Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 115 of 352
Found at i:36879418 original size:25 final size:25
Alignment explanation
Indices: 36879374--36879424 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
36879364 GTTGATAGAT
36879374 GATTATTGTTATTAAA-TTTTAATAA
1 GATTATTGTTA-TAAATTTTTAATAA
36879399 GATTATTGTTA-AATATTTTTTAATAA
1 GATTATTGTTATAA-A-TTTTTAATAA
36879425 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
23 2 0.09
24 1 0.04
25 11 0.48
26 9 0.39
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (25 bp):
GATTATTGTTATAAATTTTTAATAA
Found at i:36879485 original size:24 final size:21
Alignment explanation
Indices: 36879464--36879522 Score: 75
Period size: 20 Copynumber: 2.8 Consensus size: 21
36879454 TAACATAATT
36879464 ATTATTAAATATAATTTAATAA
1 ATTATT-AATATAATTTAATAA
* *
36879486 AATAAT-ATATAATTTAATAA
1 ATTATTAATATAATTTAATAA
36879506 CATTATTAATATAATTT
1 -ATTATTAATATAATTT
36879523 TTAATAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 14 0.45
21 4 0.13
22 13 0.42
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
ATTATTAATATAATTTAATAA
Found at i:36879486 original size:55 final size:54
Alignment explanation
Indices: 36879426--36879546 Score: 127
Period size: 57 Copynumber: 2.2 Consensus size: 54
36879416 TTTTAATAAA
* * *
36879426 AATAAAAATAAATAATTTAATCATATT-TTAACATAATTATTATTAAATATAATTT
1 AATAAAAATAAATAATTTAATAACATTATTAACATAATTATTAAT-AATA-AATTT
* * * *
36879481 AATAAAATAATATATAATTTAATAACATTATTAATATAATTTTTAATAATAATTTT
1 AAT-AAA-AATAAATAATTTAATAACATTATTAACATAATTATTAATAATAAATTT
36879537 AATATAAAAT
1 AATA-AAAAT
36879547 TATTATTATG
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
55 7 0.13
56 12 0.22
57 22 0.40
58 14 0.25
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (54 bp):
AATAAAAATAAATAATTTAATAACATTATTAACATAATTATTAATAATAAATTT
Found at i:36879525 original size:24 final size:24
Alignment explanation
Indices: 36879498--36879543 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
36879488 TAATATATAA
*
36879498 TTTAATAA-CATTATTAATATAATT
1 TTTAATAATAATT-TTAATATAATT
36879522 TTTAATAATAATTTTAATATAA
1 TTTAATAATAATTTTAATATAA
36879544 AATTATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (24 bp):
TTTAATAATAATTTTAATATAATT
Found at i:36882027 original size:40 final size:40
Alignment explanation
Indices: 36881983--36882063 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
36881973 TTAGTTATAC
36881983 TGCAGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGA
1 TGCAGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGA
36882023 TGCAGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGA
1 TGCAGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGA
36882063 T
1 T
36882064 AGAGTTCCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (40 bp):
TGCAGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGA
Found at i:36884274 original size:32 final size:32
Alignment explanation
Indices: 36884238--36884309 Score: 126
Period size: 32 Copynumber: 2.2 Consensus size: 32
36884228 GAGAGCTTTA
36884238 AGAGAGCTTTAAGGGAATTTTGTGTTTTAGAC
1 AGAGAGCTTTAAGGGAATTTTGTGTTTTAGAC
*
36884270 AGAGATCTTTAAGGGAATTTTGTGTTTTAGAC
1 AGAGAGCTTTAAGGGAATTTTGTGTTTTAGAC
*
36884302 AGAAAGCT
1 AGAGAGCT
36884310 GTATTTTTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (32 bp):
AGAGAGCTTTAAGGGAATTTTGTGTTTTAGAC
Found at i:36886945 original size:46 final size:47
Alignment explanation
Indices: 36886777--36886950 Score: 171
Period size: 46 Copynumber: 3.7 Consensus size: 47
36886767 TAACCCACCT
* *
36886777 ATAAGCGAACTCGGACTCAACTCAACAAGCTC-AAGCGTTCGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCGTTCGCATCC
* * * * *
36886823 ATAAGTGAACTCGGACTTAACTTAACGAGCTAGGATGCCTAGTT-ACAT-C
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA-G-C--GTTCGCATCC
* *
36886872 -TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CGTTCGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCGTTCGCATCC
* *
36886916 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
36886951 TGTCCAAATA
Statistics
Matches: 103, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 56 0.54
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (47 bp):
ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCGTTCGCATCC
Found at i:36893557 original size:38 final size:38
Alignment explanation
Indices: 36893513--36893662 Score: 183
Period size: 38 Copynumber: 3.9 Consensus size: 38
36893503 GCTTAAAGGT
*
36893513 CCGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAATC
1 CCGCAGGCTTCGTGCTGGTACTATATTCGGGTTAAATC
*
36893551 CCGCAGGCTTCGTGCTGGTACTATATCCGGGTTAAATC
1 CCGCAGGCTTCGTGCTGGTACTATATTCGGGTTAAATC
* * *
36893589 CCGCAGGCTTAGTGCTGGTATTATATTCGAGCTTAAAGTC
1 CCGCAGGCTTCGTGCTGGTACTATATTCG-GGTTAAA-TC
* * * * *
36893629 CTGCAGGTTTTGTGCTAGTGACTAGATTCGGGTT
1 CCGCAGGCTTCGTGCTGGT-ACTATATTCGGGTT
36893663 TTTAAACCTA
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
38 62 0.65
39 6 0.06
40 20 0.21
41 8 0.08
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.33
Consensus pattern (38 bp):
CCGCAGGCTTCGTGCTGGTACTATATTCGGGTTAAATC
Found at i:36901070 original size:46 final size:47
Alignment explanation
Indices: 36900911--36901273 Score: 207
Period size: 46 Copynumber: 7.7 Consensus size: 47
36900901 TTTGTGCGCT
* * *
36900911 AGTGTAAGA-CATGTTTGGGACATGCATCGACCATATTATGA-G-AA-CC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCC-TA-GA-GATGTAAGCC
* * * * * * *
36900957 AGTGTAAGACCATGTCTGGGACATGGAAACGACATCGAGACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTAGAGATGTA-AGCC
36901005 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTAGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTAGAGATGTAAGCC
* * **
36901051 AGTGTAAGA-CATGTTTGGGACATGCATCGG-CTATGACATGT--GTT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTA-GAGATGTAAGCC
* * *
36901095 AGTGTAAGACCATGTCTGGGACATGGCATTGGCAC-GGATATGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CTAGAGATGT-A-AGCC
* * ** * ** *
36901145 AGTGTAAGACCATGTCTGGGACAAGGCGTCTACCTCGATTTCG-ATAGTC
1 AGTGTAAGACCATGTCTGGGAC-ATGCATCGGCCTAGAGAT-GTA-AGCC
* * *
36901194 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGGATG--ACCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTAGA--GATGTAAGCC
*
36901241 AGCGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC
36901274 ATTACACCCT
Statistics
Matches: 251, Mismatches: 44, Indels: 42
0.74 0.13 0.12
Matches are distributed among these distances:
44 10 0.04
45 18 0.07
46 73 0.29
47 61 0.24
48 23 0.09
49 32 0.13
50 32 0.13
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTAGAGATGTAAGCC
Found at i:36903726 original size:13 final size:13
Alignment explanation
Indices: 36903704--36903743 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
36903694 GAAGCACTTG
36903704 CACACGGGCGTGT
1 CACACGGGCGTGT
* *
36903717 CACACAGGCGTTT
1 CACACGGGCGTGT
36903730 CACACGGGCGTGT
1 CACACGGGCGTGT
36903743 C
1 C
36903744 TCTGTCCGGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:36913805 original size:48 final size:48
Alignment explanation
Indices: 36913734--36914215 Score: 793
Period size: 48 Copynumber: 10.0 Consensus size: 48
36913724 CAAGATAAAT
* * * * *
36913734 ATATATATGTGTGGTAAATCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
36913782 ATATGTATATTTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
36913830 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
36913878 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
36913926 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
36913974 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
36914022 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
36914070 ATATGTACATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
36914118 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
36914166 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
36914214 AT
1 AT
36914216 GTGTGTATAT
Statistics
Matches: 406, Mismatches: 28, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 406 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:36914406 original size:37 final size:37
Alignment explanation
Indices: 36914356--36914458 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
36914346 GGAAATATAT
*
36914356 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
36914393 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
36914430 TCCGGGTAAGACCTGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
36914459 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36923405 original size:46 final size:48
Alignment explanation
Indices: 36923303--36923524 Score: 194
Period size: 46 Copynumber: 4.7 Consensus size: 48
36923293 ACATTATGAG
* * * *
36923303 AGCCAGTGTAAGACCACGCCTGGGACATGGCAAT-AGCATCGAGATG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGC-ATCGGCCTCGAGATGTA
* *
36923350 GAGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
* * *
36923397 AACCAGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CTATGAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTA
* * * *
36923442 -GTCAGTGTAAGACCACGTCTGGGACATGGCATAGGCAC-GGAGATGTGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATGT-A
*
36923490 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
36923525 AGCATTACAC
Statistics
Matches: 142, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
44 10 0.07
45 17 0.12
46 61 0.43
47 12 0.08
48 13 0.09
50 29 0.20
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.21
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
Found at i:36925284 original size:12 final size:12
Alignment explanation
Indices: 36925267--36925298 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
36925257 ATGCTAATTT
36925267 CATTCTTTCACA
1 CATTCTTTCACA
36925279 CATTCTTTCACA
1 CATTCTTTCACA
36925291 CATTCTTT
1 CATTCTTT
36925299 ATACTAACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (12 bp):
CATTCTTTCACA
Found at i:36931014 original size:93 final size:93
Alignment explanation
Indices: 36930907--36931077 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
36930897 GCCCCTAAGT
* *
36930907 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36930972 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
36931000 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36931065 CGAGTTCGGATGC
66 CGAGTTCGGATGC
36931078 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36931074 original size:46 final size:46
Alignment explanation
Indices: 36930902--36931074 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
36930892 AACCCGCCCC
* * *
36930902 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
36930948 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
36930996 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
36931041 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36931075 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:36931531 original size:30 final size:30
Alignment explanation
Indices: 36931497--36931556 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
36931487 ATTTAATACG
36931497 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
36931527 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36931557 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36938591 original size:93 final size:93
Alignment explanation
Indices: 36938484--36938654 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
36938474 GCCCCTAAGT
* * *
36938484 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
36938549 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
36938577 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
36938642 CGAGTTCGGATGC
66 CGAGTTCGGATGC
36938655 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36938651 original size:46 final size:46
Alignment explanation
Indices: 36938479--36938651 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
36938469 AACCCGCCCC
* * *
36938479 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
36938525 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
36938573 TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
36938618 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36938652 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:36939106 original size:30 final size:30
Alignment explanation
Indices: 36939072--36939131 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
36939062 ATTTAATACG
36939072 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
36939102 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36939132 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36946635 original size:22 final size:22
Alignment explanation
Indices: 36946607--36946729 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
36946597 ACATGCATAT
36946607 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
36946629 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
36946651 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
* * *
36946676 ATGTGATTAATG-TGAACAT-GCATA
1 ATGTGA-TAAGGCCG-A-ATGGC-CA
36946700 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
36946723 ATGTGAT
1 ATGTGAT
36946730 GAATGTGAAC
Statistics
Matches: 75, Mismatches: 10, Indels: 32
0.64 0.09 0.27
Matches are distributed among these distances:
22 23 0.31
23 18 0.24
24 18 0.24
25 16 0.21
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:36946814 original size:47 final size:47
Alignment explanation
Indices: 36946535--36946799 Score: 415
Period size: 47 Copynumber: 5.6 Consensus size: 47
36946525 TTAGGATTTT
** * *
36946535 ATGTGATGAATGTGAATGTGTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36946582 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36946629 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36946676 ATGTGATTAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36946723 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36946770 ATGTGATGAACGTGAA-AGTGTATATATGTG
1 ATGTGATGAATGTGAACA-TGCATATATGTG
36946800 GCGAAGCCGA
Statistics
Matches: 202, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 201 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:36946877 original size:46 final size:46
Alignment explanation
Indices: 36946793--36946881 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
36946783 GAAAGTGTAT
* * *
36946793 ATATGTGGCGAAGCCGAATGGCTAATGCGAAACGTGTATGAGACGG
1 ATATGTGGCAAAGCCAAATGGCTAATGCGAAACATGTATGAGACGG
* * * *
36946839 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGA
1 ATATGTGGCAAAGCCAAATGGCTAATGCGAAACATGTATGAGA
36946882 TGTGTATATA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.34, C:0.11, G:0.31, T:0.24
Consensus pattern (46 bp):
ATATGTGGCAAAGCCAAATGGCTAATGCGAAACATGTATGAGACGG
Found at i:36947079 original size:37 final size:37
Alignment explanation
Indices: 36947029--36947099 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
36947019 GGAAATATAT
36947029 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
36947066 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
36947100 TCGTCTGAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36953848 original size:47 final size:48
Alignment explanation
Indices: 36953782--36954052 Score: 272
Period size: 47 Copynumber: 5.8 Consensus size: 48
36953772 TATGATAGCC
* *
36953782 AGTGTAAGACCATGACTGGGACATGGCAACGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
*
36953830 AGTGTAAGA-CATGTCTGGGACATGGCAACGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
* ** * *
36953877 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGAGCT
* * * *
36953923 AGTGTTAGA-CATGTCTGGGACAT-GCATCGGC-TATGAGA--TGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGACGAGAGCT
* * * * *
36953967 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACAGTGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG--CATTGAGACGAGAGCT
* *
36954017 AGTGTAAGACCATGTTTGGGACATGGCATCAGCATT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
36954053 ACACCCTATG
Statistics
Matches: 189, Mismatches: 24, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
44 9 0.05
45 14 0.07
46 55 0.29
47 61 0.32
48 17 0.09
50 33 0.17
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
Found at i:36953944 original size:46 final size:46
Alignment explanation
Indices: 36953736--36954051 Score: 230
Period size: 47 Copynumber: 6.7 Consensus size: 46
36953726 TTTGTGTGCT
* * ** * *
36953736 AGTGTAAGACATGTCTGGGACATACATCAGCCA-CATTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCATCAAGACGAGAGCC
* * ** *
36953782 AGTGTAAGACCATGACTGGGACATGGCAACGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCAAGACGAGAGCC
* ** *
36953830 AGTGTAAGACATGTCTGGGACATGGCAACGGCATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCATCAAGACGAGAGCC
* *
36953877 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACG-AGAGCC
* * * **
36953923 AGTGTTAGACATGTCTGGGACATGCATCGGC-T-ATGA-GATGTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGA-GAGCC
* * *
36953967 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-CAGTGATATGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCA---AGACGAGAGCC
* *
36954017 AGTGTAAGACCATGTTTGGGACATGGCATCAGCAT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAT
36954052 TACACCCTAT
Statistics
Matches: 224, Mismatches: 31, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 12 0.05
45 14 0.06
46 62 0.28
47 78 0.35
48 18 0.08
50 36 0.16
51 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGAGAGCC
Found at i:36954031 original size:141 final size:140
Alignment explanation
Indices: 36953736--36954049 Score: 359
Period size: 141 Copynumber: 2.2 Consensus size: 140
36953726 TTTGTGTGCT
* **
36953736 AGTGTAAGACATGTCTGGGACATACATCAGCCACATTATGATAGCCAGTGTAAGACCATGACTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGATAGCCAGTGTAAGACCATGACTGG
*
36953801 GACATGGCAACGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGGCAACGGCATTG
66 GACATGGCAACGGCATTGAGAC-AGAGCTAGTGTAAGACATGTCTGGGACATGGCAACGGCAGTG
*
36953866 AGACGAGAGCT
130 AGACGAGAGCC
* * * *
36953877 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATG-TAAGCCAGTGTTAGA-CATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGAT-AGCCAGTGTAAGACCATGACTG
* * * * * *
36953940 GGACAT-GCATCGGC-TATGAGA-TGTGTTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAC
65 GGACATGGCAACGGCAT-TGAGACAGAGCTAGTGTAAGA-CATGTCTGGGACATGGCAACGG--C
* *
36954002 AGTGATATGAGAGCC
126 AGTGAGACGAGAGCC
*
36954017 AGTGTAAGACCATGTTTGGGACATGGCATCAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
36954050 ATTACACCCT
Statistics
Matches: 147, Mismatches: 19, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
137 12 0.08
138 21 0.14
139 12 0.08
140 35 0.24
141 60 0.41
142 7 0.05
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGATAGCCAGTGTAAGACCATGACTGG
GACATGGCAACGGCATTGAGACAGAGCTAGTGTAAGACATGTCTGGGACATGGCAACGGCAGTGA
GACGAGAGCC
Found at i:36955428 original size:16 final size:17
Alignment explanation
Indices: 36955399--36955430 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
36955389 AAAGTCACTT
36955399 TCATAATGATCATGAAC
1 TCATAATGATCATGAAC
36955416 TCATAAT-ATCATGAA
1 TCATAATGATCATGAA
36955431 GCCAATGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (17 bp):
TCATAATGATCATGAAC
Found at i:36955660 original size:42 final size:41
Alignment explanation
Indices: 36955614--36955777 Score: 179
Period size: 41 Copynumber: 4.0 Consensus size: 41
36955604 TTATATGGGA
*
36955614 TCTCATATTGATGCCAATAG-CCCA-ACTATGGTCTTACACGAT
1 TCTCATATCGATGCC-AT-GTCCCAGA-TATGGTCTTACACGAT
* * * *
36955656 TCTCATATCAATGCCATGTCCCATACATGGTCTTACACAAT
1 TCTCATATCGATGCCATGTCCCAGATATGGTCTTACACGAT
* * *
36955697 TCTCATATCGATTCCATGTCCCAGAAATGGTCTTACACGAAA
1 TCTCATATCGATGCCATGTCCCAGATATGGTCTTACACG-AT
** *
36955739 TCTCATATCGATTTCATATCCCAGATATGGTCTTACACG
1 TCTCATATCGATGCCATGTCCCAGATATGGTCTTACACG
36955778 TAAACTCATA
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
40 1 0.01
41 54 0.51
42 51 0.48
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (41 bp):
TCTCATATCGATGCCATGTCCCAGATATGGTCTTACACGAT
Found at i:36955699 original size:41 final size:41
Alignment explanation
Indices: 36955641--36955776 Score: 182
Period size: 41 Copynumber: 3.3 Consensus size: 41
36955631 TAGCCCAACT
* * * * *
36955641 ATGGTCTTACACGATTCTCATATCAATGCCATGTCCCATAC
1 ATGGTCTTACACAATTCTCATATCGATTCCATGTCCCAGAA
36955682 ATGGTCTTACACAATTCTCATATCGATTCCATGTCCCAGAA
1 ATGGTCTTACACAATTCTCATATCGATTCCATGTCCCAGAA
* * * *
36955723 ATGGTCTTACACGAAATCTCATATCGATTTCATATCCCAGAT
1 ATGGTCTTACAC-AATTCTCATATCGATTCCATGTCCCAGAA
36955765 ATGGTCTTACAC
1 ATGGTCTTACAC
36955777 GTAAACTCAT
Statistics
Matches: 85, Mismatches: 9, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
41 48 0.56
42 37 0.44
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (41 bp):
ATGGTCTTACACAATTCTCATATCGATTCCATGTCCCAGAA
Found at i:36963950 original size:35 final size:35
Alignment explanation
Indices: 36963870--36964022 Score: 128
Period size: 35 Copynumber: 4.3 Consensus size: 35
36963860 AATCATACCC
* * * *
36963870 AAAAAACACCAGATGCTCACAAGAGCTGATCCATCC
1 AAAACACACCA-ATGCTCATAAGAGCTAATCCATCT
* *
36963906 AAAATACACCAATGCTCATAAGAGCTAATCCCTCT
1 AAAACACACCAATGCTCATAAGAGCTAATCCATCT
** ** * * *
36963941 GCAACACACCAATGCTTGTAAAAGTTAATCCCT-T
1 AAAACACACCAATGCTCATAAGAGCTAATCCATCT
* ** *
36963975 CGAAACACACCAATGCTTGTAAGAGTTAATCCATCT
1 -AAAACACACCAATGCTCATAAGAGCTAATCCATCT
36964011 AAAACACACCAA
1 AAAACACACCAA
36964023 AACAGAGAGT
Statistics
Matches: 99, Mismatches: 16, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
34 1 0.01
35 87 0.88
36 11 0.11
ACGTcount: A:0.41, C:0.28, G:0.11, T:0.20
Consensus pattern (35 bp):
AAAACACACCAATGCTCATAAGAGCTAATCCATCT
Found at i:36967848 original size:53 final size:52
Alignment explanation
Indices: 36967765--36967873 Score: 200
Period size: 53 Copynumber: 2.1 Consensus size: 52
36967755 AAAGGGATTC
36967765 AAAATATTGTTTTTTAGTTTTTAATAGGCTCAAAAATATTTTTCTAACTTTT
1 AAAATATTGTTTTTTAGTTTTTAATAGGCTCAAAAATATTTTTCTAACTTTT
*
36967817 AAAATATTGTTTTTTTAGTTTTTAATGGGCTCAAAAATATTTTTCTAACTTTT
1 AAAATATTG-TTTTTTAGTTTTTAATAGGCTCAAAAATATTTTTCTAACTTTT
36967870 AAAA
1 AAAA
36967874 GTCAAACAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
52 9 0.16
53 46 0.84
ACGTcount: A:0.34, C:0.07, G:0.08, T:0.50
Consensus pattern (52 bp):
AAAATATTGTTTTTTAGTTTTTAATAGGCTCAAAAATATTTTTCTAACTTTT
Found at i:36967974 original size:32 final size:32
Alignment explanation
Indices: 36967920--36968000 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 32
36967910 ACAAAAATAG
* *
36967920 CTTTTAAAGG-CCCAAAAAATTTTTGT-ACCAA
1 CTTTTAAGGGACCTAAAAAATTTTT-TCACCAA
*
36967951 CTTTTAAGGGACCTAAAAAATTTTTTCTCCAA
1 CTTTTAAGGGACCTAAAAAATTTTTTCACCAA
**
36967983 CTTTTAAGAAACCTAAAA
1 CTTTTAAGGGACCTAAAA
36968001 TCTCATTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
31 10 0.23
32 33 0.77
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (32 bp):
CTTTTAAGGGACCTAAAAAATTTTTTCACCAA
Found at i:36970624 original size:49 final size:49
Alignment explanation
Indices: 36970506--36970780 Score: 228
Period size: 49 Copynumber: 5.7 Consensus size: 49
36970496 AGGGTATGAT
* * * * *
36970506 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGC--TCACATATCT-AA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTAGCTTTCATATAT-TGAG
* * * *
36970554 GTCGATGTCATGCCCCAGACAGGTCTTACACT-GACTTTCATATATCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAG-CTTTCATATATTGAG
* * *
36970603 GCCGACGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATTTATTG-G
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATTGAG
* * * *
36970651 TGTCGATGCCATGTCCCAGACAGGTCTTCCACTAGCTTGCATATCTTGAG
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATTGAG
* * * *
36970701 GCCGATG-CATGTCCCAGACATGTCTTACATTGGCTCTCATA-A-T-ATG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATTGA-G
* * *
36970747 GCCAATG-CATGTCCCATACATGTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGC
36970781 ACACATATCA
Statistics
Matches: 185, Mismatches: 34, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 33 0.18
47 12 0.06
48 45 0.24
49 92 0.50
50 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATTGAG
Found at i:36970674 original size:98 final size:97
Alignment explanation
Indices: 36970554--36970740 Score: 259
Period size: 98 Copynumber: 1.9 Consensus size: 97
36970544 ACATATCTAA
* *
36970554 GTCGATGTCATGCCCCAGACAGGTCTTACACT-GACTTTCATATATCGAGGCCGACGCCATGTCC
1 GTCGATGCCATGCCCCAGACAGGTCTTACACTAG-CTTGCATATATCGAGGCCGACG-CATGTCC
36970618 CAGACAGGTCTTACACTAGCTCTCATTTATTGGT
64 CAGACAGGTCTTACACTAGCTCTCATTTATTGGT
* * * * *
36970652 GTCGATGCCATGTCCCAGACAGGTCTTCCACTAGCTTGCATATCTTGAGGCCGATGCATGTCCCA
1 GTCGATGCCATGCCCCAGACAGGTCTTACACTAGCTTGCATATATCGAGGCCGACGCATGTCCCA
* * *
36970717 GACATGTCTTACATTGGCTCTCAT
66 GACAGGTCTTACACTAGCTCTCAT
36970741 AATATGGCCA
Statistics
Matches: 78, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
97 30 0.38
98 47 0.60
99 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (97 bp):
GTCGATGCCATGCCCCAGACAGGTCTTACACTAGCTTGCATATATCGAGGCCGACGCATGTCCCA
GACAGGTCTTACACTAGCTCTCATTTATTGGT
Found at i:36974340 original size:31 final size:31
Alignment explanation
Indices: 36974302--36974373 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
36974292 TAAAAGAGAG
*
36974302 AATTTTTGGAAAAAGTAATGTTATGAAATTA
1 AATTTTTGGAAAAAGTAAGGTTATGAAATTA
*
36974333 AATTTTTGGAAAAAGTACGGTTATGAAATTA
1 AATTTTTGGAAAAAGTAAGGTTATGAAATTA
36974364 ACATATTTTG
1 A-AT-TTTTG
36974374 TGCATCTCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 30 0.81
32 2 0.05
33 5 0.14
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.39
Consensus pattern (31 bp):
AATTTTTGGAAAAAGTAAGGTTATGAAATTA
Found at i:36980678 original size:29 final size:29
Alignment explanation
Indices: 36980646--36980714 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
36980636 TAAGGGTTAA
*
36980646 TTTCAATTTTTG-AATATTATTTAATATTT
1 TTTCAATTTTTGTAATATTAATTAAT-TTT
* *
36980675 TTTC-ATTTATGTAATTTTAATTAATTTT
1 TTTCAATTTTTGTAATATTAATTAATTTT
*
36980703 TTTATAATTTTT
1 TTT-CAATTTTT
36980715 TATAATAGTC
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
28 12 0.38
29 15 0.47
30 5 0.16
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (29 bp):
TTTCAATTTTTGTAATATTAATTAATTTT
Found at i:36980979 original size:16 final size:16
Alignment explanation
Indices: 36980958--36980990 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
36980948 AAAGATTCAT
36980958 TTTTATTATATTTTTA
1 TTTTATTATATTTTTA
36980974 TTTTATTATATTTTTA
1 TTTTATTATATTTTTA
36980990 T
1 T
36980991 GGTCTATAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTATTATATTTTTA
Found at i:36985519 original size:62 final size:60
Alignment explanation
Indices: 36985403--36985519 Score: 146
Period size: 62 Copynumber: 1.9 Consensus size: 60
36985393 TTGTACAAAC
* * ****
36985403 TATTTTTATATTATTTCATTTAATAAAATAAAAGTTGTTTTGAATATTTTAATAGTCAAT
1 TATTTTTATATTATTTCATTTAATAAAATAAAAGTTCTTTTAAATAAGGAAATAGTCAAT
36985463 TATTTTTATA-TATTATCCTATTTAATAAAATAAAAGTTCTTTTAAATAAGGAAATAG
1 TATTTTTATATTATT-T-C-ATTTAATAAAATAAAAGTTCTTTTAAATAAGGAAATAG
36985520 AAATAATACA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
59 4 0.08
60 11 0.23
61 1 0.02
62 32 0.67
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (60 bp):
TATTTTTATATTATTTCATTTAATAAAATAAAAGTTCTTTTAAATAAGGAAATAGTCAAT
Found at i:36988777 original size:127 final size:127
Alignment explanation
Indices: 36988518--36989042 Score: 639
Period size: 127 Copynumber: 4.2 Consensus size: 127
36988508 TAAAGCCAAG
** * * * * *
36988518 CAGGAACTGTTGTAGAAAAAGAGCGTCCACAT-AGGAG-ATTTTTAAGTAATTTT-TCTAACTGT
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGA-GAGCTTTTTTTAGTAATTTTGT-TGACAGT
* *
36988580 GCATACTGCTTGAAG--TGTTTTTGACACTATTTTTTTAGAACCGTCTTCTCAAAATTATTTTTT
64 GCATACTGCTTGAAGCAT-TTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * * *
36988643 TAGGAACTACTGTAGAAAAGGAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGTTGACAGTAC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTTAGTAATTTTGTTGACAGTGC
* * * * *
36988708 ATACTACTTGAAGCGTTTTTTTACATTATTTTTTCAGAACCATCTTCTCAGAATTATTTTTT
66 ATACTGCTTGAAGCATTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * *
36988770 CAGGAACTATTGTAGAAAAAGAGCGTCTACGTGGGAGCTTTTTTTAGTAATTTTGTTGACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTTAGTAATTTTGTTGACAGTGC
* * * *
36988835 ATACTGCTTGAAGCATTTTTTTACATTATTTTTTCAGAATCGTATTCTTAAAATTATTTTTT
66 ATACTGCTTGAAGCATTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
** * * * *
36988897 CAAAAACTACTGTAGAAAAAGAGCGTCCATGTGAGAGCTTTTTTTAGTACTTTTGCTGATAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTTAGTAATTTTGTTGACAGTGC
* * * * *
36988962 ATCCTGCTTGAAGCATTTATGT-CACTATTTTTTCAAAACCGTCTTCTCAAAATTAATTTTT
66 ATACTGCTTGAAGCATTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* *
36989023 CAGAAACTGCTGTAGAAAAA
1 CAGGAACTACTGTAGAAAAA
36989043 AAACCAAAAT
Statistics
Matches: 345, Mismatches: 50, Indels: 9
0.85 0.12 0.02
Matches are distributed among these distances:
125 30 0.09
126 84 0.24
127 230 0.67
128 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (127 bp):
CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTTAGTAATTTTGTTGACAGTGC
ATACTGCTTGAAGCATTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
Found at i:36989168 original size:34 final size:34
Alignment explanation
Indices: 36989137--36989234 Score: 128
Period size: 34 Copynumber: 2.9 Consensus size: 34
36989127 ATTATTTTTA
*
36989137 AAAAAACCTTAAACCTTAATTTAATTAATTTTCT
1 AAAAAACCCTAAACCTTAATTTAATTAATTTTCT
* *
36989171 TAAAAACCCTAAACCTTAATTTAATTAATTTACT
1 AAAAAACCCTAAACCTTAATTTAATTAATTTTCT
** *
36989205 TTAAAACCCTAAACC-AAATTTAA-TAATTTT
1 AAAAAACCCTAAACCTTAATTTAATTAATTTT
36989235 TTTTAAAAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
32 6 0.10
33 7 0.12
34 45 0.78
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (34 bp):
AAAAAACCCTAAACCTTAATTTAATTAATTTTCT
Found at i:36990351 original size:15 final size:15
Alignment explanation
Indices: 36990331--36990378 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
36990321 GTGATAGATC
36990331 TTAAATTATATAAAT
1 TTAAATTATATAAAT
*
36990346 TTAAATTTTATAAAT
1 TTAAATTATATAAAT
*
36990361 ATAAA-TAT-TAAAT
1 TTAAATTATATAAAT
36990374 TTAAA
1 TTAAA
36990379 CATAATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
13 9 0.31
14 2 0.07
15 18 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
TTAAATTATATAAAT
Found at i:36990390 original size:28 final size:30
Alignment explanation
Indices: 36990332--36990390 Score: 68
Period size: 28 Copynumber: 2.0 Consensus size: 30
36990322 TGATAGATCT
** *
36990332 TAAATTATATAAATTTAAATTTTATAAATA
1 TAAATTATATAAATTTAAACATAATAAATA
*
36990362 TAAA-TAT-TAAATTTAAACATAATATATA
1 TAAATTATATAAATTTAAACATAATAAATA
36990390 T
1 T
36990391 TTGAATCGCG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
28 18 0.72
29 3 0.12
30 4 0.16
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (30 bp):
TAAATTATATAAATTTAAACATAATAAATA
Found at i:36999192 original size:26 final size:26
Alignment explanation
Indices: 36999156--36999210 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
36999146 AAAAAGCACG
36999156 GAGTAGAAGAGGCTACATGGGAGCCC
1 GAGTAGAAGAGGCTACATGGGAGCCC
36999182 GAGTAGAAGAGGCTACATGGGAGCCC
1 GAGTAGAAGAGGCTACATGGGAGCCC
36999208 GAG
1 GAG
36999211 GAAACTATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.18, G:0.40, T:0.11
Consensus pattern (26 bp):
GAGTAGAAGAGGCTACATGGGAGCCC
Found at i:37003654 original size:49 final size:50
Alignment explanation
Indices: 37003574--37003820 Score: 284
Period size: 49 Copynumber: 5.0 Consensus size: 50
37003564 ATCTATTGTG
* *
37003574 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATT
* *** **
37003624 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAA-TT
* * * **
37003674 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAATT
**
37003724 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATT
** * *
37003774 -GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTAGATAA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAA
37003821 CCTTGTCTAC
Statistics
Matches: 163, Mismatches: 30, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
49 81 0.50
50 46 0.28
51 36 0.22
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATT
Found at i:37003771 original size:101 final size:99
Alignment explanation
Indices: 37003577--37003820 Score: 323
Period size: 100 Copynumber: 2.5 Consensus size: 99
37003567 TATTGTGAGG
* *
37003577 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGTCACATGTGTAGTACT
*
37003642 AAGTGCAGGCTACTATACGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTACACGTACCCGATAA-TTCGA
**
37003677 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAATT-GGTCACATGTGTAGTA
** * * *
37003741 CTAAGTGCAGGCTACTACGTGTACCGGATAATTGGT
64 CTAAGTGCAGGCTACTACACGTACCCGATAATTCGA
* *
37003777 TGCA--TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTAGATAA
1 T-CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAA
37003821 CCTTGTCTAC
Statistics
Matches: 126, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
99 35 0.28
100 47 0.37
101 44 0.35
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACACGTACCCGATAATTCGA
Found at i:37004204 original size:18 final size:18
Alignment explanation
Indices: 37004183--37004218 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
37004173 CAGGGGAAGC
37004183 AAAAGAGTTCTATATTAT
1 AAAAGAGTTCTATATTAT
37004201 AAAAGAGTTCTATATTAT
1 AAAAGAGTTCTATATTAT
37004219 GTGATATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (18 bp):
AAAAGAGTTCTATATTAT
Found at i:37008979 original size:20 final size:20
Alignment explanation
Indices: 37008938--37008980 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
37008928 AAAGGAAGCA
* *
37008938 AAAGAAGAAAAATAAAATGG
1 AAAGAAAAAAAAGAAAATGG
37008958 AAAGAAAAAGAAAGAAAA-GG
1 AAAGAAAAA-AAAGAAAATGG
37008978 AAA
1 AAA
37008981 ATGGGAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (20 bp):
AAAGAAAAAAAAGAAAATGG
Found at i:37008981 original size:27 final size:24
Alignment explanation
Indices: 37008937--37008996 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 24
37008927 GAAAGGAAGC
*
37008937 AAAAG-AAGAAAAATAAAATGGAAAGA
1 AAAAGAAAGAAAAAGAAAATGG---GA
*
37008963 AAAAGAAAGAAAAGGAAAATGGGA
1 AAAAGAAAGAAAAAGAAAATGGGA
37008987 AAAAGAAAGA
1 AAAAGAAAGA
37008997 GGAAGGTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 12 0.39
26 5 0.16
27 14 0.45
ACGTcount: A:0.72, C:0.00, G:0.23, T:0.05
Consensus pattern (24 bp):
AAAAGAAAGAAAAAGAAAATGGGA
Found at i:37011058 original size:26 final size:26
Alignment explanation
Indices: 37011026--37011081 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
37011016 TCTTCTTCCT
37011026 TTTCTTTCTT-TTCTCATATTCACCAC
1 TTTCTTT-TTCTTCTCATATTCACCAC
* * *
37011052 TTTCTTTTTCTTTTCATTTTCTCCAC
1 TTTCTTTTTCTTCTCATATTCACCAC
37011078 TTTC
1 TTTC
37011082 ATCTACTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.11, C:0.29, G:0.00, T:0.61
Consensus pattern (26 bp):
TTTCTTTTTCTTCTCATATTCACCAC
Found at i:37025066 original size:3 final size:3
Alignment explanation
Indices: 37025058--37025105 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
37025048 AATAGGGACT
37025058 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37025106 AGAGCTAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:37037818 original size:39 final size:39
Alignment explanation
Indices: 37037747--37037839 Score: 132
Period size: 39 Copynumber: 2.4 Consensus size: 39
37037737 GTGTTTGAGA
*
37037747 TAGAAAAATATCCGGACATGAGATCCGCAGGCTATATGC
1 TAGAAAAATATCCGGACATGAGATCCGCAGGCTACATGC
* * * * *
37037786 TAGAAATATATCCGTACTTGAGGTCCGTAGGCTACATGC
1 TAGAAAAATATCCGGACATGAGATCCGCAGGCTACATGC
37037825 TAGAAAAATATCCGG
1 TAGAAAAATATCCGG
37037840 GTTAAAGACC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (39 bp):
TAGAAAAATATCCGGACATGAGATCCGCAGGCTACATGC
Found at i:37045793 original size:39 final size:39
Alignment explanation
Indices: 37045727--37045817 Score: 128
Period size: 39 Copynumber: 2.3 Consensus size: 39
37045717 GTGTTTGAGA
* *
37045727 TAGAAAAATATCCGGACATGAGATCCGCAGGCTATATGC
1 TAGAAAAATATCCAGACATGAGATCCGCAGGCTACATGC
* * * *
37045766 TAGAAATATATCCAGACTTGAGGTCCGCAGGCTGCATGC
1 TAGAAAAATATCCAGACATGAGATCCGCAGGCTACATGC
37045805 TAGAAAAATATCC
1 TAGAAAAATATCC
37045818 TGGTTAAAGA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (39 bp):
TAGAAAAATATCCAGACATGAGATCCGCAGGCTACATGC
Found at i:37054288 original size:42 final size:42
Alignment explanation
Indices: 37054169--37054330 Score: 191
Period size: 42 Copynumber: 3.8 Consensus size: 42
37054159 CCGTACCAAT
* * *
37054169 GCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCGAC
1 GCCATATCCCAGATATGGTCTTACACGAAATCTCATATCGAC
* * * *
37054211 GCCAATAGT-CCAGCTATGGTCTTACACGAAGTCTCATATAGAT
1 GCC-ATA-TCCCAGATATGGTCTTACACGAAATCTCATATCGAC
* *
37054254 GCCATATCCCAGATATAGTCTTACACGAAATCTCATACCGAC
1 GCCATATCCCAGATATGGTCTTACACGAAATCTCATATCGAC
* * *
37054296 ACCATATGCCAGATATGGTCTTACACGTAATCTCA
1 GCCATATCCCAGATATGGTCTTACACGAAATCTCA
37054331 ACTAACCCTA
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 65 0.65
43 33 0.33
44 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTACACGAAATCTCATATCGAC
Found at i:37057255 original size:46 final size:46
Alignment explanation
Indices: 37057188--37057363 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
37057178 TGTAACCCGC
*
37057188 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * *
37057234 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCG---GAC--GTTCGCAT
* * * *
37057284 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
37057327 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
37057364 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 62 0.57
47 25 0.23
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:37057307 original size:93 final size:93
Alignment explanation
Indices: 37057195--37057367 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
37057185 CGCCCATAAG
* *
37057195 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
37057260 ACGAGCTCGAATGCCTAGTTACATCTCA
66 ACGAGCTCGAATGCCTAGTTACATCTCA
* *
37057288 CGAACTCGGACTCAACTCAATGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
37057353 ACGAGTTCGGATGCC
66 ACGAGCTCGAATGCC
37057368 CAAATATCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGAATGCCTAGTTACATCTCA
Found at i:37057382 original size:46 final size:45
Alignment explanation
Indices: 37057239--37057382 Score: 121
Period size: 46 Copynumber: 3.1 Consensus size: 45
37057229 CGCATCCATA
* * * *
37057239 AGTGAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * * *
37057287 A-CGAACTCGGACTCAACTCAATGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
37057332 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
37057378 AGTGA
1 AGTGA
37057383 CATGTCACTT
Statistics
Matches: 74, Mismatches: 17, Indels: 12
0.72 0.17 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 36 0.49
47 28 0.38
48 5 0.07
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:37060619 original size:28 final size:27
Alignment explanation
Indices: 37060575--37060678 Score: 95
Period size: 28 Copynumber: 3.7 Consensus size: 27
37060565 CTGCACAATC
*
37060575 GATGTCTT-GCACGCTAAGTGCTATACCG
1 GATGT-TTCGCACACTAAGTGCTAT-CCG
* *
37060603 GATGTTTCGCACACTAAGTGCCATCCTC
1 GATGTTTCGCACACTAAGTGCTATCC-G
** *
37060631 GATACTTCGCACACTAAGTG-TCATTTCG
1 GATGTTTCGCACACTAAGTGCT-A-TCCG
37060659 GATGTTTCGCACACTAAGTG
1 GATGTTTCGCACACTAAGTG
37060679 TCATCATCAA
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
27 4 0.06
28 56 0.90
29 2 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (27 bp):
GATGTTTCGCACACTAAGTGCTATCCG
Found at i:37060730 original size:54 final size:55
Alignment explanation
Indices: 37060601--37060756 Score: 226
Period size: 54 Copynumber: 2.8 Consensus size: 55
37060591 AGTGCTATAC
* *
37060601 CGGATGTTTCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGTCATTT
1 CGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTCACACACT-AGTGTCATTT
* * *
37060657 CGGATGTTTCGCACACTAAGTGTCATCATCAATACTTCATACACT-GTGTCATTT
1 CGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTCACACACTAGTGTCATTT
*
37060711 CGGATGTCTT-GCACACTAAGTGCCATCCTCAATACTTCGCACACTA
1 CGGATGT-TTCGCACACTAAGTGCCATCCTCAATACTTCACACACTA
37060757 AGTGCCGTTC
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
54 47 0.53
55 2 0.02
56 40 0.45
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (55 bp):
CGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTCACACACTAGTGTCATTT
Found at i:37060761 original size:28 final size:28
Alignment explanation
Indices: 37060608--37060762 Score: 131
Period size: 28 Copynumber: 5.6 Consensus size: 28
37060598 TACCGGATGT
37060608 TTCGCACACTAAGTGCCATCCTCGATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
* * **
37060636 TTCGCACACTAAGTGTCAT-TTCGGATGT
1 TTCGCACACTAAGTGCCATCCTC-GATAC
* * *
37060664 TTCGCACACTAAGTGTCATCATCAATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
** * * *
37060692 TTCATACACT--GTGTCAT-TTCGGATGTC
1 TTCGCACACTAAGTGCCATCCTC-GAT-AC
*
37060719 TT-GCACACTAAGTGCCATCCTCAATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
37060746 TTCGCACACTAAGTGCC
1 TTCGCACACTAAGTGCC
37060763 GTTCGTTTGG
Statistics
Matches: 100, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
25 2 0.02
26 14 0.14
27 8 0.08
28 72 0.72
29 4 0.04
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.30
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGATAC
Found at i:37063814 original size:51 final size:51
Alignment explanation
Indices: 37063732--37063831 Score: 121
Period size: 52 Copynumber: 2.0 Consensus size: 51
37063722 ATGAACAAAT
* *
37063732 GAGTTACTTAATACATGACATAACTTAATGATGTAAACTTTAACTAACATAG
1 GAGTTACATAATACATGACATAACTTAATGATGCAAAC-TTAACTAACATAG
* * * * *
37063784 GAGTTACATAATGCATGTCATCA-TTTATGATGCAAACTTAAGTAACAT
1 GAGTTACATAATACATGACATAACTTAATGATGCAAACTTAACTAACAT
37063832 GATGTCTTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 10 0.24
51 12 0.29
52 19 0.46
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33
Consensus pattern (51 bp):
GAGTTACATAATACATGACATAACTTAATGATGCAAACTTAACTAACATAG
Found at i:37081720 original size:40 final size:40
Alignment explanation
Indices: 37081659--37081831 Score: 177
Period size: 40 Copynumber: 4.3 Consensus size: 40
37081649 ACATGGATCT
* * * *
37081659 ACCGTTGTGCTATCAGGAGTACAAAAGTACAGTCAGGAGC
1 ACCGTTGTGCTATTAGGAGTACAAAAGTACGGTTAAGAGC
*
37081699 ACCGTTGTGCTATTAGTAGTACAAAAGTACGGTTAAGAGC
1 ACCGTTGTGCTATTAGGAGTACAAAAGTACGGTTAAGAGC
* * * * *
37081739 ATTC-TTGAGCTATTAGGAGTACGAAAGTATGGTTAGGAGC
1 A-CCGTTGTGCTATTAGGAGTACAAAAGTACGGTTAAGAGC
** ** **
37081779 ATTGTTGTGCTATTAGGAGTATGAAAGTATTGTTAAGAGC
1 ACCGTTGTGCTATTAGGAGTACAAAAGTACGGTTAAGAGC
*
37081819 ACCGTAGTGCTAT
1 ACCGTTGTGCTAT
37081832 CAAGAGCACT
Statistics
Matches: 112, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 110 0.98
41 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (40 bp):
ACCGTTGTGCTATTAGGAGTACAAAAGTACGGTTAAGAGC
Found at i:37081831 original size:80 final size:80
Alignment explanation
Indices: 37081659--37081833 Score: 199
Period size: 80 Copynumber: 2.2 Consensus size: 80
37081649 ACATGGATCT
*
37081659 ACCGTTGTGCTATCAGGAGTACAAAAGTACAGTCAGGAGCACCGTTGTGCTATTAGTAGTACAAA
1 ACCGTTGTGCTATCAGGAGTACAAAAGTACAGTCAGGAGCACCGTTGTGCTATTAGGAGTACAAA
37081724 AGTACGGTTAAGAGC
66 AGTACGGTTAAGAGC
* * * * ** * ** **
37081739 ATTC-TTGAGCTATTAGGAGTACGAAAGTATGGTTAGGAGCATTGTTGTGCTATTAGGAGTATGA
1 A-CCGTTGTGCTATCAGGAGTACAAAAGTACAGTCAGGAGCACCGTTGTGCTATTAGGAGTACAA
**
37081803 AAGTATTGTTAAGAGC
65 AAGTACGGTTAAGAGC
*
37081819 ACCGTAGTGCTATCA
1 ACCGTTGTGCTATCA
37081834 AGAGCACTTA
Statistics
Matches: 75, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
79 1 0.01
80 73 0.97
81 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (80 bp):
ACCGTTGTGCTATCAGGAGTACAAAAGTACAGTCAGGAGCACCGTTGTGCTATTAGGAGTACAAA
AGTACGGTTAAGAGC
Found at i:37083468 original size:24 final size:24
Alignment explanation
Indices: 37083436--37083507 Score: 126
Period size: 24 Copynumber: 3.0 Consensus size: 24
37083426 TGACATTGCG
* *
37083436 CTAAGTGAAATAAGACTATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
37083460 CTAAGTGAAATAAGTCCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
37083484 CTAAGTGAAATAAGTCCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
37083508 TGTGCTAAGT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:37083604 original size:51 final size:51
Alignment explanation
Indices: 37083543--37083793 Score: 335
Period size: 51 Copynumber: 4.9 Consensus size: 51
37083533 TGAACCTTAG
* *
37083543 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCATTTTTT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * **
37083594 AAATATAATAGCTTTGGACACAAGTGT-GTGACTATGTGAACACCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGT-ACTATGTGAAGGCCACTTTGT
* * * *
37083645 GAATATAATAGCTTTGGACACAAGTGTGGTACTATATGAAGGCCACTATAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
37083696 GAATAAAATAGCTTTGCATACAAGTGTGGTACTATGTGAAGGACACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
37083747 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGTCACT
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCACT
37083794 GTGTATCCGT
Statistics
Matches: 174, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
50 2 0.01
51 170 0.98
52 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:37087376 original size:30 final size:30
Alignment explanation
Indices: 37087331--37087390 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37087321 ATTTAATACG
*
37087331 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
37087361 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
37087391 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:37098208 original size:27 final size:26
Alignment explanation
Indices: 37098178--37098255 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
37098168 AGATTTTGTT
*
37098178 ATACCTACTGCTCCTTCAGAGTTCGCC
1 ATACATACT-CTCCTTCAGAGTTCGCC
* *
37098205 ATACATACTATCCCTTCAGTGTTCGCC
1 ATACATACTCT-CCTTCAGAGTTCGCC
*
37098232 ACACATACTATCTCCTT-AGAGTTC
1 ATACATAC--TCTCCTTCAGAGTTC
37098256 ATTGGGAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 35 0.83
28 4 0.10
29 2 0.05
ACGTcount: A:0.23, C:0.33, G:0.12, T:0.32
Consensus pattern (26 bp):
ATACATACTCTCCTTCAGAGTTCGCC
Found at i:37099757 original size:21 final size:20
Alignment explanation
Indices: 37099733--37099780 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
37099723 GATGACTTTT
37099733 AAATAATTTTTTATTAAGTAA
1 AAAT-ATTTTTTATTAAGTAA
*
37099754 AAATA--TTTTAATAAGTAA
1 AAATATTTTTTATTAAGTAA
37099772 AAATATTTT
1 AAATATTTT
37099781 ATTAATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 17 0.71
20 3 0.12
21 4 0.17
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (20 bp):
AAATATTTTTTATTAAGTAA
Found at i:37099768 original size:18 final size:18
Alignment explanation
Indices: 37099741--37099781 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
37099731 TTAAATAATT
*
37099741 TTTTATTAAGTAAAAATA
1 TTTTAATAAGTAAAAATA
37099759 TTTTAATAAGTAAAAATA
1 TTTTAATAAGTAAAAATA
37099777 TTTTA
1 TTTTA
37099782 TTAATTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (18 bp):
TTTTAATAAGTAAAAATA
Found at i:37101203 original size:16 final size:17
Alignment explanation
Indices: 37101182--37101214 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37101172 TCAATATCAA
37101182 AATATTA-AAGTTTATT
1 AATATTACAAGTTTATT
*
37101198 AATATTACAATTTTATT
1 AATATTACAAGTTTATT
37101215 TTATTGTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (17 bp):
AATATTACAAGTTTATT
Found at i:37105130 original size:27 final size:27
Alignment explanation
Indices: 37105108--37105396 Score: 294
Period size: 27 Copynumber: 10.7 Consensus size: 27
37105098 TTAGTTTACC
37105108 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* ** * *
37105135 AAATTACTAAAATATTCTTAGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
37105162 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
** * **
37105189 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
37105216 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
37105243 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
37105270 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
37105297 AAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* **
37105324 AAATTACTAAAATACCCCTA-TAAGGTA
1 AAATTACCAAAATACCCCTAGT-TTGTA
* * **
37105351 GAATTACCAGAATACCCCTA-TAGGGTA
1 AAATTACCAAAATACCCCTAGT-TTGTA
**
37105378 AAATTACCGGAATACCCCT
1 AAATTACCAAAATACCCCT
37105397 GTAGGGTAGA
Statistics
Matches: 222, Mismatches: 39, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 1 0.00
27 221 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:37105180 original size:54 final size:54
Alignment explanation
Indices: 37105108--37105343 Score: 364
Period size: 54 Copynumber: 4.4 Consensus size: 54
37105098 TTAGTTTACC
** *
37105108 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATATTCTTAGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * *
37105162 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
*
37105216 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
37105270 AAATCACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
*
37105324 AAATTACTAAAATACCCCTA
1 AAATTACCAAAATACCCCTA
37105344 TAAGGTAGAA
Statistics
Matches: 166, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 166 1.00
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:37105245 original size:81 final size:81
Alignment explanation
Indices: 37105108--37105342 Score: 335
Period size: 81 Copynumber: 2.9 Consensus size: 81
37105098 TTAGTTTACC
** * * * *
37105108 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATATTCTTAGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAA
*
37105173 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTATA
** * ** *
37105189 AAATTACCAAAATACCATTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAA
*
37105254 ATACCCTTGGTTTATA
66 ATACCCCTGGTTTATA
*
37105270 AAATCACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAA
37105335 ATACCCCT
66 ATACCCCT
37105343 ATAAGGTAGA
Statistics
Matches: 132, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 132 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAA
ATACCCCTGGTTTATA
Found at i:37105379 original size:81 final size:81
Alignment explanation
Indices: 37105215--37105735 Score: 471
Period size: 81 Copynumber: 6.4 Consensus size: 81
37105205 ATTGGTTTAC
** * * *** * *
37105215 AAAATTACCAAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCTTGGT-TTATAAAATCACC
1 AAAATTACCAAAATACCCCT-GTAGGGTAGAATTACTAAAATACCCCT-GTAGGGTAGAATTACC
* **
37105278 AAAATACCCCTAGT-TTGT
64 GAAATACCCCTA-TAGGGT
* ** * * *
37105296 AAAATTACTAAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCCTATAAGGTAGAATTACC-
1 AAAATTACCAAAATACCCCT-GTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCG
37105359 AGAATACCCCTATAGGGT
65 A-AATACCCCTATAGGGT
** *** * * *
37105377 AAAATTACCGGAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAAAATTATCGG
1 AAAATTACCAAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGA
* *
37105442 AATACCCCTGTAGGAT
66 AATACCCCTATAGGGT
* * * * *** ** *
37105458 AGAATTACTAGAATACCCCTATAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTATTGC
1 AAAATTACCAAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGA
* *
37105523 AACACCCCTGTAGGGT
66 AATACCCCTATAGGGT
* * *
37105539 AGAATTACCGAAATACCCCTGTAGGGTAGAATTAC-AGAAATACCCCTGTAGGGTAGAATTATCG
1 AAAATTACCAAAATACCCCTGTAGGGTAGAATTACTA-AAATACCCCTGTAGGGTAGAATTACCG
*
37105603 AAATACCCCTGTAGGGT
65 AAATACCCCTATAGGGT
* * **
37105620 AAAATTACCGAAATACCCCTATAGGGTAGAATTA-TCGCAATACCCCTGTAGGGTAGAATTACCG
1 AAAATTACCAAAATACCCCTGTAGGGTAGAATTACT-AAAATACCCCTGTAGGGTAGAATTACCG
37105684 AAATACCCCTATAGGGT
65 AAATACCCCTATAGGGT
* * *
37105701 AGAATTACTAAAATACCCCTGTAGGGTGGAATTAC
1 AAAATTACCAAAATACCCCTGTAGGGTAGAATTAC
37105736 CGAGATACCT
Statistics
Matches: 376, Mismatches: 55, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
80 5 0.01
81 371 0.99
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGA
AATACCCCTATAGGGT
Found at i:37105401 original size:27 final size:27
Alignment explanation
Indices: 37105334--37105737 Score: 529
Period size: 27 Copynumber: 15.0 Consensus size: 27
37105324 AAATTACTAA
* * *
37105334 AATACCCCTATAAGGTAGAATTACCAG
1 AATACCCCTGTAGGGTAGAATTACCGG
* *
37105361 AATACCCCTATAGGGTAAAATTACCGG
1 AATACCCCTGTAGGGTAGAATTACCGG
37105388 AATACCCCTGTAGGGTAGAATTACCGG
1 AATACCCCTGTAGGGTAGAATTACCGG
* *
37105415 AATACCCCTGTAGGGTAAAATTATCGG
1 AATACCCCTGTAGGGTAGAATTACCGG
* **
37105442 AATACCCCTGTAGGATAGAATTACTAG
1 AATACCCCTGTAGGGTAGAATTACCGG
*
37105469 AATACCCCTATAGGGTAGAATTACCGG
1 AATACCCCTGTAGGGTAGAATTACCGG
** *
37105496 AATACCCCTGTAGGGTAGAATTATTGC
1 AATACCCCTGTAGGGTAGAATTACCGG
* *
37105523 AACACCCCTGTAGGGTAGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGG
* *
37105550 AATACCCCTGTAGGGTAGAATTACAGA
1 AATACCCCTGTAGGGTAGAATTACCGG
* *
37105577 AATACCCCTGTAGGGTAGAATTATCGA
1 AATACCCCTGTAGGGTAGAATTACCGG
* *
37105604 AATACCCCTGTAGGGTAAAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGG
* * *
37105631 AATACCCCTATAGGGTAGAATTATCGC
1 AATACCCCTGTAGGGTAGAATTACCGG
*
37105658 AATACCCCTGTAGGGTAGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGG
* ***
37105685 AATACCCCTATAGGGTAGAATTACTAA
1 AATACCCCTGTAGGGTAGAATTACCGG
*
37105712 AATACCCCTGTAGGGTGGAATTACCG
1 AATACCCCTGTAGGGTAGAATTACCG
37105738 AGATACCTTA
Statistics
Matches: 333, Mismatches: 44, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 333 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAGAATTACCGG
Found at i:37106241 original size:22 final size:22
Alignment explanation
Indices: 37106189--37106253 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
37106179 TTAAAGCCTT
*
37106189 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
37106211 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
37106233 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTTTGTGCCAA
37106254 ACGTATGTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:37106428 original size:27 final size:27
Alignment explanation
Indices: 37106398--37106499 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
37106388 ATTCTGTTAA
*
37106398 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
*
37106425 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTTTGCCAC-AATATCTGTTTCTG
* *
37106452 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
* *
37106479 GTGACTTTGTCACAATATCTG
1 GTGGCTTTGCCACAATATCTG
37106500 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTGTTTCTG
Found at i:37106687 original size:31 final size:31
Alignment explanation
Indices: 37106636--37106707 Score: 126
Period size: 31 Copynumber: 2.3 Consensus size: 31
37106626 TTGCATTCAC
37106636 ATTCTGATTTTTAATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTAATTCTGTTACCTGATACTG
*
37106668 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTAATTCTGTTACCTGATACTG
37106699 ATTCTGATT
1 ATTCTGATT
37106708 CTGTCAGCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
31 32 0.82
32 7 0.18
ACGTcount: A:0.21, C:0.15, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTAATTCTGTTACCTGATACTG
Found at i:37106724 original size:25 final size:25
Alignment explanation
Indices: 37106668--37106728 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
37106658 CCTGATACTG
* * *
37106668 ATTCTGATTTTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTA
* *
37106693 ATACTGATTCTGATTCTGTCAGCTA
1 ATTCTGATTCTGATTCTGTCACCTA
37106718 ATTCTGATTCT
1 ATTCTGATTCT
37106729 AGTTCTGATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:37106728 original size:6 final size:6
Alignment explanation
Indices: 37106659--37106710 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
37106649 ATTCTGTTAC
* * *
37106659 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
37106708 CTG
1 CTG
37106711 TCAGCTAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
5 2 0.05
6 32 0.84
7 3 0.08
8 1 0.03
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:37114282 original size:13 final size:13
Alignment explanation
Indices: 37114266--37114311 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
37114256 AAAATAATTC
37114266 TCAAAAGCACTTT
1 TCAAAAGCACTTT
* *
37114279 TCAATATCACTTT
1 TCAAAAGCACTTT
* *
37114292 TTAAGAGCACTTT
1 TCAAAAGCACTTT
37114305 TCAAAAG
1 TCAAAAG
37114312 TAATACTAAA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.35
Consensus pattern (13 bp):
TCAAAAGCACTTT
Found at i:37118264 original size:18 final size:18
Alignment explanation
Indices: 37118241--37118276 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
37118231 TTCCCGGGTG
37118241 ATAGTCATTTATCAGCTC
1 ATAGTCATTTATCAGCTC
* *
37118259 ATAGTCCTTTATTAGCTC
1 ATAGTCATTTATCAGCTC
37118277 TAACCACCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42
Consensus pattern (18 bp):
ATAGTCATTTATCAGCTC
Found at i:37123064 original size:26 final size:26
Alignment explanation
Indices: 37123031--37123080 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
37123021 TACGAACGTC
37123031 AAAATTAACTCACCAATTTTTTTAAA
1 AAAATTAACTCACCAATTTTTTTAAA
*
37123057 AAAATTAACTCACCATTTTTTTTA
1 AAAATTAACTCACCAATTTTTTTA
37123081 TACTCTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (26 bp):
AAAATTAACTCACCAATTTTTTTAAA
Found at i:37144914 original size:48 final size:48
Alignment explanation
Indices: 37144771--37144998 Score: 218
Period size: 48 Copynumber: 4.9 Consensus size: 48
37144761 GATTATGTGC
37144771 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATAT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATAT
* ** * * * ** *
37144819 AATTTCGTATAAGA-C-TGTAACTGGG-C-T---ATCGGCATTGATATGT
1 GATCCCATGTAAGACCATGT--CTGGGACATGGCATTGGCATCAATATAT
** * *
37144862 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATCTAC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATAT
* *
37144910 GATCCCATGTAAGACCATGTATGGGACATGGCATTGGCATCAATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATAT
* * * *
37144958 GATCTCATGTAAGACCATATCTGGGATATGACATTGGCATC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
37144999 TACCATGTGT
Statistics
Matches: 142, Mismatches: 29, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
43 26 0.18
44 2 0.01
45 4 0.03
46 4 0.03
47 2 0.01
48 104 0.73
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATAT
Found at i:37161789 original size:70 final size:70
Alignment explanation
Indices: 37161704--37161890 Score: 230
Period size: 70 Copynumber: 2.7 Consensus size: 70
37161694 CATTTGTGTC
* * * * * * **
37161704 CCCAGCATTATTCGAACGAGTCGAAAAATTATTGCACCCAGTGCTAGTTGGACAACCGACGATAA
1 CCCAGCACTAGTCGAACGAGTTGACAAATTATTGCGCCCAGCGCTAGCCGGACAACCGACGATAA
*
37161769 TTGTT
66 TTGTG
* * * *
37161774 CCCAGCACTAGTCGAACGAGTTGACAAATTATTGCGCCAAGCGCTAGCCGGATAACCGATGATAG
1 CCCAGCACTAGTCGAACGAGTTGACAAATTATTGCGCCCAGCGCTAGCCGGACAACCGACGATAA
37161839 TTGTG
66 TTGTG
* * *
37161844 CCCAGCACTAGTCGAACAAGTTGGCAAATTATTGCGCCCAGCACTAG
1 CCCAGCACTAGTCGAACGAGTTGACAAATTATTGCGCCCAGCGCTAG
37161891 TCGCATAATC
Statistics
Matches: 100, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
70 100 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (70 bp):
CCCAGCACTAGTCGAACGAGTTGACAAATTATTGCGCCCAGCGCTAGCCGGACAACCGACGATAA
TTGTG
Found at i:37161908 original size:70 final size:70
Alignment explanation
Indices: 37161757--37161910 Score: 218
Period size: 70 Copynumber: 2.2 Consensus size: 70
37161747 CTAGTTGGAC
* * * *
37161757 AACCGACGATAATTGTTCCCAGCACTAGTCGAACGAGTTGACAAATTATTGCGCCAAGCGCTAGC
1 AACCGACGATAGTTGTGCCCAGCACTAGTCGAACAAGTTGACAAATTATTGCGCCAAGCACTAGC
*
37161822 CGGAT
66 CGCAT
* * * *
37161827 AACCGATGATAGTTGTGCCCAGCACTAGTCGAACAAGTTGGCAAATTATTGCGCCCAGCACTAGT
1 AACCGACGATAGTTGTGCCCAGCACTAGTCGAACAAGTTGACAAATTATTGCGCCAAGCACTAGC
37161892 CGCAT
66 CGCAT
*
37161897 AATCGACGATAGTT
1 AACCGACGATAGTT
37161911 ACTCATCCAC
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (70 bp):
AACCGACGATAGTTGTGCCCAGCACTAGTCGAACAAGTTGACAAATTATTGCGCCAAGCACTAGC
CGCAT
Found at i:37162041 original size:36 final size:36
Alignment explanation
Indices: 37161961--37162031 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
37161951 TATCAAATTT
* *
37161961 CATATAAATACATAAACTTCCATTCAATTGAATTAA
1 CATATACATCCATAAACTTCCATTCAATTGAATTAA
*
37161997 CATATACATCCATAAACTTTCATTCAATTGAATTA
1 CATATACATCCATAAACTTCCATTCAATTGAATTA
37162032 GCAATTACAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.35
Consensus pattern (36 bp):
CATATACATCCATAAACTTCCATTCAATTGAATTAA
Found at i:37165265 original size:33 final size:34
Alignment explanation
Indices: 37165172--37165267 Score: 110
Period size: 33 Copynumber: 2.9 Consensus size: 34
37165162 CATGGCATCT
* *
37165172 ACAAAGTAAA-TCCATCAGGACAGTAAACACGAA
1 ACAAAGTAAAGTCCATCGGGACAGTAAACACAAA
* *
37165205 ACAAAGT-AAGTCTA-CTGGGATAGTAAACACAAA
1 ACAAAGTAAAGTCCATC-GGGACAGTAAACACAAA
*
37165238 AC-AAGTAAAGTCCATCGGGACATTAAACAC
1 ACAAAGTAAAGTCCATCGGGACAGTAAACAC
37165268 GGGCTCTGTT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
32 7 0.13
33 44 0.85
34 1 0.02
ACGTcount: A:0.48, C:0.20, G:0.17, T:0.16
Consensus pattern (34 bp):
ACAAAGTAAAGTCCATCGGGACAGTAAACACAAA
Found at i:37167243 original size:17 final size:17
Alignment explanation
Indices: 37167223--37167255 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37167213 ATTACTTTAA
*
37167223 TATTAATATTTTTTATT
1 TATTAAAATTTTTTATT
37167240 TATTAAAATTTTTTAT
1 TATTAAAATTTTTTAT
37167256 ATAATCATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TATTAAAATTTTTTATT
Found at i:37171421 original size:12 final size:12
Alignment explanation
Indices: 37171404--37171429 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37171394 TTCTACATGG
37171404 CTTACTGGACTA
1 CTTACTGGACTA
37171416 CTTACTGGACTA
1 CTTACTGGACTA
37171428 CT
1 CT
37171430 CTCTTTAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (12 bp):
CTTACTGGACTA
Found at i:37182290 original size:40 final size:39
Alignment explanation
Indices: 37182235--37182417 Score: 224
Period size: 40 Copynumber: 4.6 Consensus size: 39
37182225 TACTCGAATG
* *
37182235 ATATCCGGGCTAAGTCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCT-AGCGACT
*
37182275 ATATCCGGGCTAAGTCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCT-AGCGACT
* *
37182315 ACATCCGGACT-AGATCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGCGACT
* * *
37182354 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGCGACT
* *
37182394 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-TCCGAAGGC
37182418 CTTGTGCGAG
Statistics
Matches: 128, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 19 0.15
40 109 0.85
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGCGACT
Found at i:37182436 original size:79 final size:80
Alignment explanation
Indices: 37182271--37182453 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 80
37182261 TGTGCTAAGT
* * * *
37182271 GACTATATCCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGCGACTACATCCGGACTAGATCCGAA
1 GACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACCACATCCGGACTAGACCCGAA
* *
37182335 GGCATTTGTGCTAGC
66 GGCACTTGTGCGAGC
* * **
37182350 GACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACCATATCCGGGTTAAGACCCGA
1 GACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACCACATCCGGACT-AGACCCGA
*
37182414 AGGC-CTTGTGCGAGT
65 AGGCACTTGTGCGAGC
** **
37182429 GGTTATATCC-GGCTAAACCCCGAAG
1 GACTATATCCGGGCTAAGTCCCGAAG
37182454 ATGCTTGATT
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 13 0.15
79 48 0.55
80 26 0.30
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.24
Consensus pattern (80 bp):
GACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACCACATCCGGACTAGACCCGAA
GGCACTTGTGCGAGC
Found at i:37190468 original size:40 final size:41
Alignment explanation
Indices: 37190333--37190518 Score: 261
Period size: 41 Copynumber: 4.6 Consensus size: 41
37190323 TACTCGAATG
*
37190333 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
*
37190374 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
37190415 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* * *
37190455 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
37190495 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
37190519 CTTGTGCGAG
Statistics
Matches: 133, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 62 0.47
41 69 0.52
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
Found at i:37190475 original size:81 final size:82
Alignment explanation
Indices: 37190335--37190488 Score: 249
Period size: 81 Copynumber: 1.9 Consensus size: 82
37190325 CTCGAATGAT
* * *
37190335 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
*
37190400 TTGTGCTAAGCGACTAC
66 TTATGCTAAGCGACTAC
37190417 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
37190480 TTTATGCTA
65 TTTATGCTA
37190489 GTGACCATAT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
81 39 0.58
82 27 0.40
83 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (82 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCTAAGCGACTAC
Found at i:37193417 original size:21 final size:21
Alignment explanation
Indices: 37193393--37193495 Score: 134
Period size: 21 Copynumber: 4.9 Consensus size: 21
37193383 ATTGGGTGGA
** *
37193393 TCAGCTCTTGTGAGCTTTTGT
1 TCAGCTCTTACGAGCTTCTGT
*
37193414 TCAGCTCTTACAAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
*
37193435 TCAGCTCTTATGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
*
37193456 TAAGCTCTTACGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
* *
37193477 TTAGCTCTTACAAGCTTCT
1 TCAGCTCTTACGAGCTTCT
37193496 ATTGGCGTAT
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 72 1.00
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.42
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTTCTGT
Found at i:37197722 original size:20 final size:18
Alignment explanation
Indices: 37197675--37197723 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
37197665 CATGATAAAA
37197675 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
37197692 ATTAAGA-TAATTACTTTAAT
1 ATTAA-ATTAA-TA-TTTAAT
37197712 ATTAAATTAATA
1 ATTAAATTAATA
37197724 AAATACTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 4 0.15
20 14 0.52
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:37197987 original size:18 final size:17
Alignment explanation
Indices: 37197960--37198007 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
37197950 TCAAAACTCA
37197960 TTTCTTCAAAATTTTAAG
1 TTTC-TCAAAATTTTAAG
*
37197978 TTTCTCCAAATTTTTAAG
1 TTTCT-CAAAATTTTAAG
37197996 TTT-TCAAAATTT
1 TTTCTCAAAATTT
37198008 AAAATTTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 7 0.26
17 2 0.07
18 18 0.67
ACGTcount: A:0.31, C:0.12, G:0.04, T:0.52
Consensus pattern (17 bp):
TTTCTCAAAATTTTAAG
Found at i:37200428 original size:16 final size:15
Alignment explanation
Indices: 37200409--37200456 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
37200399 TAAAATTTGA
*
37200409 TTAAATCTTTTAAAAC
1 TTAAAT-TTTGAAAAC
37200425 TTAAATTTTGAAAAC
1 TTAAATTTTGAAAAC
*
37200440 ATAAAATTTTGAGAAAC
1 -TTAAATTTTGA-AAAC
37200457 GAGTTTTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 8 0.29
16 16 0.57
17 4 0.14
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (15 bp):
TTAAATTTTGAAAAC
Found at i:37200758 original size:58 final size:59
Alignment explanation
Indices: 37200684--37200840 Score: 253
Period size: 59 Copynumber: 2.7 Consensus size: 59
37200674 ATTCTTGCCG
**
37200684 GGGAATATTTACTGTTTACACCAGAGAATATTTCCTGTTCACTCGTC-TTTTTTTTACA
1 GGGAATATTTACTGTTTATGCCAGAGAATATTTCCTGTTCACTCGTCTTTTTTTTTACA
* **
37200742 GGGAATATTTATTGTTTATGCCAGAGAATATTTCCTGTTCACTCGTCTTTTTTTTTGTA
1 GGGAATATTTACTGTTTATGCCAGAGAATATTTCCTGTTCACTCGTCTTTTTTTTTACA
*
37200801 GGGAATATTTACTGTTTATGCCAGAGAATATTTCTTGTTC
1 GGGAATATTTACTGTTTATGCCAGAGAATATTTCCTGTTC
37200841 CTCTTCATTC
Statistics
Matches: 91, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
58 44 0.48
59 47 0.52
ACGTcount: A:0.23, C:0.15, G:0.17, T:0.45
Consensus pattern (59 bp):
GGGAATATTTACTGTTTATGCCAGAGAATATTTCCTGTTCACTCGTCTTTTTTTTTACA
Found at i:37204703 original size:15 final size:15
Alignment explanation
Indices: 37204683--37204713 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37204673 AGATGTTGTA
*
37204683 TGTAATTCGTCTATT
1 TGTAATTCATCTATT
37204698 TGTAATTCATCTATT
1 TGTAATTCATCTATT
37204713 T
1 T
37204714 TGGTAGATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.55
Consensus pattern (15 bp):
TGTAATTCATCTATT
Found at i:37209719 original size:46 final size:44
Alignment explanation
Indices: 37209669--37209844 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 44
37209659 TGTTTGGGCA
37209669 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* *** * *
37209715 TCCGAACTAGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAG
* *
37209762 TCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGATGGGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-GGAA-G
* * * *
37209808 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37209845 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
44 4 0.04
45 1 0.01
46 65 0.62
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:37209824 original size:93 final size:93
Alignment explanation
Indices: 37209665--37209836 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
37209655 AGGATGTTTG
* * *
37209665 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTAGTTGAG
1 GGCATCCGAACACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTAGTTGAG
37209730 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
37209758 GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGATGGGAACGCCCGAGCTCA-TTGA
1 GGCATCCGAACACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACT-AGTTGA
*
37209822 GTTGAGTCTGAGTTC
65 GTTGAGTCCGAGTTC
37209837 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTAGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:37222970 original size:24 final size:25
Alignment explanation
Indices: 37222910--37222975 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 25
37222900 CAAAAGAGCA
*
37222910 TCCCATTAT-TAGCCCTCT-CAAGCT
1 TCCCATTATATAGCTCT-TGCAAGCT
* *
37222934 TTCCATTATATAGTTCTTGCAAGCT
1 TCCCATTATATAGCTCTTGCAAGCT
*
37222959 TCCCGTTA-ATAGCTCTT
1 TCCCATTATATAGCTCTT
37222976 CGGAGCTTCT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 17 0.50
25 17 0.50
ACGTcount: A:0.21, C:0.29, G:0.11, T:0.39
Consensus pattern (25 bp):
TCCCATTATATAGCTCTTGCAAGCT
Found at i:37223109 original size:26 final size:25
Alignment explanation
Indices: 37223061--37223122 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 25
37223051 GCTCTACATG
* * *
37223061 AGCTTCCCGATTAAAGGCTCTTTGAA
1 AGCTTCCTGATTAAAGCCCCTTT-AA
* *
37223087 AGCTTCCTGATTAATGCCCCTTTAG
1 AGCTTCCTGATTAAAGCCCCTTTAA
*
37223112 AGCTACCTGAT
1 AGCTTCCTGAT
37223123 ATGGCTTGCT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 11 0.37
26 19 0.63
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (25 bp):
AGCTTCCTGATTAAAGCCCCTTTAA
Found at i:37223263 original size:25 final size:25
Alignment explanation
Indices: 37223234--37223302 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 25
37223224 ACTCTTATGT
* **
37223234 GCTTCCCGTTATATAGTTCGGATAA
1 GCTTCCCGTTATATAGCTCACATAA
* * *
37223259 GCTTCCCGTTACATGGCTCACATGA
1 GCTTCCCGTTATATAGCTCACATAA
*
37223284 GCTTCCCGTTATATGGCTC
1 GCTTCCCGTTATATAGCTC
37223303 GAGAGACAGA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.19, C:0.28, G:0.20, T:0.33
Consensus pattern (25 bp):
GCTTCCCGTTATATAGCTCACATAA
Found at i:37233242 original size:48 final size:48
Alignment explanation
Indices: 37233171--37233902 Score: 1221
Period size: 48 Copynumber: 15.0 Consensus size: 48
37233161 CAAGATAAAT
37233171 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
37233219 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
*
37233269 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
37233317 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
37233365 ATATGTATATGTGGTAAACCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
37233413 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
*
37233463 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
37233511 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATTTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
37233559 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
37233609 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
37233657 TTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
37233707 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
37233755 ATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
37233805 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
37233853 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
37233901 AT
1 AT
37233903 GTGTGTATAT
Statistics
Matches: 647, Mismatches: 27, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
48 407 0.63
49 20 0.03
50 220 0.34
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:37233894 original size:146 final size:144
Alignment explanation
Indices: 37233171--37233902 Score: 1239
Period size: 146 Copynumber: 5.0 Consensus size: 144
37233161 CAAGATAAAT
37233171 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
37233236 AGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
66 AGCCGAATGGCTAATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
37233301 GTGAAATATGTATGAG
129 GTGAAATATGTATGAG
*
37233317 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATTATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* * *
37233382 ACCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
*
37233447 GAAATATATATATGAG
131 G-AA-ATATGTATGAG
*
37233463 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
37233528 AGCCGAATGGCTAATGTGAAATATTTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
*
37233593 GAAATATATATATGAG
131 G-AA-ATATGTATGAG
*
37233609 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGTTATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
37233674 AGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
66 AGCCGAATGGCTAATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
37233739 GTGAAATATGTATGAG
129 GTGAAATATGTATGAG
* *
37233755 ATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATATATATATGAGATATGTATATGTGGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGT
* *
37233820 AAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
64 AAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
37233885 GTGAAATATGTAGGAG
129 GTGAAATATGTATGAG
37233901 AT
1 AT
37233903 GTGTGTATAT
Statistics
Matches: 559, Mismatches: 21, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
144 44 0.08
145 4 0.01
146 415 0.74
147 8 0.01
148 88 0.16
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (144 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
GAAATATGTATGAG
Found at i:37233912 original size:98 final size:96
Alignment explanation
Indices: 37233171--37233902 Score: 1221
Period size: 98 Copynumber: 7.5 Consensus size: 96
37233161 CAAGATAAAT
37233171 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
37233236 AGCCGAATGGCTAATGTGAAATATATATATGAG
66 AGCCGAATGGCTAATGTG-AA-ATATATATGAG
*
37233269 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
37233334 AGCCGAATGGCTAATGTGAATTATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATATATGAG
* *
37233365 ATATGTATATGTGGTAAACCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
37233430 AGCCGAATGGCTAATGTGAAATATATATATGAG
66 AGCCGAATGGCTAATGTG-AA-ATATATATGAG
*
37233463 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
37233528 AGCCGAATGGCTAATGTGAAATATTTATGAG
66 AGCCGAATGGCTAATGTGAAATATATATGAG
*
37233559 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGT
*
37233624 AAAGCCGAATGGCTAATGTGAAATATGTATGAG
64 AAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
37233657 TTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGT
*
37233722 AAAGCCGAATGGCTAATGTGAAATATGTATGAG
64 AAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
37233755 ATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATATATATATGAGATATGTATATGTGGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGT
*
37233820 AAAGCCGAATGGCTAGTGTGAAATATATATGAG
64 AAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
37233853 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
37233903 GTGTGTATAT
Statistics
Matches: 608, Mismatches: 22, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
96 146 0.24
97 10 0.02
98 452 0.74
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (96 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:37234097 original size:37 final size:37
Alignment explanation
Indices: 37234043--37234187 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
37234033 GGAAATATAT
37234043 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
37234080 TCCGGGTAAGACTCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
37234117 TCCGGGTAAGACCCGATGACTACGTGTGGAGACTT-TG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA-TTATG
* *
37234154 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
37234188 TCATCTAAGC
Statistics
Matches: 101, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
36 2 0.02
37 97 0.96
38 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:37234268 original size:106 final size:106
Alignment explanation
Indices: 37234134--37234349 Score: 423
Period size: 106 Copynumber: 2.0 Consensus size: 106
37234124 AAGACCCGAT
37234134 GACTACGTGTGGAGACTTTGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCATCTAAGCT
1 GACTACGTGTGGAGACTTTGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCATCTAAGCT
37234199 AAAGGTCTCGCCGATAATCCGAGTAGAGGTTAAAGCTATAA
66 AAAGGTCTCGCCGATAATCCGAGTAGAGGTTAAAGCTATAA
*
37234240 GACTACGTGTGGAGACTTTGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCATCTGAGCT
1 GACTACGTGTGGAGACTTTGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCATCTAAGCT
37234305 AAAGGTCTCGCCGATAATCCGAGTAGAGGTTAAAGCTATAA
66 AAAGGTCTCGCCGATAATCCGAGTAGAGGTTAAAGCTATAA
37234346 GACT
1 GACT
37234350 TTGTAATAAG
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 109 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (106 bp):
GACTACGTGTGGAGACTTTGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCATCTAAGCT
AAAGGTCTCGCCGATAATCCGAGTAGAGGTTAAAGCTATAA
Found at i:37236650 original size:40 final size:40
Alignment explanation
Indices: 37236627--37236808 Score: 249
Period size: 40 Copynumber: 4.5 Consensus size: 40
37236617 TACTTGCTCG
*
37236627 AATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACA
* *
37236667 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACA
*
37236707 AATGCCTTCAGGACATAGCCCGGATATAGTAGCTCGCACA
1 AATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACA
* * * * *
37236747 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA
1 AATGCCTTCAGGACATAGCCCGGATA-TAGTAACTCGCACA
* *
37236787 AATGCCTTCGGGACTTAGCCCG
1 AATGCCTTCAGGACATAGCCCG
37236809 ATTATCATCG
Statistics
Matches: 129, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
39 1 0.01
40 128 0.99
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (40 bp):
AATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACA
Found at i:37236724 original size:80 final size:79
Alignment explanation
Indices: 37236592--37236808 Score: 285
Period size: 80 Copynumber: 2.7 Consensus size: 79
37236582 AAGCCAAGTA
* * * * *
37236592 CCTTCGGGA-TTTGACCGGATATAGCTACTTGCTCGAATGCCTTCAGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTAGCACAAATGCCTTCAGGACATAGCCCGGATATAG
*
37236656 TAACTCGCACCAATG
65 TAACTCGCACAAATG
*
37236671 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCAGGACATAGCCCGGATATAG
*
37236736 TAGCTCGCACAAATG
65 TAACTCGCACAAATG
* * *
37236751 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTAGCACAAATGCCTTCAGGACATAGCCCG
37236809 ATTATCATCG
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
79 11 0.09
80 112 0.91
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTAGCACAAATGCCTTCAGGACATAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:37238126 original size:52 final size:52
Alignment explanation
Indices: 37238052--37238168 Score: 218
Period size: 52 Copynumber: 2.3 Consensus size: 52
37238042 CTCAAAGCTC
*
37238052 TTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTT
1 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTT
37238104 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTT
1 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTT
37238156 TTTTTTCTT-TTTT
1 TTTTTTCTTCTTTT
37238169 CATCATCATT
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
51 4 0.06
52 60 0.94
ACGTcount: A:0.17, C:0.21, G:0.10, T:0.52
Consensus pattern (52 bp):
TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTT
Found at i:37249723 original size:37 final size:37
Alignment explanation
Indices: 37249667--37249769 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
37249657 CGAATAGTCC
* *
37249667 CCACACGTAGTTATTGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
37249704 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
37249741 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
37249770 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:37249968 original size:48 final size:48
Alignment explanation
Indices: 37249910--37250283 Score: 676
Period size: 48 Copynumber: 7.8 Consensus size: 48
37249900 ATATACACAC
*
37249910 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
37249958 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
37250006 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
37250054 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
37250102 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
37250150 ATCTCATTCATATTCCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
37250198 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
37250246 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
37250284 TATTTCACAC
Statistics
Matches: 313, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 313 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:37250288 original size:28 final size:28
Alignment explanation
Indices: 37250256--37250311 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
37250246 ATCTCATACA
*
37250256 TATTTCACACTAGCCATTCGGCTTTACC
1 TATTTCACACTAGCCATTCGGATTTACC
37250284 TATTTCACACTAGCCATTCGGATTTACC
1 TATTTCACACTAGCCATTCGGATTTACC
37250312 ACATATACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.23, C:0.30, G:0.11, T:0.36
Consensus pattern (28 bp):
TATTTCACACTAGCCATTCGGATTTACC
Found at i:37250369 original size:119 final size:123
Alignment explanation
Indices: 37250160--37250402 Score: 406
Period size: 119 Copynumber: 2.0 Consensus size: 123
37250150 ATCTCATTCA
37250160 TATTCCACACTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
1 TATTCCACACTAGCCATTCGACTTTACCACATATACATA-CTCATACATATTTCACACTAGCCAT
*
37250225 TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
65 TCAGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
*
37250284 TATTTCACACTAGCCATTCGGA-TTTACCACATATACATA-TC-T-CATA-TTCACACTAGCCAT
1 TATTCCACACTAGCCATTC-GACTTTACCACATATACATACTCATACATATTTCACACTAGCCAT
*
37250344 TCAGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTTTACC
65 TCAGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
37250403 ACATATACAT
Statistics
Matches: 115, Mismatches: 3, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
119 71 0.62
120 4 0.03
121 1 0.01
122 2 0.02
124 35 0.30
125 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.34
Consensus pattern (123 bp):
TATTCCACACTAGCCATTCGACTTTACCACATATACATACTCATACATATTTCACACTAGCCATT
CAGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
Found at i:37250393 original size:167 final size:170
Alignment explanation
Indices: 37250112--37250450 Score: 605
Period size: 167 Copynumber: 2.0 Consensus size: 170
37250102 ATCTCATACA
*
37250112 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTCCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGATTTACCACATATACATA-CTCA-TCATATTCCACACTAGCCAT
37250177 TCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
64 TCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
37250242 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
129 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
37250284 TATTTCACACTAGCCATTCGGATTTACCACATATACATA-TC-TCATATT-CACACTAGCCATTC
1 TATTTCACACTAGCCATTCGGATTTACCACATATACATACTCATCATATTCCACACTAGCCATTC
*
37250346 -AGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATA
66 GA-CTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
37250410 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
130 CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
37250451 ACATATACAT
Statistics
Matches: 164, Mismatches: 2, Indels: 7
0.95 0.01 0.04
Matches are distributed among these distances:
166 1 0.01
167 116 0.71
168 7 0.04
170 2 0.01
172 38 0.23
ACGTcount: A:0.30, C:0.30, G:0.06, T:0.34
Consensus pattern (170 bp):
TATTTCACACTAGCCATTCGGATTTACCACATATACATACTCATCATATTCCACACTAGCCATTC
GACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAC
ATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
Found at i:37250401 original size:48 final size:48
Alignment explanation
Indices: 37250284--37250501 Score: 331
Period size: 48 Copynumber: 4.6 Consensus size: 48
37250274 CGGCTTTACC
*
37250284 TATTTCACACTAGCCATTCGGATTTACCACATATACATA--TC--TCA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCA
*
37250328 TA-TTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATTCA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCA
*
37250375 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCA
37250423 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT-A
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT-TCA
* * *
37250471 TATTTCACATTATCCATTTGGCTTTACCACA
1 TATTTCACACTAGCCATTCGGCTTTACCACA
37250502 CACATATATA
Statistics
Matches: 160, Mismatches: 8, Indels: 8
0.91 0.05 0.05
Matches are distributed among these distances:
43 34 0.21
44 2 0.01
45 2 0.01
47 5 0.03
48 117 0.73
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCA
Found at i:37250440 original size:215 final size:219
Alignment explanation
Indices: 37250064--37250498 Score: 745
Period size: 215 Copynumber: 2.0 Consensus size: 219
37250054 ATCTCATACA
*
37250064 TATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGACTTTACCACATATACATA-CTCATACATATTTCACACTAGCCAT
*
37250129 TCGGCTTTACCACATATACATATCTCATTCATATTCCACACTAGCCATTCGACTTTACCACATAT
65 TCAGCTTTACCACATATACATATCTCATTCATATTCCACACTAGCCATTCGACTTTACCACATAT
37250194 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
130 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
37250259 TTCACACTAGCCATTCGGCTTTACC
195 TTCACACTAGCCATTCGGCTTTACC
37250284 TATTTCACACTAGCCATTCGGA-TTTACCACATATACATA-TC-T-CATA-TTCACACTAGCCAT
1 TATTTCACACTAGCCATTC-GACTTTACCACATATACATACTCATACATATTTCACACTAGCCAT
* *
37250344 TCAGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATAT
65 TCAGCTTTACCACATATACATATCTCATTCATATTCCACACTAGCCATTCGACTTTACCACATAT
*
37250409 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
130 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* * *
37250474 TTCACATTATCCATTTGGCTTTACC
195 TTCACACTAGCCATTCGGCTTTACC
37250499 ACACACATAT
Statistics
Matches: 206, Mismatches: 8, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
215 162 0.79
216 4 0.02
217 1 0.00
218 2 0.01
220 35 0.17
221 2 0.01
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.35
Consensus pattern (219 bp):
TATTTCACACTAGCCATTCGACTTTACCACATATACATACTCATACATATTTCACACTAGCCATT
CAGCTTTACCACATATACATATCTCATTCATATTCCACACTAGCCATTCGACTTTACCACATATA
CATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
TCACACTAGCCATTCGGCTTTACC
Done.