Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 116 of 352
Found at i:37255013 original size:54 final size:54
Alignment explanation
Indices: 37254949--37255409 Score: 428
Period size: 55 Copynumber: 8.6 Consensus size: 54
37254939 TTGGTAAGAT
* * * *
37254949 AAGGATATCATGTAAAACCATGCCAAGGCATGGTATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * ** *
37255003 AAGGAAATCATGTAAGACCATGTCAAGATATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGG-C
* * *
37255059 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGAC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
*** **
37255111 AAGGATACCATGTAAGACCATG-TTTGGAACATGGCATT--TG-G-----TAAGAT
1 AAGGATACCATGTAAGACCATGCCAAGG--CATGGCATTGATGAGTTCTATAAGGC
* * *
37255158 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * *
37255212 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
** * *
37255267 AAAGG-CCCCATGTAAGACCATGCCAAGGCATGACCTTGATGAGTTACTATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
* * * *
37255322 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-CCCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * *
37255375 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCA
37255410 ATGGTAAGTT
Statistics
Matches: 339, Mismatches: 51, Indels: 35
0.80 0.12 0.08
Matches are distributed among these distances:
46 9 0.03
47 26 0.08
48 3 0.01
49 1 0.00
51 1 0.00
52 12 0.04
53 55 0.16
54 93 0.27
55 131 0.39
56 8 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:37255216 original size:209 final size:211
Alignment explanation
Indices: 37254896--37255343 Score: 767
Period size: 209 Copynumber: 2.1 Consensus size: 211
37254886 GCATTGGCAC
37254896 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
*
37254961 TAAAACCATGCCAAGGCATGGTATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
66 TAAAACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
* * *
37255026 CAAGATATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATGG
131 CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGCCCCATGTAAGACCATGCCAAGGCATGA
*
37255091 CATTGGTGAGTT-C-A
196 CATTGATGAGTTACTA
37255105 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
* *
37255170 TAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGCAAGGAAATCATGTAAGACCATGT
66 TAAAACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
*
37255235 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGCCCCATGTAAGACCATGCCAAGGCATGA
131 CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGCCCCATGTAAGACCATGCCAAGGCATGA
*
37255300 CCTTGATGAGTTACTA
196 CATTGATGAGTTACTA
* *
37255316 TAAGGCAAAGG-TCCCATGTAAGACCATG
1 TAAGAC-AAGGATACCATGTAAGACCATG
37255344 CCAAGGCATG
Statistics
Matches: 225, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
209 198 0.88
210 1 0.00
211 22 0.10
212 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (211 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
TAAAACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGCCCCATGTAAGACCATGCCAAGGCATGA
CATTGATGAGTTACTA
Found at i:37255243 original size:100 final size:100
Alignment explanation
Indices: 37255066--37255248 Score: 269
Period size: 100 Copynumber: 1.8 Consensus size: 100
37255056 GAAAAGGTCC
* * *
37255066 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGACAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCATAAGACAAGGAAACCATGTAAGACCA
***
37255131 TGTTTGGAACATGGCATTTGGTAAGATAAGGATAT
66 TGTCAAGAACATGGCATTTGGTAAGATAAGGATAT
* * *
37255166 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAG-TTCATAAGACAAGGAAACCATGTAAGACC
37255231 ATGTCAAG-ACATGGCATT
65 ATGTCAAGAACATGGCATT
37255249 GATGAGTTAC
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 43 0.59
101 30 0.41
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.25
Consensus pattern (100 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCATAAGACAAGGAAACCATGTAAGACCA
TGTCAAGAACATGGCATTTGGTAAGATAAGGATAT
Found at i:37263813 original size:16 final size:17
Alignment explanation
Indices: 37263782--37263814 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37263772 TTCATAAGTA
37263782 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
37263799 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
37263815 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:37264160 original size:46 final size:46
Alignment explanation
Indices: 37264095--37264372 Score: 378
Period size: 46 Copynumber: 6.0 Consensus size: 46
37264085 TTATCTTTGA
* * * * * *
37264095 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATAT
*
37264141 CATGTTGCCATGGTATCTTTCAACCATGGTATTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
* * ***
37264187 CACGTTTCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
37264233 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
**
37264279 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
* ***
37264325 CAAGTTGCCATGGTATCTTTCAACCATGGTCTTGCACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
37264371 CA
1 CA
37264373 GAGAGCACAC
Statistics
Matches: 209, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 205 0.98
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
Found at i:37267336 original size:27 final size:27
Alignment explanation
Indices: 37267290--37267381 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
37267280 ATTACCAAAG
* * * * *
37267290 TACCCTAGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
37267317 TATCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
37267344 TACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGA-TTTACAAAATTACCATTT
37267371 TACCCTCGATT
1 TACCCTCGATT
37267382 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:37267403 original size:27 final size:26
Alignment explanation
Indices: 37267373--37267563 Score: 129
Period size: 27 Copynumber: 7.1 Consensus size: 26
37267363 TACCATTTTA
* **
37267373 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
37267400 CCCTG-TAGGATAGAATTACCAAAATAC
1 CCCTGAT-TG-TAAAATTACCAAAATAC
*
37267427 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* * *
37267454 CCCTAGTTTGTAAAATTATCGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* * * *
37267481 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCT-GATTGTAAAATTACCAAAATAC
*
37267507 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-GA-TTGTAAAATTACCAAAATAC
37267535 CCCTGATT-TACAAAATTA-CAGAAATAC
1 CCCTGATTGT--AAAATTACCA-AAATAC
37267562 CC
1 CC
37267564 TTTGACTTTC
Statistics
Matches: 135, Mismatches: 20, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
25 2 0.01
26 9 0.07
27 117 0.87
28 6 0.04
29 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (26 bp):
CCCTGATTGTAAAATTACCAAAATAC
Found at i:37267454 original size:54 final size:54
Alignment explanation
Indices: 37267380--37267535 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 54
37267370 TTACCCTCGA
* * *
37267380 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGT
* * ** * * *
37267434 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
* **
37267488 TTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCGAAATACCCCT-AGTAGGTAAAATTACCAAAATACC
37267536 CCTGATTTAC
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 4 0.05
54 78 0.92
55 3 0.04
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:37267550 original size:81 final size:81
Alignment explanation
Indices: 37267413--37267562 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 81
37267403 TGTAGGATAG
* **
37267413 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATC-GAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTA-CAGAA
37267477 ATACCACTGGTTTGTGA
65 ATACCACTGGTTTGTGA
*
37267494 AATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAATTACAGA
1 AATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTAG-TTTACAAAATTACAGA
37267557 AATACC
64 AATACC
37267563 CTTTGACTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
80 6 0.10
81 56 0.90
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:37267551 original size:54 final size:55
Alignment explanation
Indices: 37267413--37267564 Score: 184
Period size: 54 Copynumber: 2.8 Consensus size: 55
37267403 TGTAGGATAG
* *
37267413 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAAAATTACCGAAATACCCTCTAATTTGTAA
* * * * *
37267467 AATTATCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTC-AATTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTCTAATTTGTAA
** *
37267521 AATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCT
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCT
37267565 TTGACTTTCT
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 80 0.99
55 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.29
Consensus pattern (55 bp):
AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTCTAATTTGTAA
Found at i:37267615 original size:27 final size:27
Alignment explanation
Indices: 37267541--37267627 Score: 79
Period size: 27 Copynumber: 3.1 Consensus size: 27
37267531 ATACCCCTGA
* *
37267541 TTTACAAAATTACAGAAATACCCTTTGAC
1 TTTACAAAATTACTGAAATA-CCTTTG-G
37267570 TTT-CTAAAAATTA-TAGAAATACCTTTGG
1 TTTAC--AAAATTACT-GAAATACCTTTGG
* *
37267598 TTTACAAAATTACTGAAAAACCCTTGG
1 TTTACAAAATTACTGAAATACCTTTGG
37267625 TTT
1 TTT
37267628 GTAGATTTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
27 21 0.43
28 5 0.10
29 10 0.20
30 13 0.27
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCTTTGG
Found at i:37268813 original size:25 final size:27
Alignment explanation
Indices: 37268772--37268824 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
37268762 AGTCAAACAT
37268772 GCATTTAGGTCAATTTAAC-CCTAGGG
1 GCATTTAGGTCAATTTAACTCCTAGGG
* *
37268798 GCATTTCGGT-AATTTATCTCCTAGGG
1 GCATTTAGGTCAATTTAACTCCTAGGG
37268824 G
1 G
37268825 TAAAACTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (27 bp):
GCATTTAGGTCAATTTAACTCCTAGGG
Found at i:37270348 original size:26 final size:26
Alignment explanation
Indices: 37270313--37270420 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
37270303 TGAAATGCCC
*
37270313 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
37270339 GTCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
37270365 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
37270391 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
37270417 ATCA
1 ATCA
37270421 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:37271687 original size:25 final size:24
Alignment explanation
Indices: 37271649--37271713 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 24
37271639 AGGAAGTGCT
*
37271649 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
37271673 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
37271698 AGAAAGGGCTTTGCCC
1 A-AAAGGGCTTTGCCC
37271714 TAGATATTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:37271925 original size:42 final size:42
Alignment explanation
Indices: 37271866--37271957 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
37271856 TAGTCTCCCC
*
37271866 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
37271908 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
37271950 AAATGGGC
1 AAATGGGC
37271958 CTAAGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:37274307 original size:24 final size:25
Alignment explanation
Indices: 37274261--37274307 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
37274251 TAGTCCTCTC
* * *
37274261 GAGCTTTCCGTTATATGGTTCTTGT
1 GAGCTTCCCGTTATATAGCTCTTGT
37274286 GAGCTTCCCGTTA-ATAGCTCTT
1 GAGCTTCCCGTTATATAGCTCTT
37274308 CGGCGCATCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 7 0.37
25 12 0.63
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.43
Consensus pattern (25 bp):
GAGCTTCCCGTTATATAGCTCTTGT
Found at i:37274439 original size:129 final size:129
Alignment explanation
Indices: 37274209--37274445 Score: 411
Period size: 129 Copynumber: 1.8 Consensus size: 129
37274199 TGGTCCTGCA
*
37274209 TATGTTGCGGACACACCATAGCTCGAAAGAGTATCCCGTTATTAGTCCTCTCGAGCTTTCCGTTA
1 TATGTTGCGGACACACCATAGCTCGAAAGAGTATCCCGTTATTAGCCCTCTCGAGCTTTCCGTTA
* *
37274274 TATGGTTCTTGTGAGCTTCCCGTTAATAGCTCTTCGGCGCATCCCGATCGGTCGTGATCCTACT
66 TATGGTTCTTGTGAGCTTCCCATTAATAGCTCTTCGGAGCATCCCGATCGGTCGTGATCCTACT
* * *
37274338 TATGTTGCGGACACACCATAGTTTGAAAGAGTATCCCGTTATTAGCCCTCTCGAGCTTTCTGTTA
1 TATGTTGCGGACACACCATAGCTCGAAAGAGTATCCCGTTATTAGCCCTCTCGAGCTTTCCGTTA
*
37274403 TATGGTTCTTGTGAGCTTCCTATTAATAGCTCTTCGGAGCATC
66 TATGGTTCTTGTGAGCTTCCCATTAATAGCTCTTCGGAGCATC
37274446 AGTCGTGATC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
129 101 1.00
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (129 bp):
TATGTTGCGGACACACCATAGCTCGAAAGAGTATCCCGTTATTAGCCCTCTCGAGCTTTCCGTTA
TATGGTTCTTGTGAGCTTCCCATTAATAGCTCTTCGGAGCATCCCGATCGGTCGTGATCCTACT
Found at i:37274504 original size:26 final size:26
Alignment explanation
Indices: 37274475--37274524 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
37274465 CCGTTTTATA
*
37274475 GCTCTTCGTGAGCTTCCCGATTAAAG
1 GCTCTTCGAGAGCTTCCCGATTAAAG
* *
37274501 GCTCTTTGAGAGCTTCCTGATTAA
1 GCTCTTCGAGAGCTTCCCGATTAA
37274525 TGACTCTCTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (26 bp):
GCTCTTCGAGAGCTTCCCGATTAAAG
Found at i:37274531 original size:26 final size:25
Alignment explanation
Indices: 37274484--37274546 Score: 72
Period size: 26 Copynumber: 2.5 Consensus size: 25
37274474 AGCTCTTCGT
* * *
37274484 GAGCTTCCCGATTAAAGGCTCTTTG
1 GAGCTTCCTGATTAAAGACTCTCTG
*
37274509 AGAGCTTCCTGATTAATGACTCTCTG
1 -GAGCTTCCTGATTAAAGACTCTCTG
*
37274535 GAGCTACCTGAT
1 GAGCTTCCTGAT
37274547 ATGGCTCTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 11 0.34
26 21 0.66
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (25 bp):
GAGCTTCCTGATTAAAGACTCTCTG
Found at i:37275566 original size:13 final size:13
Alignment explanation
Indices: 37275542--37275567 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37275532 GCGTGTGTCT
37275542 TAGCCGTGTGTGA
1 TAGCCGTGTGTGA
37275555 TAGCCGTGTGTGA
1 TAGCCGTGTGTGA
37275568 CACATGGCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.38, T:0.31
Consensus pattern (13 bp):
TAGCCGTGTGTGA
Found at i:37278613 original size:24 final size:24
Alignment explanation
Indices: 37278582--37278630 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
37278572 CAAGTGAGAA
*
37278582 TATTATAAGGATCTAACAGTTAGT
1 TATTATAAGGATATAACAGTTAGT
37278606 TATTATAAGGATATAACAGTTAGT
1 TATTATAAGGATATAACAGTTAGT
37278630 T
1 T
37278631 TTGGTTCAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (24 bp):
TATTATAAGGATATAACAGTTAGT
Found at i:37280599 original size:16 final size:16
Alignment explanation
Indices: 37280578--37280629 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
37280568 TTTGGTTCGC
37280578 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
37280594 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
37280610 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
37280626 TGTA
1 TGTA
37280630 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:37280676 original size:45 final size:44
Alignment explanation
Indices: 37280610--37280704 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 44
37280600 GGATTAGAGG
*
37280610 TGTAATGGAATAGAGGTGTAATAGCAAATCAAT-TGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAA--AATGTGTTTGGTTGAA
* *
37280655 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAATGTGTTTGGTTGAA
37280699 TGTAAT
1 TGTAAT
37280705 AGAGGTGTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 2 0.04
44 18 0.39
45 26 0.57
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAAATGTGTTTGGTTGAA
Found at i:37280874 original size:25 final size:25
Alignment explanation
Indices: 37280842--37280896 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
37280832 TAATTTAATC
*
37280842 ATAT-TTAAACATAATTATTATT-AA
1 ATATATTAAACAT-ATTATAATTAAA
*
37280866 ATATATTAAATATATTATAATTAAA
1 ATATATTAAACATATTATAATTAAA
37280891 ATATAT
1 ATATAT
37280897 AATTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATATATTAAACATATTATAATTAAA
Found at i:37281078 original size:47 final size:46
Alignment explanation
Indices: 37281027--37281187 Score: 140
Period size: 47 Copynumber: 3.6 Consensus size: 46
37281017 GATTTAATAA
37281027 AATTTAAAATAATTATAACTAATAAATTATCTTATATGAATTTGTAT
1 AATTTAAAATAATTATAA-TAATAAATTATCTTATATGAATTTGTAT
* * * * *
37281074 AATTTAAAATAATTATTATTACATATAAT-TTA-AT-AA---GATAT
1 AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTG-TAT
* * * *
37281115 AATTTCATAA-AATTATTGATAATAAATTTTCTTATATGAATTTATAT
1 AATTT-AAAATAATTA-TAATAATAAATTATCTTATATGAATTTGTAT
37281162 AATTTAAAATAATT-TATATAATAAAT
1 AATTTAAAATAATTATA-ATAATAAAT
37281188 CTATTGTATA
Statistics
Matches: 88, Mismatches: 15, Indels: 23
0.70 0.12 0.18
Matches are distributed among these distances:
40 1 0.01
41 13 0.15
42 11 0.12
43 5 0.06
44 4 0.05
45 6 0.07
46 19 0.22
47 29 0.33
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (46 bp):
AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTGTAT
Found at i:37284472 original size:29 final size:29
Alignment explanation
Indices: 37284419--37284476 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
37284409 ATATAAATGT
**
37284419 GTGCATAATAAAATTGGAGGTTATAAAAA
1 GTGCATAATAAAATTAAAGGTTATAAAAA
37284448 GTGCATAATAAAATTAAAAGG-TATAAAAA
1 GTGCATAATAAAATT-AAAGGTTATAAAAA
37284477 TGTTAAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 23 0.88
30 3 0.12
ACGTcount: A:0.53, C:0.03, G:0.17, T:0.26
Consensus pattern (29 bp):
GTGCATAATAAAATTAAAGGTTATAAAAA
Found at i:37285123 original size:18 final size:18
Alignment explanation
Indices: 37285100--37285142 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
37285090 CATGCACAGT
* *
37285100 AAAAAAATGCTGGAAACG
1 AAAAAAAAGCTGAAAACG
*
37285118 AAAAAAAAGTTGAAAACG
1 AAAAAAAAGCTGAAAACG
37285136 AAAAAAA
1 AAAAAAA
37285143 GTAAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.67, C:0.07, G:0.16, T:0.09
Consensus pattern (18 bp):
AAAAAAAAGCTGAAAACG
Found at i:37285150 original size:17 final size:18
Alignment explanation
Indices: 37285113--37285150 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
37285103 AAAATGCTGG
**
37285113 AAACGAAAAAAAAGTTGA
1 AAACGAAAAAAAAGTAAA
37285131 AAACG-AAAAAAAGTAAA
1 AAACGAAAAAAAAGTAAA
37285148 AAA
1 AAA
37285151 AAGGGTCATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.74, C:0.05, G:0.13, T:0.08
Consensus pattern (18 bp):
AAACGAAAAAAAAGTAAA
Found at i:37285331 original size:15 final size:16
Alignment explanation
Indices: 37285313--37285366 Score: 56
Period size: 17 Copynumber: 3.4 Consensus size: 16
37285303 AAAGGGAAAG
*
37285313 AAAGGAGGAGAA-GAA
1 AAAGAAGGAGAAGGAA
37285328 AAAGAAGGAGAAGGAAA
1 AAAGAAGGAGAAGG-AA
* * *
37285345 AAAGAAAGAAAAGAAA
1 AAAGAAGGAGAAGGAA
37285361 AAAGAA
1 AAAGAA
37285367 AGTATAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
15 11 0.33
16 9 0.27
17 13 0.39
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (16 bp):
AAAGAAGGAGAAGGAA
Found at i:37285335 original size:28 final size:29
Alignment explanation
Indices: 37285290--37285344 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
37285280 AGCACCAGCA
37285290 AGGAGAAGAAAATAAAGG-GAAAGAAAGG
1 AGGAGAAGAAAATAAAGGAGAAAGAAAGG
*
37285318 AGGAGAAGAAAA-AGAAGGAGAAGGAAA
1 AGGAGAAGAAAATA-AAGGAGAAAGAAA
37285345 AAAGAAAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 1 0.04
28 16 0.67
29 7 0.29
ACGTcount: A:0.62, C:0.00, G:0.36, T:0.02
Consensus pattern (29 bp):
AGGAGAAGAAAATAAAGGAGAAAGAAAGG
Found at i:37285346 original size:17 final size:17
Alignment explanation
Indices: 37285307--37285366 Score: 63
Period size: 16 Copynumber: 3.6 Consensus size: 17
37285297 GAAAATAAAG
*
37285307 GGAAAGAAAGGAGGAGAA
1 GGAAA-AAAGAAGGAGAA
37285325 -G-AAAAAGAAGGAGAA
1 GGAAAAAAGAAGGAGAA
*
37285340 GGAAAAAAGAAAGA-AA
1 GGAAAAAAGAAGGAGAA
*
37285356 AGAAAAAAGAA
1 GGAAAAAAGAA
37285367 AGTATAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
15 11 0.30
16 15 0.41
17 11 0.30
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (17 bp):
GGAAAAAAGAAGGAGAA
Found at i:37285488 original size:26 final size:26
Alignment explanation
Indices: 37285459--37285524 Score: 111
Period size: 26 Copynumber: 2.7 Consensus size: 26
37285449 TTGCTATTAG
37285459 TTATTATTATTGTTAGTAAAAAACCC
1 TTATTATTATTGTTAGTAAAAAACCC
37285485 TTATTATTATTGTTAGTAAAAAACCC
1 TTATTATTATTGTTAGTAAAAAACCC
37285511 -TA--ATTATTGTTAGT
1 TTATTATTATTGTTAGT
37285525 TATTATTATT
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
23 12 0.30
25 2 0.05
26 26 0.65
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.45
Consensus pattern (26 bp):
TTATTATTATTGTTAGTAAAAAACCC
Found at i:37290259 original size:72 final size:71
Alignment explanation
Indices: 37290142--37290278 Score: 202
Period size: 72 Copynumber: 1.9 Consensus size: 71
37290132 ATCCGCCCCC
* * **
37290142 TGACGAGCCTGGGAAATAGTCATTGCTCGGAAAATCCAGATGATAAGAAGTATCAGCCGAATGTG
1 TGACGAGCCCGGGAAATAGTCATTGCCCACAAAATCCAGATGATAAGAAGTATCAGCCGAA-GTG
37290207 AATGCGA
65 AATGCGA
* * *
37290214 TGACGAGCCCGGGAAATAGTCATTGCCCACCAAATCCGGATGATAAGAAGTATCAGTCGAAGTGA
1 TGACGAGCCCGGGAAATAGTCATTGCCCACAAAATCCAGATGATAAGAAGTATCAGCCGAAGTGA
37290279 TCGCTCGGAC
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
71 4 0.07
72 54 0.93
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (71 bp):
TGACGAGCCCGGGAAATAGTCATTGCCCACAAAATCCAGATGATAAGAAGTATCAGCCGAAGTGA
ATGCGA
Found at i:37292618 original size:150 final size:148
Alignment explanation
Indices: 37292263--37292980 Score: 1082
Period size: 149 Copynumber: 4.8 Consensus size: 148
37292253 CGTATACAAA
* * *
37292263 TTTTTTTATATTAATTTAATAAATAACCCTAATTTT-GACACTTTCTTCGTATTTTTTTATTTTC
1 TTTTTTTATATT-TTTTAATAAATAACCCTGATTTTAG-CACTTTATTCGTA-TTTTTTATTTTC
* * *
37292327 GTATCTTATTTTTTAAAATATATTATTTTCATATTTTATTTCTTTATATTATTTTAGTACATAAT
63 GTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTATATTATTTTAGTACATAAT
37292392 GTTTCAAATGTATTATTTAAG
128 GTTTCAAATGTATTATTTAAG
*
37292413 TGTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTATTTTCGT
1 TTTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTA-TTTTTTATTTTCGT
* *
37292478 ATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTATATTATTTTGGTACATAATGT
65 ATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTATATTATTTTAGTACATAATGT
*
37292543 TTCAAATGTATTATTTAGG
130 TTCAAATGTATTATTTAAG
*
37292562 TATTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTTGTATTTTTTATTTTCGT
1 T-TTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTATTTTCGT
* *
37292627 ATATTATTTTTTTAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGT
65 ATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTATATTATTTTAGTACATAATGT
37292692 TTCAAATGTATTATTTAAGTG
130 TTCAAATGTATTATTTAA--G
* *
37292713 TTTTTTTATATTTTTTTAATAAATAACCCTAATTTTAGCACTTTATTTGTATTTTTTATTTTCGT
1 TTTTTTTATA-TTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTATTTTCGT
* * * * *
37292778 ATATTATTTTTTAAAATATATTATTTTTGTATTTTA-TTTTTTATATTATTTTAGCAAAAAATGA
65 ATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTATATTATTTTAGTACATAATGT
37292842 TTCAAATGTATTATTTAAG
130 TTCAAATGTATTATTTAAG
* *
37292861 TTTTTTTATATTAATTTAATAAATAACCCTGACTTT-GCCACTTTATTCGTATTTTTTATTTTCG
1 TTTTTTTATATT-TTTTAATAAATAACCCTGATTTTAG-CACTTTATTCGTATTTTTTATTTTCG
* * * * *
37292925 GATTTTATTTTTTAAAATATACTACTTTCATATTTTATTTTTTTATATTATTTTAG
64 TATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTATATTATTTTAG
37292981 CAAAAAACTC
Statistics
Matches: 527, Mismatches: 33, Indels: 17
0.91 0.06 0.03
Matches are distributed among these distances:
147 3 0.01
148 87 0.17
149 239 0.45
150 109 0.21
151 89 0.17
ACGTcount: A:0.28, C:0.08, G:0.06, T:0.58
Consensus pattern (148 bp):
TTTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTATTTTCGTA
TATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTATATTATTTTAGTACATAATGTT
TCAAATGTATTATTTAAG
Found at i:37292826 original size:12 final size:13
Alignment explanation
Indices: 37292794--37292829 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
37292784 TTTTTTAAAA
37292794 TATATTATTTTTG
1 TATATTATTTTTG
*
37292807 TATTTTATTTTT-
1 TATATTATTTTTG
37292819 TATATTATTTT
1 TATATTATTTT
37292830 AGCAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (13 bp):
TATATTATTTTTG
Found at i:37292936 original size:299 final size:297
Alignment explanation
Indices: 37292263--37292980 Score: 1136
Period size: 299 Copynumber: 2.4 Consensus size: 297
37292253 CGTATACAAA
* *
37292263 TTTTTTTATATTAATTTAATAAATAACCCTAATTTTGACACTTTCTTCGTATTTTTTTATTTTCG
1 TTTTTTTATATTAATTTAATAAATAACCCTGATTTTG-CACTTTATTCGTA-TTTTTTATTTTCG
*
37292328 TATCTTATTTTTTAAAATATATTATTTTCATATTTTATTTCTTTATATTATTTTAGTACATAATG
64 TATATTATTTTTTAAAATATATTATTTTCATATTTTATTTCTTTATATTATTTTAGTACATAATG
*
37292393 TTTCAAATGTATTATTTAAGTGTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTAT
129 TTTCAAATGTATTATTTAAGTGTTTTTATATTTTTTAATAAATAACCCTAATTTTAGCACTTTAT
*
37292458 TCGTATTTTTTTATTTTCGTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTAT
194 TCGTATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTAT
* * * * * *
37292523 ATTATTTTGGTACATAATGTTTCAAATGTATTATTTAGG
259 ATTATTTTAGCAAAAAATGATTCAAATGTATTATTTAAG
* *
37292562 TATTTTTTATATT-TTTTAATAAATAACCCTGATTTTAGCACTTTATTTGTATTTTTTATTTTCG
1 T-TTTTTTATATTAATTTAATAAATAACCCTGATTTT-GCACTTTATTCGTATTTTTTATTTTCG
* *
37292626 TATATTATTTTTTTAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATG
64 TATATTATTTTTTAAAATATATTATTTTCATATTTTATTTCTTTATATTATTTTAGTACATAATG
37292691 TTTCAAATGTATTATTTAAGTGTTTTTTTATATTTTTTTAATAAATAACCCTAATTTTAGCACTT
129 TTTCAAATGTATTATTTAAGTG--TTTTTATA-TTTTTTAATAAATAACCCTAATTTTAGCACTT
* *
37292756 TATTTGTA-TTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTTGTATTTTA-TTTTT
191 TATTCGTATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTT
37292819 TATATTATTTTAGCAAAAAATGATTCAAATGTATTATTTAAG
256 TATATTATTTTAGCAAAAAATGATTCAAATGTATTATTTAAG
* *
37292861 TTTTTTTATATTAATTTAATAAATAACCCTGACTTTGCCACTTTATTCGTATTTTTTATTTTCGG
1 TTTTTTTATATTAATTTAATAAATAACCCTGATTTTG-CACTTTATTCGTATTTTTTATTTTCGT
* * * *
37292926 ATTTTATTTTTTAAAATATACTACTTTCATATTTTATTTTTTTATATTATTTTAG
65 ATATTATTTTTTAAAATATATTATTTTCATATTTTATTTCTTTATATTATTTTAG
37292981 CAAAAAACTC
Statistics
Matches: 385, Mismatches: 27, Indels: 14
0.90 0.06 0.03
Matches are distributed among these distances:
298 109 0.28
299 170 0.44
300 68 0.18
301 38 0.10
ACGTcount: A:0.28, C:0.08, G:0.06, T:0.58
Consensus pattern (297 bp):
TTTTTTTATATTAATTTAATAAATAACCCTGATTTTGCACTTTATTCGTATTTTTTATTTTCGTA
TATTATTTTTTAAAATATATTATTTTCATATTTTATTTCTTTATATTATTTTAGTACATAATGTT
TCAAATGTATTATTTAAGTGTTTTTATATTTTTTAATAAATAACCCTAATTTTAGCACTTTATTC
GTATTTTTTTATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTATAT
TATTTTAGCAAAAAATGATTCAAATGTATTATTTAAG
Found at i:37299590 original size:10 final size:10
Alignment explanation
Indices: 37299577--37299622 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
37299567 AAAAAATACA
37299577 AAAAATATTT
1 AAAAATATTT
*
37299587 AAAAA-AATT
1 AAAAATATTT
37299596 AAAAATCA-TT
1 AAAAAT-ATTT
*
37299606 AAAATTATTT
1 AAAAATATTT
37299616 AAAAATA
1 AAAAATA
37299623 AAAAATTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
9 9 0.30
10 20 0.67
11 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAAATATTT
Found at i:37299792 original size:19 final size:19
Alignment explanation
Indices: 37299768--37299812 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
37299758 ATAAAATAAT
37299768 ATTATTTATGATTTAAAT-G-
1 ATTATTTA--ATTTAAATAGC
37299787 ATTATTTAATTTAAATAGC
1 ATTATTTAATTTAAATAGC
37299806 ATTATTT
1 ATTATTT
37299813 TTATTATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.33
18 1 0.04
19 15 0.62
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.53
Consensus pattern (19 bp):
ATTATTTAATTTAAATAGC
Found at i:37299838 original size:40 final size:38
Alignment explanation
Indices: 37299744--37299839 Score: 88
Period size: 40 Copynumber: 2.5 Consensus size: 38
37299734 TAATTTTTTA
*
37299744 AAATAATTTAAAAAA-TAAAATAATATTATTTATGATTT
1 AAATAA-TTAAAAAATTTAAATAATATTATTTATGATTT
* *** *
37299782 AAATGATTATTTAATTTAAATAGCATTATT-TTTATTATTT
1 AAATAATTAAAAAATTTAAATA--A-TATTATTTATGATTT
37299822 AAATAATTAAAAAATTTA
1 AAATAATTAAAAAATTTA
37299840 TCTAAATTTA
Statistics
Matches: 44, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
37 5 0.11
38 11 0.25
40 24 0.55
41 4 0.09
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (38 bp):
AAATAATTAAAAAATTTAAATAATATTATTTATGATTT
Found at i:37300105 original size:21 final size:17
Alignment explanation
Indices: 37300074--37300120 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 17
37300064 ATTTTTTGTA
37300074 ATTTTTTAATTTTAAAAT
1 ATTTTTTAATTTT-AAAT
37300092 GATTTTTTGCAATTTTAAAT
1 -ATTTTTT--AATTTTAAAT
37300112 ATTTTTTAA
1 ATTTTTTAA
37300121 GGTTTTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.08
19 14 0.54
20 4 0.15
21 6 0.23
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (17 bp):
ATTTTTTAATTTTAAAT
Found at i:37300421 original size:16 final size:17
Alignment explanation
Indices: 37300402--37300436 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
37300392 TTTTAATGCA
37300402 TTTTTGTT-TTGATAAT
1 TTTTTGTTGTTGATAAT
*
37300418 TTTTTGTTGTTGTTAAT
1 TTTTTGTTGTTGATAAT
37300435 TT
1 TT
37300437 AGTTGCACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (17 bp):
TTTTTGTTGTTGATAAT
Found at i:37308641 original size:93 final size:93
Alignment explanation
Indices: 37308533--37308703 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
37308523 GCCCCTAAGT
* * *
37308533 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37308598 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
37308626 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37308691 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37308704 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:37308700 original size:46 final size:46
Alignment explanation
Indices: 37308528--37308700 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
37308518 AACCCGCCCC
* * *
37308528 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
37308574 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
37308622 TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
37308667 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37308701 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:37309157 original size:30 final size:30
Alignment explanation
Indices: 37309123--37309182 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37309113 ATTTAATACG
37309123 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
37309153 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
37309183 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:37312255 original size:732 final size:732
Alignment explanation
Indices: 37310110--37313038 Score: 5754
Period size: 732 Copynumber: 4.0 Consensus size: 732
37310100 AGGACACGGC
37310110 ATAGGGACATGGGCGTGTGTCTAGGGCGTGTGAAGTCTGCACCTATTTTATGAAAAATTTTAAAA
1 ATAGGGACATGGGCGTGTGTCTAGGGCGTGTGAAGTCTGCACCTATTTTATGAAAAATTTTAAAA
37310175 ATTAAATTCGCCACACAGCCCAGCACACGGGTGTGTGACACGCCCGTGTGACTTTCCTTGGTGCA
66 ATTAAATTCGCCACACAGCCCAGCACACGGGTGTGTGACACGCCCGTGTGACTTTCCTTGGTGCA
37310240 TGACGTCATAAACAGAGAGTTACACAGGTTAAGACACGGGTGTGTTTGACCATACGGCCTACCCA
131 TGACGTCATAAACAGAGAGTTACACAGGTTAAGACACGGGTGTGTTTGACCATACGGCCTACCCA
*
37310305 CACGGGCATGTCTCAAGCCACACAAGCGTGTGACCCTATTTTGATGAAAAATTTTCTAAGTGTTG
196 CACGGGCATGTCTCAAGCCACACAAGCGTGTGACCCTGTTTTGATGAAAAATTTTCTAAGTGTTG
37310370 AAGAATTTTCTAAAGTTCTCGGTTTAGTCCTAAACTTTCTCCAATGTATGTTTTGAACCTCGTAG
261 AAGAATTTTCTAAAGTTCTCGGTTTAGTCCTAAACTTTCTCCAATGTATGTTTTGAACCTCGTAG
37310435 GCTCGATTTAGGGGATATATGATTGGTTGTTGAAAATTTTTAATTTGATGCCAAATTTATGGCTT
326 GCTCGATTTAGGGGATATATGATTGGTTGTTGAAAATTTTTAATTTGATGCCAAATTTATGGCTT
*
37310500 GGAAACGTATGTTTTCTTGTGTTTAAGTTCGGTAATTCCTCGTACCCTGTTCCGGCATCGAATAT
391 GGAAACGTATGTTTTCTTGTGTTTAAGTTCAGTAATTCCTCGTACCCTGTTCCGGCATCGAATAT
37310565 GGATAAGGGGTGTTACATTCGTTATTTTAGGTTATTCACTCCAATGCATCTCCCACCATGGCTCA
456 GGATAAGGGGTGTTACATTCGTTATTTTAGGTTATTCACTCCAATGCATCTCCCACCATGGCTCA
*
37310630 ATTTTTTTAAGGAAAGTGAGAAAGGGAAAATGACTTAATGATGTTTGGTTTTTGTTTTTAGACGA
521 GTTTTTTTAAGGAAAGTGAGAAAGGGAAAATGACTTAATGATGTTTGGTTTTTGTTTTTAGACGA
37310695 GGATATGTTGCACCATCACAAGGAGTAGCGTCGAAAGGAGTAAAGGAAGCAGCAGCAAGAACGTT
586 GGATATGTTGCACCATCACAAGGAGTAGCGTCGAAAGGAGTAAAGGAAGCAGCAGCAAGAACGTT
37310760 GTTGTGTTGAAGGAATACATGACAACAACAACAACAAACAAAGACAAAGTTAACTGGGTTTTGGA
651 GTTGTGTTGAAGGAATACATGACAACAACAACAACAAACAAAGACAAAGTTAACTGGGTTTTGGA
37310825 TCTAGTTTCCAAATTCT
716 TCTAGTTTCCAAATTCT
37310842 ATAGGGACATGGGCGTGTGTCTAGGGCGTGTGAAGTCTGCACCTATTTTATGAAAAATTTTAAAA
1 ATAGGGACATGGGCGTGTGTCTAGGGCGTGTGAAGTCTGCACCTATTTTATGAAAAATTTTAAAA
37310907 ATTAAATTCGCCACACAGCCCAGCACACGGGTGTGTGACACGCCCGTGTGACTTTCCTTGGTGCA
66 ATTAAATTCGCCACACAGCCCAGCACACGGGTGTGTGACACGCCCGTGTGACTTTCCTTGGTGCA
*
37310972 TGACGTCATAAACAGAGAGTTACACAGGTTAAGACACGGGTGTGTTTGACCATACGGTCTACCCA
131 TGACGTCATAAACAGAGAGTTACACAGGTTAAGACACGGGTGTGTTTGACCATACGGCCTACCCA
37311037 CACGGGCATGTCTCAAGCCACACAAGCGTGTGACCCTG-TTTGATGAAAAATTTTCTAAGTGTTG
196 CACGGGCATGTCTCAAGCCACACAAGCGTGTGACCCTGTTTTGATGAAAAATTTTCTAAGTGTTG
*
37311101 AAGAATTTTCTAAAGTTCTCGGTTTAGTCCTAAACTTTCTCCAATGTATGTTTTGAACATCGTAG
261 AAGAATTTTCTAAAGTTCTCGGTTTAGTCCTAAACTTTCTCCAATGTATGTTTTGAACCTCGTAG
37311166 GCTCGATTTAGGGGATATATGATTGGTTGTTGAAAATTTTTAATTTGATGCCAAATTTATGGCTT
326 GCTCGATTTAGGGGATATATGATTGGTTGTTGAAAATTTTTAATTTGATGCCAAATTTATGGCTT
37311231 GGAAACGTATGTTTTCTTGTGTTTAAGTTCAGTAATTCCTCGTACCCTGTTCCGGCATCGAATAT
391 GGAAACGTATGTTTTCTTGTGTTTAAGTTCAGTAATTCCTCGTACCCTGTTCCGGCATCGAATAT
37311296 GGATAAGGGGTGTTACATTCGTTATTTTAGGTTATTCACTCCAATGCATCTCCCACCATGGCTCA
456 GGATAAGGGGTGTTACATTCGTTATTTTAGGTTATTCACTCCAATGCATCTCCCACCATGGCTCA
37311361 GTTTTTTTAAGGAAAGTGAGAAAGGGAAAATGACTTAATGATGTTTGGTTTTTGTTTTTAGACGA
521 GTTTTTTTAAGGAAAGTGAGAAAGGGAAAATGACTTAATGATGTTTGGTTTTTGTTTTTAGACGA
37311426 GGATATGTTGCACCATCACAAGGAGTAGCGTCGAAAGGAGTAAAGGAAGCAGCAGCAAGAACGTT
586 GGATATGTTGCACCATCACAAGGAGTAGCGTCGAAAGGAGTAAAGGAAGCAGCAGCAAGAACGTT
37311491 GTTGTGTTGAAGGAATACATGACAACAACAACAACAAACAAAGACAAAGTTAACTGGGTTTTGGA
651 GTTGTGTTGAAGGAATACATGACAACAACAACAACAAACAAAGACAAAGTTAACTGGGTTTTGGA
37311556 TCTAGTTTCCAAATTCT
716 TCTAGTTTCCAAATTCT
37311573 ATAGGGACATGGGCGTGTGTCTAGGGCGTGTGAAGTCTGCACCTATTTTATGAAAAATTTTAAAA
1 ATAGGGACATGGGCGTGTGTCTAGGGCGTGTGAAGTCTGCACCTATTTTATGAAAAATTTTAAAA
37311638 ATTAAATTCGCCACACAGCCCAGCACACGGGTGTGTGACACGCCCGTGTGACTTTCCTTGGTGCA
66 ATTAAATTCGCCACACAGCCCAGCACACGGGTGTGTGACACGCCCGTGTGACTTTCCTTGGTGCA
37311703 TGACGTCATAAACAGAGAGTTACACAGGTTAAGACACGGGTGTGTTTGACCATACGGCCTACCCA
131 TGACGTCATAAACAGAGAGTTACACAGGTTAAGACACGGGTGTGTTTGACCATACGGCCTACCCA
37311768 CACGGGCATGTCTCAAGCCACACAAGCGTGTGACCCTGTTTTGATGAAAAATTTTCTAAGTGTTG
196 CACGGGCATGTCTCAAGCCACACAAGCGTGTGACCCTGTTTTGATGAAAAATTTTCTAAGTGTTG
*
37311833 AAGAATTTTCTAAAGTTCTCGGTTTAGTCCTAAACTTTCTCCAATGTATATTTTGAACCTCGTAG
261 AAGAATTTTCTAAAGTTCTCGGTTTAGTCCTAAACTTTCTCCAATGTATGTTTTGAACCTCGTAG
37311898 GCTCGATTTAGGGGATATATGATTGGTTGTTGAAAATTTTTAATTTGATGCCAAATTTATGGCTT
326 GCTCGATTTAGGGGATATATGATTGGTTGTTGAAAATTTTTAATTTGATGCCAAATTTATGGCTT
37311963 GGAAACGTATGTTTTCTTGTGTTTAAGTTCAGTAATTCCTCGTACCCTGTTCCGGCATCGAATAT
391 GGAAACGTATGTTTTCTTGTGTTTAAGTTCAGTAATTCCTCGTACCCTGTTCCGGCATCGAATAT
37312028 GGATAAGGGGTGTTACATTCGTTATTTTAGGTTATTCACTCCAATGCATCTCCCACCATGGCTCA
456 GGATAAGGGGTGTTACATTCGTTATTTTAGGTTATTCACTCCAATGCATCTCCCACCATGGCTCA
*
37312093 GTTTTTTTAAGGAAAGTGAGAAAGGGAAAATGATTTAATGATGTTTGGTTTTTGTTTTTAGACGA
521 GTTTTTTTAAGGAAAGTGAGAAAGGGAAAATGACTTAATGATGTTTGGTTTTTGTTTTTAGACGA
37312158 GGATATGTTGCACCATCACAAGGAGTAGCGTCGAAAGGAGTAAAGGAAGCAGCAGCAAGAACGTT
586 GGATATGTTGCACCATCACAAGGAGTAGCGTCGAAAGGAGTAAAGGAAGCAGCAGCAAGAACGTT
37312223 GTTGTGTTGAAGGAATACATGACAACAACAACAACAAACAAAGACAAAGTTAACTGGGTTTTGGA
651 GTTGTGTTGAAGGAATACATGACAACAACAACAACAAACAAAGACAAAGTTAACTGGGTTTTGGA
37312288 TCTAGTTTCCAAATTCT
716 TCTAGTTTCCAAATTCT
37312305 ATAGGGACATGGGCGTGTGTCTAGGGCGTGTGAAGTCTGCACCTATTTTATGAAAAATTTTAAAA
1 ATAGGGACATGGGCGTGTGTCTAGGGCGTGTGAAGTCTGCACCTATTTTATGAAAAATTTTAAAA
37312370 ATTAAATTCGCCACACAGCCCAGCACACGGGTGTGTGACACGCCCGTGTGACTTTCCTTGGTGCA
66 ATTAAATTCGCCACACAGCCCAGCACACGGGTGTGTGACACGCCCGTGTGACTTTCCTTGGTGCA
*
37312435 TGACGTCATAAACAGAGAGTTACACAAGTTAAGACACGGGTGTGTTTGACCATACGGCCTACCCA
131 TGACGTCATAAACAGAGAGTTACACAGGTTAAGACACGGGTGTGTTTGACCATACGGCCTACCCA
37312500 CACGGGCATGTCTCAAGCCACACAAGCGTGTGACCCTGTTTTGATGAAAAATTTTCTAAGTGTTG
196 CACGGGCATGTCTCAAGCCACACAAGCGTGTGACCCTGTTTTGATGAAAAATTTTCTAAGTGTTG
37312565 AAGAATTTTCTAAAGTTCTCGGTTTAGTCCTAAACTTTCTCCAATGTATGTTTTGAACCTCGTAG
261 AAGAATTTTCTAAAGTTCTCGGTTTAGTCCTAAACTTTCTCCAATGTATGTTTTGAACCTCGTAG
*
37312630 GCTCAATTTAGGGGATATATGATTGGTTGTTGAAAATTTTTAATTTGATGCCAAATTTATGGCTT
326 GCTCGATTTAGGGGATATATGATTGGTTGTTGAAAATTTTTAATTTGATGCCAAATTTATGGCTT
*
37312695 GGAAACGTATGTTTTCTTGTGTTTAAGTTCGGTAATTCCTCGTACCCTGTTCCGGCATCGAATAT
391 GGAAACGTATGTTTTCTTGTGTTTAAGTTCAGTAATTCCTCGTACCCTGTTCCGGCATCGAATAT
37312760 GGATAAGGGGTGTTACATTCGTTATTTTAGGTTATTCACTCCAATGCATCTCCCACCATGGCTCA
456 GGATAAGGGGTGTTACATTCGTTATTTTAGGTTATTCACTCCAATGCATCTCCCACCATGGCTCA
37312825 GTTTTTTTAAGGAAAGTGAGAAAGGGAAAATGACTTAATGATGTTTGGTTTTTGTTTTTAGACGA
521 GTTTTTTTAAGGAAAGTGAGAAAGGGAAAATGACTTAATGATGTTTGGTTTTTGTTTTTAGACGA
37312890 GGATATGTTGCACCATCACAAGGAG-AGCGTCGAAAGGAGTAAAGGAAGCAGCAGCAAGAACGTT
586 GGATATGTTGCACCATCACAAGGAGTAGCGTCGAAAGGAGTAAAGGAAGCAGCAGCAAGAACGTT
37312954 GTTGTGTTGAAGGAATACATGACAACAACAACAACAAACAAAGACAAAGTTAACTGGGTTTTGGA
651 GTTGTGTTGAAGGAATACATGACAACAACAACAACAAACAAAGACAAAGTTAACTGGGTTTTGGA
37313019 TCTAGTTTCCAAATTCT
716 TCTAGTTTCCAAATTCT
37313036 ATA
1 ATA
37313039 AACCTAGAAC
Statistics
Matches: 2182, Mismatches: 14, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
731 851 0.39
732 1331 0.61
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (732 bp):
ATAGGGACATGGGCGTGTGTCTAGGGCGTGTGAAGTCTGCACCTATTTTATGAAAAATTTTAAAA
ATTAAATTCGCCACACAGCCCAGCACACGGGTGTGTGACACGCCCGTGTGACTTTCCTTGGTGCA
TGACGTCATAAACAGAGAGTTACACAGGTTAAGACACGGGTGTGTTTGACCATACGGCCTACCCA
CACGGGCATGTCTCAAGCCACACAAGCGTGTGACCCTGTTTTGATGAAAAATTTTCTAAGTGTTG
AAGAATTTTCTAAAGTTCTCGGTTTAGTCCTAAACTTTCTCCAATGTATGTTTTGAACCTCGTAG
GCTCGATTTAGGGGATATATGATTGGTTGTTGAAAATTTTTAATTTGATGCCAAATTTATGGCTT
GGAAACGTATGTTTTCTTGTGTTTAAGTTCAGTAATTCCTCGTACCCTGTTCCGGCATCGAATAT
GGATAAGGGGTGTTACATTCGTTATTTTAGGTTATTCACTCCAATGCATCTCCCACCATGGCTCA
GTTTTTTTAAGGAAAGTGAGAAAGGGAAAATGACTTAATGATGTTTGGTTTTTGTTTTTAGACGA
GGATATGTTGCACCATCACAAGGAGTAGCGTCGAAAGGAGTAAAGGAAGCAGCAGCAAGAACGTT
GTTGTGTTGAAGGAATACATGACAACAACAACAACAAACAAAGACAAAGTTAACTGGGTTTTGGA
TCTAGTTTCCAAATTCT
Found at i:37318085 original size:19 final size:19
Alignment explanation
Indices: 37318060--37318150 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
37318050 ATAATCTTCA
37318060 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
37318079 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
37318098 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
37318115 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
37318133 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
37318151 AAATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:37318100 original size:14 final size:15
Alignment explanation
Indices: 37318081--37318136 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
37318071 TCTTAGATGT
37318081 GATATG-CAATCTTA
1 GATATGACAATCTTA
37318095 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
37318112 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
37318130 GATATGA
1 GATATGA
37318137 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:37318130 original size:35 final size:37
Alignment explanation
Indices: 37318060--37318150 Score: 141
Period size: 35 Copynumber: 2.5 Consensus size: 37
37318050 ATAATCTTCA
*
37318060 ATGATATGCAATCTTAGATGTGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
37318098 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
37318133 ATGATATGCAATCTTAGA
1 ATGATA-GCAATCTTAGA
37318151 AAATATGATT
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.38
36 15 0.30
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:37324917 original size:9 final size:9
Alignment explanation
Indices: 37324895--37324928 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
37324885 CTTCTATTTG
*
37324895 AAAAAAAAGG
1 AAAAAAAA-T
37324905 AAAAAAAAT
1 AAAAAAAAT
37324914 AAAAAAAAT
1 AAAAAAAAT
37324923 AAAAAA
1 AAAAAA
37324929 TAGAGAGGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.88, C:0.00, G:0.06, T:0.06
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:37325956 original size:44 final size:44
Alignment explanation
Indices: 37325899--37326063 Score: 231
Period size: 44 Copynumber: 3.8 Consensus size: 44
37325889 GATCCAAGAT
* *
37325899 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATTGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATTGAAGATAACA
* *
37325943 AATTTGGCATCTCTGTATTGGCAGAGAGCAAATTGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATTGAAGATAACA
* * * *
37325987 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCGAAGACAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATTGAAGATAACA
* * *
37326031 GATTTGGCGTATCTGTATTGGCAGGGAGCAGAT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
37326064 CGAGGACATA
Statistics
Matches: 107, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 107 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATTGAAGATAACA
Found at i:37326136 original size:87 final size:87
Alignment explanation
Indices: 37326031--37326507 Score: 792
Period size: 87 Copynumber: 5.5 Consensus size: 87
37326021 GAAGACAGCA
* * *
37326031 GATTTGGCGTATCTGTATTGGCAGGGAGCAGATCGAGGACATAACTGATTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
*
37326096 TACCTTGAAGCAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
*
37326118 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGTTGATTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
37326183 TACGTTGAAGCAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
*
37326205 GATTTGGCGTCTCTGTATTGGCAAGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
*
37326270 TGCGTTGAAGCAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
* * *
37326292 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAGGACATAGCTGATTTGGTTTTCACTTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
*
37326357 TGCGTTGAAGCAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
* *
37326379 GATTTGGCGTCTCTGTATTGGTAGGGAGCATATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
*
37326444 TACGTTGAAGCAAATCCAAGAT
66 TACGTTGAAGCAAATCTAAGAT
* * *
37326466 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACA
1 GATTTGGCGTCTCTGTATT-GGCAGGGAGCAGATCGAAGACA
37326508 CAACAGATCT
Statistics
Matches: 365, Mismatches: 24, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
87 347 0.95
88 18 0.05
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (87 bp):
GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
TACGTTGAAGCAAATCTAAGAT
Found at i:37326577 original size:78 final size:78
Alignment explanation
Indices: 37326448--37326682 Score: 427
Period size: 78 Copynumber: 3.0 Consensus size: 78
37326438 CGTGTTTACG
*
37326448 TTGAAGCAAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACA
1 TTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACA
37326513 GATCTGACCTTCA
66 GATCTGACCTTCA
37326526 TTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACA
1 TTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACA
37326591 GAT-TAGACCTTCA
66 GATCT-GACCTTCA
* *
37326604 TTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 TTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACA
37326669 GATCTGACCTTCA
66 GATCTGACCTTCA
37326682 T
1 T
37326683 GTGTTTACAT
Statistics
Matches: 152, Mismatches: 3, Indels: 4
0.96 0.02 0.03
Matches are distributed among these distances:
77 1 0.01
78 150 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (78 bp):
TTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACA
GATCTGACCTTCA
Found at i:37326776 original size:45 final size:45
Alignment explanation
Indices: 37326622--37326895 Score: 232
Period size: 45 Copynumber: 6.1 Consensus size: 45
37326612 GATCCAAGAT
* *
37326622 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAG--ATAACA
* * * * * * ** *
37326669 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATTGAAGATAACA
* * * * *
37326714 GATTTGACATCTTTGTATTAGACGGGGAGAAAATTGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGATAACA
* **
37326759 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATTGAAGA-AGTA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGATAACA
* * * *
37326803 AATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGATAACA
* ** *
37326848 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGATAACA
37326893 GAT
1 GAT
37326896 ATCGCCTTCC
Statistics
Matches: 180, Mismatches: 40, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
43 1 0.01
44 42 0.23
45 107 0.59
46 3 0.02
47 22 0.12
48 4 0.02
49 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGATAACA
Found at i:37327256 original size:17 final size:17
Alignment explanation
Indices: 37327242--37327339 Score: 101
Period size: 17 Copynumber: 5.5 Consensus size: 17
37327232 ATAATCTTCA
*
37327242 ATGATATGCAATCTTAA
1 ATGATATGCAATCTTAG
37327259 ATGTGATATGCAATCTTAG
1 A--TGATATGCAATCTTAG
*
37327278 AT-ATGATACAATCTTAG
1 ATGAT-ATGCAATCTTAG
37327295 AT-ATGATTGCAATCTTAG
1 ATGAT-A-TGCAATCTTAG
37327313 ATATGATATGCAATCTTAG
1 --ATGATATGCAATCTTAG
37327332 ATGATATG
1 ATGATATG
37327340 ATTTTGTAAT
Statistics
Matches: 71, Mismatches: 3, Indels: 14
0.81 0.03 0.16
Matches are distributed among these distances:
16 2 0.03
17 27 0.38
18 10 0.14
19 27 0.38
20 3 0.04
21 2 0.03
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (17 bp):
ATGATATGCAATCTTAG
Found at i:37327267 original size:19 final size:19
Alignment explanation
Indices: 37327242--37327333 Score: 145
Period size: 19 Copynumber: 5.0 Consensus size: 19
37327232 ATAATCTTCA
*
37327242 ATGATATGCAATCTTAAAT
1 ATGATATGCAATCTTAGAT
*
37327261 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
37327280 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
37327297 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
37327315 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
37327334 GATATGATTT
Statistics
Matches: 67, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:37327282 original size:14 final size:15
Alignment explanation
Indices: 37327263--37327318 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
37327253 TCTTAAATGT
37327263 GATATG-CAATCTTA
1 GATATGACAATCTTA
37327277 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
37327294 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
37327312 GATATGA
1 GATATGA
37327319 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:37327311 original size:35 final size:37
Alignment explanation
Indices: 37327242--37327333 Score: 134
Period size: 35 Copynumber: 2.5 Consensus size: 37
37327232 ATAATCTTCA
* *
37327242 ATGATATGCAATCTTAAATGTGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
37327280 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
37327315 ATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGAT
37327334 GATATGATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
35 19 0.38
36 14 0.28
37 11 0.22
38 6 0.12
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:37330792 original size:6 final size:7
Alignment explanation
Indices: 37330777--37330802 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
37330767 CGCTTTGAAA
37330777 TTTTATT
1 TTTTATT
37330784 TTTTATT
1 TTTTATT
37330791 TTTTATT
1 TTTTATT
37330798 TTTTA
1 TTTTA
37330803 AAAGGGAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTATT
Found at i:37330902 original size:19 final size:19
Alignment explanation
Indices: 37330878--37330915 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
37330868 GAAATGAATA
37330878 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
*
37330897 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
37330916 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:37334213 original size:24 final size:23
Alignment explanation
Indices: 37334165--37334222 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 23
37334155 TTGAATGAAA
* *
37334165 TTTTAAATTTTTATAGTATATAT
1 TTTTAAATTTTTAAAGGATATAT
37334188 TTTTATAATTTTTAAAGGAT-TA-
1 TTTTA-AATTTTTAAAGGATATAT
*
37334210 ATTTAAATTTTTA
1 TTTTAAATTTTTA
37334223 TAATTTTAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 8 0.26
22 4 0.13
23 7 0.23
24 12 0.39
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (23 bp):
TTTTAAATTTTTAAAGGATATAT
Found at i:37334760 original size:33 final size:33
Alignment explanation
Indices: 37334719--37334781 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
37334709 AGACAAATGG
*
37334719 AAAAAATATTTAATAGAAATAATTAATTTATTA
1 AAAAAATATTTAATAGAAATAACTAATTTATTA
*
37334752 AAAAAATATTTAATAGAAATGACTAATTTA
1 AAAAAATATTTAATAGAAATAACTAATTTA
37334782 CTCTTTAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.37
Consensus pattern (33 bp):
AAAAAATATTTAATAGAAATAACTAATTTATTA
Found at i:37348598 original size:22 final size:22
Alignment explanation
Indices: 37348570--37348612 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
37348560 CAATTCAAAG
37348570 AGTGCCGGACAAGGAGCGTAGT
1 AGTGCCGGACAAGGAGCGTAGT
37348592 AGTGCCGGACAAGGAGCGTAG
1 AGTGCCGGACAAGGAGCGTAG
37348613 CATGCTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.19, G:0.42, T:0.12
Consensus pattern (22 bp):
AGTGCCGGACAAGGAGCGTAGT
Found at i:37356017 original size:50 final size:48
Alignment explanation
Indices: 37355942--37356078 Score: 202
Period size: 49 Copynumber: 2.8 Consensus size: 48
37355932 GTTATTGTGG
*
37355942 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATGCGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAAGAT--GAGA
* *
37355992 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAAGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGAAGATGAGA
* *
37356041 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
37356079 CTTACTCCAT
Statistics
Matches: 80, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
48 2 0.03
49 36 0.45
50 35 0.44
51 7 0.09
ACGTcount: A:0.27, C:0.22, G:0.31, T:0.20
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAAGATGAGA
Found at i:37377748 original size:46 final size:47
Alignment explanation
Indices: 37377698--37377822 Score: 134
Period size: 47 Copynumber: 2.7 Consensus size: 47
37377688 TCCCGAGGCT
*
37377698 GATGCATGTTCCAGACATGTCTTACACTAGCACTCGTC-TCAA-T-ACC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTC-TCAT-AAGTCACC
* * *
37377744 GATGCCATGTCCCAAACAAGGTCTTACACT--CACTCTCATAATGTCGCC
1 GATG-CATGTCCCAGAC-ATGTCTTACACTAGCACTCTCATAA-GTCACC
37377792 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
37377823 TCATACAAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 14
0.76 0.07 0.16
Matches are distributed among these distances:
45 4 0.06
46 21 0.32
47 22 0.34
48 18 0.28
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCTCATAAGTCACC
Found at i:37381323 original size:16 final size:16
Alignment explanation
Indices: 37381302--37381333 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37381292 GTCCCTATAC
37381302 ATGCCAGAAAACAAAA
1 ATGCCAGAAAACAAAA
*
37381318 ATGCCATAAAACAAAA
1 ATGCCAGAAAACAAAA
37381334 CAAGGAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.62, C:0.19, G:0.09, T:0.09
Consensus pattern (16 bp):
ATGCCAGAAAACAAAA
Found at i:37387582 original size:27 final size:27
Alignment explanation
Indices: 37387547--37387683 Score: 202
Period size: 27 Copynumber: 5.1 Consensus size: 27
37387537 GCCGAAATGG
37387547 TGACCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAA
* *
37387574 TGACCGAAATACCCTCATAGTGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAA
* *
37387601 TGACCGAAATACCCTCATGGGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAA
37387628 TGACCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAA
* * **
37387655 TGGCCGAAATACCTCTGTAGGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAA
37387682 TG
1 TG
37387684 TCTGTAATAC
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (27 bp):
TGACCGAAATACCCCCATAGGGTAAAA
Found at i:37387692 original size:27 final size:27
Alignment explanation
Indices: 37387550--37387710 Score: 141
Period size: 27 Copynumber: 6.0 Consensus size: 27
37387540 GAAATGGTGA
** *
37387550 CCGAAATACCCCCATAGGGTAAAATGA
1 CCGAAATACCCCTGTAGGGTAAAATGG
* * *
37387577 CCGAAATA-CCCTCATAGTGTAAAATGA
1 CCGAAATACCCCT-GTAGGGTAAAATGG
*
37387604 CCGAAATACCCTCATG--GGGTAAAATGA
1 CCGAAATACCC-C-TGTAGGGTAAAATGG
**
37387631 CCGAAATACCCCCATAGGGTAAAATGG
1 CCGAAATACCCCTGTAGGGTAAAATGG
* *
37387658 CCGAAATACCTCTGTAGGGTAAAATGT
1 CCGAAATACCCCTGTAGGGTAAAATGG
* *
37387685 CTGTAATACCCCTGT-GAGGTAAAATG
1 CCGAAATACCCCTGTAG-GGTAAAATG
37387711 ACTGATTTTC
Statistics
Matches: 113, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
26 5 0.04
27 104 0.92
28 2 0.02
29 1 0.01
30 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20
Consensus pattern (27 bp):
CCGAAATACCCCTGTAGGGTAAAATGG
Found at i:37387693 original size:81 final size:81
Alignment explanation
Indices: 37387547--37387712 Score: 230
Period size: 81 Copynumber: 2.0 Consensus size: 81
37387537 GCCGAAATGG
*
37387547 TGACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGTGTAAAATGACCGAAATA
1 TGACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATA
37387612 CCCTCATG-G-GGTAAAA
66 CCC-C-TGTGAGGTAAAA
* * * * *
37387628 TGACCGAAATACCCCCATAGGGTAAAATGGCCGAAATA-CCTCTGTAGGGTAAAATGTCTGTAAT
1 TGACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCTC-ATAGGGTAAAATGACCGAAAT
37387692 ACCCCTGTGAGGTAAAA
65 ACCCCTGTGAGGTAAAA
37387709 TGAC
1 TGAC
37387713 TGATTTTCCC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
79 2 0.03
80 6 0.08
81 68 0.89
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20
Consensus pattern (81 bp):
TGACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATA
CCCCTGTGAGGTAAAA
Found at i:37396953 original size:19 final size:20
Alignment explanation
Indices: 37396902--37396956 Score: 73
Period size: 17 Copynumber: 3.0 Consensus size: 20
37396892 GTAAAGTGTA
37396902 AAAGTTGGGTTCTAATAGCT
1 AAAGTTGGGTTCTAATAGCT
*
37396922 AAAG--GGG-TCTAATAGGT
1 AAAGTTGGGTTCTAATAGCT
37396939 -AAGTTGGGTTCTAATAGC
1 AAAGTTGGGTTCTAATAGC
37396957 AAAATTCCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
16 3 0.10
17 9 0.30
18 6 0.20
19 8 0.27
20 4 0.13
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.31
Consensus pattern (20 bp):
AAAGTTGGGTTCTAATAGCT
Found at i:37399098 original size:27 final size:30
Alignment explanation
Indices: 37399055--37399109 Score: 89
Period size: 27 Copynumber: 1.9 Consensus size: 30
37399045 ACCTACAATT
37399055 AAACACATTTAAACACTT-AC-TAAATACA
1 AAACACATTTAAACACTTAACTTAAATACA
37399083 AAACACA-TTAAACACTTAACTTAAATA
1 AAACACATTTAAACACTTAACTTAAATA
37399110 AATGAACTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 10 0.40
28 9 0.36
29 6 0.24
ACGTcount: A:0.55, C:0.20, G:0.00, T:0.25
Consensus pattern (30 bp):
AAACACATTTAAACACTTAACTTAAATACA
Found at i:37399308 original size:52 final size:50
Alignment explanation
Indices: 37399249--37399357 Score: 130
Period size: 50 Copynumber: 2.1 Consensus size: 50
37399239 ATGAGTTATT
*
37399249 TAATGCAAGAC-TTAATTTAATAATCCAGACTTAAACTAACATGAGAGTTACA
1 TAATGCAAGACATT-ATTT-ATAATCCAGACTT-AACTAACATGAAAGTTACA
* * * * *
37399301 TAGTGCAAGTCATTATTTATGATGCATACTTAACTAACATGAAAGTTACA
1 TAATGCAAGACATTATTTATAATCCAGACTTAACTAACATGAAAGTTACA
37399351 TAATGCA
1 TAATGCA
37399358 TTACTTTATT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
50 24 0.49
51 10 0.20
52 13 0.27
53 2 0.04
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (50 bp):
TAATGCAAGACATTATTTATAATCCAGACTTAACTAACATGAAAGTTACA
Found at i:37404117 original size:46 final size:46
Alignment explanation
Indices: 37404016--37404234 Score: 148
Period size: 46 Copynumber: 4.7 Consensus size: 46
37404006 CTCTATACGT
*
37404016 GCCGATGCCATGTCCTAGACATGGTCTTACACT-G---ACAATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTAC-ATCTCG-AG
*
37404061 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
* * * * * *
37404107 GCCGATGCATGTCCCAAATATGTCTTACACTAG-TTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTT-ACATCTCGAG
* * * * *
37404153 ACCGATACCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTG
1 GCCGAT-GCATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTCGAG
* * * *
37404201 TCTGATGCATGTCCTAGACATGCCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
37404235 ACACAAGTAA
Statistics
Matches: 138, Mismatches: 25, Indels: 21
0.75 0.14 0.11
Matches are distributed among these distances:
43 10 0.07
44 14 0.10
45 9 0.07
46 58 0.42
47 27 0.20
48 17 0.12
49 2 0.01
50 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
Found at i:37411884 original size:46 final size:45
Alignment explanation
Indices: 37411826--37411997 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 45
37411816 ATCTTGTAGC
* *
37411826 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATCTC-AGGT
* *
37411872 CGATGCATGTCCCAGACATGTCTTACATTAG-TTCTCATCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT-TCATCTC-AGGT
* * *
37411918 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAAT-ATGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTTCAT-CTCA-GGT
37411966 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
37411998 ACACAAATAA
Statistics
Matches: 109, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
45 2 0.02
46 55 0.50
47 29 0.27
48 20 0.18
49 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATCTCAGGT
Found at i:37411971 original size:48 final size:47
Alignment explanation
Indices: 37411646--37411994 Score: 195
Period size: 46 Copynumber: 7.4 Consensus size: 47
37411636 TCCCATGTTT
* * * *
37411646 CAGACATGGTCTTACACTGACTATTGAAATCGA-GGCCGATGCCATGTTC
1 CAGACATGGTCTTACACTGGCT-TTCATAT--ATGGCCGATGCCATGTCC
* * * *
37411695 CAGACATGGTCTTACACTAGCTCTCACATATTCGTGCCGATGCCTTGTCC
1 CAGACATGGTCTTACACTGGCTTTCATATA-T-G-GCCGATGCCATGTCC
* * * ** * * *
37411745 CAAACATGGTCTTACATTGACACCTC-TATACGTGTCGATACCATGTCC
1 CAGACATGGTCTTACACTGGC-TTTCATATATG-GCCGATGCCATGTCC
* * * *
37411793 CAAACATGGTCTTACACTGAC--ACATCT-TGTAGCCGATG-CATGTCC
1 CAGACATGGTCTTACACTGGCTTTCATATATG--GCCGATGCCATGTCC
* * * * *
37411838 CAGACAT-GTCTTACACTAGCTTACGTCTCGA-GGTCGATG-CATGTCC
1 CAGACATGGTCTTACACTGGCTTTCATAT--ATGGCCGATGCCATGTCC
* * * *
37411884 CAGACAT-GTCTTACATTAG-TTCTCATCTCAAT-GTCGATGCCATGTCC
1 CAGACATGGTCTTACACTGGCTT-TCATAT--ATGGCCGATGCCATGTCC
37411931 CAGACATGGTCTTACACTGGCTTTCATAATATGGCCGATG-CATGTCC
1 CAGACATGGTCTTACACTGGCTTTCAT-ATATGGCCGATGCCATGTCC
37411978 CAGACAT-GTCTTACACT
1 CAGACATGGTCTTACACT
37411995 AGCACACAAA
Statistics
Matches: 244, Mismatches: 37, Indels: 41
0.76 0.11 0.13
Matches are distributed among these distances:
44 11 0.05
45 17 0.07
46 67 0.27
47 30 0.12
48 59 0.24
49 24 0.10
50 33 0.14
51 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
CAGACATGGTCTTACACTGGCTTTCATATATGGCCGATGCCATGTCC
Found at i:37422307 original size:48 final size:47
Alignment explanation
Indices: 37422255--37422390 Score: 157
Period size: 48 Copynumber: 2.8 Consensus size: 47
37422245 ACATGGTAGA
* *
37422255 ATGCCAATTCCGTATCTCGGATATGGTCTTACATGGGATCGTAGATCG
1 ATGCCAATTCC-TATCTCAGACATGGTCTTACATGGGATCGTAGATCG
* *
37422303 ATGCCAA-TGCTATGTCCTAGACATGGTCTTACATGGGATCGTAGATCG
1 ATGCCAATTCCTATCT-C-AGACATGGTCTTACATGGGATCGTAGATCG
* * * *
37422351 ATGCAAATGCCATGTCCCAGACATGGTCTTACATGGGATC
1 ATGCCAATTCC-TATCTCAGACATGGTCTTACATGGGATC
37422391 ACATATCGAT
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
46 4 0.05
47 3 0.04
48 63 0.85
49 2 0.03
50 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (47 bp):
ATGCCAATTCCTATCTCAGACATGGTCTTACATGGGATCGTAGATCG
Found at i:37422399 original size:48 final size:47
Alignment explanation
Indices: 37422277--37422475 Score: 172
Period size: 48 Copynumber: 4.3 Consensus size: 47
37422267 TATCTCGGAT
** * * *
37422277 ATGGTCTTACATGGGATCGTAGATCGATGCCAATGCTATGTCCTAGAC
1 ATGGTCTTACATGGGATCACAGATCGATGCAAAT-CCATGTCCCAGAC
**
37422325 ATGGTCTTACATGGGATCGTAGATCGATGCAAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACAGATCGATGCAAAT-CCATGTCCCAGAC
* ** **
37422373 ATGGTCTTACATGGGATCACATATCGATGCCGAT--A-G-CCCAGTT
1 ATGGTCTTACATGGGATCACAGATCGATGCAAATCCATGTCCCAGAC
* * ** * * *
37422416 TTGGTCTTACACGAAATTACATATTGATGCCAAATCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACAGATCGATG-CAAATCCATGTCCCAGAC
37422464 ATGGTCTTACAT
1 ATGGTCTTACAT
37422476 TGGGGCATAC
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
43 28 0.23
44 4 0.03
45 1 0.01
46 1 0.01
47 1 0.01
48 89 0.72
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
ATGGTCTTACATGGGATCACAGATCGATGCAAATCCATGTCCCAGAC
Found at i:37429682 original size:42 final size:43
Alignment explanation
Indices: 37429626--37429737 Score: 129
Period size: 42 Copynumber: 2.6 Consensus size: 43
37429616 AGATTTATGA
* * *
37429626 GTAAGACCATGTTTGGGACATTGGCATCG-TATATAATTTCGT
1 GTAAGACCCTGTTTGGGACATTGGCATCGATATATAATTACAT
* * * *
37429668 GTAAGACCCTGTTTGGGATAGTGGCATCGATATTTGATTACAT
1 GTAAGACCCTGTTTGGGACATTGGCATCGATATATAATTACAT
*
37429711 GTAAGA-CCTCGTTTGGGACGTTGGCAT
1 GTAAGACCCT-GTTTGGGACATTGGCAT
37429738 TGTACGAGCA
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 29 0.50
43 29 0.50
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (43 bp):
GTAAGACCCTGTTTGGGACATTGGCATCGATATATAATTACAT
Found at i:37429727 original size:43 final size:42
Alignment explanation
Indices: 37429626--37429737 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 42
37429616 AGATTTATGA
* * *
37429626 GTAAGACCAT-GTTTGGGACATTGGCATCGTATATAATTTCGT
1 GTAAGACC-TCGTTTGGGACAGTGGCATCGTATATAATTACAT
* * *
37429668 GTAAGACC-CTGTTTGGGATAGTGGCATCGATATTTGATTACAT
1 GTAAGACCTC-GTTTGGGACAGTGGCATCG-TATATAATTACAT
37429711 GTAAGACCTCGTTTGGGAC-GTTGGCAT
1 GTAAGACCTCGTTTGGGACAG-TGGCAT
37429738 TGTACGAGCA
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
42 26 0.45
43 31 0.53
44 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (42 bp):
GTAAGACCTCGTTTGGGACAGTGGCATCGTATATAATTACAT
Found at i:37442063 original size:18 final size:17
Alignment explanation
Indices: 37442035--37442068 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
37442025 GGCTTTAACC
37442035 CATTACAGAATAAGAAA
1 CATTACAGAATAAGAAA
*
37442052 CATTATCAGAATTAGAA
1 CATTA-CAGAATAAGAA
37442069 TTAGAATCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
CATTACAGAATAAGAAA
Found at i:37442068 original size:24 final size:24
Alignment explanation
Indices: 37442041--37442118 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
37442031 AACCCATTAC
**
37442041 AGAATAAGAAACATTATCAGAATT
1 AGAATAAGAAACAGAATCAGAATT
* *
37442065 AGAATTAGAATCAGAATCAGAATT
1 AGAATAAGAAACAGAATCAGAATT
* * *
37442089 AG-GTGACAGAATCAGAATCAGAATC
1 AGAAT-A-AGAAACAGAATCAGAATT
37442114 AGAAT
1 AGAAT
37442119 CAGTATCAGG
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
23 1 0.02
24 22 0.51
25 19 0.44
26 1 0.02
ACGTcount: A:0.50, C:0.10, G:0.18, T:0.22
Consensus pattern (24 bp):
AGAATAAGAAACAGAATCAGAATT
Found at i:37442104 original size:6 final size:6
Alignment explanation
Indices: 37442056--37442181 Score: 78
Period size: 6 Copynumber: 20.3 Consensus size: 6
37442046 AAGAAACATT
* * * *
37442056 ATCAGA ATTAGA ATTAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * * *
37442105 ATCAGA ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAAA AACAGA ATTAGT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
*
37442154 ATCAGGTA A-CAGA ATCAAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATC-AGA ATCAGA AT
37442182 GTGAATGCAA
Statistics
Matches: 92, Mismatches: 18, Indels: 20
0.71 0.14 0.15
Matches are distributed among these distances:
5 6 0.07
6 70 0.76
7 12 0.13
8 4 0.04
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:37442137 original size:31 final size:31
Alignment explanation
Indices: 37442070--37442181 Score: 122
Period size: 31 Copynumber: 3.6 Consensus size: 31
37442060 GAATTAGAAT
*
37442070 TAGAATCAGAATCAGAATTAGGTGA-CA-G-AA
1 TAGAATCAAAATCAGAATTA-GT-ATCAGGTAA
* *
37442100 TCAGAATCAGAATCAGAATCAGTATCAGGTAA
1 T-AGAATCAAAATCAGAATTAGTATCAGGTAA
*
37442132 TAGAATCAAAAACAGAATTAGTATCAGGTAA
1 TAGAATCAAAATCAGAATTAGTATCAGGTAA
*
37442163 CAGAATCAAAAATCAGAAT
1 TAGAATC-AAAATCAGAAT
37442182 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
29 1 0.01
30 5 0.07
31 52 0.73
32 13 0.18
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (31 bp):
TAGAATCAAAATCAGAATTAGTATCAGGTAA
Found at i:37442137 original size:37 final size:37
Alignment explanation
Indices: 37442058--37442181 Score: 125
Period size: 37 Copynumber: 3.5 Consensus size: 37
37442048 GAAACATTAT
* * * * *
37442058 CAGAATTAGAATTAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGTATCAGGTAA
37442095 CAGAATCAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGTATCAGGTAA
* *
37442132 TAGAATC--AA--A-AA-CAGAATTAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGTATCAGGTAA
*
37442163 CAGAATCAAAAATCAGAAT
1 CAGAATC-AGAATCAGAAT
37442182 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
31 24 0.33
32 2 0.03
33 1 0.01
34 2 0.03
35 2 0.03
36 1 0.01
37 40 0.56
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (37 bp):
CAGAATCAGAATCAGAATCAGAATCAGTATCAGGTAA
Found at i:37442376 original size:26 final size:27
Alignment explanation
Indices: 37442318--37442419 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
37442308 GCTCAGTTAT
* * * * *
37442318 CAGATGTTGTGACAAAGTCACTAGATA
1 CAGATATTGTGGCAAAGCCACCAGAAA
*
37442345 CAGATATTGTGGCAGAGCCACCAG-AA
1 CAGATATTGTGGCAAAGCCACCAGAAA
* *
37442371 CAGATATTTGTGGCATAGCCATCAGAAA
1 CAGATA-TTGTGGCAAAGCCACCAGAAA
* *
37442399 CAGATAATGTGGAAAAGCCAC
1 CAGATATTGTGGCAAAGCCAC
37442420 TTAACAGAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
26 7 0.11
27 46 0.75
28 8 0.13
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGAAA
Found at i:37442606 original size:22 final size:22
Alignment explanation
Indices: 37442578--37442642 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
37442568 GCAAATACGT
*
37442578 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
37442600 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
37442622 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
37442643 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:37443101 original size:27 final size:27
Alignment explanation
Indices: 37443062--37443373 Score: 462
Period size: 27 Copynumber: 11.6 Consensus size: 27
37443052 TACCCCACAA
* * *
37443062 GGTATCTCGGTAATTCCACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
37443089 GGTATTTCAGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
37443116 GGTATTGCGGTAATTCTACACTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
37443143 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
37443170 GGTATTTCGGTAATTGTACCTTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
37443197 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
** *
37443224 GGTATTTTTGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
37443251 GGTATTGCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
37443278 GGTATTTCGGTAATTCTACCCTACAGA
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
37443305 GGTATTCCGGTAATTCTACCCTACAGA
1 GGTATTTCGGTAATTCTACCCTACAGG
37443332 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
37443359 GGTATTTCGGTAATT
1 GGTATTTCGGTAATT
37443374 TTGTAAGTCG
Statistics
Matches: 256, Mismatches: 29, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 256 1.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:37443388 original size:27 final size:27
Alignment explanation
Indices: 37443358--37443509 Score: 126
Period size: 27 Copynumber: 5.6 Consensus size: 27
37443348 TACCCTACAG
* *
37443358 GGGTATTTCGGTAATTTTGTAAGTCGA
1 GGGTATTTCAGTAATTTTATAAGTCGA
*** * * * * *
37443385 GGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTATTTCAGTAATTTTATAAGTCGA
*
37443412 TGGTACTTT-AGTAATTTTATAAGTCGA
1 GGGTA-TTTCAGTAATTTTATAAGTCGA
* * *
37443439 GGGTATTTTAATAATTTTATAGGTCGA
1 GGGTATTTCAGTAATTTTATAAGTCGA
* * *
37443466 GGGTATTTCAATAATTTTATAGGTCAA
1 GGGTATTTCAGTAATTTTATAAGTCGA
*
37443493 GGGTATTTTAGTAATTT
1 GGGTATTTCAGTAATTT
37443510 CACAAATTAG
Statistics
Matches: 101, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 3 0.03
27 98 0.97
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTATAAGTCGA
Found at i:37443786 original size:27 final size:27
Alignment explanation
Indices: 37443493--37443779 Score: 351
Period size: 27 Copynumber: 10.6 Consensus size: 27
37443483 TATAGGTCAA
* * **
37443493 GGGTATTTTAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
37443520 AGATATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
37443547 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
37443574 GGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
37443601 GTGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
37443628 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
37443655 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
37443682 GAGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
37443709 GGGTATTTTGGTGATTTTATAAACC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
**
37443735 AGGGTATTTTATTAATTTTACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
37443763 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
37443780 AGTAAACTAA
Statistics
Matches: 221, Mismatches: 37, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.00
27 219 0.99
28 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:37445749 original size:6 final size:6
Alignment explanation
Indices: 37445731--37445777 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
37445721 AAGAAACATT
* *
37445731 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAGA ATCAGT ATCAG
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
37445778 GTAATAGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
5 1 0.03
6 34 0.94
7 1 0.03
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:37446012 original size:27 final size:27
Alignment explanation
Indices: 37445906--37446010 Score: 156
Period size: 27 Copynumber: 3.9 Consensus size: 27
37445896 ACCCACCCAG
*
37445906 CCCTACAGGGGTATTACGATAATTCTA
1 CCCTACAGGGGTATTTCGATAATTCTA
* * *
37445933 CCCTATACGGGTATTTCGGTAATTCTA
1 CCCTACAGGGGTATTTCGATAATTCTA
* *
37445960 CCCTACAGGGGTATTTCGGTAATTTTA
1 CCCTACAGGGGTATTTCGATAATTCTA
37445987 CCCTACAGGGGTATTTCGATAATT
1 CCCTACAGGGGTATTTCGATAATT
37446011 TTGTAAATTG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
CCCTACAGGGGTATTTCGATAATTCTA
Found at i:37446025 original size:27 final size:27
Alignment explanation
Indices: 37445995--37446341 Score: 102
Period size: 27 Copynumber: 12.9 Consensus size: 27
37445985 TACCCTACAG
* *
37445995 GGGTATTTCGATAATTTTGTAAATTGA
1 GGGTATTTCGATAATTTTATAAATCGA
*** * *
37446022 GGGTAAAACGATAATTCTATAAATCAA
1 GGGTATTTCGATAATTTTATAAATCGA
* * *
37446049 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCGATAATTTTATAAATCGA
* * ** *
37446076 GGGTATTTCAATAATTTTACAGGTCAA
1 GGGTATTTCGATAATTTTATAAATCGA
* * *
37446103 AGGTATTTC-AGTAATTTCACAAATC-A
1 GGGTATTTCGA-TAATTTTATAAATCGA
* * * * *
37446129 GAGATATTTTGGTAATTTTACAAA-CTA
1 G-GGTATTTCGATAATTTTATAAATCGA
* * *
37446156 GGCGTATTTTGATAATTTTACAAA-CCA
1 GG-GTATTTCGATAATTTTATAAATCGA
* * * *
37446183 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTCGATAATTTTATAAATCGA
* **
37446210 GGGGTATTT-TAGTAATTTTATAAATAAA
1 -GGGTATTTCGA-TAATTTTATAAATCGA
* * *
37446238 GGGTATTT-TAGTAATTTTACAAA-CCA
1 GGGTATTTCGA-TAATTTTATAAATCGA
* * * * *
37446264 GGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTCGATAATTTTATAAATCGA
* * * *
37446292 GGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTATTTCGATAATTTTATAAATCGA
* * *
37446318 GGGGTATTTTGGTGATTTTATAAA
1 -GGGTATTTCGATAATTTTATAAA
37446342 CTAAGGGCAT
Statistics
Matches: 255, Mismatches: 51, Indels: 28
0.76 0.15 0.08
Matches are distributed among these distances:
26 10 0.04
27 240 0.94
28 5 0.02
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTATAAATCGA
Found at i:37446189 original size:81 final size:80
Alignment explanation
Indices: 37446050--37446389 Score: 319
Period size: 81 Copynumber: 4.2 Consensus size: 80
37446040 ATAAATCAAG
* * * ** *** * *
37446050 GGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTCAAAGGTATTTCAGT
1 GGTATTTTGGTAATTTTACAA-ACTAGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTAGT
*
37446115 AATTTCACAAA-TCAGA
65 AATTTTACAAACT-AGA
* * *
37446131 GATATTTTGGTAATTTTACAAACTAGGCGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACTAGG-GTATTTTGATAATTTTACAAACCAAGGGTATTTTAGT
*
37446196 AATTTTACAAACTAGG
65 AATTTTACAAACTAGA
* * * *
37446212 GGTATTTTAGTAATTTTATAAA-TAAAGGGTATTTT-AGTAATTTTACAAACCAGGGGTATTTTG
1 GGTATTTTGGTAATTTTACAAACT--AGGGTATTTTGA-TAATTTTACAAACCAAGGGTATTTTA
** *
37446275 GTAATTTTGTAAACCA-A
63 GTAATTTTACAAACTAGA
* * * * * *
37446292 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACTAAGGGCATTTTAG
1 -GGTATTTTGGTAATTTTACAAACTA-GGGTATTTTGATAATTTTACAAACCAAGGGTATTTTAG
*
37446357 TAATTTTACAAACTAGG
64 TAATTTTACAAACTAGA
37446374 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
37446390 GGTAAACTAA
Statistics
Matches: 213, Mismatches: 36, Indels: 20
0.79 0.13 0.07
Matches are distributed among these distances:
80 7 0.03
81 202 0.95
82 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (80 bp):
GGTATTTTGGTAATTTTACAAACTAGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTAGTA
ATTTTACAAACTAGA
Found at i:37446342 original size:27 final size:27
Alignment explanation
Indices: 37446104--37446389 Score: 338
Period size: 27 Copynumber: 10.6 Consensus size: 27
37446094 ACAGGTCAAA
** * * *
37446104 GGTATTTCAGTAATTTCACAAATCAGA
1 GGTATTTTGGTAATTTTACAAACCAGG
* *
37446131 GATATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* *
37446158 CGTATTTTGATAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
37446185 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * ** *
37446212 GGTATTTTAGTAATTTTATAAATAAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
37446239 GGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
** *
37446266 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
37446293 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * * *
37446320 GGTATTTTGGTGATTTTATAAACTAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
37446347 GGCATTTTAGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
37446374 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
37446390 GGTAAACTAA
Statistics
Matches: 218, Mismatches: 41, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 218 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGG
Found at i:37446396 original size:54 final size:54
Alignment explanation
Indices: 37446133--37446399 Score: 374
Period size: 54 Copynumber: 4.9 Consensus size: 54
37446123 AAATCAGAGA
* * * * *
37446133 TATTTTGGTAATTTTACAAACTAGGCGTATTTTGATAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAAGGG
*
37446187 TATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTATAAA-TAAAGGG
1 TATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACT-AAGGG
* * * *
37446241 TATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGG
1 TATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAAGGG
* *
37446295 TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACTAAGGG
1 TATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAAGGG
* * **
37446349 CATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTGGTAAACTAA
1 TATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAA
37446400 AGTATTCTAA
Statistics
Matches: 190, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
54 190 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (54 bp):
TATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAAGGG
Found at i:37448827 original size:29 final size:29
Alignment explanation
Indices: 37448792--37448891 Score: 123
Period size: 29 Copynumber: 3.5 Consensus size: 29
37448782 AATGTGACTA
* *
37448792 GGCCTAACGGGCGATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
37448821 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
37448850 GGCCTAATGGGCCATATGAATATGA-TT-
1 GGCCTAATGGGCCATATAAATGTGATTTG
37448877 GGCCTTAATGGGCCA
1 GGCC-TAATGGGCCA
37448892 GATATAGGTA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 4 0.06
28 12 0.19
29 46 0.74
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:37448876 original size:58 final size:57
Alignment explanation
Indices: 37448792--37448900 Score: 139
Period size: 58 Copynumber: 1.9 Consensus size: 57
37448782 AATGTGACTA
* * *
37448792 GGCCTAACGGGCGATATAAATGTGATTTGGGCC-TAATGGGCCATATACAGGTGATTTG
1 GGCCTAACGGGCCATATAAATATGA-TT-GGCCTTAATGGGCCAGATACAGGTGATTTG
* * *
37448850 GGCCTAATGGGCCATATGAATATGATTGGCCTTAATGGGCCAGATATAGGT
1 GGCCTAACGGGCCATATAAATATGATTGGCCTTAATGGGCCAGATACAGGT
37448901 ATGAGAAATT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
56 4 0.09
57 19 0.43
58 21 0.48
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (57 bp):
GGCCTAACGGGCCATATAAATATGATTGGCCTTAATGGGCCAGATACAGGTGATTTG
Found at i:37449840 original size:29 final size:29
Alignment explanation
Indices: 37449805--37449896 Score: 125
Period size: 29 Copynumber: 3.2 Consensus size: 29
37449795 TAGGCCTAAC
37449805 GGGCCATATAAATGTGATTTGGGCTTAAT
1 GGGCCATATAAATGTGATTTGGGCTTAAT
* *
37449834 GGGCCATATATAGGTGATTTGGG-TCTAAT
1 GGGCCATATAAATGTGATTTGGGCT-TAAT
* *
37449863 GGGCCATATGAATATGA-TTGGGCTTAAT
1 GGGCCATATAAATGTGATTTGGGCTTAAT
37449891 GGGCCA
1 GGGCCA
37449897 GATACAGGTA
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
28 16 0.29
29 39 0.71
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (29 bp):
GGGCCATATAAATGTGATTTGGGCTTAAT
Found at i:37450854 original size:29 final size:28
Alignment explanation
Indices: 37450798--37450882 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
37450788 GTGAGCATGA
* **
37450798 TTATGAATGTGACTGGGCCTAACAGGCC
1 TTATGAATGTGATTGGGCCTAATGGGCC
*
37450826 TTATAAATGTGATTTGGGCCTAATGGGCC
1 TTATGAATGTGA-TTGGGCCTAATGGGCC
* * *
37450855 ATATGAATATGATTGGGCTTAATGGGCC
1 TTATGAATGTGATTGGGCCTAATGGGCC
37450883 AGATACAGGC
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 26 0.54
29 22 0.46
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (28 bp):
TTATGAATGTGATTGGGCCTAATGGGCC
Found at i:37451878 original size:29 final size:28
Alignment explanation
Indices: 37451796--37451894 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
37451786 AATGTGACTA
* *
37451796 GGCCTAACGGGCCTTATAATGTGATTTG
1 GGCCTAATGGGCCATATAATGTGATTTG
* *
37451824 GGCCTAATAGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATA-ATGTGATTTG
*
37451853 GGCCTAATGGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATAT-AATGTGATTTG
*
37451881 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
37451895 GATACAAGTA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
28 31 0.51
29 29 0.48
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (28 bp):
GGCCTAATGGGCCATATAATGTGATTTG
Found at i:37455066 original size:37 final size:37
Alignment explanation
Indices: 37455011--37455082 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
37455001 CCACTTAGGG
37455011 AGTAGAGAGGTGCCGTTAGTAGCTAGCAAGGAGATTA
1 AGTAGAGAGGTGCCGTTAGTAGCTAGCAAGGAGATTA
* **
37455048 AGTAGGGAGGTGGTGTTAGTAGCTAGCAAGGAGAT
1 AGTAGAGAGGTGCCGTTAGTAGCTAGCAAGGAGAT
37455083 CCAAGGTTCG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.31, C:0.08, G:0.39, T:0.22
Consensus pattern (37 bp):
AGTAGAGAGGTGCCGTTAGTAGCTAGCAAGGAGATTA
Found at i:37456238 original size:28 final size:29
Alignment explanation
Indices: 37456129--37456242 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
37456119 TGAGCATGAT
* *
37456129 TATGAATGTGA-CTGGGCCTAACGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
37456157 TATAAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
37456186 TAT-ACAGGTGATTTGGGCCTAATGGGCCA
1 TATGA-ATGTGATTTGGGCCTAATGGGCCA
* *
37456215 TATGAATATGA-TTGGGCTTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
37456243 GATACAGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
28 27 0.36
29 48 0.63
30 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:37456250 original size:57 final size:58
Alignment explanation
Indices: 37456141--37456251 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 58
37456131 TGAATGTGAC
* *
37456141 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
* * *
37456199 TGGGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGT
37456252 ATGTGAAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 24 0.50
58 24 0.50
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:37457161 original size:29 final size:29
Alignment explanation
Indices: 37457126--37457231 Score: 176
Period size: 29 Copynumber: 3.7 Consensus size: 29
37457116 TGAATGTGAC
* *
37457126 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
*
37457155 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
*
37457184 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
37457213 TGGGCCTAATGGGCCATAT
1 TGGGCCTAATGGGCCATAT
37457232 GAATATAATT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 74 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:37457393 original size:13 final size:13
Alignment explanation
Indices: 37457375--37457401 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37457365 TTAAGATGTG
37457375 GCAACGGGTATAT
1 GCAACGGGTATAT
37457388 GCAACGGGTATAT
1 GCAACGGGTATAT
37457401 G
1 G
37457402 AAGGTAGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.33, T:0.22
Consensus pattern (13 bp):
GCAACGGGTATAT
Found at i:37457987 original size:17 final size:18
Alignment explanation
Indices: 37457955--37457988 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37457945 TTTAAGAAGG
37457955 GTTTTCAATGAAAACACC
1 GTTTTCAATGAAAACACC
*
37457973 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
37457989 TTCAATGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACC
Found at i:37461990 original size:36 final size:36
Alignment explanation
Indices: 37461943--37462014 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
37461933 ATGTGTTATG
37461943 ACTTATTGATATATGTGCATGATTATTCGGATGATA
1 ACTTATTGATATATGTGCATGATTATTCGGATGATA
37461979 ACTTATTGATATATGTGCATGATTATTCGGATGATA
1 ACTTATTGATATATGTGCATGATTATTCGGATGATA
37462015 TCCGGGCTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (36 bp):
ACTTATTGATATATGTGCATGATTATTCGGATGATA
Found at i:37462067 original size:40 final size:40
Alignment explanation
Indices: 37462012--37462233 Score: 270
Period size: 40 Copynumber: 5.6 Consensus size: 40
37462002 TATTCGGATG
*
37462012 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCCGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* **
37462052 ATATCCCGGCTAAGTCCCGAAGGCCTTTGCGCTAGTGACT
1 ATATCCCGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
*
37462092 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCCGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* *
37462132 ATAT-CCGAGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCCG-GCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * * ** *
37462172 ATATCCGGGCCAAGACCCGAAGGCATTTCGGCGAGTTG-CT
1 ATATCCCGGCTAAGTCCCGAAGGCATTTATGCTAG-TGACT
* *
37462212 ATAT-CCGGCTAATTCCTGAAGG
1 ATATCCCGGCTAAGTCCCGAAGG
37462234 TACTTGGGTT
Statistics
Matches: 156, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 15 0.10
40 137 0.88
41 4 0.03
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCCGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
Found at i:37462145 original size:80 final size:79
Alignment explanation
Indices: 37462012--37462233 Score: 329
Period size: 80 Copynumber: 2.8 Consensus size: 79
37462002 TATTCGGATG
* *
37462012 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCCGGCTAAGTCCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATAT-CCGGCTAAGTCCTGAAGGCA
37462077 TTTGCGCTAGTGACT
65 TTTGCGCTAGTGACT
37462092 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGAGCTAAGTCCTGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCG-GCTAAGTCCTGAAGGCA
*
37462157 TTTGTGCTAGTGACT
65 TTTGCGCTAGTGACT
* * ** * *
37462172 ATATCCGGGCCAAGACCCGAAGGCATTTCGGCGAGTTG-CTATATCCGGCTAATTCCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGACTATATCCGGCTAAGTCCTGAAGG
37462234 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
79 17 0.13
80 112 0.85
81 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGCTAAGTCCTGAAGGCAT
TTGCGCTAGTGACT
Found at i:37472331 original size:21 final size:19
Alignment explanation
Indices: 37472289--37472331 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
37472279 TTTGTTTTTC
* *
37472289 TTTCTTTTCTTCCTGCCAA
1 TTTCTATTCTTCCTACCAA
37472308 TTTCTATTCTTCTCTACACAA
1 TTTCTATTCTTC-CTAC-CAA
37472329 TTT
1 TTT
37472332 TTTTTGTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 3 0.15
21 6 0.30
ACGTcount: A:0.16, C:0.28, G:0.02, T:0.53
Consensus pattern (19 bp):
TTTCTATTCTTCCTACCAA
Found at i:37472787 original size:8 final size:8
Alignment explanation
Indices: 37472745--37472787 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
37472735 ATGTATCGGC
*
37472745 AAAAGCCG
1 AAAAGTCG
*
37472753 AAAAGCCG
1 AAAAGTCG
37472761 AAAAGTCG
1 AAAAGTCG
*
37472769 AAATGTCG
1 AAAAGTCG
*
37472777 AAAAGTTG
1 AAAAGTCG
37472785 AAA
1 AAA
37472788 GTTTGGCTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.51, C:0.14, G:0.23, T:0.12
Consensus pattern (8 bp):
AAAAGTCG
Found at i:37473053 original size:29 final size:28
Alignment explanation
Indices: 37472998--37473111 Score: 122
Period size: 29 Copynumber: 4.0 Consensus size: 28
37472988 GTGAGCATGA
* * * *
37472998 ATATGAATGTGACTGGGTCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
37473026 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
37473055 ATATATAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
37473084 ATATGAATATGATT-GGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
37473111 A
1 A
37473112 GATACAGGTA
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
27 13 0.18
28 13 0.18
29 48 0.65
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:37473097 original size:58 final size:56
Alignment explanation
Indices: 37473011--37473120 Score: 139
Period size: 58 Copynumber: 1.9 Consensus size: 56
37473001 TGAATGTGAC
* * * *
37473011 TGGGTCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TT-GGCCTAATGGGCCAGATACAGGTGATT
* * *
37473069 TGGGCCTAATGGGCCATATGAATATGATTGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGGCCTAATGGGCCAGATACAGGT
37473121 ATGTGAAATT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
56 20 0.44
57 2 0.04
58 23 0.51
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (56 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGCCTAATGGGCCAGATACAGGTGATT
Found at i:37478843 original size:47 final size:47
Alignment explanation
Indices: 37478773--37478874 Score: 186
Period size: 47 Copynumber: 2.1 Consensus size: 47
37478763 AGAGACTGAA
37478773 CAGAAAGTAAAAGTGATCTTTGAAAGTCTGAAAACAACGTTAGATCAT
1 CAGAAA-TAAAAGTGATCTTTGAAAGTCTGAAAACAACGTTAGATCAT
*
37478821 CAGAAATAAAAGTGATCTTTGAAAGTCTGAAAACAGCGTTAGATCAT
1 CAGAAATAAAAGTGATCTTTGAAAGTCTGAAAACAACGTTAGATCAT
37478868 CAGAAAT
1 CAGAAAT
37478875 CATATACGGA
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 47 0.89
48 6 0.11
ACGTcount: A:0.44, C:0.13, G:0.19, T:0.25
Consensus pattern (47 bp):
CAGAAATAAAAGTGATCTTTGAAAGTCTGAAAACAACGTTAGATCAT
Found at i:37488252 original size:30 final size:29
Alignment explanation
Indices: 37488218--37488275 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
37488208 CTTCTAAAAA
* *
37488218 TATTTACAAAAAGAGGCACCTAATTTTTAT
1 TATTTACAAAAAGA-GCAACTAAATTTTAT
*
37488248 TATTTACGAAAAGAGCAACTAAATTTTA
1 TATTTACAAAAAGAGCAACTAAATTTTA
37488276 AAAATAATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.34
Consensus pattern (29 bp):
TATTTACAAAAAGAGCAACTAAATTTTAT
Found at i:37501932 original size:46 final size:45
Alignment explanation
Indices: 37501829--37502087 Score: 213
Period size: 46 Copynumber: 5.6 Consensus size: 45
37501819 TGAGCCAATT
* * * *
37501829 TAAGACATGTGTGGGACATGCATCGGTCA-C-ATTATGAAATGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGG-CATCGA-GATGTAA--CTAGTG
* *
37501876 TAAGACATGTCTGGGACATGCATCGGCATTGAGACGATAACTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATCGAGATG-TAACTAGTG
* * *
37501922 TAAGACATGTCTGGGACAGGCATCGGCCTCGAGATGTAAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATCGAGATGTAA-CTAGTG
* * *
37501968 TAAGAGATGTTTGGGACATGCATCGGC-TACGAGATGT-GCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCAT-CGAGATGTAACTAGTG
* * * * * *
37502012 TAAGGCATGTTTGGGACATGCATCAGCA-CAAATATATGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATC-GAGATGT-A-A-CTAGTG
*
37502060 TAAGACATGCCTGGGACATGCATCGGCA
1 TAAGACATGTCTGGGACATGCATCGGCA
37502088 CGAATATATG
Statistics
Matches: 174, Mismatches: 27, Indels: 21
0.78 0.12 0.09
Matches are distributed among these distances:
43 1 0.01
44 33 0.19
45 4 0.02
46 76 0.44
47 27 0.16
48 33 0.19
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (45 bp):
TAAGACATGTCTGGGACATGCATCGGCATCGAGATGTAACTAGTG
Found at i:37502076 original size:48 final size:48
Alignment explanation
Indices: 37502005--37502113 Score: 164
Period size: 48 Copynumber: 2.3 Consensus size: 48
37501995 TACGAGATGT
* **
37502005 GCTAGTGTAAGGCATGTTTGGGACATGCATCAGCACAAATATATGAGA
1 GCTAGTGTAAGACATGCCTGGGACATGCATCAGCACAAATATATGAGA
* *
37502053 GCTAGTGTAAGACATGCCTGGGACATGCATCGGCACGAATATATGAGA
1 GCTAGTGTAAGACATGCCTGGGACATGCATCAGCACAAATATATGAGA
*
37502101 GCCAGTGTAAGAC
1 GCTAGTGTAAGAC
37502114 CATATCTAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.22
Consensus pattern (48 bp):
GCTAGTGTAAGACATGCCTGGGACATGCATCAGCACAAATATATGAGA
Found at i:37507805 original size:48 final size:48
Alignment explanation
Indices: 37507591--37507839 Score: 235
Period size: 46 Copynumber: 5.3 Consensus size: 48
37507581 CTGTTATGTA
* *
37507591 AGCCAGTGTAAGACAAGTCTGGGACATGCATCGGCCAC-G-T-TATGAA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CACGGATATATGAG
* * * * ** * *
37507637 ATGCTAGTGTCAGACATGTCTGGGACATGGATTGGCA-TTA-AGACGAG
1 A-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACGGATATATGAG
* * * * *
37507684 AGCTAGTGTAAGACATGTTTGGGACATGCATCGGC-CTTGAGATGT-A-
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-GGATATATGAG
*
37507730 AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCACGGATATATGAG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACGGATATATGAG
* * * *
37507778 AGCCAGTGTAAGACATGTCTGGTACATGCATTGGCATGGATATATGTG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACGGATATATGAG
37507826 AGCCAGTGTAAGAC
1 AGCCAGTGTAAGAC
37507840 CATATTCGGG
Statistics
Matches: 167, Mismatches: 26, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
46 72 0.43
47 37 0.22
48 58 0.35
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACGGATATATGAG
Found at i:37507871 original size:48 final size:47
Alignment explanation
Indices: 37507585--37507873 Score: 191
Period size: 46 Copynumber: 6.1 Consensus size: 47
37507575 ACACTACTGT
* * *
37507585 TATGTAAGCCAGTGTAAGACAAG-TCTGGGACATGCATCGGCCA-CG-T
1 TATGTGAGCCAGTGTAAGACATGTTC-GGGACATGCATCGG-CATCGAA
** * * * * *
37507631 TATGAAATGCTAGTGTCAGACATG-TCTGGGACATGGATTGGCAT-TAA
1 TATGTGA-GCCAGTGTAAGACATGTTC-GGGACATGCATCGGCATCGAA
* * * * * * *
37507678 GACGAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTG-A
1 TATGTGAGCCAGTGTAAGACATGTTCGGGACATGCATCGGCATCGAA
* * *
37507724 GATGTAAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCA-CGGATA
1 TATGTGAGCCAGTGTAAGACATGTTCGGGACATGCATCGGCATC-GA-A
* * * *
37507772 TATGAGAGCCAGTGTAAGACATG-TCTGGTACATGCATTGGCATGGATA
1 TATGTGAGCCAGTGTAAGACATGTTC-GGGACATGCATCGGCATCGA-A
* *
37507820 TATGTGAGCCAGTGTAAGACCATATTCGGGATATGGCATCGGCATCG-A
1 TATGTGAGCCAGTGTAAGA-CATGTTCGGGACAT-GCATCGGCATCGAA
37507868 TATGTG
1 TATGTG
37507874 TAAGATTTCC
Statistics
Matches: 194, Mismatches: 36, Indels: 24
0.76 0.14 0.09
Matches are distributed among these distances:
46 76 0.39
47 34 0.18
48 64 0.33
49 8 0.04
50 12 0.06
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (47 bp):
TATGTGAGCCAGTGTAAGACATGTTCGGGACATGCATCGGCATCGAA
Found at i:37529246 original size:68 final size:68
Alignment explanation
Indices: 37529148--37529303 Score: 240
Period size: 68 Copynumber: 2.3 Consensus size: 68
37529138 TTCGTAGTAA
* * * * *
37529148 ATGCTGGATTACAACCAATCGAATCGTGTAACAGGAGGCTCACAAAGAGTTGCAGTAGTGTGCAA
1 ATGCAGGATCACAACCGATCGAATCATGTAACAGGAGGCTCACAAAGAGCTGCAGTAGTGTGCAA
37529213 CAC
66 CAC
* *
37529216 ATGCAGGATCACAACCGATTGAATCATGTAACAGGAGGCTCACAAAGAGCTGCGGTAGTGTGCAA
1 ATGCAGGATCACAACCGATCGAATCATGTAACAGGAGGCTCACAAAGAGCTGCAGTAGTGTGCAA
37529281 CAC
66 CAC
*
37529284 ATGCAGGATCACTACCGATC
1 ATGCAGGATCACAACCGATC
37529304 AGGATGCTTG
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 79 1.00
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.19
Consensus pattern (68 bp):
ATGCAGGATCACAACCGATCGAATCATGTAACAGGAGGCTCACAAAGAGCTGCAGTAGTGTGCAA
CAC
Found at i:37533455 original size:42 final size:44
Alignment explanation
Indices: 37533354--37533458 Score: 137
Period size: 44 Copynumber: 2.4 Consensus size: 44
37533344 TGTGTTCTCA
*
37533354 TGTAAGACCACGTCTGGGATGTTGGCATCGACTTATGATTTACG
1 TGTAAGACCATGTCTGGGATGTTGGCATCGACTTATGATTTACG
* *
37533398 TGTAGGACCATGTCTGGGATGTTGGCATC-A-TATTTGATTT-CG
1 TGTAAGACCATGTCTGGGATGTTGGCATCGACT-TATGATTTACG
37533440 TGTAAGATCC-TGTCTGGGA
1 TGTAAGA-CCATGTCTGGGA
37533459 CAGTGGCATT
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 18 0.33
43 10 0.18
44 27 0.49
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGATGTTGGCATCGACTTATGATTTACG
Done.