
Found at i:36572649 original size:43 final size:43
Alignment explanation
Indices: 36572601--36572694 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
36572591 AAGACACAAG
* *
36572601 CGTGTGTCTCAACCGTGTGCGACACACGGCTATGTTGGACGGT
1 CGTGTGTCTCAACCGTGTGCAACACACGGCTATGTTGCACGGT
* * *
36572644 CGTGTGTCTCAGCCGTGTGTAACACATGGCTATGTTGCACGGT
1 CGTGTGTCTCAACCGTGTGCAACACACGGCTATGTTGCACGGT
36572687 CGTGTGTC
1 CGTGTGTC
36572695 CCTTGGGGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.15, C:0.24, G:0.32, T:0.29
Consensus pattern (43 bp):
CGTGTGTCTCAACCGTGTGCAACACACGGCTATGTTGCACGGT
Found at i:36575860 original size:40 final size:40
Alignment explanation
Indices: 36575815--36576433 Score: 520
Period size: 39 Copynumber: 15.7 Consensus size: 40
36575805 CACCAACACA
* * * * *
36575815 AAGCCTACGGGACTTTAAGCTCGGATATAGTACCAGTACG
1 AAGCCTGCGGGACTTTAAGCTCGGATACAATTCCAGCACG
* * * * *
36575855 AAGCCTGC-GGACCTTAAG-TCCGAATATAGTACCAGCACG
1 AAGCCTGCGGGACTTTAAGCT-CGGATACAATTCCAGCACG
*
36575894 AAGCCTAC-GGA-TCTTAAG-TCCGGATACAATTCCAGCACG
1 AAGCCTGCGGGACT-TTAAGCT-CGGATACAATTCCAGCACG
* * * *
36575933 AAGCTTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACG
1 AAGCCTGCGGGACTTTAAGCTCGGATACAATTCCAGCACG
* * *
36575973 AAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACG
1 AAGCCTGCGGGACTTTAAGCTCGGATACAATTCCAGCACG
* * *
36576013 AAGCCTGC-GGACCTTAAG-TCTGGATACAATTCTAGCACA
1 AAGCCTGCGGGACTTTAAGCTC-GGATACAATTCCAGCACG
* * * *
36576052 AAGCTTGCGGGTCTTTAAGCCCGGATATAATTCCAG--CG
1 AAGCCTGCGGGACTTTAAGCTCGGATACAATTCCAGCACG
* * * *
36576090 TATAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAACACG
1 -A-AGCCTGCGGGACTTTAAGCTCGGATACAATTCCAGCACG
* * *
36576132 AAGCTTGC-GGACCTTAAGTTCGGATACAATTCCAGCACG
1 AAGCCTGCGGGACTTTAAGCTCGGATACAATTCCAGCACG
* * * * *
36576171 AAGCCTGTGGGTCTTTAAGCCCGGATACAATTCTAGCATG
1 AAGCCTGCGGGACTTTAAGCTCGGATACAATTCCAGCACG
* *
36576211 AAGCCTGC-GGACCTTAAG-TCCGGATACAATTCCAGCACA
1 AAGCCTGCGGGACTTTAAGCT-CGGATACAATTCCAGCACG
* * * *
36576250 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCA-T
1 AAGCCTGCGGGACTTTAAGCTCGGATACAATTCCAGCACG
* * *
36576289 ATAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACG
1 A-AGCCTGCGGGACTTTAAGCTCGGATACAATTCCAGCACG
* * * *
36576330 AAGCTTG-TGGACCTTAAG-TCCGGATACAATTCCAGCATG
1 AAGCCTGCGGGACTTTAAGCT-CGGATACAATTCCAGCACG
* * *
36576369 AAGCTTGC-GGACCTTAAG-TCCGGATACAATTCCAACACG
1 AAGCCTGCGGGACTTTAAGCT-CGGATACAATTCCAGCACG
*
36576408 AAGCCTGC-GGACCTTAAG-TCCGGATA
1 AAGCCTGCGGGACTTTAAGCT-CGGATA
36576434 TACATCAAAT
Statistics
Matches: 485, Mismatches: 74, Indels: 41
0.81 0.12 0.07
Matches are distributed among these distances:
38 3 0.01
39 247 0.51
40 229 0.47
41 4 0.01
42 2 0.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
AAGCCTGCGGGACTTTAAGCTCGGATACAATTCCAGCACG
Found at i:36575972 original size:79 final size:79
Alignment explanation
Indices: 36575886--36576417 Score: 615
Period size: 79 Copynumber: 6.7 Consensus size: 79
36575876 GAATATAGTA
* *
36575886 CCAGCACGAAGCCTACGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCTTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
*
36575951 GCCCAGATACAATT
66 GCCCGGATACAATT
* * * * *
36575965 CCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGC-GGACCTTA
1 CCAGCACGAAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTA
* *
36576029 AGTCTGGATACAATT
65 AGCCCGGATACAATT
* * * * * *
36576044 CTAGCACAAAGCTTGCGGGTCTTTAAGCCCGGATATAATTCCAG--CGTATAGCCTGCGGGTCTT
1 CCAGCACGAAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGCACG-A-AGCCTGCGGGTCTT
*
36576107 TAAGCCCAGATACAATT
63 TAAGCCCGGATACAATT
* * * * *
36576124 CCAACACGAAGCTTGCGGACCTTAAGTTCGGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
36576189 GCCCGGATACAATT
66 GCCCGGATACAATT
* * * *
36576203 CTAGCATGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
*
36576268 GCCCGGATATAATT
66 GCCCGGATACAATT
* * * * * * * *
36576282 CCAGCA-TATAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCTTG-TGGACCTT
1 CCAGCACGA-AGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTT
*
36576345 AAGTCCGGATACAATT
64 AAGCCCGGATACAATT
* * * *
36576361 CCAGCATGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAACACGAAGCCTGCGG
1 CCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGG
36576418 ACCTTAAGTC
Statistics
Matches: 383, Mismatches: 60, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
77 2 0.01
78 32 0.08
79 249 0.65
80 98 0.26
81 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (79 bp):
CCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
GCCCGGATACAATT
Found at i:36576018 original size:119 final size:119
Alignment explanation
Indices: 36575815--36576417 Score: 696
Period size: 119 Copynumber: 5.1 Consensus size: 119
36575805 CACCAACACA
* * * * * * * * * *
36575815 AAGCCTACGGGACTTTAAGCTCGGATATAGTACCAGTACGAAGCCTG-CGGACCTTAAGTCCGAA
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGTGGGACCTTAAGCCCGGA
* * * * *
36575879 TATAGTACCAGCACGAAGCCTACGGATCTTAAGTCCGGATACAATTCCAGCACG
66 TACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * * *
36575933 AAGCTTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGA
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGTGGGACCTTAAGCCCGGA
* * *
36575998 TACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCTGGATACAATTCTAGCACA
66 TACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * * * * *
36576052 AAGCTTGCGGGTCTTTAAGCCCGGATATAATTCCAG--CGTATAGCCTGCGGGTCTTTAAGCCCA
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG-A-AGCCTGTGGGACCTTAAGCCCG
* * *
36576115 GATACAATTCCAACACGAAGCTTGCGGACCTTAAGTTCGGATACAATTCCAGCACG
64 GATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * * * *
36576171 AAGCCTGTGGGTCTTTAAGCCCGGATACAATTCTAGCATGAAGCCTG-CGGACCTTAAGTCCGGA
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGTGGGACCTTAAGCCCGGA
* * * * * *
36576235 TACAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCA-T
66 TACAATTCCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
* * *
36576289 ATAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCTTGT-GGACCTTAAGTCCGG
1 A-AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGTGGGACCTTAAGCCCGG
* * *
36576353 ATACAATTCCAGCATGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAACACG
65 ATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
36576408 AAGCCTGCGG
1 AAGCCTGCGG
36576418 ACCTTAAGTC
Statistics
Matches: 412, Mismatches: 64, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
117 2 0.00
118 104 0.25
119 304 0.74
120 1 0.00
121 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (119 bp):
AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGTGGGACCTTAAGCCCGGA
TACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
Found at i:36576261 original size:198 final size:198
Alignment explanation
Indices: 36575907--36576433 Score: 833
Period size: 198 Copynumber: 2.7 Consensus size: 198
36575897 CCTACGGATC
* * * * *
36575907 TTAAGTCCGGATACAATTCCAGCACGAAGCTTGCGGGTCTTTAAGCCCAGATACAATTCCAGCAC
1 TTAAGCCCGGATACAATTCCAGCACGAAGCTTGC-GGACCTTAAGTCCGGATACAATTCCAGCAC
*
36575972 GAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCTGGA
65 GAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
* * *
36576037 TACAATTCTAGCACAAAGCTTGCGGGTCTTTAAGCCCGGATATAATTCCAGCGTATAGCCTGCGG
130 TACAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCATATAGCCTGCGG
36576102 GTCT
195 GTCT
* * *
36576106 TTAAGCCCAGATACAATTCCAACACGAAGCTTGCGGACCTTAAGTTCGGATACAATTCCAGCACG
1 TTAAGCCCGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* *
36576171 AAGCCTGTGGGTCTTTAAGCCCGGATACAATTCTAGCATGAAGCCTGCGGACCTTAAGTCCGGAT
66 AAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
*
36576236 ACAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCATATAGCCTGTGGG
131 ACAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGG
36576301 TCT
196 TCT
* *
36576304 TTAAGCCCGGATACAATTCCAGCACGAAGCTTGTGGACCTTAAGTCCGGATACAATTCCAGCATG
1 TTAAGCCCGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * * *
36576369 AAG-CT-TGCGGACCTTAAGTCCGGATACAATTCCAACACGAAGCCTGCGGACCTTAAGTCCGGA
66 AAGCCTGTG-GGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
36576432 TA
130 TA
36576434 TACATCAAAT
Statistics
Matches: 301, Mismatches: 26, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
196 2 0.01
197 53 0.18
198 215 0.71
199 31 0.10
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (198 bp):
TTAAGCCCGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
AAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
ACAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGG
TCT
Found at i:36582506 original size:14 final size:15
Alignment explanation
Indices: 36582482--36582510 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36582472 TACTAATTAC
36582482 TATATTAACCTTTAA
1 TATATTAACCTTTAA
36582497 TATA-TAACCTTTAA
1 TATATTAACCTTTAA
36582511 AGCCATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (15 bp):
TATATTAACCTTTAA
Found at i:36587524 original size:20 final size:21
Alignment explanation
Indices: 36587501--36587544 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
36587491 TAAATGATTT
* *
36587501 TAATTTTTTTTGA-ATTTTTA
1 TAATTTTATTTAACATTTTTA
36587521 TAATTTTATTTAACATTTTTA
1 TAATTTTATTTAACATTTTTA
36587542 TAA
1 TAA
36587545 AATTTAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (21 bp):
TAATTTTATTTAACATTTTTA
Found at i:36587599 original size:24 final size:26
Alignment explanation
Indices: 36587552--36587599 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
36587542 TAAAATTTAA
*
36587552 TAATATTTTATAAATATATAAAAAAT
1 TAATATTTTATAAATATAAAAAAAAT
*
36587578 TAATTTTTTA-AAAT-TAAAAAAA
1 TAATATTTTATAAATATAAAAAAA
36587600 TAAAATGAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 4 0.20
26 9 0.45
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
TAATATTTTATAAATATAAAAAAAAT
Found at i:36589855 original size:17 final size:17
Alignment explanation
Indices: 36589833--36589867 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
36589823 AGCCACCCAA
36589833 ATGAAAATATGTAGATG
1 ATGAAAATATGTAGATG
36589850 ATGAAAATATGTAGATG
1 ATGAAAATATGTAGATG
36589867 A
1 A
36589868 GCTGACATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.23, T:0.29
Consensus pattern (17 bp):
ATGAAAATATGTAGATG
Found at i:36594583 original size:31 final size:31
Alignment explanation
Indices: 36594542--36594605 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
36594532 TGATAAAATC
*
36594542 AATCAGAAAAATGAATTTATCTACACGAACA
1 AATCAAAAAAATGAATTTATCTACACGAACA
36594573 AATCAAAAAAATGAATTTATCTACACGAACA
1 AATCAAAAAAATGAATTTATCTACACGAACA
36594604 AA
1 AA
36594606 GATATCTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.55, C:0.16, G:0.08, T:0.22
Consensus pattern (31 bp):
AATCAAAAAAATGAATTTATCTACACGAACA
Found at i:36596432 original size:46 final size:46
Alignment explanation
Indices: 36596375--36596650 Score: 471
Period size: 46 Copynumber: 6.0 Consensus size: 46
36596365 TTTCTGTCAT
** * * *
36596375 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
**
36596421 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
*
36596467 GTTGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
36596513 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
36596559 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
*
36596605 GTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
36596651 AGAGCACACT
Statistics
Matches: 222, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 222 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
Found at i:36598752 original size:17 final size:17
Alignment explanation
Indices: 36598732--36598765 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
36598722 AATTTTCCCC
*
36598732 TTTTTCCTTCTTTCTTT
1 TTTTTCCTTCCTTCTTT
36598749 TTTTTCCTTCCTTCTTT
1 TTTTTCCTTCCTTCTTT
36598766 CTTTCCCCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTCCTTCCTTCTTT
Found at i:36606363 original size:27 final size:27
Alignment explanation
Indices: 36606311--36606364 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
36606301 AGATGAATGA
* *
36606311 TTTATATCGAAATGATAGAGCTTATGG
1 TTTATATCGAAAGGATAGAGCATATGG
*
36606338 TTTATATCGAAAGGATAGATCATATGG
1 TTTATATCGAAAGGATAGAGCATATGG
36606365 CTATGTTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.35
Consensus pattern (27 bp):
TTTATATCGAAAGGATAGAGCATATGG
Found at i:36609729 original size:15 final size:15
Alignment explanation
Indices: 36609705--36609734 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36609695 CTAATTTATT
36609705 TTTTGAGGTTTCGGC
1 TTTTGAGGTTTCGGC
*
36609720 TTTTGTGGTTTCGGC
1 TTTTGAGGTTTCGGC
36609735 ACAAGTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.33, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGGC
Found at i:36619123 original size:21 final size:21
Alignment explanation
Indices: 36619099--36619143 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
36619089 TGTAGCTCTA
36619099 TTGTCGTCG-ATTATAATTCCC
1 TTGTC-TCGAATTATAATTCCC
* *
36619120 TTGTCTTGAATTATAATTTCC
1 TTGTCTCGAATTATAATTCCC
36619141 TTG
1 TTG
36619144 AGTAGATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (21 bp):
TTGTCTCGAATTATAATTCCC
Found at i:36620375 original size:16 final size:17
Alignment explanation
Indices: 36620354--36620387 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
36620344 AAATATTATG
36620354 AAATAAA-AACAAACAA
1 AAATAAATAACAAACAA
*
36620370 AAATAAATATCAAACAA
1 AAATAAATAACAAACAA
36620387 A
1 A
36620388 CTCCATTCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (17 bp):
AAATAAATAACAAACAA
Found at i:36626739 original size:16 final size:15
Alignment explanation
Indices: 36626709--36626737 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36626699 TGTGTATCTC
36626709 TTTTTTAAATATTTA
1 TTTTTTAAATATTTA
36626724 TTTTTTAAATATTT
1 TTTTTTAAATATTT
36626738 TACTATGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTTAAATATTTA
Found at i:36629052 original size:46 final size:46
Alignment explanation
Indices: 36628976--36629191 Score: 156
Period size: 46 Copynumber: 4.6 Consensus size: 46
36628966 GTAAAGTGTT
* *
36628976 GATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTA-GTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTTA-CATCTC-AAGGCC
* * *
36629024 GATGCATGTCCCAGATATGTCTTACACTGGCTTACGTCTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGACTTACATCTCAAGGCC
* * *
36629070 GATGCATGTCCCAGACATGTCTTACACTAGCTCTTGC--CTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACT-G-ACTTACATCTCAAGGCC
* * * * **
36629116 GATGCCATGTCCCAAACATGGTCTTACATTGGCTCT-CATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACT-TACAT-CTCAAGGCC
* *
36629164 GATGTATATCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
36629192 AGCTCACAAA
Statistics
Matches: 138, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
45 1 0.01
46 70 0.51
47 42 0.30
48 24 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTTACATCTCAAGGCC
Found at i:36634138 original size:65 final size:65
Alignment explanation
Indices: 36634053--36634183 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
36634043 GGTTGAGCAT
*
36634053 ATGACATTGAACTATTATGGATTGATATTGTGACTGAAAATATGTATTTGACTGGTTTCGATTTA
1 ATGAAATTGAACTATTATGGATTGATATTGTGACTGAAAATATGTATTTGACTGGTTTCGATTTA
*
36634118 ATGAAATTGAACTATTATGGATTGATATTGTGACTGAAAATATGTATTTGACTGGTTTTGATTTA
1 ATGAAATTGAACTATTATGGATTGATATTGTGACTGAAAATATGTATTTGACTGGTTTCGATTTA
36634183 A
1 A
36634184 GCATTATTTG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.32, C:0.06, G:0.20, T:0.42
Consensus pattern (65 bp):
ATGAAATTGAACTATTATGGATTGATATTGTGACTGAAAATATGTATTTGACTGGTTTCGATTTA
Found at i:36638662 original size:37 final size:37
Alignment explanation
Indices: 36638603--36638708 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
36638593 AGCTCAGACG
* *
36638603 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
36638640 AAATCTCCACACGTAGTCATCGGGTCTCACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
36638677 AAATCTCCACACGTAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
36638709 AGAATATATT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:36638916 original size:50 final size:50
Alignment explanation
Indices: 36638862--36638958 Score: 151
Period size: 50 Copynumber: 1.9 Consensus size: 50
36638852 ATCGCCTACG
36638862 TATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATATA
* * *
36638912 TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
36638959 TCATCACATT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 2 0.05
50 41 0.95
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.37
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATATA
Found at i:36639015 original size:47 final size:47
Alignment explanation
Indices: 36638916--36639108 Score: 255
Period size: 47 Copynumber: 4.1 Consensus size: 47
36638906 TATATATATT
* * * * *
36638916 TCACATTGACCATTCGGCTTTA-C-CACGTATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTCACATTCA
36638962 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
36639009 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * * **
36639056 TCACATTGGCCATTCGGCCTTATCTCATATATACATATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
36639103 TCACAT
1 TCACAT
36639109 AAAATCCTAA
Statistics
Matches: 135, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
46 20 0.15
47 105 0.78
48 10 0.07
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:36639036 original size:22 final size:22
Alignment explanation
Indices: 36638961--36639079 Score: 59
Period size: 23 Copynumber: 5.1 Consensus size: 22
36638951 TCTCATATTC
36638961 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
36638983 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
36639007 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
36639030 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
36639054 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36639077 ATC
1 ATC
36639080 TCATATATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 18 0.25
23 19 0.27
24 19 0.27
25 15 0.21
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36642026 original size:25 final size:25
Alignment explanation
Indices: 36641989--36642040 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
36641979 AAGGAATTCG
36641989 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
36642014 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
36642039 CA
1 CA
36642041 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:36642260 original size:40 final size:40
Alignment explanation
Indices: 36642216--36642487 Score: 400
Period size: 40 Copynumber: 6.8 Consensus size: 40
36642206 CCATCATGAT
* * *
36642216 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
36642256 TGCTCTACGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
36642296 TGCTCTTCGGAACTTAGCCCAGATACATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
36642336 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
36642376 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
36642416 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
36642456 TGCTCTTCGGGACTTATCCCGAATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
36642488 CTCAATTCTC
Statistics
Matches: 207, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 207 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:36643842 original size:37 final size:38
Alignment explanation
Indices: 36643755--36643864 Score: 186
Period size: 37 Copynumber: 2.9 Consensus size: 38
36643745 AGCTCAGACG
* *
36643755 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
36643793 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGAC-A
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
36643830 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
36643865 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
37 35 0.51
38 33 0.49
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (38 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:36644069 original size:50 final size:50
Alignment explanation
Indices: 36644015--36644111 Score: 142
Period size: 50 Copynumber: 1.9 Consensus size: 50
36644005 ATCGCCTACG
*
36644015 TATTTCACACTAG-CCATTTGGCTTTACCACATATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATATA
* * *
36644065 TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
36644112 TCATCACATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
49 2 0.05
50 40 0.95
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATATA
Found at i:36644164 original size:47 final size:47
Alignment explanation
Indices: 36644069--36644261 Score: 237
Period size: 47 Copynumber: 4.1 Consensus size: 47
36644059 TATATATATT
* * ** * *
36644069 TCACATTGACCATTCGGCTTTA-C-CACGTATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCAT-GCTCACATTCA
* * *
36644115 TCACATTGGCTATTCAGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
*
36644162 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* * **
36644209 TCACATTGGCCATTCGGCCTTATCTCATATATACATATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
36644256 TCACAT
1 TCACAT
36644262 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
46 18 0.14
47 103 0.79
48 10 0.08
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:36644188 original size:22 final size:22
Alignment explanation
Indices: 36644161--36644232 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
36644151 GCTCACATTC
36644161 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
36644183 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
36644207 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36644230 ATC
1 ATC
36644233 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36650211 original size:24 final size:24
Alignment explanation
Indices: 36650184--36650231 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
36650174 TTAACTAATT
36650184 AACTTGACAATAAAACTTGATATA
1 AACTTGACAATAAAACTTGATATA
36650208 AACTTGACAATAAAACTTGATATA
1 AACTTGACAATAAAACTTGATATA
36650232 GCCATTCCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.12, G:0.08, T:0.29
Consensus pattern (24 bp):
AACTTGACAATAAAACTTGATATA
Found at i:36650220 original size:12 final size:13
Alignment explanation
Indices: 36650184--36650227 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
36650174 TTAACTAATT
36650184 AACTTGACAATAA
1 AACTTGACAATAA
*
36650197 AACTTGA-TAT-A
1 AACTTGACAATAA
36650208 AACTTGACAATAA
1 AACTTGACAATAA
36650221 AACTTGA
1 AACTTGA
36650228 TATAGCCATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 8 0.30
12 4 0.15
13 15 0.56
ACGTcount: A:0.50, C:0.14, G:0.09, T:0.27
Consensus pattern (13 bp):
AACTTGACAATAA
Found at i:36657369 original size:28 final size:28
Alignment explanation
Indices: 36657298--36657413 Score: 122
Period size: 24 Copynumber: 4.4 Consensus size: 28
36657288 GATATGACAT
* *
36657298 TGTGCTAAGTGAAATAAGACCAT-G--T
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
36657323 TAT-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
* *
36657350 TGTGCTAATTGAAATGAGTCCATGGC-A
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
36657377 --T-CTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
36657402 TGTGCTAAGTGA
1 TGTGCTAAGTGA
36657414 GAAATTTCCC
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
24 38 0.51
25 4 0.05
27 4 0.05
28 28 0.38
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (28 bp):
TGTGCTAAGTGAAATAAGTCCATGGCAA
Found at i:36657380 original size:52 final size:52
Alignment explanation
Indices: 36657298--36657413 Score: 178
Period size: 52 Copynumber: 2.2 Consensus size: 52
36657288 GATATGACAT
**
36657298 TGTGCTAAGTGAAATAAGACCATGTTATCTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
* * * *
36657350 TGTGCTAATTGAAATGAGTCCATGGCATCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
36657402 TGTGCTAAGTGA
1 TGTGCTAAGTGA
36657414 GAAATTTCCC
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 57 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:36657491 original size:51 final size:51
Alignment explanation
Indices: 36657436--36657634 Score: 287
Period size: 51 Copynumber: 3.9 Consensus size: 51
36657426 TGAACCTTAG
* *
36657436 GAATAAAATAGCTTTAGACACATGTGTGGTACTATGTGAAGGTCC-CTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGG-CCACTTTGT
* * *
36657487 GAATATAATAGCTTTGGACACAAGTGTGGAATTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
36657538 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTCT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
36657589 GAATACAATAGCTTTGG-CTACAAAG-GTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-AC-AAGTGTGGTACTATGTGAAGGCCAC
36657635 CGTGTATCCC
Statistics
Matches: 135, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
50 3 0.02
51 129 0.96
52 3 0.02
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:36663254 original size:52 final size:52
Alignment explanation
Indices: 36663194--36663309 Score: 196
Period size: 52 Copynumber: 2.2 Consensus size: 52
36663184 GATATGACAT
36663194 TGTGCTAAGTGAAATAAGACCATGACATCTAAGTGAAAGAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGACATCTAAGTGAAAGAAGTCCATGGCAA
* * * *
36663246 TGTGCTAAGTGAAATAAGCCCATGGCATCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGACCATGACATCTAAGTGAAAGAAGTCCATGGCAA
36663298 TGTGCTAAGTGA
1 TGTGCTAAGTGA
36663310 GAAATTTCCC
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 60 1.00
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAGACCATGACATCTAAGTGAAAGAAGTCCATGGCAA
Found at i:36663268 original size:28 final size:27
Alignment explanation
Indices: 36663194--36663309 Score: 136
Period size: 24 Copynumber: 4.4 Consensus size: 27
36663184 GATATGACAT
* *
36663194 TGTGCTAAGTGAAATAAGACCATGACA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
*
36663221 --T-CTAAGTGAAAGAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
*
36663246 TGTGCTAAGTGAAATAAGCCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
36663273 --T-CTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
36663297 TTGTGCTAAGTGA
1 -TGTGCTAAGTGA
36663310 GAAATTTCCC
Statistics
Matches: 75, Mismatches: 6, Indels: 15
0.78 0.06 0.16
Matches are distributed among these distances:
24 41 0.55
25 3 0.04
27 3 0.04
28 28 0.37
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:36689145 original size:25 final size:25
Alignment explanation
Indices: 36689134--36689198 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
36689124 TTAACAATAG
36689134 GGGCAAAGCCCTTTTTGATAAACTA
1 GGGCAAAGCCCTTTTTGATAAACTA
* * *
36689159 GGGCAAAGCCCTTTTCGGTAAACTG
1 GGGCAAAGCCCTTTTTGATAAACTA
*
36689184 GGGCATAGCCCTTTT
1 GGGCAAAGCCCTTTT
36689199 AGCACTTCCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (25 bp):
GGGCAAAGCCCTTTTTGATAAACTA
Found at i:36689462 original size:27 final size:27
Alignment explanation
Indices: 36689402--36689640 Score: 299
Period size: 27 Copynumber: 8.9 Consensus size: 27
36689392 GGGCAAAATG
* * *
36689402 GTAATTTTACCC-ACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
36689428 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
36689455 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
36689481 GATAATTCTACCTTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
36689509 GTAATTCTACTCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
36689535 GATAATTCTACCCTACAGGGTTA-TTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
36689562 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
36689588 GATAATTCTGCCCTATAGGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
36689616 GTAATTCTACCCTACAAGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
36689641 TGATATTTTA
Statistics
Matches: 185, Mismatches: 20, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
26 37 0.20
27 146 0.79
28 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:36689477 original size:54 final size:54
Alignment explanation
Indices: 36689402--36689645 Score: 341
Period size: 54 Copynumber: 4.6 Consensus size: 54
36689392 GGGCAAAATG
* * *
36689402 GTAATTTTACCC-ACAAGGGTATCTC-AGTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCA
* *
36689455 GTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
* * *
36689509 GTAATTCTACTCTACAGGGGTATTTCGATAATTCTACCCTACAGGGTTA-TTCA
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
* * * *
36689562 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTGCCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
*
36689616 GTAATTCTACCCTACAAGGGTATTTTGATA
1 GTAATTCTACCCTACAAGGGTATTTCGATA
36689646 TTTTACAAAT
Statistics
Matches: 171, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
53 59 0.35
54 111 0.65
55 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
Found at i:36689571 original size:107 final size:108
Alignment explanation
Indices: 36689402--36689645 Score: 341
Period size: 107 Copynumber: 2.3 Consensus size: 108
36689392 GGGCAAAATG
* * * *
36689402 GTAATTTTACCC-ACAAGGGTATCTC-AGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 GTAATTCTACCCTACAAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
*
36689465 CCTACAAGGGTATTTCGATAATTCTACCTTACAGGGGTATTTCA
65 CCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
* * *
36689509 GTAATTCTACTCTACAGGGGTATTTCGATAATTCTACCCTACAGGGTTA-TTCAGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
* * * *
36689573 CTACAGGGGTATTTCGATAATTCTGCCCTATAGGGGTATTTTA
66 CTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
*
36689616 GTAATTCTACCCTACAAGGGTATTTTGATA
1 GTAATTCTACCCTACAAGGGTATTTCGATA
36689646 TTTTACAAAT
Statistics
Matches: 120, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
107 88 0.73
108 31 0.26
109 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (108 bp):
GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
CTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
Found at i:36689666 original size:80 final size:81
Alignment explanation
Indices: 36689429--36689645 Score: 271
Period size: 80 Copynumber: 2.7 Consensus size: 81
36689419 GGTATCTCAG
** * * *
36689429 TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCT
1 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTGATAATTCTACCA
36689494 TACAGGGGTATTTC-A
66 TACAGGGGTATTTCGA
* * * *
36689509 GTAATTCTACTCTACAGGGGTA-TTTCGATAATTCTACCCTAC-AGGGT-TATTCAGTAATTCTA
1 -TAATTCTACCCTACAGGGGTATTTTAG-TAATTCTACCCTACAAGGGTATTTTGA-TAATTCTA
*
36689571 CCCTACAGGGGTATTTCGA
63 CCATACAGGGGTATTTCGA
* *
36689590 TAATTCTGCCCTATAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTGATA
1 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTGATA
36689646 TTTTACAAAT
Statistics
Matches: 116, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.03
80 64 0.55
81 45 0.39
82 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTGATAATTCTACCA
TACAGGGGTATTTCGA
Found at i:36689687 original size:53 final size:52
Alignment explanation
Indices: 36689629--36689810 Score: 181
Period size: 53 Copynumber: 3.4 Consensus size: 52
36689619 ATTCTACCCT
* *
36689629 ACAAGGGTATTTTGAT-ATTTTACAAATCAAGAGTATTTTGATAATTTCACAA
1 ACAAGGGTATTTTGATAATTTTACAAA-CAAGGGTATTTTGGTAATTTCACAA
* * * *
36689681 ATCAAGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGATAATTTTACAA-ACAAGGGTATTTTGGTAATTTCACAA
* * ***
36689735 ACTAGGGGTATTTT-AGTAATTTTACAAACCAGGGTATTTTGGTAATTTGGTAA
1 AC-AAGGGTATTTTGA-TAATTTTACAAACAAGGGTATTTTGGTAATTTCACAA
36689788 ACCAAGGGTATTTT-AGTAATTTT
1 A-CAAGGGTATTTTGA-TAATTTT
36689811 GTAAATCGAG
Statistics
Matches: 109, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
52 1 0.01
53 55 0.50
54 53 0.49
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (52 bp):
ACAAGGGTATTTTGATAATTTTACAAACAAGGGTATTTTGGTAATTTCACAA
Found at i:36689815 original size:27 final size:27
Alignment explanation
Indices: 36689630--36689810 Score: 213
Period size: 27 Copynumber: 6.8 Consensus size: 27
36689620 TTCTACCCTA
* *
36689630 CAAGGGTATTTTGAT-ATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
36689656 CAAGAGTATTTTGATAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
36689683 CAAGGGTATTTTGGTAATTTTACAAGC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
36689710 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
36689737 TAGGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
***
36689764 C-AGGGTATTTTGGTAATTTGGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
36689790 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
36689811 GTAAATCGAG
Statistics
Matches: 134, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 35 0.26
27 99 0.74
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:36689834 original size:27 final size:27
Alignment explanation
Indices: 36689803--36690051 Score: 318
Period size: 27 Copynumber: 9.2 Consensus size: 27
36689793 GGGTATTTTA
* * *
36689803 GTAATTTTGTAAATCGAGTGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
36689830 ATAATTCTGTAAATCGAGGGTATAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
36689857 GTAATTTTGTAAATCGAGGGTAACACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
36689884 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
36689911 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* ** *
36689938 GTAATTCTATAAATTAATGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
36689965 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* **
36689992 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
36690019 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
36690046 GTAATT
1 GTAATT
36690052 TTACAAATTG
Statistics
Matches: 195, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 195 1.00
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:36690094 original size:27 final size:27
Alignment explanation
Indices: 36689803--36690092 Score: 301
Period size: 27 Copynumber: 10.7 Consensus size: 27
36689793 GGGTATTTTA
* * * * *
36689803 GTAATTTTGTAAATCGAGTGTAAAACG
1 GTAATTCTATAAATTGAGGGTAAAATG
* * * *
36689830 ATAATTCTGTAAATCGAGGGTATAATG
1 GTAATTCTATAAATTGAGGGTAAAATG
* * * * *
36689857 GTAATTTTGTAAATCGAGGGTAACACG
1 GTAATTCTATAAATTGAGGGTAAAATG
* *
36689884 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATTGAGGGTAAAATG
36689911 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATTGAGGGTAAAATG
* *
36689938 GTAATTCTATAAATTAATGGTAAAATG
1 GTAATTCTATAAATTGAGGGTAAAATG
*
36689965 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTATAAATTGAGGGTAAAATG
* **
36689992 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATTGAGGGTAAAATG
* *
36690019 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATTGAGGGTAAAATG
* * * *
36690046 GTAATTTTACAAATTGAGGGCAAAACG
1 GTAATTCTATAAATTGAGGGTAAAATG
* * *
36690073 GTGATTTTACAAATTGAGGG
1 GTAATTCTATAAATTGAGGG
36690093 CATTTCAATA
Statistics
Matches: 229, Mismatches: 34, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 229 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (27 bp):
GTAATTCTATAAATTGAGGGTAAAATG
Found at i:36692495 original size:25 final size:25
Alignment explanation
Indices: 36692465--36692551 Score: 138
Period size: 25 Copynumber: 3.5 Consensus size: 25
36692455 ACAACAGGGA
*
36692465 CAAAGCCCTTTTTGATAAACTGGGG
1 CAAAGCCCTTTTTGGTAAACTGGGG
*
36692490 CAAAGCCTTTTTTGGTAAACTGGGG
1 CAAAGCCCTTTTTGGTAAACTGGGG
*
36692515 CAAAGCCCTTTTCGGTAAACTGGGG
1 CAAAGCCCTTTTTGGTAAACTGGGG
*
36692540 CATAGCCCTTTT
1 CAAAGCCCTTTT
36692552 AGCACTTCCT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 57 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (25 bp):
CAAAGCCCTTTTTGGTAAACTGGGG
Found at i:36692784 original size:27 final size:27
Alignment explanation
Indices: 36692754--36692970 Score: 231
Period size: 27 Copynumber: 8.0 Consensus size: 27
36692744 GGGGCAAAAT
* * *
36692754 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
36692781 GGTAATTCTACCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* *
36692808 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
36692835 AGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
36692862 AGTAATTCTGCCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
36692889 GATAATTCTACCTTAC-AGGGTTATTTT
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
36692916 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
36692943 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
36692970 G
1 G
36692971 ATATTTTACA
Statistics
Matches: 158, Mismatches: 28, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
26 6 0.04
27 146 0.92
28 6 0.04
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:36692817 original size:54 final size:54
Alignment explanation
Indices: 36692754--36692979 Score: 265
Period size: 54 Copynumber: 4.2 Consensus size: 54
36692744 GGGGCAAAAT
* * *
36692754 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGAGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
36692808 GGTATTTTTACCCTACAAGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * * * * * *
36692862 AGTAATTCTGCCCTATAGGGGTATTTCGATAATTCTACCTTACAGGGTTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
36692916 AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
36692970 GAT-ATTTTAC
1 GGTAATTTTAC
36692980 AAATTGAGAG
Statistics
Matches: 147, Mismatches: 25, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
53 6 0.04
54 141 0.96
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:36692914 original size:81 final size:81
Alignment explanation
Indices: 36692755--36692973 Score: 278
Period size: 81 Copynumber: 2.7 Consensus size: 81
36692745 GGGCAAAATG
* * * * * * * * *
36692755 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGAGTATTTCGGTATTTTTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
36692820 CTACAAGGGTATTTCA
66 CTACAAGGGTATTTCA
* * * *
36692836 GTAATTCTACCTTACAGGGGTATTTTAGTAATTCTGCCCTATAGGGGTATTTCGATAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
* *
36692901 TTAC-AGGGTTATTTTA
66 CTACAAGGG-TATTTCA
*
36692917 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATA
36692974 TTTTACAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
80 4 0.03
81 113 0.97
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
CTACAAGGGTATTTCA
Found at i:36692999 original size:26 final size:27
Alignment explanation
Indices: 36692963--36693114 Score: 96
Period size: 27 Copynumber: 5.7 Consensus size: 27
36692953 CCCTACAGGG
*
36692963 GTATTTCGAT-ATTTTACAAATT-GAGA
1 GTATTTTGATAATTTTACAAATTAG-GA
* * *
36692989 GTATTTTGATAATTTCAAAAATTAGGG
1 GTATTTTGATAATTTTACAAATTAGGA
* ***
36693016 GTATTTTGGTAATTTTACAAGCCAAGG-
1 GTATTTTGATAATTTTACAA-ATTAGGA
* * ** *
36693043 GTATTTTGGTAATTTCACAAACCAGGG
1 GTATTTTGATAATTTTACAAATTAGGA
** *
36693070 GTATTTT-AGTAATTTTACAAACCAGGG
1 GTATTTTGA-TAATTTTACAAATTAGGA
*
36693097 GTATTTTGGTAATTTTAC
1 GTATTTTGATAATTTTAC
36693115 TGATCGAGGG
Statistics
Matches: 104, Mismatches: 16, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
26 13 0.12
27 87 0.84
28 4 0.04
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
GTATTTTGATAATTTTACAAATTAGGA
Found at i:36693048 original size:54 final size:54
Alignment explanation
Indices: 36692989--36693111 Score: 183
Period size: 54 Copynumber: 2.3 Consensus size: 54
36692979 CAAATTGAGA
* ** * *
36692989 GTATTTTGATAATTTCAAAAATTAGGGGTATTTTGGTAATTTTACAAGCCAAGG
1 GTATTTTGGTAATTTCAAAAACCAGGGGTATTTTAGTAATTTTACAAACCAAGG
* *
36693043 GTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTCAAAAACCAGGGGTATTTTAGTAATTTTACAAACCAAGG
36693097 GTATTTTGGTAATTT
1 GTATTTTGGTAATTT
36693112 TACTGATCGA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GTATTTTGGTAATTTCAAAAACCAGGGGTATTTTAGTAATTTTACAAACCAAGG
Found at i:36693171 original size:27 final size:27
Alignment explanation
Indices: 36693014--36693167 Score: 182
Period size: 27 Copynumber: 5.7 Consensus size: 27
36693004 CAAAAATTAG
*
36693014 GGGTATTTTGGTAATTTTACAAGCCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
36693041 GGGTATTTTGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
36693068 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
** * *
36693095 GGGTATTTTGGTAATTTTACTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
***
36693122 GGGTATTTTGGTAATTTGGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
36693149 TGGTATTTTAGTAATTTTA
1 GGGTATTTTGGTAATTTTA
36693168 TAAATCGAGG
Statistics
Matches: 105, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:36693180 original size:27 final size:27
Alignment explanation
Indices: 36693095--36693369 Score: 221
Period size: 27 Copynumber: 10.2 Consensus size: 27
36693085 TACAAACCAG
* * *
36693095 GGGTATTTTGGTAATTTTACT-GATCGA
1 GGGTATTATGGTAATTCTA-TAAATCGA
* * * *
36693122 GGGTATTTTGGTAATT-TGGTAAACCAA
1 GGGTATTATGGTAATTCT-ATAAATCGA
* * * *
36693149 TGGTATTTTAGTAATTTTATAAATCGA
1 GGGTATTATGGTAATTCTATAAATCGA
** * *
36693176 GGGTAAAACGATAATTCTATAAATCGA
1 GGGTATTATGGTAATTCTATAAATCGA
* * * *
36693203 GGGTATAACGGTAATTCTGTAAATTGA
1 GGGTATTATGGTAATTCTATAAATCGA
** *
36693230 GGGTAACACGGTAATTCTATAAATCGA
1 GGGTATTATGGTAATTCTATAAATCGA
**
36693257 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTATGGTAATTCTATAAATCGA
**
36693284 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTATGGTAATTCTATAAATCGA
**
36693311 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTATGGTAATTCTATAAATCGA
** * * *
36693338 GGGTAAAACGGTAATTCTGTAAATCGC
1 GGGTATTATGGTAATTCTATAAATCGA
36693365 GGGTA
1 GGGTA
36693370 AAACGGTAAT
Statistics
Matches: 215, Mismatches: 30, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 212 0.99
28 1 0.00
ACGTcount: A:0.35, C:0.09, G:0.23, T:0.33
Consensus pattern (27 bp):
GGGTATTATGGTAATTCTATAAATCGA
Found at i:36693180 original size:81 final size:81
Alignment explanation
Indices: 36693012--36693167 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
36693002 TTCAAAAATT
*
36693012 AGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTCACAAACCAAGGGTATTTT
36693077 AGTAATTTTACAAACC
66 AGTAATTTTACAAACC
* * * *** *
36693093 AGGGGTATTTTGGTAATTTTAC-TGATCGAGGGTATTTTGGTAATTTGGTAAACCAATGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAG-CCAAGGGTATTTTGGTAATTTCACAAACCAAGGGTATTT
36693157 TAGTAATTTTA
65 TAGTAATTTTA
36693168 TAAATCGAGG
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
80 1 0.02
81 65 0.98
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTCACAAACCAAGGGTATTTT
AGTAATTTTACAAACC
Found at i:36693191 original size:81 final size:81
Alignment explanation
Indices: 36693040--36693208 Score: 180
Period size: 81 Copynumber: 2.1 Consensus size: 81
36693030 TTACAAGCCA
* ****
36693040 AGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTG
1 AGGGTATTTTGGTAATTTCACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAAACG
* * *
36693105 GTAATTTTACT-GATCG
66 ATAATTCTA-TAAATCG
*** * * *
36693121 AGGGTATTTTGGTAATTTGGTAAACCAATGGTATTTTAGTAATTTTATAAATC-GAGGGTAAAAC
1 AGGGTATTTTGGTAATTTCACAAACCAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTAAAAC
36693185 GATAATTCTATAAATCG
65 GATAATTCTATAAATCG
36693202 AGGGTAT
1 AGGGTAT
36693209 AACGGTAATT
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
80 2 0.03
81 70 0.97
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTCACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAAACG
ATAATTCTATAAATCG
Found at i:36693370 original size:27 final size:27
Alignment explanation
Indices: 36693159--36693394 Score: 346
Period size: 27 Copynumber: 8.7 Consensus size: 27
36693149 TGGTATTTTA
*
36693159 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
36693186 ATAATTCTATAAATCGAGGGTATAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
36693213 GTAATTCTGTAAATTGAGGGTAACACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
36693240 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
36693267 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
36693294 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
36693321 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
36693348 GTAATTCTGTAAATCGCGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
36693375 GTAATTTTACAAATTGAGGG
1 GTAATTCTATAAATCGAGGG
36693395 CATTTCAATA
Statistics
Matches: 189, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 189 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:36701379 original size:25 final size:26
Alignment explanation
Indices: 36701350--36701409 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
36701340 TTAATTTATG
*
36701350 TAAAATATTA-ATAATTTAAT-AAAT
1 TAAAATATTAGATAATTGAATAAAAT
36701374 TGAAAA-ATTAGATAATTGAATAAAAT
1 T-AAAATATTAGATAATTGAATAAAAT
36701400 TAAAAT-TTAG
1 TAAAATATTAG
36701410 GAGAAAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
24 5 0.16
25 21 0.68
26 5 0.16
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (26 bp):
TAAAATATTAGATAATTGAATAAAAT
Found at i:36702224 original size:29 final size:30
Alignment explanation
Indices: 36702166--36702225 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
36702156 CCTTTTGAAC
* **
36702166 ATATTTACAAAAAGAGGCATCTAGTTTTTA
1 ATATTTACAAAAAGAGGCAACTAAATTTTA
36702196 ATATTTACAAAAAGA-GCAACTAAATTTTA
1 ATATTTACAAAAAGAGGCAACTAAATTTTA
36702225 A
1 A
36702226 AAATAGTTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (30 bp):
ATATTTACAAAAAGAGGCAACTAAATTTTA
Found at i:36706742 original size:40 final size:40
Alignment explanation
Indices: 36706658--36706841 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
36706648 TTGAATGCTG
* * * *
36706658 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
36706697 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
36706738 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
36706778 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
36706818 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
36706842 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:36706795 original size:80 final size:81
Alignment explanation
Indices: 36706658--36706838 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
36706648 TTGAATGCTG
* * *
36706658 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
36706722 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
36706738 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
36706799 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
36706818 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
36706839 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:36706862 original size:39 final size:38
Alignment explanation
Indices: 36706739--36706888 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
36706729 GTTATTAATT
* ** * *
36706739 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
36706779 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
36706818 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
36706858 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
36706889 GAGCTATATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:36706896 original size:40 final size:39
Alignment explanation
Indices: 36706779--36706901 Score: 97
Period size: 40 Copynumber: 3.1 Consensus size: 39
36706769 GATACTAATT
* ** ** *
36706779 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGT-TTTAAAA
1 CCGGGCTAAGTCCCGAAGGCATT-GAACGAGTGACTATAA
* * *
36706818 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATAA
* *
36706858 CCGGGCTATGTCCCGAAGGCACTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGAACGAGTGA-CTATAA
36706898 CCGG
1 CCGG
36706902 TTAAATTCCG
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
39 25 0.36
40 44 0.64
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATAA
Found at i:36714676 original size:40 final size:40
Alignment explanation
Indices: 36714592--36714775 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
36714582 TTGAATGCTG
* * * *
36714592 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
36714631 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
36714672 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
36714712 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
36714752 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
36714776 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:36714729 original size:80 final size:81
Alignment explanation
Indices: 36714592--36714772 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
36714582 TTGAATGCTG
* * *
36714592 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
36714656 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
36714672 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
36714733 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
36714752 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
36714773 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:36714796 original size:39 final size:38
Alignment explanation
Indices: 36714673--36714822 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
36714663 GTTATTAATT
* ** * *
36714673 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
36714713 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
36714752 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
36714792 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
36714823 GAGCTATATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:36714830 original size:40 final size:39
Alignment explanation
Indices: 36714713--36714835 Score: 97
Period size: 40 Copynumber: 3.1 Consensus size: 39
36714703 GATACTAATT
* ** ** *
36714713 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGT-TTTAAAA
1 CCGGGCTAAGTCCCGAAGGCATT-GAACGAGTGACTATAA
* * *
36714752 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATAA
* *
36714792 CCGGGCTATGTCCCGAAGGCACTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGAACGAGTGA-CTATAA
36714832 CCGG
1 CCGG
36714836 TTAAATTCCG
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
39 25 0.36
40 44 0.64
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATAA
Found at i:36743923 original size:29 final size:29
Alignment explanation
Indices: 36743884--36743962 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
36743874 CTTAATAATC
*
36743884 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
36743914 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
36743943 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
36743963 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:36752035 original size:27 final size:29
Alignment explanation
Indices: 36751968--36752039 Score: 112
Period size: 29 Copynumber: 2.6 Consensus size: 29
36751958 TAATCAACCA
*
36751968 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
*
36751997 CGCACACTTAGTGCCATGCA-TTTCAAC-
1 CGCACACTTAGTGCCATGCACTTTAAACT
36752024 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
36752040 ATCTCACAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 16 0.39
28 6 0.15
29 19 0.46
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:36757289 original size:27 final size:27
Alignment explanation
Indices: 36757259--36757372 Score: 131
Period size: 27 Copynumber: 4.2 Consensus size: 27
36757249 CGATTTACAA
* *
36757259 AATTACTGAAATACTCTTGTACGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
36757286 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* **
36757313 AAATACCAAAATA-CCTCTGTAGGGTAG
1 AATTACTGAAATACCCT-TGTAGGGTAG
* * *
36757340 AATTACTGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAG
36757367 AATTAC
1 AATTAC
36757373 CATTTTGCCC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.03
27 67 0.93
28 3 0.04
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:36757325 original size:54 final size:54
Alignment explanation
Indices: 36757257--36757374 Score: 150
Period size: 54 Copynumber: 2.2 Consensus size: 54
36757247 CTCGATTTAC
**
36757257 AAAATTACTGAAATA-CTCTTGTACGGTAGAATTACTGAAATACCCCTGTAGGGT
1 AAAATTACCAAAATACCTC-TGTACGGTAGAATTACTGAAATACCCCTGTAGGGT
* * * *
36757311 AGAAA-TACCAAAATACCTCTGTAGGGTAGAATTACTGAGATACCCTTGTGGGGT
1 A-AAATTACCAAAATACCTCTGTACGGTAGAATTACTGAAATACCCCTGTAGGGT
36757365 AAAATTACCA
1 AAAATTACCA
36757375 TTTTGCCCCT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
53 3 0.05
54 46 0.84
55 6 0.11
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.27
Consensus pattern (54 bp):
AAAATTACCAAAATACCTCTGTACGGTAGAATTACTGAAATACCCCTGTAGGGT
Found at i:36757649 original size:27 final size:26
Alignment explanation
Indices: 36757574--36757689 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 26
36757564 ATGGAGGAAG
*
36757574 TGTTCTGGTGGCTATGCCATAAATATC
1 TGTTCTGGTGGCTATGCCA-CAATATC
* *
36757601 TATTTCAGGTGGCTATGCCACAAATATC
1 T-GTTCTGGTGGCTATGCCAC-AATATC
* * *
36757629 TGTTCTGATGGCTCTGTCACAATATC
1 TGTTCTGGTGGCTATGCCACAATATC
* *
36757655 TGTATCTGGTGGCTCTGTCACAATATC
1 TGT-TCTGGTGGCTATGCCACAATATC
36757682 TGTTCTGG
1 TGTTCTGG
36757690 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
26 14 0.18
27 40 0.52
28 23 0.30
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (26 bp):
TGTTCTGGTGGCTATGCCACAATATC
Found at i:36763113 original size:13 final size:13
Alignment explanation
Indices: 36763095--36763128 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
36763085 CCTCAAGCAC
36763095 GGGCGTGTGCCCT
1 GGGCGTGTGCCCT
36763108 GGGCGTGTGCCCT
1 GGGCGTGTGCCCT
36763121 GGGCGTGT
1 GGGCGTGT
36763129 AAAGTCTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.00, C:0.26, G:0.50, T:0.24
Consensus pattern (13 bp):
GGGCGTGTGCCCT
Found at i:36765900 original size:19 final size:19
Alignment explanation
Indices: 36765876--36765918 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
36765866 AAACGGAGTC
36765876 GTTTCGTCAAATTATTCTA
1 GTTTCGTCAAATTATTCTA
*
36765895 GTTTCGTCAAATTATTCTT
1 GTTTCGTCAAATTATTCTA
36765914 GTTTC
1 GTTTC
36765919 AAAGTTCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (19 bp):
GTTTCGTCAAATTATTCTA
Found at i:36766812 original size:26 final size:26
Alignment explanation
Indices: 36766783--36766833 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
36766773 ATAATTAAAG
36766783 AAAAAC-AGTCACTTGTTTCAAAGCCC
1 AAAAACGA-TCACTTGTTTCAAAGCCC
*
36766809 AAAAGCGATCACTTGTTTCAAAGCC
1 AAAAACGATCACTTGTTTCAAAGCC
36766834 TTTTCATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (26 bp):
AAAAACGATCACTTGTTTCAAAGCCC
Found at i:36767129 original size:25 final size:26
Alignment explanation
Indices: 36767089--36767158 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 26
36767079 CTCTTTCAAT
36767089 AACTGGGG-AAAAGCCCTTTT-GATA
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
36767113 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTCGATA
* *
36767139 AATTGGGGC-ATAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
36767159 TGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
24 8 0.20
25 22 0.54
26 11 0.27
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGATA
Found at i:36767232 original size:20 final size:20
Alignment explanation
Indices: 36767209--36767272 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
36767199 TGAGTACATA
36767209 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
36767229 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
36767249 ATGTGCATATCATATCA-ATC
1 ATGTGCATATCATA-CATATC
36767269 ATGT
1 ATGT
36767273 ATATCAAAAC
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:36767239 original size:11 final size:11
Alignment explanation
Indices: 36767209--36767261 Score: 60
Period size: 11 Copynumber: 5.2 Consensus size: 11
36767199 TGAGTACATA
36767209 ATGTGCATATC
1 ATGTGCATATC
*
36767220 A--TACATATC
1 ATGTGCATATC
36767229 ATGTGCATATC
1 ATGTGCATATC
*
36767240 A--TACATATC
1 ATGTGCATATC
36767249 ATGTGCATATC
1 ATGTGCATATC
36767260 AT
1 AT
36767262 ATCAATCATG
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
9 16 0.47
11 18 0.53
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (11 bp):
ATGTGCATATC
Found at i:36767278 original size:9 final size:10
Alignment explanation
Indices: 36767209--36767278 Score: 58
Period size: 9 Copynumber: 7.1 Consensus size: 10
36767199 TGAGTACATA
36767209 ATGTGCATATC
1 ATGT-CATATC
*
36767220 AT-ACATATC
1 ATGTCATATC
36767229 ATGTGCATATC
1 ATGT-CATATC
*
36767240 AT-ACATATC
1 ATGTCATATC
36767249 ATGTGCATATC
1 ATGT-CATATC
*
36767260 ATATCA-ATC
1 ATGTCATATC
36767269 ATGT-ATATC
1 ATGTCATATC
36767278 A
1 A
36767279 AAACCCATGT
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
8 1 0.02
9 26 0.54
10 2 0.04
11 19 0.40
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (10 bp):
ATGTCATATC
Found at i:36774910 original size:31 final size:31
Alignment explanation
Indices: 36774872--36774935 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
36774862 CCTTTTCATA
*
36774872 TTTCATATTTCATAACACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCAAAGCCT
** *
36774903 TTTCATATTTCATATTACTGGGCCAAAGCCT
1 TTTCATATTTCATAACACTAGGCCAAAGCCT
36774934 TT
1 TT
36774936 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCAAAGCCT
Found at i:36775240 original size:26 final size:24
Alignment explanation
Indices: 36775144--36775251 Score: 110
Period size: 25 Copynumber: 4.4 Consensus size: 24
36775134 CTGGAGGCCT
*
36775144 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
* *
36775168 AGCCCTTTTGATTAACTGGGGTAAA
1 AGCCCTTTTGATAAACTGGGG-CAA
* *
36775193 AACCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGC-AA
* *
36775218 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
36775243 AGCCCTTTT
1 AGCCCTTTT
36775252 TGCACTTCCT
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
23 7 0.10
24 12 0.17
25 40 0.57
26 11 0.16
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:36785076 original size:24 final size:23
Alignment explanation
Indices: 36785048--36785115 Score: 75
Period size: 22 Copynumber: 2.9 Consensus size: 23
36785038 ATTCCAATGA
36785048 CCTTTATGGCATATTCTAATTTGG
1 CCTTTATGGC-TATTCTAATTTGG
*
36785072 CCTTTATGGC-ATTCTAATATGG
1 CCTTTATGGCTATTCTAATTTGG
* * *
36785094 CATTTGTGGCGTATGCTAATTT
1 CCTTTATGGC-TATTCTAATTT
36785116 ATCTGTTATG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 19 0.51
24 18 0.49
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (23 bp):
CCTTTATGGCTATTCTAATTTGG
Found at i:36786810 original size:22 final size:22
Alignment explanation
Indices: 36786784--36786828 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
36786774 ATTATGTGTA
36786784 TTAATTCATGATATAA-TTAATT
1 TTAATTCAT-ATATAATTTAATT
* *
36786806 TTAATTTATATCTAATTTAATT
1 TTAATTCATATATAATTTAATT
36786828 T
1 T
36786829 GGATTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (22 bp):
TTAATTCATATATAATTTAATT
Found at i:36794667 original size:47 final size:45
Alignment explanation
Indices: 36794379--36794685 Score: 187
Period size: 46 Copynumber: 6.5 Consensus size: 45
36794369 AGGCCGACGC
* * *
36794379 CATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCATTGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT--CATCTC-GTGTCGATG
* * * * *
36794428 CCATGTCCCAAACATGGTTTTACACTAACAGCT-TTAT-ACGTGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACT---AGCTCTCATCTCGTGTCGATG
* * * *
36794476 CCATGTCCTAGACTTGGTCTTACACTGAG---ACATCTCGTAGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACT-AGCTCTCATCTCGT-GTCGATG
* *
36794522 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGACGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCG-TGTCGATG
* * * *
36794568 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTC-GTGTCGATG
* *
36794614 CAATGTCCCAGACATGGTGTTACACTAGCTCTCATAGT-GTGGTCGATG
1 C-ATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGT-GTCGATG
* *
36794662 CATGTCCTAGACATATCTTACACT
1 CATGTCCCAGACATGTCTTACACT
36794686 GTCACACAAA
Statistics
Matches: 206, Mismatches: 36, Indels: 34
0.75 0.13 0.12
Matches are distributed among these distances:
43 1 0.00
44 12 0.06
45 15 0.07
46 68 0.33
47 27 0.13
48 52 0.25
49 2 0.01
50 24 0.12
52 1 0.00
53 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGTGTCGATG
Found at i:36807180 original size:50 final size:50
Alignment explanation
Indices: 36807012--36807381 Score: 289
Period size: 50 Copynumber: 7.7 Consensus size: 50
36807002 ATAGGGTATA
* * *
36807012 ATGTTGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATC-C--ATC-
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATCG
* * * *
36807059 AAGTCGATGCCATGTCCCAGACATGGTCTTACACT-GACTATCGA-A-GTGG
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC-ACATATCG
* *
36807108 A-GGCTGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCG
1 ATGTC-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCG
*
36807158 ATGTCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCACATATCCG
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAT-CG
* * * * *
36807209 -TGCCGATGCCATGTCCCAGACGTGGTCTTACACT-G---ACACATCT-A
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCG
** * * *
36807253 ATAACTGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ACATCTTG
1 ATGTC-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCG
* * * * * * *
36807300 AGGCCGATG-CATGTCCCAGACAT-GTCTTACGCTAGCTAT--CGTCTCA
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCG
36807346 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTA
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTA
36807382 CAAATAACCT
Statistics
Matches: 267, Mismatches: 36, Indels: 39
0.78 0.11 0.11
Matches are distributed among these distances:
44 10 0.04
45 16 0.06
46 60 0.22
47 51 0.19
48 14 0.05
49 36 0.13
50 76 0.28
51 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
ATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCG
Found at i:36810412 original size:22 final size:19
Alignment explanation
Indices: 36810384--36810425 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
36810374 TGATAATCTT
36810384 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
36810406 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
36810425 T
1 T
36810426 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:36810478 original size:15 final size:16
Alignment explanation
Indices: 36810458--36810487 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36810448 TAGTATCATA
36810458 TTTTA-TTTAATAAAC
1 TTTTATTTTAATAAAC
36810473 TTTTATTTTAATAAA
1 TTTTATTTTAATAAA
36810488 TTAATAGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (16 bp):
TTTTATTTTAATAAAC
Found at i:36813547 original size:30 final size:30
Alignment explanation
Indices: 36813506--36813562 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
36813496 TTTCCGAGCC
36813506 TAGGGGAAAATTGTAATTCTG-CAAAGGTT
1 TAGGGGAAAATTGTAATTCTGCCAAAGGTT
*
36813535 TAGGGGTAAAATTGTAATTTTGCCAAAG
1 TAGGGG-AAAATTGTAATTCTGCCAAAG
36813563 TTTGAGTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 6 0.24
30 14 0.56
31 5 0.20
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (30 bp):
TAGGGGAAAATTGTAATTCTGCCAAAGGTT
Found at i:36814149 original size:44 final size:44
Alignment explanation
Indices: 36814101--36814186 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
36814091 TTGATATCTC
* *
36814101 AAAGTCCATGGTT-GTACCATGGCAATTAAGGAAGAATTGACGAA
1 AAAGTCCAT-GTTCATAACATGGCAATTAAGGAAGAATTGACGAA
* *
36814145 AAAGTCCATGTTCATAACATGGCATTTAAGGAGGAATTGACG
1 AAAGTCCATGTTCATAACATGGCAATTAAGGAAGAATTGACG
36814187 GTTAAGGAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 3 0.08
44 34 0.92
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (44 bp):
AAAGTCCATGTTCATAACATGGCAATTAAGGAAGAATTGACGAA
Found at i:36814345 original size:18 final size:18
Alignment explanation
Indices: 36814324--36814365 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
36814314 GCATTGGAAC
36814324 TAAGACAAGCATACCATG
1 TAAGACAAGCATACCATG
* *
36814342 TAAGACAAGGATATCATG
1 TAAGACAAGCATACCATG
36814360 TAAGAC
1 TAAGAC
36814366 CATGTTTGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.45, C:0.17, G:0.19, T:0.19
Consensus pattern (18 bp):
TAAGACAAGCATACCATG
Found at i:36814410 original size:47 final size:47
Alignment explanation
Indices: 36814341--36814463 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
36814331 AGCATACCAT
36814341 GTAAGACAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTG
1 GTAAGACAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTG
* *
36814388 GTAAGACAAGGATACCATGTAAGACTATGTTTGGAACATGGCATTTG
1 GTAAGACAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTG
* *
36814435 GTAAGATAAGGATATCATGGAAGACCATG
1 GTAAGACAAGGATATCATGTAAGACCATG
36814464 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26
Consensus pattern (47 bp):
GTAAGACAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTG
Found at i:36814500 original size:54 final size:54
Alignment explanation
Indices: 36814436--36814630 Score: 205
Period size: 54 Copynumber: 3.6 Consensus size: 54
36814426 TGGCATTTGG
* * * *
36814436 TAAGATAAGGATATCATGGAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
* * ** * *
36814490 TAAGGTAAGGAAATCATGTAAGACCATATCAAGACATGGAATTGATGAGTTACTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTA
* * *
36814545 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
1 TAAGG-TAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
* * * *
36814598 TAAGGCAAGGGTACCACGTAAGACCATGTCAAG
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAG
36814631 ATATGGAAAT
Statistics
Matches: 117, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 25 0.21
54 44 0.38
55 40 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.22
Consensus pattern (54 bp):
TAAGGTAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
Found at i:36814624 original size:53 final size:54
Alignment explanation
Indices: 36814450--36814630 Score: 211
Period size: 55 Copynumber: 3.4 Consensus size: 54
36814440 ATAAGGATAT
* * * ** *
36814450 CATGGAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTAAGGAAAT
1 CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAGGGTAC
** * * * *
36814504 CATGTAAGACCATATCAAGACATGGAATTGATGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGCAAGGGTAC
*
36814559 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGGTAC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAGGGTAC
* *
36814612 CACGTAAGACCATGTCAAG
1 CATGTAAGACCATGCCAAG
36814631 ATATGGAAAT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
53 30 0.29
54 32 0.30
55 43 0.41
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAGGGTAC
Found at i:36814649 original size:53 final size:53
Alignment explanation
Indices: 36814507--36814650 Score: 171
Period size: 53 Copynumber: 2.7 Consensus size: 53
36814497 AGGAAATCAT
* * * *
36814507 GTAAGACCATATCAAGACATGGAATTGATGAGTTACTATAAGGCAAAGGTCCCAT
1 GTAAGACCATGTCAAGACATGGAATTGGTGAGTT-C-ATAAGGCAAAGGTACCAC
* * * *
36814562 GTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGGTACCAC
1 GTAAGACCATGTCAAGACATGGAATTGGTGAGTTCATAAGGCAAAGGTACCAC
* * *
36814615 GTAAGACCATGTCAAGATATGGAAATGGTAAGTTCA
1 GTAAGACCATGTCAAGACATGGAATTGGTGAGTTCA
36814651 AAATGGAAAA
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
53 45 0.60
54 1 0.01
55 29 0.39
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (53 bp):
GTAAGACCATGTCAAGACATGGAATTGGTGAGTTCATAAGGCAAAGGTACCAC
Found at i:36814665 original size:109 final size:109
Alignment explanation
Indices: 36814450--36814660 Score: 257
Period size: 108 Copynumber: 2.0 Consensus size: 109
36814440 ATAAGGATAT
* * *
36814450 CATGGAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTAAGGAAATCATGTAAGACC
1 CATGGAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* * * *
36814515 ATATCAAGACATGGAATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATATCAAGACATGGAAATGATAAGTTACTAAAAGGAAAAGGTCC
* * * **
36814559 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGGTACCACGTAAGACC
1 CATGGAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* * *
36814623 ATGTCAAGATATGGAAATGGTAAGTT-C-AAAATGGAAAA
66 ATATCAAGACATGGAAATGATAAGTTACTAAAA-GGAAAA
36814661 AAGGTTCTCG
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
106 3 0.03
107 6 0.07
108 42 0.49
109 35 0.41
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (109 bp):
CATGGAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ATATCAAGACATGGAAATGATAAGTTACTAAAAGGAAAAGGTCC
Found at i:36815735 original size:291 final size:291
Alignment explanation
Indices: 36815204--36815777 Score: 1112
Period size: 291 Copynumber: 2.0 Consensus size: 291
36815194 AATGTTCCAG
36815204 TTTATGACATGTATAGGGACTTAGACATTTTGTGTGTCTGTCCTTATGATATGGCTAAAGAATGG
1 TTTATGACATGTATAGGGACTTAGACATTTTGTGTGTCTGTCCTTATGATATGGCTAAAGAATGG
36815269 TATGTAAATATTTGATAATGATTAGCTATTGAAATGGCTAATGAAGAACATGTTTCAGTGTTATG
66 TATGTAAATATTTGATAATGATTAGCTATTGAAATGGCTAATGAAGAACATGTTTCAGTGTTATG
36815334 TATGCCTAAATGGTAGTTAATACAAAGAAATCATGAAAAAGTGAAATTAGCATTAAAACAGTATT
131 TATGCCTAAATGGTAGTTAATACAAAGAAATCATGAAAAAGTGAAATTAGCATTAAAACAGTATT
*
36815399 GAACAGCCACAATGACGTGATCTTGAAAAATCACCAAGAATAGTATAAATGGAATTAGATGATGA
196 GAACAGCCACAATGACGTGATCTTGAAAAATCACCAAGAATAGTATAAATAGAATTAGATGATGA
36815464 ATGAGATATAAAATTAAATCTTAATAAGATA
261 ATGAGATATAAAATTAAATCTTAATAAGATA
*
36815495 TTTATGGCATGTATAGGGACTTAGACATTTTGTGTGTCTGTCCTTATGATATGGCTAAAGAATGG
1 TTTATGACATGTATAGGGACTTAGACATTTTGTGTGTCTGTCCTTATGATATGGCTAAAGAATGG
36815560 TATGTAAATATTTGATAATGATTAGCTATTGAAATGGCTAATGAAGAACATGTTTCAGTGTTATG
66 TATGTAAATATTTGATAATGATTAGCTATTGAAATGGCTAATGAAGAACATGTTTCAGTGTTATG
36815625 TATGCCTAAATGGTAGTTAATACAAAGAAATCATGAAAAAGTGAAATTAGCATTAAAACAGTATT
131 TATGCCTAAATGGTAGTTAATACAAAGAAATCATGAAAAAGTGAAATTAGCATTAAAACAGTATT
*
36815690 GAACAGCCGCAATGACGTGATCTTGAAAAATCACCAAGAATAGTATAAATAGAATTAGATGATGA
196 GAACAGCCACAATGACGTGATCTTGAAAAATCACCAAGAATAGTATAAATAGAATTAGATGATGA
*
36815755 ATGAGATATAGAATTAAATCTTA
261 ATGAGATATAAAATTAAATCTTA
36815778 TTGAATCTAT
Statistics
Matches: 279, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
291 279 1.00
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (291 bp):
TTTATGACATGTATAGGGACTTAGACATTTTGTGTGTCTGTCCTTATGATATGGCTAAAGAATGG
TATGTAAATATTTGATAATGATTAGCTATTGAAATGGCTAATGAAGAACATGTTTCAGTGTTATG
TATGCCTAAATGGTAGTTAATACAAAGAAATCATGAAAAAGTGAAATTAGCATTAAAACAGTATT
GAACAGCCACAATGACGTGATCTTGAAAAATCACCAAGAATAGTATAAATAGAATTAGATGATGA
ATGAGATATAAAATTAAATCTTAATAAGATA
Found at i:36828750 original size:40 final size:40
Alignment explanation
Indices: 36828694--36828896 Score: 268
Period size: 40 Copynumber: 5.1 Consensus size: 40
36828684 CGGAATTTAA
* * * *
36828694 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGT
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
36828734 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36828774 CCGGATATAGTAACTCTCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36828814 CCGGATATAATAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36828853 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
36828893 CCGG
1 CCGG
36828897 TTATCATTTG
Statistics
Matches: 144, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.24
40 109 0.76
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36845131 original size:55 final size:55
Alignment explanation
Indices: 36845072--36845180 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
36845062 TAACTTTAGT
*
36845072 ACACGGCCACGGCACACCCCCGTGTGGCCTGCCCATGTACAACACTGACTTAAAA
1 ACACGGCCACGGCACACCCCCGTGTGGACTGCCCATGTACAACACTGACTTAAAA
* ** *
36845127 ACACGGCCATGGCACATGCCCGTGTGGACTGCCCGTGTACAACACTGACTTAAA
1 ACACGGCCACGGCACACCCCCGTGTGGACTGCCCATGTACAACACTGACTTAAA
36845181 TTTTAAGTGT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.27, C:0.35, G:0.22, T:0.17
Consensus pattern (55 bp):
ACACGGCCACGGCACACCCCCGTGTGGACTGCCCATGTACAACACTGACTTAAAA
Found at i:36861400 original size:12 final size:12
Alignment explanation
Indices: 36861385--36861418 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
36861375 AAATCCCCAC
*
36861385 AAATTTCTCCTA
1 AAATCTCTCCTA
36861397 AAATCTCTCCTA
1 AAATCTCTCCTA
*
36861409 AAATCCCTCC
1 AAATCTCTCC
36861419 AACCGATCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.32, C:0.35, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATCTCTCCTA
Found at i:36864660 original size:46 final size:45
Alignment explanation
Indices: 36864608--36864764 Score: 158
Period size: 46 Copynumber: 3.4 Consensus size: 45
36864598 TGGGCATCCA
*
36864608 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCG
1 AACTCGTTGAGTTGAGTCTGAGTTCACTTAT-GATGCAAACGTCCG
* * * * *
36864654 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGATGCAA--A--CGTCCG
* *
36864701 AGCTCGTTGAGTTGAGT-TCGAGTTCACTTATAGATGCAAACGTCTG
1 AACTCGTTGAGTTGAGTCT-GAGTTCACTTAT-GATGCAAACGTCCG
36864747 AACTCGTTGAGTTGAGTC
1 AACTCGTTGAGTTGAGTC
36864765 CAAGTTTGTG
Statistics
Matches: 88, Mismatches: 14, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
43 5 0.06
45 3 0.03
46 44 0.50
47 27 0.31
48 3 0.03
50 6 0.07
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCTGAGTTCACTTATGATGCAAACGTCCG
Found at i:36864717 original size:47 final size:47
Alignment explanation
Indices: 36864650--36864818 Score: 193
Period size: 47 Copynumber: 3.6 Consensus size: 47
36864640 GATGCGAACG
36864650 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* * * * * *
36864697 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATAGATGCAA--A--CG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GAGATGTAACTAGGCA
* * *
36864743 TCTGAACTCGTTGAGTTGAGTCCAAGTTTGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
*
36864790 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
36864819 ACTTATAGAT
Statistics
Matches: 96, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
43 7 0.07
44 1 0.01
45 1 0.01
46 25 0.26
47 52 0.54
48 1 0.01
49 2 0.02
50 7 0.07
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:36864864 original size:93 final size:93
Alignment explanation
Indices: 36864600--36864865 Score: 399
Period size: 93 Copynumber: 2.9 Consensus size: 93
36864590 CGGATATTTG
* * * * *
36864600 GGCATCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAAC-ACCTGAACTCGTTGA
*
36864664 GTTGAGTCCGAGTTCGTGAGATGTAACTA
65 GTTGAGTCCGAGTTTGTGAGATGTAACTA
* * **
36864693 GGCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATAGATGCAAACGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACACCTGAACTCGTTGAG
*
36864758 TTGAGTCCAAGTTTGTGAGATGTAACTA
66 TTGAGTCCGAGTTTGTGAGATGTAACTA
* *
36864786 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACACCTGAGCTCGTTGCG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACACCTGAACTCGTTGAG
36864851 TTGAGTCCGAGTTTG
66 TTGAGTCCGAGTTTG
36864866 CTTATGGGCA
Statistics
Matches: 155, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
92 1 0.01
93 154 0.99
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACACCTGAACTCGTTGAG
TTGAGTCCGAGTTTGTGAGATGTAACTA
Found at i:36871238 original size:43 final size:44
Alignment explanation
Indices: 36871119--36871239 Score: 133
Period size: 43 Copynumber: 2.8 Consensus size: 44
36871109 GCTCATACAT
* * * **
36871119 TGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCTG
1 TGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATAACAA
* *
36871162 TGCC-ACTATCCCAGACAGGGTCTTACACG-AAATCAAA-AACAA
1 TGCCAAC-GTCCCAGACATGGTCTTACACGTAAATCAAATAACAA
*
36871204 TGCCAACGTCTCAGACATGGTCTTACACGTAAATCA
1 TGCCAACGTCCCAGACATGGTCTTACACGTAAATCA
36871240 TAAGTCGATG
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
42 27 0.42
43 37 0.58
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (44 bp):
TGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATAACAA
Found at i:36879226 original size:16 final size:16
Alignment explanation
Indices: 36879190--36879228 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
36879180 GTTTGGTTCA
*
36879190 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
* *
36879206 TTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
36879222 CTGTAAT
1 CTGTAAT
36879229 CAGTAATTCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:36879291 original size:44 final size:46
Alignment explanation
Indices: 36879217--36879303 Score: 133
Period size: 44 Copynumber: 1.9 Consensus size: 46
36879207 TGTAATTGAA
36879217 TAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAATGGAG
1 TAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAATGGAG
***
36879263 TAGAGCTGTAAT-AG-AATTCTTGTGTTTGGTTGAATGGAATG
1 TAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAATG
36879304 ATGTTGTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 24 0.63
45 2 0.05
46 12 0.32
ACGTcount: A:0.29, C:0.07, G:0.29, T:0.36
Consensus pattern (46 bp):
TAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAATGGAG
Done.