Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 118 of 352
Found at i:37843166 original size:27 final size:27
Alignment explanation
Indices: 37843015--37843164 Score: 149
Period size: 27 Copynumber: 5.6 Consensus size: 27
37843005 TTAGTTTACC
* * *
37843015 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * *
37843042 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
* ** *
37843069 AAGTTACCCAAATATCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
37843096 AAATTACAAAAATACCCTC-AGTTTGCA
1 AAATTACTAAAATACCCTCGA-TTTGTA
*
37843123 AAATTACTAAAATACTCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
*
37843150 AAATTACTGAAATAC
1 AAATTACTAAAATAC
37843165 TCCTGTAAGA
Statistics
Matches: 99, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
26 1 0.01
27 97 0.98
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:37843481 original size:27 final size:27
Alignment explanation
Indices: 37843176--37843466 Score: 393
Period size: 27 Copynumber: 10.7 Consensus size: 27
37843166 CCTGTAAGAT
37843176 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
37843203 AGAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* *
37843230 AGAATTACTATTTTTACCCCCGATTTAC
1 AGAATTACCA-TTTTACCCTCGATTTAC
*
37843258 AGAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
37843285 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
37843312 AGAATTACCGTTTTACTCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
37843339 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
37843366 AGAATTATCGTTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* **
37843393 AGAATTACTATTTTACCCTTAATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * * *
37843420 AGAATTACCGTCTTACCCTTGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
37843447 AGAATTACCATTTTACCCTC
1 AGAATTACCATTTTACCCTC
37843467 AATGTAGAAA
Statistics
Matches: 226, Mismatches: 37, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
27 202 0.89
28 24 0.11
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:37843481 original size:54 final size:54
Alignment explanation
Indices: 37843174--37843466 Score: 469
Period size: 54 Copynumber: 5.4 Consensus size: 54
37843164 CTCCTGTAAG
* *
37843174 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTT
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
* *
37843228 ATAGAATTACTATTTTTACCCCCGATTTACAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACTA-TTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
*
37843283 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACTCTCGATTT
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
*
37843337 ATAGAATTACTATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTT
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
* ** * *
37843391 ACAGAATTACTATTTTACCCTTAATTTACAGAATTACCGTCTTACCCTTGATTT
1 ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
*
37843445 ATAGAATTACCATTTTACCCTC
1 ATAGAATTACTATTTTACCCTC
37843467 AATGTAGAAA
Statistics
Matches: 220, Mismatches: 18, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
54 169 0.77
55 51 0.23
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
ATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTT
Found at i:37843490 original size:27 final size:27
Alignment explanation
Indices: 37843460--37843544 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
37843450 ATTACCATTT
* * *
37843460 TACCCTCAATGTAGAAAATTACTAAAA
1 TACCCTCAATCTACAAAATTACCAAAA
*** *
37843487 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAATCTACAAAATTACCAAAA
* *
37843514 TACCCTCAATCAATAAAATTACCAAAA
1 TACCCTCAATCTACAAAATTACCAAAA
37843541 TACC
1 TACC
37843545 ATTGGTTTGT
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.46, C:0.24, G:0.05, T:0.26
Consensus pattern (27 bp):
TACCCTCAATCTACAAAATTACCAAAA
Found at i:37843491 original size:81 final size:81
Alignment explanation
Indices: 37843176--37843510 Score: 400
Period size: 81 Copynumber: 4.1 Consensus size: 81
37843166 CCTGTAAGAT
* * * *
37843176 AGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACTAT
1 AGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTA-
**
37843241 TTTTACCCCCGATTTAC
65 TTTTACCCTTGATTTAC
* **
37843258 AGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGT
1 AGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTAT
* * *
37843323 TTTACTCTCGATTTAT
66 TTTACCCTTGATTTAC
* * * *
37843339 AGAATTACTATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACTAT
1 AGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTAT
*
37843404 TTTACCCTTAATTTAC
66 TTTACCCTTGATTTAC
* * * * * * * *
37843420 AGAATTACCGTCTTACCCTTGATTTATAGAATTACCATTTTACCCTCAATGTAGAAAATTACTAA
1 AGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTAT
** *
37843485 AATACCCTTGGTTTAC
66 TTTACCCTTGATTTAC
*
37843501 AAAATTACCA
1 AGAATTACCA
37843511 AAATACCCTC
Statistics
Matches: 214, Mismatches: 39, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
81 157 0.73
82 57 0.27
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (81 bp):
AGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTAT
TTTACCCTTGATTTAC
Found at i:37843507 original size:54 final size:54
Alignment explanation
Indices: 37843433--37843574 Score: 167
Period size: 54 Copynumber: 2.6 Consensus size: 54
37843423 ATTACCGTCT
* * *** ** *
37843433 TACCCTTGATTTATAGAATTACCATTTTACCCTCAATGTAGAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAATACCCTCAATCAAGAAAATTACCAAAA
* *
37843487 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATCAATAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAATACCCTCAATCAAGAAAATTACCAAAA
* *
37843541 TACCATTGGTTTGTAAAATTACCAAAATAACCCT
1 TACCCTTGGTTTATAAAATTACCAAAAT-ACCCT
37843575 GCTTTGTGTA
Statistics
Matches: 74, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
54 69 0.93
55 5 0.07
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (54 bp):
TACCCTTGGTTTATAAAATTACCAAAATACCCTCAATCAAGAAAATTACCAAAA
Found at i:37843557 original size:27 final size:27
Alignment explanation
Indices: 37843474--37843602 Score: 116
Period size: 27 Copynumber: 4.8 Consensus size: 27
37843464 CTCAATGTAG
* *
37843474 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTAT
*** **
37843501 AAAATTACCAAAATACCCTCAATCAAT
1 AAAATTACCAAAATACCCTTGGTTTAT
* *
37843528 AAAATTACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTAT
* *
37843555 AAAATTACCAAAATAACCC-TGCTTTGT
1 AAAATTACCAAAAT-ACCCTTGGTTTAT
** *
37843582 GTAATTACCGAAATACCCTTG
1 AAAATTACCAAAATACCCTTG
37843603 TAGGGTAGAA
Statistics
Matches: 81, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 4 0.05
27 74 0.91
28 3 0.04
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTAT
Found at i:37843614 original size:27 final size:27
Alignment explanation
Indices: 37843584--37843941 Score: 520
Period size: 27 Copynumber: 13.3 Consensus size: 27
37843574 TGCTTTGTGT
37843584 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
37843611 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** *
37843638 AATTATTGAAATACCCCTT-TCGGGTAG
1 AATTACCGAAATA-CCCTTGTAGGGTAG
* * *
37843665 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
37843692 AATTACCGAAATACCCCTGTAGAGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
37843719 AATGACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
37843746 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
37843773 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
37843800 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
37843827 AATTACCGAAATACCCTTGTAGCGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
37843854 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
37843881 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
37843908 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
37843935 AATTACC
1 AATTACC
37843942 ATTTTGCCCC
Statistics
Matches: 297, Mismatches: 32, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 4 0.01
27 288 0.97
28 5 0.02
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:37844376 original size:25 final size:28
Alignment explanation
Indices: 37844345--37844422 Score: 90
Period size: 31 Copynumber: 2.8 Consensus size: 28
37844335 GCATTCACAT
37844345 TCTGATTTTGATTCTGTTACCTGATACC
1 TCTGATTTTGATTCTGTTACCTGATACC
37844373 GATTCTGATTTTGATTCTGTTACCTGATA--
1 ---TCTGATTTTGATTCTGTTACCTGATACC
* *
37844402 -CTGATTCTGATTCTGTCACCT
1 TCTGATTTTGATTCTGTTACCT
37844423 AATTCTGATT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
25 19 0.42
31 26 0.58
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (28 bp):
TCTGATTTTGATTCTGTTACCTGATACC
Found at i:37844381 original size:31 final size:31
Alignment explanation
Indices: 37844343--37844413 Score: 133
Period size: 31 Copynumber: 2.3 Consensus size: 31
37844333 TTGCATTCAC
37844343 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
*
37844374 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
37844405 ATTCTGATT
1 ATTCTGATT
37844414 CTGTCACCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACCG
Found at i:37844387 original size:6 final size:6
Alignment explanation
Indices: 37844343--37844455 Score: 63
Period size: 6 Copynumber: 18.3 Consensus size: 6
37844333 TTGCATTCAC
* * * *
37844343 ATTCTG ATTTTG ATTCTG -TTACCTG ATACCG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
37844392 -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ACTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
37844442 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
37844456 AATGTTTCTT
Statistics
Matches: 80, Mismatches: 16, Indels: 22
0.68 0.14 0.19
Matches are distributed among these distances:
5 6 0.08
6 62 0.77
7 9 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:37844430 original size:25 final size:25
Alignment explanation
Indices: 37844374--37844441 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
37844364 CCTGATACCG
* * *
37844374 ATTCTGATTTTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTA
*
37844399 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
37844424 ATTCTGATTCTGACTCTG
1 ATTCTGATTCTGATTCTG
37844442 ATTCTAGTTC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:37853747 original size:16 final size:18
Alignment explanation
Indices: 37853726--37853761 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
37853716 ATTTGGGTCC
37853726 TGTGGG-CCACA-GGGCA
1 TGTGGGCCCACATGGGCA
37853742 TGTGGGCCCACATGGGCA
1 TGTGGGCCCACATGGGCA
37853760 TG
1 TG
37853762 CAGCATGGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.17, C:0.25, G:0.42, T:0.17
Consensus pattern (18 bp):
TGTGGGCCCACATGGGCA
Found at i:37855597 original size:29 final size:28
Alignment explanation
Indices: 37855548--37855647 Score: 94
Period size: 29 Copynumber: 3.5 Consensus size: 28
37855538 TACCTGTATT
* *
37855548 TGGCCCATTAAGCCC-AATCACATTCTTA
1 TGGCCCATTAGGCCCAAATCACATT-ATA
* ** *
37855576 TGGTCCATTAGGTGCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACAT-TATA
37855605 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACA-TTATA
**
37855634 TGGCCTGTTAGGCC
1 TGGCCCATTAGGCC
37855648 TAGTCACATT
Statistics
Matches: 57, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
28 11 0.19
29 44 0.77
30 2 0.04
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCACATTATA
Found at i:37858118 original size:26 final size:27
Alignment explanation
Indices: 37858054--37858110 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
37858044 ACCTCAAATT
*
37858054 GATAAAATGACTATTATGCCCCTATGG
1 GATAAAATGACTATTATGCCCCTATGA
* *
37858081 GGTAAAATGACTATTATGCCCTTATGA
1 GATAAAATGACTATTATGCCCCTATGA
37858108 GAT
1 GAT
37858111 GTATGACTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (27 bp):
GATAAAATGACTATTATGCCCCTATGA
Found at i:37860433 original size:34 final size:34
Alignment explanation
Indices: 37860350--37860433 Score: 107
Period size: 34 Copynumber: 2.5 Consensus size: 34
37860340 CTTTTGTACA
*
37860350 GATCTGTTATAAGCATATTAATTGCTTACATATT
1 GATCTGTTATAAGCATATTAATTGCTTACATATC
* * *
37860384 GATTTGTTATTAGCATATTAATTGC-TACCGTATC
1 GATCTGTTATAAGCATATTAATTGCTTA-CATATC
*
37860418 GATCTATTATAAGCAT
1 GATCTGTTATAAGCAT
37860434 GCCATATTGC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
33 2 0.05
34 40 0.95
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (34 bp):
GATCTGTTATAAGCATATTAATTGCTTACATATC
Found at i:37861182 original size:7 final size:7
Alignment explanation
Indices: 37861172--37861211 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
37861162 ATATATTTAT
37861172 TATTTGA
1 TATTTGA
37861179 TATTTGA
1 TATTTGA
37861186 TATTTGA
1 TATTTGA
37861193 TATTTGA
1 TATTTGA
37861200 TATTTGA
1 TATTTGA
37861207 TATTT
1 TATTT
37861212 TTATTTAGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTGA
Found at i:37861190 original size:21 final size:21
Alignment explanation
Indices: 37861164--37861217 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
37861154 GTAAAATTAT
37861164 ATATTTATTATTTGATATTTG
1 ATATTTATTATTTGATATTTG
37861185 ATATTTGA-TATTTGATATTTG
1 ATATTT-ATTATTTGATATTTG
37861206 ATATTT-TTATTT
1 ATATTTATTATTT
37861218 AGAGACTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.16
21 25 0.81
22 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (21 bp):
ATATTTATTATTTGATATTTG
Found at i:37861841 original size:370 final size:366
Alignment explanation
Indices: 37861193--37861855 Score: 1056
Period size: 370 Copynumber: 1.8 Consensus size: 366
37861183 TGATATTTGA
* * **
37861193 TATTTGATATTTGATATTTTTATTTAGAGACTGTATTACTTTATCTTTGAACTATGACATGAGAC
1 TATTTGATATTTGATATTTTTATTCAAAGACTGTATTACTCGATCTTTGAACTATGACATGAGAC
* *
37861258 TTAGGTTTTGGGTTTTTATAGCAAGCATGACAGTTAATTTGATTTTACGACATTGAATATATATA
66 TTAAGTTTTGGGTTTTTATAGCAAGCATGACAGTTAATTTGACTTTACGACATTGAATATATATA
* ** *
37861323 TCAATTAATTATGCATGAACTTTGAATTTATTAAAATTATAAGTAGATATCACTTTTATGCTACT
131 TCAATTAATTATGCATGAAATTCAAATTTAATAAAATTATAAGTAGATATCACTTTTATGCTACT
*
37861388 AGATTATAGATGAATTCTGAATAATAAATAAACGAGAAAATTATCTAAGTTCTTAAAAGTAGTCT
196 AGATTATAGATGAATTCTGAATAATAAATAAACGAGAAAATTATCTAAGTTCTTAAAAGTAATCT
*
37861453 CCAATACAAAGAAGATGATAACTTAATCGGTTTTGAGGATTCATACATGACATTCAGAGGGTCTC
261 CCAATACAAAGAAGATGATAACTTAACCGGTTTTGAGGATTCATACATGACATTCAGAGGGTCTC
37861518 AACTTGGATTTATATATATTTTTATAAAATTATAGATTTAT
326 AACTTGGATTTATATATATTTTTATAAAATTATAGATTTAT
* * * *
37861559 TATTTTATATTTTTATATTTTTTATTCAAAGACTGTGTTACTCGATCTTTGAACTATGACATGGG
1 TATTTGATA-TTTGATA-TTTTTATTCAAAGACTGTATTACTCGATCTTTGAACTATGACATGAG
* * ** *
37861624 GCTTAAGTTTTGGGTTTTTATAGCACGCATGGTAGTTAATTTGACTTTACGATATTGAAATATAT
64 ACTTAAGTTTTGGGTTTTTATAGCAAGCATGACAGTTAATTTGACTTTACGACATTG-AATATAT
* *
37861689 ATATCAATTAATTATGCATGAAATTCAAATTTTAATAAAATTATAAGTAGATATCACTTTTCTGT
128 ATATCAATTAATTATGCATGAAATTCAAA-TTTAATAAAATTATAAGTAGATATCACTTTTATGC
* * *
37861754 TGCTAGGTTATAGATGAATTCTGAATAATAAATAAACGGGAAAATTATCTAAGTTCTTAAAAGTA
192 TACTAGATTATAGATGAATTCTGAATAATAAATAAACGAGAAAATTATCTAAGTTCTTAAAAGTA
37861819 ATCTCCAATACAAAGAAGATGATAACTTAACCGGTTT
257 ATCTCCAATACAAAGAAGATGATAACTTAACCGGTTT
37861856 GGTTTTACTC
Statistics
Matches: 267, Mismatches: 26, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
366 8 0.03
367 6 0.02
368 91 0.34
369 33 0.12
370 129 0.48
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (366 bp):
TATTTGATATTTGATATTTTTATTCAAAGACTGTATTACTCGATCTTTGAACTATGACATGAGAC
TTAAGTTTTGGGTTTTTATAGCAAGCATGACAGTTAATTTGACTTTACGACATTGAATATATATA
TCAATTAATTATGCATGAAATTCAAATTTAATAAAATTATAAGTAGATATCACTTTTATGCTACT
AGATTATAGATGAATTCTGAATAATAAATAAACGAGAAAATTATCTAAGTTCTTAAAAGTAATCT
CCAATACAAAGAAGATGATAACTTAACCGGTTTTGAGGATTCATACATGACATTCAGAGGGTCTC
AACTTGGATTTATATATATTTTTATAAAATTATAGATTTAT
Found at i:37863337 original size:38 final size:38
Alignment explanation
Indices: 37863293--37863391 Score: 126
Period size: 38 Copynumber: 2.6 Consensus size: 38
37863283 GAAATCCTTG
* *
37863293 TTATAATTATTGTAATTATAATTTACGATCGAATATTA
1 TTATAATTATTGTAATTATAATTTACGATCAAACATTA
* * * **
37863331 TTATAATGATTGTAAGTGTAATTTTTGATCAAACATTA
1 TTATAATTATTGTAATTATAATTTACGATCAAACATTA
*
37863369 TTATAATTATGGTAATTATAATT
1 TTATAATTATTGTAATTATAATT
37863392 ACTACATTCG
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.47
Consensus pattern (38 bp):
TTATAATTATTGTAATTATAATTTACGATCAAACATTA
Found at i:37865334 original size:41 final size:41
Alignment explanation
Indices: 37865276--37865380 Score: 158
Period size: 41 Copynumber: 2.6 Consensus size: 41
37865266 CCAATAACAC
**
37865276 ACTAGT-TTGTGGACAAGCCACCAGTAATTGTAGATAAACT
1 ACTAGTATTGTGGACAAGCCACCAGTAATTACAGATAAACT
* * *
37865316 TCTAGTATTGTGGTCAAGCCACTAGTAATTACAGATAAACT
1 ACTAGTATTGTGGACAAGCCACCAGTAATTACAGATAAACT
37865357 ACTAGTATTGTGGACAAGCCACCA
1 ACTAGTATTGTGGACAAGCCACCA
37865381 ATGTTGCAGA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 5 0.09
41 51 0.91
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (41 bp):
ACTAGTATTGTGGACAAGCCACCAGTAATTACAGATAAACT
Found at i:37876338 original size:30 final size:30
Alignment explanation
Indices: 37876302--37876361 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37876292 TTCCCGAGCC
*
37876302 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
37876332 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
37876362 CATATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:37877810 original size:21 final size:20
Alignment explanation
Indices: 37877772--37877810 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37877762 CTGTTCTGAC
*
37877772 TTTAAAAATTCATCATAAAT
1 TTTAAAAATTAATCATAAAT
*
37877792 TTTAAAAATATAATTATAA
1 TTTAAAAAT-TAATCATAA
37877811 GTCATAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (20 bp):
TTTAAAAATTAATCATAAAT
Found at i:37883847 original size:30 final size:30
Alignment explanation
Indices: 37883811--37883870 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
37883801 TTCCCGAGCC
* *
37883811 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
* *
37883841 TAGGGGCAAAAATATAATTTTGCCAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
37883871 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATATAATTATGCAAAAGTT
Found at i:37889202 original size:36 final size:36
Alignment explanation
Indices: 37889155--37889226 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
37889145 TTTACTGCTT
37889155 CCCTAGGGGTTTTAATTAAGAAAGAAATTTTGATTA
1 CCCTAGGGGTTTTAATTAAGAAAGAAATTTTGATTA
37889191 CCCTAGGGGTTTTAATTAAGAAAGAAATTTTGATTA
1 CCCTAGGGGTTTTAATTAAGAAAGAAATTTTGATTA
37889227 ATTCAACTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.36
Consensus pattern (36 bp):
CCCTAGGGGTTTTAATTAAGAAAGAAATTTTGATTA
Found at i:37889444 original size:17 final size:17
Alignment explanation
Indices: 37889422--37889454 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37889412 TCTCTTTGCT
37889422 TTAGTTTAATTAATTAA
1 TTAGTTTAATTAATTAA
*
37889439 TTAGTTTAGTTAATTA
1 TTAGTTTAATTAATTA
37889455 GTTTAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (17 bp):
TTAGTTTAATTAATTAA
Found at i:37889453 original size:13 final size:13
Alignment explanation
Indices: 37889435--37889459 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37889425 GTTTAATTAA
37889435 TTAATTAGTTTAG
1 TTAATTAGTTTAG
37889448 TTAATTAGTTTA
1 TTAATTAGTTTA
37889460 ATAAACAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTAATTAGTTTAG
Found at i:37892898 original size:15 final size:15
Alignment explanation
Indices: 37892867--37892895 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
37892857 AACTAAAGCG
37892867 AACATAGACCAAATT
1 AACATAGACCAAATT
37892882 AACATA-ACCAAATT
1 AACATAGACCAAATT
37892896 TAAAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.21, G:0.03, T:0.21
Consensus pattern (15 bp):
AACATAGACCAAATT
Found at i:37897735 original size:27 final size:27
Alignment explanation
Indices: 37897705--37897788 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
37897695 CCAAAGTACT
* *
37897705 CTCGATTTATAGAATTATCGTTTTACC
1 CTCGATTTACAAAATTATCGTTTTACC
* *
37897732 CTCGATTTACAAAATTACCATTTTACC
1 CTCGATTTACAAAATTATCGTTTTACC
37897759 CTC-AGTTTACAAAATTATCGTTTTACC
1 CTCGA-TTTACAAAATTATCGTTTTACC
37897786 CTC
1 CTC
37897789 AATTGTGAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
26 1 0.02
27 49 0.98
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (27 bp):
CTCGATTTACAAAATTATCGTTTTACC
Found at i:37897874 original size:27 final size:27
Alignment explanation
Indices: 37897844--37897921 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
37897834 ATGCCACTAG
37897844 TTTGAGAAATTACCGAAATACCCTC-AA
1 TTTGA-AAATTACCGAAATACCCTCTAA
*
37897871 TTTGTAAAATTACCAAAATACCC-CTAA
1 TTTG-AAAATTACCGAAATACCCTCTAA
* *
37897898 TTTACAAAATTACAGAAATACCCT
1 TTT-GAAAATTACCGAAATACCCT
37897922 TAACTTTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
26 1 0.02
27 41 0.95
28 1 0.02
ACGTcount: A:0.44, C:0.22, G:0.06, T:0.28
Consensus pattern (27 bp):
TTTGAAAATTACCGAAATACCCTCTAA
Found at i:37898939 original size:25 final size:24
Alignment explanation
Indices: 37898905--37898972 Score: 100
Period size: 25 Copynumber: 2.8 Consensus size: 24
37898895 AGGAAGTGCT
*
37898905 AAAAGGGCTCTGCCCCAGTTTACTG
1 AAAAGGGCTCTGCCCCAGTTTA-TC
37898930 AAAAGGGCTCTGCCCCAGTTTATC
1 AAAAGGGCTCTGCCCCAGTTTATC
*
37898954 AGAAAGGGCTTTGCCCCAG
1 A-AAAGGGCTCTGCCCCAG
37898973 GTATTAAAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
24 2 0.05
25 38 0.95
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (24 bp):
AAAAGGGCTCTGCCCCAGTTTATC
Found at i:37899169 original size:42 final size:42
Alignment explanation
Indices: 37899122--37899213 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
37899112 TAGTCTCCCC
* ** *
37899122 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
37899164 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
37899206 AAATGGGC
1 AAATGGGC
37899214 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:37904155 original size:15 final size:15
Alignment explanation
Indices: 37904124--37904152 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
37904114 AACTAAAGCG
37904124 AACATAGACCAAATT
1 AACATAGACCAAATT
37904139 AACATA-ACCAAATT
1 AACATAGACCAAATT
37904153 TAAAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.21, G:0.03, T:0.21
Consensus pattern (15 bp):
AACATAGACCAAATT
Found at i:37904800 original size:16 final size:16
Alignment explanation
Indices: 37904779--37904812 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
37904769 CGTATAATAT
37904779 CATTATTAGTATCACA
1 CATTATTAGTATCACA
37904795 CATTATTAGTATCACA
1 CATTATTAGTATCACA
37904811 CA
1 CA
37904813 CAATTTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (16 bp):
CATTATTAGTATCACA
Found at i:37907965 original size:16 final size:16
Alignment explanation
Indices: 37907946--37907976 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37907936 CTTCTTCACT
37907946 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
37907962 TACTTACTTACTTAA
1 TACTCACTTACTTAA
37907977 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:37907982 original size:20 final size:20
Alignment explanation
Indices: 37907943--37907982 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
37907933 AAACTTCTTC
* *
37907943 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
37907963 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
37907983 TTATTAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:37908093 original size:23 final size:24
Alignment explanation
Indices: 37908055--37908099 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
37908045 TTTGCTCTTC
*
37908055 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
37908079 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
37908100 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:37908295 original size:53 final size:54
Alignment explanation
Indices: 37908207--37908422 Score: 249
Period size: 55 Copynumber: 4.0 Consensus size: 54
37908197 TACGTGGTAT
* * *
37908207 CCTTTTGAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* * *
37908261 CCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTG
* * * * *
37908314 CCTTATAGTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* **
37908369 CCTTA-GAAACCTTACCAATTGCCATGCCTTGGCATGAACTTACATGGTATCCTT
1 CCTTATGAAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
37908423 AAACCCTAAT
Statistics
Matches: 135, Mismatches: 21, Indels: 11
0.81 0.13 0.07
Matches are distributed among these distances:
52 2 0.01
53 47 0.35
54 14 0.10
55 70 0.52
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
Found at i:37908359 original size:108 final size:110
Alignment explanation
Indices: 37908215--37908415 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
37908205 ATCCTTTTGA
* *
37908215 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
**
37908278 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGAACTTACATGGGACCTTTGCCTTATAGT
* * *
37908323 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
37908388 TGCCATGCCTTGGCATGAACTTACATGG
66 TGCCATGCCTTGGCATGAACTTACATGG
37908416 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.59
109 7 0.08
110 26 0.31
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGAACTTACATGGGACCTTTGCCTTATAGT
Found at i:37917522 original size:79 final size:80
Alignment explanation
Indices: 37917421--37917603 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
37917411 TACTCGTTCA
* * *
37917421 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATACCTTC-AGATCTTAACCCGG
* * *
37917484 ATTTAGTGAC-TCGCACC
64 ATATAGTCACTTAGCA-C
* **
37917501 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCAGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATACCTTCAGATCTTAACCCGGAT
37917565 ATAGTCACTTAGCAC
66 ATAGTCACTTAGCAC
*
37917580 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
37917604 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 59 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATACCTTCAGATCTTAACCCGGAT
ATAGTCACTTAGCAC
Found at i:37917603 original size:40 final size:40
Alignment explanation
Indices: 37917419--37917603 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
37917409 GCTACTCGTT
* *
37917419 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
37917459 CAAATACCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
37917499 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
37917538 CAAATGCCTTC-AGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37917579 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37917604 CATCATTCGA
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 31 0.26
40 78 0.64
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37927465 original size:49 final size:49
Alignment explanation
Indices: 37927307--37927474 Score: 188
Period size: 49 Copynumber: 3.5 Consensus size: 49
37927297 ATGAATTGCC
* *
37927307 GATGCCATGTCCTAGACATGGTCTTATACTGGCTCTCATATATGCGTGCT
1 GATGCCATGTCCCAGACAT-GTCTTATACTGGATCTCATATATGCGTGCT
* * * * * *
37927357 GATG-CATGTCCCAGACATGTCTTACACT--AGCACA-A-CT-CTTGGCC
1 GATGCCATGTCCCAGACATGTCTTATACTGGATCTCATATATGCGT-GCT
37927401 GATGCCATGTCCCAGACATGGTCTTATACTGGATCTCATATATGCGTGCT
1 GATGCCATGTCCCAGACAT-GTCTTATACTGGATCTCATATATGCGTGCT
37927451 GATG-CATGTCCCAGACATGTCTTA
1 GATGCCATGTCCCAGACATGTCTTA
37927475 CACTAGCACA
Statistics
Matches: 96, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
43 2 0.02
44 7 0.07
45 15 0.16
46 12 0.12
48 19 0.20
49 28 0.29
50 11 0.11
51 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGTCTTATACTGGATCTCATATATGCGTGCT
Found at i:37927465 original size:94 final size:94
Alignment explanation
Indices: 37927304--37927518 Score: 380
Period size: 94 Copynumber: 2.3 Consensus size: 94
37927294 GGAATGAATT
* *
37927304 GCCGATGCCATGTCCTAGACATGGTCTTATACTGGCTCTCATATATGCGTGCTGATGCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTATACTGGATCTCATATATGCGTGCTGATGCATGTCCC
37927369 AGACATGTCTTACACTAGCACAACTCTTG
66 AGACATGTCTTACACTAGCACAACTCTTG
37927398 GCCGATGCCATGTCCCAGACATGGTCTTATACTGGATCTCATATATGCGTGCTGATGCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTATACTGGATCTCATATATGCGTGCTGATGCATGTCCC
*
37927463 AGACATGTCTTACACTAGCACAATTCTTG
66 AGACATGTCTTACACTAGCACAACTCTTG
*
37927492 GCCGATG-CGTGTCCCAGACAT-GTCTTA
1 GCCGATGCCATGTCCCAGACATGGTCTTA
37927519 CATTGGCTAT
Statistics
Matches: 117, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
92 6 0.05
93 13 0.11
94 98 0.84
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (94 bp):
GCCGATGCCATGTCCCAGACATGGTCTTATACTGGATCTCATATATGCGTGCTGATGCATGTCCC
AGACATGTCTTACACTAGCACAACTCTTG
Found at i:37927531 original size:94 final size:95
Alignment explanation
Indices: 37927304--37927669 Score: 378
Period size: 94 Copynumber: 3.9 Consensus size: 95
37927294 GGAATGAATT
* *
37927304 GCCGATGCCATGTCCTAGACATGGTCTTATACTGGC-TCTCATATATGCGTGCTGATGCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCATCTCATATATGCGTGCTGATGCATGTCC
*
37927368 CAGACATGTCTTACACTAGCACAACTCTTG
66 CAGACATGTCTTACACTAGCACAATTCTTG
*
37927398 GCCGATGCCATGTCCCAGACATGGTCTTATACTGG-ATCTCATATATGCGTGCTGATGCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCATCTCATATATGCGTGCTGATGCATGTCC
37927462 CAGACATGTCTTACACTAGCACAATTCTTG
66 CAGACATGTCTTACACTAGCACAATTCTTG
* * * * * **
37927492 GCCGATG-CGTGTCCCAGACAT-GTCTTACATTGGCTATCTC-TGT-CGAG-GCCAATGCATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-ATCTCATATATGCGTGCTGATGCATGTC
* * * **
37927552 CCAGACATGTCTTACTCTGGCACTCATAATATG
65 CCAGACATGTCTTACACTAGCAC-AATTCT-TG
* * * * * * *
37927585 GCTGAAG-CATGTCCCAGACAT-GTCTTACACTAGC-CCTCATCTA-G-ATGCCGATGCCATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCATCTCATATATGCGTGCTGATG-CATGTC
* *
37927645 CCAGACATGGCCTTACACTGGCACA
65 CCAGACAT-GTCTTACACTAGCACA
37927670 CAAATCACCC
Statistics
Matches: 235, Mismatches: 27, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
91 35 0.15
92 24 0.10
93 60 0.26
94 116 0.49
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCATCTCATATATGCGTGCTGATGCATGTCC
CAGACATGTCTTACACTAGCACAATTCTTG
Found at i:37931587 original size:21 final size:22
Alignment explanation
Indices: 37931551--37931591 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
37931541 CCTAACATTT
37931551 CATTATTTCACACATTTTACTA
1 CATTATTTCACACATTTTACTA
*
37931573 CATTATTT-TCACATTTTAC
1 CATTATTTCACACATTTTAC
37931592 AAATAAATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (22 bp):
CATTATTTCACACATTTTACTA
Found at i:37949352 original size:40 final size:40
Alignment explanation
Indices: 37949282--37949419 Score: 181
Period size: 40 Copynumber: 3.5 Consensus size: 40
37949272 AAGCCAAGTA
* * * *
37949282 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCAGATATAG-TAACTCGCACAAATG
* *
37949321 CCTTCGGGACATAGCCCAGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
*
37949361 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
*
37949401 CCATCGGGACTTAGCCCAG
1 CCTTCGGGACTTAGCCCAG
37949420 TTATCATCCA
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 12 0.14
40 74 0.86
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
Found at i:37956772 original size:40 final size:40
Alignment explanation
Indices: 37956710--37956927 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
37956700 AAGCCAAGTA
* * * *
37956710 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
* *
37956749 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
*
37956789 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
37956829 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCA-GTAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACG-AATG
* * * * *
37956869 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
37956909 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
37956928 TTATCATCCA
Statistics
Matches: 159, Mismatches: 14, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 15 0.09
40 143 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:37964926 original size:27 final size:27
Alignment explanation
Indices: 37964657--37964952 Score: 242
Period size: 27 Copynumber: 11.0 Consensus size: 27
37964647 ATACCCCCAG
* * **
37964657 TTTGTAAAATTATCGAAGTACCC-CCA
1 TTTGTAAAATTACCGAAATACCCTTGA
* * *
37964683 GTTTGTAAAATTACCGGAGTACCCCT-A
1 -TTTGTAAAATTACCGAAATACCCTTGA
* **
37964710 GTTTGTAAAATTACCAAAATACCCTCAA
1 -TTTGTAAAATTACCGAAATACCCTTGA
* * * **
37964738 TTTTTAAAATTACCAAAACACCCTCAA
1 TTTGTAAAATTACCGAAATACCCTTGA
*
37964765 TTTGTAAAATTATCGAAATA-CCTTCGA
1 TTTGTAAAATTACCGAAATACCCTT-GA
37964792 TTTGTAAAATTACCGAAATACCCTTGA
1 TTTGTAAAATTACCGAAATACCCTTGA
* * *
37964819 CTTGTAAAATTACTGAAATACCCTCGA
1 TTTGTAAAATTACCGAAATACCCTTGA
* * **
37964846 TTTGTAAAATTACTGAAACACCCCCGA
1 TTTGTAAAATTACCGAAATACCCTTGA
**
37964873 TTTGTAAAATTATTGAAATACCCTTG-
1 TTTGTAAAATTACCGAAATACCCTTGA
* *
37964899 TAGTGTAAAATTACCGAAATACCATTG-
1 T-TTGTAAAATTACCGAAATACCCTTGA
* * *
37964926 TAGTGTAAAATGACCGACATACCCTTG
1 T-TTGTAAAATTACCGAAATACCCTTG
37964953 TAGGGTAAAA
Statistics
Matches: 230, Mismatches: 34, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.02
27 221 0.96
28 5 0.02
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
TTTGTAAAATTACCGAAATACCCTTGA
Found at i:37966943 original size:132 final size:132
Alignment explanation
Indices: 37966704--37966970 Score: 444
Period size: 132 Copynumber: 2.0 Consensus size: 132
37966694 TAGCATAACC
*
37966704 TCAACAATTCCAACTCTAGTGTCATATTATACTTACTCGTGCATTATGTTCTAGTTCTTTTACAT
1 TCAACAATTCCAACTCTAGTGTCATATTATACTTACTCGTGCATTATGTTCTAGTTCATTTACAT
* * *
37966769 GGTAAACATATTGACTTTTAAGTATATATAACAAAACACATGTAATTACATAATGTTCATGCATA
66 GGTAAACATATTGACTTTTAAGCATATATAACAAAACACATGTAATTACATAACGTTAATGCATA
37966834 CA
131 CA
* *
37966836 TCAACAGTTCCAACTCTAGTGTCATATTATACTTACTCGTGCATTATTTTCTAGTTCATTTACAT
1 TCAACAATTCCAACTCTAGTGTCATATTATACTTACTCGTGCATTATGTTCTAGTTCATTTACAT
* * *
37966901 TGTAAATATATTGACTTTTAAGCATATATAACAAAACTCATGTAATTACATAACGTTAATGCATA
66 GGTAAACATATTGACTTTTAAGCATATATAACAAAACACATGTAATTACATAACGTTAATGCATA
*
37966966 TA
131 CA
37966968 TCA
1 TCA
37966971 GAATACTCAA
Statistics
Matches: 125, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 125 1.00
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (132 bp):
TCAACAATTCCAACTCTAGTGTCATATTATACTTACTCGTGCATTATGTTCTAGTTCATTTACAT
GGTAAACATATTGACTTTTAAGCATATATAACAAAACACATGTAATTACATAACGTTAATGCATA
CA
Found at i:37968732 original size:25 final size:25
Alignment explanation
Indices: 37968654--37968732 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
37968644 TCATTAGAGT
37968654 TACCTATTTATAGCTCGTAAGAGCA
1 TACCTATTTATAGCTCGTAAGAGCA
*
37968679 TA-CTGATTTATAGCTCGTAAAAGCA
1 TACCT-ATTTATAGCTCGTAAGAGCA
**
37968704 TACCTATTTATAGCTCGCGAGAGCA
1 TACCTATTTATAGCTCGTAAGAGCA
37968729 TACC
1 TACC
37968733 GATCTTCATC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
24 2 0.04
25 44 0.92
26 2 0.04
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (25 bp):
TACCTATTTATAGCTCGTAAGAGCA
Found at i:37968790 original size:25 final size:25
Alignment explanation
Indices: 37968724--37968781 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
37968714 TAGCTCGCGA
*
37968724 GAGCATACCGA-TCTTCATCTCAAAT
1 GAGCATACCGATTC-ACATCTCAAAT
*
37968749 GAGCATACCGATTCACATCTCATAT
1 GAGCATACCGATTCACATCTCAAAT
37968774 GAGCATAC
1 GAGCATAC
37968782 ATGTACACAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 28 0.93
26 2 0.07
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.26
Consensus pattern (25 bp):
GAGCATACCGATTCACATCTCAAAT
Found at i:37970432 original size:47 final size:48
Alignment explanation
Indices: 37970362--37970537 Score: 187
Period size: 51 Copynumber: 3.5 Consensus size: 48
37970352 ACTAGTGACT
*
37970362 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG-T-GATCTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGATAGCT-TTGGTCA
* *
37970409 GAAGTGTGGTACTATGTGGAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTG---AG-AAGATAGCTTTGGTCA
* *
37970461 CATGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTGAGT-A
1 CAAGTGTGGTACTATGTGAAGGCCAC-TT-TG-AGAAGATAGCTTTG-GTCA
* *
37970512 CAAGGGTGGTACTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
37970538 CAGGTATCAG
Statistics
Matches: 110, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
47 28 0.25
50 2 0.02
51 38 0.35
52 36 0.33
53 4 0.04
54 2 0.02
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.28
Consensus pattern (48 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGATAGCTTTGGTCA
Found at i:37970525 original size:51 final size:51
Alignment explanation
Indices: 37970362--37970537 Score: 211
Period size: 52 Copynumber: 3.5 Consensus size: 51
37970352 ACTAGTGACT
*
37970362 CAAGTGTGGTACTATGTGAAGGCCAC-TT-TG-AGAA-GT-GATCTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCT-TTGGTCA
* * * *
37970409 GAAGTGTGGTACTATGTGGAGGCCACTTTGTAAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTAGCTTTGGTCA
*
37970461 CATGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTGAGT-A
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTG-GTCA
* *
37970512 CAAGGGTGGTACTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
37970538 CAGGTATCAG
Statistics
Matches: 109, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
47 24 0.22
48 2 0.02
49 1 0.01
50 2 0.02
51 37 0.34
52 41 0.38
53 2 0.02
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTGGTCA
Found at i:37974148 original size:42 final size:43
Alignment explanation
Indices: 37974034--37974191 Score: 110
Period size: 43 Copynumber: 3.7 Consensus size: 43
37974024 CATAGGATCT
* * * * *
37974034 GATATTTGATTTCGTGTAAGACCACGTCTAGGA-TGTTGGCATC
1 GATATTTGATTACATGTAAGACCATGTCTAAGACAG-TGGCATC
* * *
37974077 -A-ACTTATGATTTACGTGTGAGACCATGTCTAAGACA-TCGGCATT
1 GATA-TT-TGA-TTACATGTAAGACCATGTCTAAGACAGT-GGCATC
* * * **
37974121 G-TGTTTGATTTCATGTAAGACCCTGTCTGGGACAGTGGCATC
1 GATATTTGATTACATGTAAGACCATGTCTAAGACAGTGGCATC
*
37974163 GATATTTGATTACATGTAAGACCACGTCT
1 GATATTTGATTACATGTAAGACCATGTCT
37974192 GGGATGTTGT
Statistics
Matches: 88, Mismatches: 18, Indels: 18
0.71 0.15 0.15
Matches are distributed among these distances:
41 1 0.01
42 29 0.33
43 31 0.35
44 27 0.31
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCATGTCTAAGACAGTGGCATC
Found at i:37977630 original size:85 final size:85
Alignment explanation
Indices: 37977487--37977665 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
37977477 GGCCGGCCAT
*
37977487 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGAACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
37977552 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
37977572 GAGCATGGGTGAACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGAACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
37977637 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
37977657 GGGCATGGG
1 GAGCATGGG
37977666 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGAACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:37979606 original size:47 final size:47
Alignment explanation
Indices: 37979537--37979988 Score: 403
Period size: 47 Copynumber: 9.5 Consensus size: 47
37979527 TGAAAGTATA
37979537 TGTGATAA-G-GAATGG--AATGTGATGAATGTGAATGTATATATATATG
1 TGTGATAAGGCGAATGGCCAATGTGATGAATGTGAA---ATATATATATG
* * *
37979583 TGTGAT-A-G-GAATGGCCAATGTGATGAATGTG-AACATGTGTATG
1 TGTGATAAGGCGAATGGCCAATGTGATGAATGTGAAATATATATATG
*
37979626 -GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATG
1 TGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAA---ATATATATATG
* ***
37979676 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AACATGCGTATG
1 TGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAAATATATATATG
*
37979723 CGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATG
1 TGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAA-----ATATATATATG
* ***
37979776 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AACATGCGTATG
1 TGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAAATATATATATG
* *
37979823 CGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACGTATATATATG
1 TGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAA-ATATATATATG
* * * ***
37979872 TGTGATAAGCCGAATGGTCAATGTGATGAATGTG-AACATGCGTATG
1 TGTGATAAGGCGAATGGCCAATGTGATGAATGTGAAATATATATATG
*
37979918 CGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGA-ATATATG
1 TGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAA-AT-ATATATATG
*
37979967 TG-G-TAAGGCCGAATGGCTAATG
1 TGTGATAAGG-CGAATGGCCAATG
37979989 CGAAACGTGT
Statistics
Matches: 338, Mismatches: 45, Indels: 45
0.79 0.11 0.11
Matches are distributed among these distances:
42 5 0.01
43 9 0.03
44 1 0.00
45 8 0.02
46 44 0.13
47 139 0.41
48 27 0.08
49 20 0.06
50 9 0.03
51 34 0.10
52 1 0.00
53 41 0.12
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
TGTGATAAGGCGAATGGCCAATGTGATGAATGTGAAATATATATATG
Found at i:37979813 original size:100 final size:98
Alignment explanation
Indices: 37979552--37979988 Score: 700
Period size: 100 Copynumber: 4.6 Consensus size: 98
37979542 TAAGGAATGG
** *
37979552 AATGTGATGAATGTGAATGTATATATATATGTGTGAT-A-G--GAATGGCCAATGTGATGAATGT
1 AATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
*
37979613 GAACATGTGTATG-GTGATAAGGCCGAATGGCC
66 GAACATGCGTATGCGTGATAAGGCCGAATGGCC
*
37979645 AATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
1 AATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
37979710 GAACATGCGTATGCGTGATAAGGCCGAATGGCC
66 GAACATGCGTATGCGTGATAAGGCCGAATGGCC
37979743 AATGTGATGAATGTGAACCTGTATATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
1 AATGTGATGAATGTGAACCTG--TATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
37979808 GTGAACATGCGTATGCGTGATAAGGCCGAATGGCC
64 GTGAACATGCGTATGCGTGATAAGGCCGAATGGCC
*
37979843 AATGTGATGAATGTGAA-C-GTATATATATGTGTGATAA-GCCGAATGGTCAATGTGATGAATGT
1 AATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
37979905 GAACATGCGTATGCGTGATAAGGCCGAATGGCC
66 GAACATGCGTATGCGTGATAAGGCCGAATGGCC
* *
37979938 AATGTGATGAATGTGAACATG-A-ATATATGTG-G-TAAGGCCGAATGGCTAATG
1 AATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATG
37979989 CGAAACGTGT
Statistics
Matches: 324, Mismatches: 10, Indels: 19
0.92 0.03 0.05
Matches are distributed among these distances:
93 36 0.11
94 15 0.05
95 84 0.26
96 19 0.06
97 35 0.11
98 40 0.12
99 1 0.00
100 94 0.29
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (98 bp):
AATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
GAACATGCGTATGCGTGATAAGGCCGAATGGCC
Found at i:37979915 original size:195 final size:195
Alignment explanation
Indices: 37979552--37979988 Score: 720
Period size: 195 Copynumber: 2.3 Consensus size: 195
37979542 TAAGGAATGG
37979552 AATGTGATGAATGTGAA-TGTATATATATATGTGTGAT-A-G--GAATGGCCAATGTGATGAATG
1 AATGTGATGAATGTGAACTGTATATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
*
37979612 TGAACATGTGTATGGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGT
66 TGAACATGCGTATGGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-CCGTATATATATGT
37979677 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGC
130 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGC
37979742 C
195 C
37979743 AATGTGATGAATGTGAACCTGTATATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
1 AATGTGATGAATGTGAA-CTGTATATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
37979808 GTGAACATGCGTATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-CGTATATATATG
65 GTGAACATGCGTATG-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCGTATATATATG
*
37979872 TGTGATAA-GCCGAATGGTCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGG
129 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGG
37979936 CC
194 CC
*
37979938 AATGTGATGAATGTGAAC---ATGA-ATATATGTG-G-TAAGGCCGAATGGCTAATG
1 AATGTGATGAATGTGAACTGTAT-ATATATATGTGTGATAAGGCCGAATGGCCAATG
37979989 CGAAACGTGT
Statistics
Matches: 235, Mismatches: 3, Indels: 18
0.92 0.01 0.07
Matches are distributed among these distances:
189 18 0.08
190 1 0.00
191 28 0.12
192 1 0.00
193 20 0.09
194 2 0.01
195 75 0.32
196 20 0.09
197 34 0.14
198 36 0.15
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (195 bp):
AATGTGATGAATGTGAACTGTATATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
TGAACATGCGTATGGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCGTATATATATGTG
TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCC
Found at i:37980051 original size:46 final size:46
Alignment explanation
Indices: 37979962--37980052 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
37979952 GAACATGAAT
* * * *
37979962 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
37980008 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
37980053 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:37980065 original size:195 final size:192
Alignment explanation
Indices: 37979552--37980037 Score: 618
Period size: 195 Copynumber: 2.5 Consensus size: 192
37979542 TAAGGAATGG
** * * *
37979552 AATGTGATGAATGTGAATGTATATATATATGTGTGAT-A-G--GAATGGCCAATGTGATGAATGT
1 AATGTGATGAATGTGAACATGTATATATATGTGTGATAAGGCCGAATGGCCAATGCGA-GAACGT
* * * *
37979613 GAACATGTGTATGGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTG
65 GAACATGCGTATCGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAA--CGTATATATATGTG
37979678 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCC
128 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCC
* * *
37979743 AATGTGATGAATGTGAACCTGTATATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
1 AATGTGATGAATGTGAACATG--TATATATATGTGTGATAAGGCCGAATGGCCAATGCGA-GAAC
* *
37979808 GTGAACATGCGTATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACGTATATATATGT
63 GTGAACATGCGTAT-CGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACGTATATATATGT
*
37979873 GTGATAA-GCCGAATGGTCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGC
127 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGC
37979937 C
192 C
*
37979938 AATGTGATGAATGTGAACATG-A-ATATATGTG-G-TAAGGCCGAATGGCTAATGCGA-AACGTG
1 AATGTGATGAATGTGAACATGTATATATATGTGTGATAAGGCCGAATGGCCAATGCGAGAACGTG
* * *
37979998 TATGAGATG-GATAT-GTGGTAAAGCCAAATGGCTAATGTGA
66 -A--ACATGCG-TATCGTGATAAAGCCAAATGGCCAATGTGA
37980038 GATATGTACG
Statistics
Matches: 269, Mismatches: 15, Indels: 25
0.87 0.05 0.08
Matches are distributed among these distances:
187 5 0.02
188 23 0.09
189 21 0.08
190 8 0.03
191 27 0.10
192 1 0.00
193 16 0.06
194 1 0.00
195 78 0.29
196 20 0.07
197 33 0.12
198 36 0.13
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (192 bp):
AATGTGATGAATGTGAACATGTATATATATGTGTGATAAGGCCGAATGGCCAATGCGAGAACGTG
AACATGCGTATCGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACGTATATATATGTGTGA
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCC
Found at i:37980305 original size:37 final size:37
Alignment explanation
Indices: 37980197--37980305 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
37980187 GGAAATATAT
* *
37980197 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTA
37980234 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTA
* * *
37980271 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
37980306 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTA
Found at i:37981839 original size:40 final size:40
Alignment explanation
Indices: 37981556--37981827 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
37981546 GAGAATTGAG
*
37981556 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
37981596 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
37981636 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
37981676 AGTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
37981716 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* ** *
37981756 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
37981796 GGTGTTATATCCGGGCTAGGTCCCGAGGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCA
37981828 ATCATGCTGG
Statistics
Matches: 214, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:37983622 original size:41 final size:41
Alignment explanation
Indices: 37983577--37983707 Score: 99
Period size: 40 Copynumber: 3.1 Consensus size: 41
37983567 AAAACATGTC
37983577 ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
1 ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
* * ** * * * *
37983618 ATAAAGA-GCAT-GGGT-G-GACAAGATGTTATGGCTAAAAACATA
1 ATAAACATG-TTGGGGTAGTG-CATTATG-TAAGGATTAATA-A-A
37983660 TCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
1 --ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
37983703 ATAAA
1 ATAAA
37983708 GGGCATGGGC
Statistics
Matches: 63, Mismatches: 16, Indels: 22
0.62 0.16 0.22
Matches are distributed among these distances:
38 1 0.02
39 6 0.10
40 13 0.21
41 13 0.21
42 1 0.02
43 1 0.02
44 8 0.13
45 13 0.21
46 6 0.10
47 1 0.02
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (41 bp):
ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
Found at i:37983681 original size:85 final size:85
Alignment explanation
Indices: 37983538--37983716 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
37983528 GGCCGGCCAT
*
37983538 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATATCATAAACATGTTGGGGTAGTGCATTAT
37983603 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
37983623 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATATCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATATCATAAACATGTTGGGGTAGTGCATTAT
37983688 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
37983708 GGGCATGGG
1 GAGCATGGG
37983717 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATATCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:37985770 original size:98 final size:98
Alignment explanation
Indices: 37985577--37986199 Score: 812
Period size: 98 Copynumber: 6.3 Consensus size: 98
37985567 ATACGTGAAA
* *
37985577 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATA
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCG--TATATATATGTGTGATA
37985642 AGGCCGAATGGCCAATGTGATGAATGTGAACATGC
64 AGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
37985677 GTATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAG
37985742 GCCGAATGGCCAATGTGATGAATGTGAACATGC
66 GCCGAATGGCCAATGTGATGAATGTGAACATGC
* ** *
37985775 GTATGCATGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATA
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCG--TATATATATGTGTGATA
37985840 AGGCCGAATGGCCAATGTGATGAATGTGAACATGC
64 AGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
37985875 GTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAG
**
37985940 GCCGAATGGCCAATGTGATGAATGTGAACCTGTATATAT
66 GCCGAATGGCCAATGTGATGAATGTGAA-C-----ATGC
*** *
37985979 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--C--ATGCGTATGCGTGATAAG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAG
* **
37986040 GCCGAATGGCTAATGTGATGAATGTGAACCCGTATAT
66 GCCGAATGGCCAATGTGATGAATGTGAA--C--ATGC
*** * *
37986077 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--C--ATGCGTATGCGTGATAAA
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAG
* *
37986138 GCCGAATGGCCAATGTGATGAATTTGAACATGA
66 GCCGAATGGCCAATGTGATGAATGTGAACATGC
* * *
37986171 ATATATGTGGTAAGGCCGAATGGCTAATG
1 ATATGTGTGATAAGGCCGAATGGCCAATG
37986200 CGAAACGTGT
Statistics
Matches: 488, Mismatches: 26, Indels: 24
0.91 0.05 0.04
Matches are distributed among these distances:
94 28 0.06
96 1 0.00
98 234 0.48
99 1 0.00
100 178 0.36
101 2 0.00
102 1 0.00
104 43 0.09
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.27
Consensus pattern (98 bp):
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAG
GCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:37985846 original size:151 final size:143
Alignment explanation
Indices: 37985577--37986199 Score: 766
Period size: 151 Copynumber: 4.2 Consensus size: 143
37985567 ATACGTGAAA
*
37985577 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATA
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC----TATATATATGTGTGATA
* *
37985642 AGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCAATGT
62 AGGCCGAATGGCCAATGTGATGAATGTGAACATACATATGCGTGATAAGGCCGAATGGCCAATGT
*
37985707 GATGAATGTGAACCCGTATAT
127 GATGAATGTGAA--C--ATAC
*** **
37985728 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C-ATGCGTATGCATGATAAGGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTATATATATGTGTGATAAGGC
* *
37985791 CGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATAAGGCCGAATGGCCAAT
66 CGAATGGCCAATGTGATGAATGTGAA-C-----ATACATATGCGTGATAAGGCCGAATGGCCAAT
*
37985856 GTGATGAATGTGAACATGC
125 GTGATGAATGTGAACATAC
*
37985875 GTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-CC-TATATATATGTGTGATAAG
* *
37985940 GCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATAAGGCCGAATGGCCA
64 GCCGAATGGCCAATGTGATGAATGTGAA-C-----ATACATATGCGTGATAAGGCCGAATGGCCA
*
37986005 ATGTGATGAATGTGAACATGC
123 ATGTGATGAATGTGAACATAC
* * *
37986026 GTATGCGTGATAAGGCCGAATGGCTAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-CC-TATATATATGTGTGATAAG
* * *
37986091 GCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAAGCCGAATGGCCAATGTGA
64 GCCGAATGGCCAATGTGATGAATGTGAACATACATATGCGTGATAAGGCCGAATGGCCAATGTGA
*
37986156 TGAATTTGAACATGA-
129 TGAATGTGAACAT-AC
* * *
37986171 ATATATGTGGTAAGGCCGAATGGCTAATG
1 ATATGTGTGATAAGGCCGAATGGCCAATG
37986200 CGAAACGTGT
Statistics
Matches: 430, Mismatches: 31, Indels: 28
0.88 0.06 0.06
Matches are distributed among these distances:
145 109 0.25
146 1 0.00
147 43 0.10
149 2 0.00
150 2 0.00
151 273 0.63
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.27
Consensus pattern (143 bp):
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTATATATATGTGTGATAAGGC
CGAATGGCCAATGTGATGAATGTGAACATACATATGCGTGATAAGGCCGAATGGCCAATGTGATG
AATGTGAACATAC
Found at i:37985922 original size:198 final size:198
Alignment explanation
Indices: 37985584--37986199 Score: 838
Period size: 198 Copynumber: 3.1 Consensus size: 198
37985574 AAAATATATG
37985584 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATAAGGCCGA
1 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATAAGGCCGA
*
37985649 ATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCAATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
37985714 GTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTAT
131 GTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATAT
37985779 GCA
196 GCA
37985782 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATAAGGCCGA
1 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATAAGGCCGA
37985847 ATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
37985912 GTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATAT
131 GTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C-----AT
** **
37985977 ATATATGTG
190 GCATATGCA
*** *
37985986 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C-----ATGCGTATGCGTGATAAGGCCGA
1 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATAAGGCCGA
* ***
37986045 ATGGCTAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGAT
66 ATGGCCAATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGAT
*** * * * *
37986110 GAATGTGAA--C--ATGCGTATGCGTGATAAAGCCGAATGGCCAATGTGATGAATTTGAACATGA
127 GAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
***
37986171 ATATATG
192 ATATGCA
* *
37986178 TGGTAAGGCCGAATGGCTAATG
1 TGATAAGGCCGAATGGCCAATG
37986200 CGAAACGTGT
Statistics
Matches: 383, Mismatches: 25, Indels: 26
0.88 0.06 0.06
Matches are distributed among these distances:
192 28 0.07
197 1 0.00
198 266 0.69
199 1 0.00
200 2 0.01
202 43 0.11
203 1 0.00
204 41 0.11
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (198 bp):
TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
GTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATAT
GCA
Found at i:37986262 original size:46 final size:46
Alignment explanation
Indices: 37986173--37986263 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
37986163 GAACATGAAT
* * * *
37986173 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
37986219 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
37986264 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:37986276 original size:349 final size:346
Alignment explanation
Indices: 37985577--37986248 Score: 1108
Period size: 349 Copynumber: 1.9 Consensus size: 346
37985567 ATACGTGAAA
*
37985577 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATA
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATA
37985642 AGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCAATGT
66 AGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCAATGT
37985707 GATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
131 GATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
37985772 TGCGTATGCATGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTG
196 TGCGTATGCATGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATG--TATATATATGTGTG
* * * *
37985837 ATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAA
259 ATAAGGCCGAATGGCCAATGCGA-GAACGTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAA
37985902 TGTGATGAATGTGAACCCGTATAT
323 TGTGATGAATGTGAACCCGTATAT
37985926 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATA
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATA
*
37985991 AGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCTAATGT
66 AGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCAATGT
37986056 GATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
131 GATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
37986121 TGCGTATGCGTGATAAAGCCGAATGGCCAATGTGATGAATTTGAACATG-A-ATATATGTG-G-T
196 TGCGTATGCATGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATATGTGTGAT
* * *
37986182 AAGGCCGAATGGCTAATGCGA-AACGTGTATGAGATG-GATATGTG-G-TAAAGCCAAATGGCTA
261 AAGGCCGAATGGCCAATGCGAGAACGTG-A--ACATGCG-TATGTGTGATAAAGCCAAATGGCCA
37986243 ATGTGA
322 ATGTGA
37986249 GATATGTACG
Statistics
Matches: 306, Mismatches: 13, Indels: 15
0.92 0.04 0.04
Matches are distributed among these distances:
341 5 0.02
342 20 0.07
343 22 0.07
344 11 0.04
345 9 0.03
346 1 0.00
349 238 0.78
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.27
Consensus pattern (346 bp):
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGTGTGATA
AGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCAATGT
GATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGCATGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATATGTGTGAT
AAGGCCGAATGGCCAATGCGAGAACGTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGT
GATGAATGTGAACCCGTATAT
Found at i:37986516 original size:37 final size:37
Alignment explanation
Indices: 37986408--37986516 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
37986398 GGAAATATAT
*
37986408 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
37986445 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
37986482 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
37986517 CATCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:37995466 original size:25 final size:25
Alignment explanation
Indices: 37995432--37995481 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
37995422 TTTGGGTTAT
37995432 CGATTTATAGCTCGTAAGAGCATAC
1 CGATTTATAGCTCGTAAGAGCATAC
*
37995457 CGATTTATAGCTCGTGAGAGCATAC
1 CGATTTATAGCTCGTAAGAGCATAC
37995482 TGATCTTCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (25 bp):
CGATTTATAGCTCGTAAGAGCATAC
Found at i:37995525 original size:25 final size:24
Alignment explanation
Indices: 37995438--37995531 Score: 75
Period size: 25 Copynumber: 3.8 Consensus size: 24
37995428 TTATCGATTT
* *
37995438 ATAGCTCGTAAGAGCATACCGATTT
1 ATAGCTCGTATGAGCATACCGA-TC
*
37995463 ATAGCTCGTGA-GAGCATACTGATC
1 ATAGCTCGT-ATGAGCATACCGATC
* *
37995487 TTCAGCTCAG-ATGAGCATACCAACTC
1 AT-AGCTC-GTATGAGCATACCGA-TC
*
37995513 ATAGCTCGTATGATCATAC
1 ATAGCTCGTATGAGCATAC
37995532 ATGTATATGG
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
24 4 0.07
25 47 0.84
26 5 0.09
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (24 bp):
ATAGCTCGTATGAGCATACCGATC
Found at i:37997816 original size:37 final size:37
Alignment explanation
Indices: 37997766--37997841 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
37997756 GTTACTTACT
37997766 TATTACTTGATCAAATGGTAACTTAAATTCTATGTTA
1 TATTACTTGATCAAATGGTAACTTAAATTCTATGTTA
*
37997803 TATTACTTGATCAAATGGTAAGTTAAATTCTATGTTA
1 TATTACTTGATCAAATGGTAACTTAAATTCTATGTTA
37997840 TA
1 TA
37997842 CAAACTTACT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (37 bp):
TATTACTTGATCAAATGGTAACTTAAATTCTATGTTA
Found at i:38002612 original size:37 final size:37
Alignment explanation
Indices: 38002556--38002632 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
38002546 TCTTTCATAT
38002556 TATGGTAACAGGTACATCCTAGTGGCTGTTGACTATG
1 TATGGTAACAGGTACATCCTAGTGGCTGTTGACTATG
**
38002593 TATGGTAACAGGTGTATCCTAGTGGCTGTTGACTATG
1 TATGGTAACAGGTACATCCTAGTGGCTGTTGACTATG
38002630 TAT
1 TAT
38002633 CCTAGTGGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.35
Consensus pattern (37 bp):
TATGGTAACAGGTACATCCTAGTGGCTGTTGACTATG
Found at i:38009989 original size:34 final size:33
Alignment explanation
Indices: 38009926--38009995 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 33
38009916 TAATTGAACA
* **
38009926 TTGTGCAATGATGAGTTATCTTATGGTTGAATG
1 TTGTGCAATAATGAGTTATCTTACAGTTGAATG
38009959 TTGTGCAAATAATGAGTTAT-TCTACAGTTGAATG
1 TTGTGC-AATAATGAGTTATCT-TACAGTTGAATG
38009993 TTG
1 TTG
38009996 ATGTATTGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 7 0.22
34 25 0.78
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.41
Consensus pattern (33 bp):
TTGTGCAATAATGAGTTATCTTACAGTTGAATG
Found at i:38011584 original size:27 final size:27
Alignment explanation
Indices: 38011554--38011729 Score: 201
Period size: 27 Copynumber: 6.5 Consensus size: 27
38011544 ATTGAGTCCA
* * * *
38011554 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTACATAGTCAAATCG
* *
38011581 CACACTTAGTGCTACGTAATCAAATCG
1 CACACTTAGTGCTACATAGTCAAATCG
38011608 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAGTCAAA-TCG
** * *
38011636 CACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAGTCAAATCG
* **
38011663 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAGTCAAATCG
*
38011690 CACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTACATAGTCAAATCG
38011717 CACACTTAGTGCT
1 CACACTTAGTGCT
38011730 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CACACTTAGTGCTACATAGTCAAATCG
Found at i:38011691 original size:82 final size:81
Alignment explanation
Indices: 38011573--38011728 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
38011563 TGCTATATAA
* *
38011573 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
38011638 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
38011655 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
38011719 CACTTAGTGC
65 CACTTAGTGC
38011729 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:38019753 original size:27 final size:27
Alignment explanation
Indices: 38019723--38019900 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
38019713 ATATTGAGTC
* * * *
38019723 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
38019750 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
38019777 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
38019805 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
38019832 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
38019859 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
38019886 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
38019901 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:38019862 original size:82 final size:81
Alignment explanation
Indices: 38019744--38019899 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
38019734 TGCTATATAA
* *
38019744 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
38019809 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
38019826 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
38019890 CACTTAGTGC
65 CACTTAGTGC
38019900 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:38025202 original size:52 final size:51
Alignment explanation
Indices: 38025106--38025342 Score: 217
Period size: 50 Copynumber: 4.7 Consensus size: 51
38025096 GTTGTGAGAA
* *** *
38025106 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTCTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGG-CTTAGGT
*
38025158 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGG-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGCTTAGGT
* * * ** * * * *
38025208 CGCATGTGTAGTACAAAGTACAGGCTACTATGCATACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGCTTAGGT
* * ** *
38025259 CACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGCTTAGGT
* * * * * *
38025309 CACAAGTGTGGTACTATGTGAAGGCAACTTTGTG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG
38025343 AAGAAGGTAG
Statistics
Matches: 152, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
50 73 0.48
51 41 0.27
52 38 0.25
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGCTTAGGT
Found at i:38025354 original size:50 final size:50
Alignment explanation
Indices: 38025106--38025384 Score: 159
Period size: 50 Copynumber: 5.5 Consensus size: 50
38025096 GTTGTGAGAA
* * * * *
38025106 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAA-ATGGTCTTAGGT
1 CACAAGTGTGGTACTATGTGCAGGCAACTATGTG-TAAAAGATAG-CTT-GGT
** * * * ** *
38025158 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-GGTTAGGT
1 CACAAGTGTGGTACTATGTGCAGGCAACTATGTGTAAAAGATAGCTT-GGT
* * * * * * * ** *** *
38025208 CGCATGTGTAGTACAAAGTACAGGCTACTATGCATACCCGATAGCTTCGAT
1 CACAAGTGTGGTACTATGTGCAGGCAACTATGTGTAAAAGATAGCTT-GGT
* * *
38025259 CACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTGGT
1 CACAAGTGTGGTACTATGTGCAGGCAACTATGTGTAAAAGATAGCTTGGT
* * * * *
38025309 CACAAGTGTGGTACTATGTGAAGGCAACTTTGTG-AAGAAGGTAGCTTTGA
1 CACAAGTGTGGTACTATGTGCAGGCAACTATGTGTAA-AAGATAGCTTGGT
*
38025359 CTACAAGGGTGGTACTATGTGCAGGC
1 C-ACAAGTGTGGTACTATGTGCAGGC
38025385 CACCGAGCAT
Statistics
Matches: 186, Mismatches: 37, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
49 2 0.01
50 83 0.45
51 67 0.36
52 34 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (50 bp):
CACAAGTGTGGTACTATGTGCAGGCAACTATGTGTAAAAGATAGCTTGGT
Found at i:38031220 original size:40 final size:39
Alignment explanation
Indices: 38031169--38031360 Score: 207
Period size: 38 Copynumber: 5.0 Consensus size: 39
38031159 TCCAGTTACT
* ** *
38031169 AGCACAAAGCCTGCGGGA-CTTTAGGCCTGGATATATTTCC
1 AGCACATAGCCTGCGGGACCTCAAGGCC-GGATAT-GTTCC
*
38031209 AGCACATAGCCTGC-GGACCTCAAGTCCGGATATGTTCC
1 AGCACATAGCCTGCGGGACCTCAAGGCCGGATATGTTCC
* *
38031247 AGCACGTAGCCTGC-GGACCTCAAGTCCGGATATGTTCC
1 AGCACATAGCCTGCGGGACCTCAAGGCCGGATATGTTCC
** * *
38031285 AGCAC-TAGCCT-ATGGACCTCAAGTCTGGATATGTTCC
1 AGCACATAGCCTGCGGGACCTCAAGGCCGGATATGTTCC
* *
38031322 AGCACGTAGCCTGC-GGACCTCAAGTCCGGATATGTTCC
1 AGCACATAGCCTGCGGGACCTCAAGGCCGGATATGTTCC
38031360 A
1 A
38031361 AATATCATGC
Statistics
Matches: 138, Mismatches: 10, Indels: 10
0.87 0.06 0.06
Matches are distributed among these distances:
37 34 0.25
38 76 0.55
39 9 0.07
40 19 0.14
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.23
Consensus pattern (39 bp):
AGCACATAGCCTGCGGGACCTCAAGGCCGGATATGTTCC
Found at i:38031257 original size:38 final size:38
Alignment explanation
Indices: 38031201--38031360 Score: 270
Period size: 38 Copynumber: 4.3 Consensus size: 38
38031191 AGGCCTGGAT
*
38031201 ATAT-TTCCAGCACATAGCCTGCGGACCTCAAGTCCGG
1 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
38031238 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
1 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
** *
38031276 ATATGTTCCAGCAC-TAGCCTATGGACCTCAAGTCTGG
1 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
38031313 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
1 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
38031351 ATATGTTCCA
1 ATATGTTCCA
38031361 AATATCATGC
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
37 38 0.33
38 76 0.67
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.24
Consensus pattern (38 bp):
ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
Found at i:38031305 original size:75 final size:76
Alignment explanation
Indices: 38031201--38031360 Score: 279
Period size: 75 Copynumber: 2.1 Consensus size: 76
38031191 AGGCCTGGAT
*
38031201 ATAT-TTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATATGTTCCAGCACGTAGCCTGCGGAC
1 ATATGTTCCAGCACATAGCCTACGGACCTCAAGTCCGGATATGTTCCAGCACGTAGCCTGCGGAC
38031265 CTCAAGTCCGG
66 CTCAAGTCCGG
* *
38031276 ATATGTTCCAGCAC-TAGCCTATGGACCTCAAGTCTGGATATGTTCCAGCACGTAGCCTGCGGAC
1 ATATGTTCCAGCACATAGCCTACGGACCTCAAGTCCGGATATGTTCCAGCACGTAGCCTGCGGAC
38031340 CTCAAGTCCGG
66 CTCAAGTCCGG
38031351 ATATGTTCCA
1 ATATGTTCCA
38031361 AATATCATGC
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
75 72 0.89
76 9 0.11
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.24
Consensus pattern (76 bp):
ATATGTTCCAGCACATAGCCTACGGACCTCAAGTCCGGATATGTTCCAGCACGTAGCCTGCGGAC
CTCAAGTCCGG
Found at i:38034581 original size:51 final size:51
Alignment explanation
Indices: 38034489--38034604 Score: 133
Period size: 51 Copynumber: 2.3 Consensus size: 51
38034479 GGTTAGGTTG
* * * ***
38034489 CATGTGTAGTACAAAGTGCAGGCTACTATGCATACCCGATAGCTTCGATCA
1 CATGTGTGGTACTAAGTGCAGGATACTATGCATAAAAGATAGCTTCGATCA
** * *
38034540 CATGTGTGGTACTAAGTGCAGGATACTATGTGTAAAAGATAGCTTTGGTCA
1 CATGTGTGGTACTAAGTGCAGGATACTATGCATAAAAGATAGCTTCGATCA
*
38034591 CAAGTGTGGTACTA
1 CATGTGTGGTACTA
38034605 TTTGAAGGAC
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (51 bp):
CATGTGTGGTACTAAGTGCAGGATACTATGCATAAAAGATAGCTTCGATCA
Found at i:38043622 original size:79 final size:80
Alignment explanation
Indices: 38043524--38043706 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 80
38043514 TACTCGTTCA
* * *
38043524 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACCTG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCACACAAATGCCTTC-GGATCTTAGACC-G
* * *
38043586 GATTTAGTGAC-TCGCACC
63 GATATAGTCACTTAGCA-C
*
38043604 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGATCTTAGACCGGAT
38043668 ATAGTCACTTAGCAC
66 ATAGTCACTTAGCAC
*
38043683 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
38043707 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
78 3 0.03
79 57 0.63
80 30 0.33
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGATCTTAGACCGGAT
ATAGTCACTTAGCAC
Found at i:38043706 original size:40 final size:40
Alignment explanation
Indices: 38043522--38043706 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
38043512 ACTACTCGTT
* * *
38043522 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * * * *
38043562 CAAATGCCTTCGGGACTTAACCTGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
*
38043602 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACT-AGCA
* *
38043641 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
38043682 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
38043707 CATCATTCGA
Statistics
Matches: 121, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
38 2 0.02
39 28 0.23
40 80 0.66
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:38051715 original size:40 final size:40
Alignment explanation
Indices: 38051678--38051783 Score: 151
Period size: 40 Copynumber: 2.6 Consensus size: 40
38051668 ACTACTCGTT
*
38051678 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
38051718 CAAATGCCTTCGAGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
38051758 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
38051784 CATCATTCGA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 56 0.97
41 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:38053204 original size:21 final size:22
Alignment explanation
Indices: 38053174--38053214 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
38053164 GCTCCGAATA
38053174 AATTGAAAGAATTGA-AAGCTC
1 AATTGAAAGAATTGATAAGCTC
* *
38053195 AATTGCAAGAGTTGATAAGC
1 AATTGAAAGAATTGATAAGC
38053215 AAGGGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (22 bp):
AATTGAAAGAATTGATAAGCTC
Found at i:38056813 original size:30 final size:30
Alignment explanation
Indices: 38056775--38056838 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
38056765 TCAAAAATGT
38056775 AATT-TTGTCATAATATGATTTTTGGACTG
1 AATTATTGTCATAATATGATTTTTGGACTG
*
38056804 AATTATTGTCATAATATGATTTTTGGACTT
1 AATTATTGTCATAATATGATTTTTGGACTG
38056834 AATTA
1 AATTA
38056839 AACAATGTGA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 4 0.12
30 29 0.88
ACGTcount: A:0.31, C:0.06, G:0.14, T:0.48
Consensus pattern (30 bp):
AATTATTGTCATAATATGATTTTTGGACTG
Found at i:38062914 original size:28 final size:28
Alignment explanation
Indices: 38062882--38062946 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
38062872 ATTTACTAGA
*
38062882 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
38062910 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
38062938 ATACCCCTA
1 ATACCCCTA
38062947 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:38063093 original size:28 final size:29
Alignment explanation
Indices: 38063052--38063114 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
38063042 AGGAAGCGTC
*
38063052 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
*
38063080 CTGGTGGC-ACTGCCACAAAATATTTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
38063109 CTGGTG
1 CTGGTG
38063115 ACTCTGTCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 1 0.03
28 23 0.74
29 7 0.23
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:38063125 original size:29 final size:28
Alignment explanation
Indices: 38063062--38063125 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
38063052 CTGGTGGCTA
* *
38063062 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
38063090 TGCCACAAAATATTTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
38063119 TGTCACA
1 TGCCACA
38063126 TTTTCTGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:38063592 original size:19 final size:19
Alignment explanation
Indices: 38063568--38063606 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
38063558 TTTTAATTAT
*
38063568 TTTTATGATTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
38063587 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
38063606 T
1 T
38063607 ATGATGAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:38064605 original size:37 final size:37
Alignment explanation
Indices: 38064555--38064633 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
38064545 TTATTACGAA
* * *
38064555 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
38064592 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
38064629 GTCTT
1 GTCTT
38064634 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:38065091 original size:192 final size:190
Alignment explanation
Indices: 38064752--38065146 Score: 643
Period size: 192 Copynumber: 2.1 Consensus size: 190
38064742 CCCTTCGGGA
* * * *
38064752 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCAGCCCTGTCACATATATAC
1 CTTATCACATATATACACACTTTCACATCCATCACATCGGCCACTCAGCCCTATCACATATATAC
38064815 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
38064880 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
* * *
38064940 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATA
1 CTTATCACATATATACACACTTTCACATCCATCACATCGGCCACTCA-GCCCTATCAC--ATATA
38065004 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
63 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
* **
38065069 ACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACATTGGCCATTAGGC
128 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
38065132 CTTATCACATATATA
1 CTTATCACATATATA
38065147 TACGCTGTCT
Statistics
Matches: 191, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
188 10 0.05
189 3 0.02
190 34 0.18
192 144 0.75
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACACTTTCACATCCATCACATCGGCCACTCAGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
Found at i:38065149 original size:47 final size:47
Alignment explanation
Indices: 38064752--38065146 Score: 639
Period size: 47 Copynumber: 8.3 Consensus size: 47
38064742 CCCTTCGGGA
* * * * *
38064752 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
38064799 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
38064846 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
38064893 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38064940 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
38064989 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38065038 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38065085 CTTATCACATATATATACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38065132 CTTATCACATATATA
1 CTTATCACATATATA
38065147 TACGCTGTCT
Statistics
Matches: 328, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
46 2 0.01
47 239 0.73
49 81 0.25
51 6 0.02
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:38068665 original size:40 final size:40
Alignment explanation
Indices: 38068635--38068943 Score: 451
Period size: 40 Copynumber: 7.8 Consensus size: 40
38068625 AGCATGATTA
* * *
38068635 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
38068675 CTCTTCGAGG-TTTAGCACGGATATATTACTAGCACGAATG
1 CTCTTCG-GGACTTAGCCCGGATATATCACTAGCACGAATG
** *
38068715 CTCTTCGAAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
38068755 CTCCTCGAGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
38068795 CTC-TCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
38068834 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
38068874 CTCATCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
38068914 CTCCTCAGGACTTAGCCCAGATATATCACT
1 CTCTTCGGGACTTAGCCCGGATATATCACT
38068944 CTCAATTCTC
Statistics
Matches: 246, Mismatches: 20, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
39 38 0.15
40 206 0.84
41 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:38068869 original size:159 final size:159
Alignment explanation
Indices: 38068639--38068943 Score: 470
Period size: 159 Copynumber: 1.9 Consensus size: 159
38068629 TGATTACTCT
* * *
38068639 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGAGGTTTAGCACGGATATATTAC
1 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCCTCGAGGCTTAGCACGGATATATCAC
*
38068704 TAGCACGAATGCTCTTCGAAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTC-GAGACTT
66 TAGCACGAATGCTCATCGAAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCAG-GACTT
*
38068768 AGCCCGGATATATCACTAGCACGAATGCTC
130 AGCCCAGATATATCACTAGCACGAATGCTC
* * * *
38068798 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCG-GGACTTAGCCCGGATATATCA
1 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCCTCGAGG-CTTAGCACGGATATATCA
** *
38068862 CTAGCACGAATGCTCATCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCAGGACTT
65 CTAGCACGAATGCTCATCGAAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCAGGACTT
38068927 AGCCCAGATATATCACT
130 AGCCCAGATATATCACT
38068944 CTCAATTCTC
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
158 2 0.02
159 129 0.98
160 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (159 bp):
TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCCTCGAGGCTTAGCACGGATATATCAC
TAGCACGAATGCTCATCGAAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCAGGACTTA
GCCCAGATATATCACTAGCACGAATGCTC
Found at i:38070208 original size:37 final size:37
Alignment explanation
Indices: 38070158--38070236 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
38070148 TTATTACGAA
* * *
38070158 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
38070195 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
38070232 GTCTT
1 GTCTT
38070237 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:38070694 original size:192 final size:190
Alignment explanation
Indices: 38070355--38070749 Score: 659
Period size: 192 Copynumber: 2.1 Consensus size: 190
38070345 CCCTTCGGGA
* * * * *
38070355 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATACACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
38070418 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
38070483 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
38070543 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATACACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATAT
38070608 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
* *
38070673 CATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACATTGGCCATTAGGC
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38070735 CTTATCACATATATA
1 CTTATCACATATATA
38070750 TACGCTGTCT
Statistics
Matches: 192, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
188 10 0.05
189 1 0.01
190 36 0.19
192 145 0.76
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:38070752 original size:47 final size:47
Alignment explanation
Indices: 38070355--38070749 Score: 655
Period size: 47 Copynumber: 8.3 Consensus size: 47
38070345 CCCTTCGGGA
* * * * * *
38070355 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38070402 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
38070449 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38070496 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38070543 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
38070592 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38070641 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38070688 CTTATCACATATATATACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38070735 CTTATCACATATATA
1 CTTATCACATATATA
38070750 TACGCTGTCT
Statistics
Matches: 330, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 242 0.73
49 82 0.25
51 6 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:38073535 original size:11 final size:10
Alignment explanation
Indices: 38073507--38073540 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
38073497 AGCCTGTAAG
38073507 TATTCTGAAT
1 TATTCTGAAT
*
38073517 TTTTCTGAAT
1 TATTCTGAAT
38073527 ATATTCTGAAT
1 -TATTCTGAAT
38073538 TAT
1 TAT
38073541 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:38080079 original size:28 final size:28
Alignment explanation
Indices: 38080039--38080103 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
38080029 ATTTACTAGA
* *
38080039 ATACCCCTATGTATGCAAAATTATCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
38080067 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
38080095 ATACCCCTA
1 ATACCCCTA
38080104 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:38080250 original size:28 final size:29
Alignment explanation
Indices: 38080209--38080271 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
38080199 AGGAAGCGTC
*
38080209 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
38080237 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
38080266 CTGGTG
1 CTGGTG
38080272 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:38080282 original size:29 final size:28
Alignment explanation
Indices: 38080219--38080282 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
38080209 CTGGTGGCTA
* *
38080219 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
38080247 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
38080276 TGTCACA
1 TGCCACA
38080283 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:38080749 original size:19 final size:19
Alignment explanation
Indices: 38080725--38080763 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
38080715 TTTTAATTAT
* *
38080725 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
38080744 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
38080763 T
1 T
38080764 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:38083434 original size:13 final size:13
Alignment explanation
Indices: 38083418--38083533 Score: 67
Period size: 13 Copynumber: 8.7 Consensus size: 13
38083408 AAATTTATAA
38083418 ATGAAATGGTTAT
1 ATGAAATGGTTAT
*
38083431 ATG-AATCAGTTAT
1 ATGAAAT-GGTTAT
**
38083444 ATGGAAA-CATATAT
1 AT-GAAATGGT-TAT
38083458 ATGAAATGGTTAT
1 ATGAAATGGTTAT
*
38083471 ATG-ATTCGGTTAT
1 ATGAAAT-GGTTAT
* * *
38083484 ATGGAAATTGATAA
1 AT-GAAATGGTTAT
38083498 ATGAAATGGTTAT
1 ATGAAATGGTTAT
* * *
38083511 ATAAAAATAGATAT
1 AT-GAAATGGTTAT
38083525 ATGAAATGG
1 ATGAAATGG
38083534 AACATTGGGC
Statistics
Matches: 76, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
12 5 0.07
13 44 0.58
14 23 0.30
15 4 0.05
ACGTcount: A:0.43, C:0.03, G:0.20, T:0.34
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:38083473 original size:40 final size:39
Alignment explanation
Indices: 38083413--38083512 Score: 146
Period size: 40 Copynumber: 2.5 Consensus size: 39
38083403 GTGAAAAATT
38083413 TATAAATGAAATGGTTATATGAATCAGTTATATGGAAACA
1 TATAAATGAAATGGTTATATGAATCAGTTATATGGAAA-A
* * * *
38083453 TATATATGAAATGGTTATATGATTCGGTTATATGGAAAT
1 TATAAATGAAATGGTTATATGAATCAGTTATATGGAAAA
38083492 TGATAAATGAAATGGTTATAT
1 T-ATAAATGAAATGGTTATAT
38083513 AAAAATAGAT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.02
40 53 0.98
ACGTcount: A:0.41, C:0.03, G:0.19, T:0.37
Consensus pattern (39 bp):
TATAAATGAAATGGTTATATGAATCAGTTATATGGAAAA
Found at i:38083508 original size:27 final size:27
Alignment explanation
Indices: 38083478--38083533 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
38083468 TATATGATTC
** *
38083478 GGTTATATGGAAATTGATAAATGAAAT
1 GGTTATATAAAAATAGATAAATGAAAT
*
38083505 GGTTATATAAAAATAGATATATGAAAT
1 GGTTATATAAAAATAGATAAATGAAAT
38083532 GG
1 GG
38083534 AACATTGGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.46, C:0.00, G:0.21, T:0.32
Consensus pattern (27 bp):
GGTTATATAAAAATAGATAAATGAAAT
Found at i:38094388 original size:40 final size:40
Alignment explanation
Indices: 38094330--38094497 Score: 191
Period size: 40 Copynumber: 4.2 Consensus size: 40
38094320 TCTTCTGGAT
*
38094330 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGAGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGAGTC
38094369 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTC-AGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGA-GTC
* * * * *
38094409 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGAGTC
* * *
38094449 ATAGCCCGGATATAGCAACTCACACGAATGCCTTCG-GATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGAG-TC
*
38094489 TTAGTCCGG
1 TTAGCCCGG
38094498 TTATCATCCG
Statistics
Matches: 108, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
39 8 0.07
40 98 0.91
41 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGAGTC
Found at i:38094467 original size:80 final size:79
Alignment explanation
Indices: 38094321--38094497 Score: 225
Period size: 80 Copynumber: 2.2 Consensus size: 79
38094311 ACCCAAGTAT
* * *
38094321 CTTCTGGAT-TTAGCCGGATATAACAACTCGCACAAATGCCTTCGAGTCTTAGCCCGGATATAGC
1 CTTC-GGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGAGACATAGCCCGGATATAGC
*
38094385 AACTCGCACAAATGC
65 AACTCACACAAATGC
* *
38094400 CTTCAGG-TCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATA
1 CTTC-GGATCTTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGAGACATAGCCCGGATATA
*
38094463 GCAACTCACACGAATGC
63 GCAACTCACACAAATGC
38094480 CTTCGGATCTTAGTCCGG
1 CTTCGGATCTTAG-CCGG
38094498 TTATCATCCG
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 12 0.14
80 71 0.84
81 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGAGACATAGCCCGGATATAGCA
ACTCACACAAATGC
Found at i:38098277 original size:2 final size:2
Alignment explanation
Indices: 38098270--38098300 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
38098260 ACATCACATT
38098270 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
38098301 TATATATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:38103451 original size:53 final size:53
Alignment explanation
Indices: 38103371--38103531 Score: 198
Period size: 53 Copynumber: 3.0 Consensus size: 53
38103361 TTTTCTTTTT
* * * *
38103371 TGAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
*
38103424 TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGGA-CCTTTGCCTTA
1 TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTA
* * * * *
38103477 TAGTAACTCATCAATGCCATGCCTTGGCAAGGTCTTACATGATATCCTTGTCTTA
1 T-G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
38103532 CCAAATGCCA
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
52 2 0.02
53 46 0.49
54 1 0.01
55 42 0.45
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
Found at i:38103562 original size:47 final size:46
Alignment explanation
Indices: 38103507--38103625 Score: 202
Period size: 47 Copynumber: 2.5 Consensus size: 46
38103497 GCCTTGGCAA
38103507 GGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAACAT
1 GGTCTTACATG-TATCCTTGTCTTACCAAATGCCATGTTCCAAACAT
38103554 GGTCTTACATTGTATCCTTGTCTTACCAAATGCCATGTTCCAAACAT
1 GGTCTTACA-TGTATCCTTGTCTTACCAAATGCCATGTTCCAAACAT
*
38103601 GGCCTTACATGGTATCCTTGTCTTA
1 GGTCTTACAT-GTATCCTTGTCTTA
38103626 GTGCCAATGC
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
46 1 0.01
47 66 0.96
48 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.36
Consensus pattern (46 bp):
GGTCTTACATGTATCCTTGTCTTACCAAATGCCATGTTCCAAACAT
Found at i:38103831 original size:44 final size:44
Alignment explanation
Indices: 38103762--38103848 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
38103752 GTATCCTTAA
* * *
38103762 CTGTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTC
1 CTGTCAATTCCTCCATAAATGCCATGGTA-CAACCATGGACTTTC
* * *
38103806 CTGTCAATTCTTCCATAATTTCCATGGTACAACCATGGACTTT
1 CTGTCAATTCCTCCATAAATGCCATGGTACAACCATGGACTTT
38103849 GAGATATCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (44 bp):
CTGTCAATTCCTCCATAAATGCCATGGTACAACCATGGACTTTC
Found at i:38109430 original size:42 final size:42
Alignment explanation
Indices: 38109318--38109472 Score: 152
Period size: 42 Copynumber: 3.7 Consensus size: 42
38109308 TACCATACCA
* * *
38109318 ATGCCATATCCCAGATATGGCCTTACATG--GGATCTCGTATCA
1 ATGCCATATCCCAGATATGGCCTTACACGAAGTATC-C-TATCG
* * * *
38109360 ATTCCAATAGCCAAGCTATGGCCTTACACGAAGTATCCTATCG
1 ATGCC-ATATCCCAGATATGGCCTTACACGAAGTATCCTATCG
* * * *
38109403 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATAG
1 ATGCCATATCCCAGATATGGCCTTACACGAAGTATCCTATCG
* *
38109445 ATGCCATATCCCAGATATAGTCTTACAC
1 ATGCCATATCCCAGATATGGCCTTACAC
38109473 ATAGTCATAG
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 61 0.65
43 28 0.30
44 1 0.01
45 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGCCTTACACGAAGTATCCTATCG
Found at i:38113484 original size:99 final size:101
Alignment explanation
Indices: 38113295--38113486 Score: 280
Period size: 99 Copynumber: 1.9 Consensus size: 101
38113285 CTAGGTTGCA
* *
38113295 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAG
* *
38113360 TGCAAGCTACTACGTGTATCAGATAGTTAGGTTATG
66 TGCAAGCTACTACGCGTACCAGATAGTTAGGTTATG
* * * *
38113396 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GGTCGCATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAG
* *
38113459 TGCAGGCTACTATGCGTACCAGATAGTT
66 TGCAAGCTACTACGCGTACCAGATAGTT
38113487 TGGCTACATA
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 42 0.52
100 2 0.02
101 37 0.46
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAG
TGCAAGCTACTACGCGTACCAGATAGTTAGGTTATG
Found at i:38118123 original size:40 final size:40
Alignment explanation
Indices: 38118072--38118181 Score: 152
Period size: 40 Copynumber: 2.8 Consensus size: 40
38118062 GGATATAGCT
*
38118072 ACTCGCTCAAATGCCTTCGGGACTTAGCCC-GAATATAGT-
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTC
*
38118111 AGTTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 A-CTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
* *
38118152 ACTAGCAAAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
38118182 AGTTACCATC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
39 1 0.02
40 57 0.90
41 5 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
Found at i:38123660 original size:42 final size:41
Alignment explanation
Indices: 38123497--38123662 Score: 131
Period size: 42 Copynumber: 3.9 Consensus size: 41
38123487 GGTAACATAC
* *** *
38123497 CAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTATACAAG-TCTTATAT
** * *
38123539 TGATGCCAATAGT-CAAGCTATGGTCTTATACAAAGT-TTCATAT
1 CAATGCC-ATA-TCCCAGATATGGTCTTATAC-AAGTCTT-ATAT
* *
38123582 CAATGCCATATCCCAGATATGGTTTTACACGAAGTCTTATAT
1 CAATGCCATATCCCAGATATGGTCTTATAC-AAGTCTTATAT
*
38123624 -AGATGTCATATCCCAGATATGGTCTTATACATAGTCTTA
1 CA-ATGCCATATCCCAGATATGGTCTTATACA-AGTCTTA
38123663 GTAACCCTAA
Statistics
Matches: 97, Mismatches: 19, Indels: 16
0.73 0.14 0.12
Matches are distributed among these distances:
41 3 0.03
42 63 0.65
43 29 0.30
44 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (41 bp):
CAATGCCATATCCCAGATATGGTCTTATACAAGTCTTATAT
Done.