Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 121 of 352
Found at i:38789924 original size:24 final size:24
Alignment explanation
Indices: 38789897--38789967 Score: 101
Period size: 23 Copynumber: 3.0 Consensus size: 24
38789887 AGGATGTATC
38789897 CGAAAAGGATATTAATGAAAAGGT
1 CGAAAAGGATATTAATGAAAAGGT
* * *
38789921 CGAAAA-AATATCAATGACAAGGT
1 CGAAAAGGATATTAATGAAAAGGT
38789944 CGAAAAGGATATTAATG-AAAGGT
1 CGAAAAGGATATTAATGAAAAGGT
38789967 C
1 C
38789968 CGTATCTCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
23 26 0.65
24 14 0.35
ACGTcount: A:0.49, C:0.08, G:0.23, T:0.20
Consensus pattern (24 bp):
CGAAAAGGATATTAATGAAAAGGT
Found at i:38805785 original size:22 final size:22
Alignment explanation
Indices: 38805743--38805786 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
38805733 ATGTTAAAAT
* *
38805743 TTTTAAAATTTTATTTCAATTA
1 TTTTAAAAATTTAATTCAATTA
38805765 TTTTAAATAATTTAATT-AATTA
1 TTTTAAA-AATTTAATTCAATTA
38805787 AATTTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTTAAAAATTTAATTCAATTA
Found at i:38805812 original size:26 final size:25
Alignment explanation
Indices: 38805764--38805832 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
38805754 TATTTCAATT
* * *
38805764 ATTTTAAATAATTTAATTA-ATTAA
1 ATTTTAAAAAATATATTTAGATTAA
38805788 ATTTTATAAAAATATATTTAGATTAA
1 ATTTTA-AAAAATATATTTAGATTAA
* *
38805814 ATTTTAAAAATTTTATTTA
1 ATTTTAAAAAATATATTTA
38805833 TAGCAAAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
24 6 0.16
25 21 0.55
26 11 0.29
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (25 bp):
ATTTTAAAAAATATATTTAGATTAA
Found at i:38808205 original size:34 final size:34
Alignment explanation
Indices: 38808162--38808231 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
38808152 AGAAATACCA
38808162 CATAGTACTTGATATATTGGAGAATCCTTCTCAT
1 CATAGTACTTGATATATTGGAGAATCCTTCTCAT
38808196 CATAGTACTTGATATATTGGAGAATCCTTCTCAT
1 CATAGTACTTGATATATTGGAGAATCCTTCTCAT
38808230 CA
1 CA
38808232 AGGGTAAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (34 bp):
CATAGTACTTGATATATTGGAGAATCCTTCTCAT
Found at i:38810178 original size:43 final size:42
Alignment explanation
Indices: 38810121--38810269 Score: 129
Period size: 42 Copynumber: 3.5 Consensus size: 42
38810111 AATGCCGACA
* * ** * *
38810121 TCCCAGACTTGGTCTTACATGTAATTTAGTATCGATGCCTCTG
1 TCCCAGACATGGTCTTACACGTAATCAAATA-CGATGCCTATG
* * *
38810164 TCCCAGACAGGGTCTTACACGAAATCAAATACGATGCTTATG
1 TCCCAGACATGGTCTTACACGTAATCAAATACGATGCCTATG
* *
38810206 TCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGAGGCCTGTG
1 TCCCAGACATGGTCTTACACGT-AA--TCAAATACGATGCCTATG
* * *
38810250 TCCCAAACACGATCTTACAC
1 TCCCAGACATGGTCTTACAC
38810270 AATATCTCAG
Statistics
Matches: 86, Mismatches: 17, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
42 29 0.34
43 26 0.30
44 25 0.29
45 6 0.07
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGTAATCAAATACGATGCCTATG
Found at i:38810266 original size:44 final size:41
Alignment explanation
Indices: 38810151--38810269 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 41
38810141 GTAATTTAGT
* *
38810151 ATCGATGCCTCTGTCCCAGACAGGGTCTTACACGAAATCAA
1 ATCGATGCCTATGTCCCAGACACGGTCTTACACGAAATCAA
* *
38810192 ATACGATGCTTATGTCCCAGACATGGTCTTACACGTAAATCTCAA
1 AT-CGATGCCTATGTCCCAGACACGGTCTTACACG-AAA--TCAA
* * * *
38810237 ATCGAGGCCTGTGTCCCAAACACGATCTTACAC
1 ATCGATGCCTATGTCCCAGACACGGTCTTACAC
38810270 AATATCTCAG
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
41 2 0.03
42 29 0.45
43 3 0.05
44 25 0.38
45 6 0.09
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (41 bp):
ATCGATGCCTATGTCCCAGACACGGTCTTACACGAAATCAA
Found at i:38815686 original size:49 final size:47
Alignment explanation
Indices: 38815629--38815804 Score: 157
Period size: 49 Copynumber: 3.7 Consensus size: 47
38815619 GTAAGTTGCA
38815629 GATGCCATGTCCCAGACATGGTCTTACACTGGCAATCATCATCTAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-ATCATCATCTA-GCT
* * *
38815678 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CATATCCATG-T
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-ATCATC--ATCTA-GCT
** * * * *
38815727 CGACACCATGTCCTAGACATGGTATTACACTGACA-CATC-TCGTAGCC
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCATCATCATC-TAGCT
38815774 GATG-CATGTCCCAGACAT-GTCTTACACTGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC
38815805 TTACATCTCG
Statistics
Matches: 102, Mismatches: 19, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
44 11 0.11
45 13 0.13
46 5 0.05
47 1 0.01
48 3 0.03
49 37 0.36
50 32 0.31
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCATCATCATCTAGCT
Found at i:38815822 original size:46 final size:46
Alignment explanation
Indices: 38815629--38815832 Score: 180
Period size: 46 Copynumber: 4.3 Consensus size: 46
38815619 GTAAGTTGCA
* * *
38815629 GATGCCATGTCCCAGACATGGTCTTACACTGGCAATCATCATCTAGGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTA-CATC-TCGAGGCC
* * * * *
38815678 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATGTC
1 GATG-CATGTCCCAGACATGGTCTTACACT-G-GCT-ACATCTCGAGGCC
** * * *
38815728 GACACCATGTCCTAGACATGGTATTACACTGAC-ACATCTCGTA-GCC
1 GA-TGCATGTCCCAGACATGGTCTTACACTGGCTACATCTCG-AGGCC
38815774 GATGCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGC-TACATCTCGAGGCC
38815820 GATGCATGTCCCA
1 GATGCATGTCCCA
38815833 TGAACTATTC
Statistics
Matches: 127, Mismatches: 20, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
44 11 0.09
45 14 0.11
46 34 0.27
47 1 0.01
48 1 0.01
49 31 0.24
50 30 0.24
51 4 0.03
52 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTACATCTCGAGGCC
Found at i:38816057 original size:94 final size:93
Alignment explanation
Indices: 38815942--38816111 Score: 254
Period size: 94 Copynumber: 1.8 Consensus size: 93
38815932 TCTAGGCCGA
* *
38815942 TGCCATGTCCCAGACATGTCTTACACTGGCT-TACAT-CTCGAGGCTGATGCATGTCCCAGACAT
1 TGCCATGTCCCAGACATGTCTTACACTAGCTCT-CATAAT-GAGGCTGATGCATGTCCCAGACAT
38816005 GTCTTACACTAGCACTCGTCTTAATGACGT
64 GTCTTACACTAGCACTCGTCTTAATGACGT
* * *
38816035 TGCCATGTTCCGGACATGGTCTTACACTAGCTCTCATAATGTGGCTGATGCATGTCCCAGACATG
1 TGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGAGGCTGATGCATGTCCCAGACATG
38816100 TCTTACACTAGC
65 TCTTACACTAGC
38816112 TCACGCACGT
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
93 15 0.22
94 52 0.75
95 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (93 bp):
TGCCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGAGGCTGATGCATGTCCCAGACATGT
CTTACACTAGCACTCGTCTTAATGACGT
Found at i:38816111 original size:46 final size:47
Alignment explanation
Indices: 38815891--38816113 Score: 183
Period size: 46 Copynumber: 4.7 Consensus size: 47
38815881 GTAAGTTGCC
* * * * * *
38815891 GATGCCATGTCTCAAACATGGTCTTACACT-GACTATCATCATCTAGGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAG-CTCTCATAATGT-GGCT
* * *
38815940 GATGCCATGTCCCAGACATGTCTTACACTGGCT-TACAT-CTCGAGGCT
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTCT-CATAAT-GTGGCT
* *
38815987 GATG-CATGTCCCAGACATGTCTTACACTAGCACTCGTCTTAA--TGAC-
1 GATGCCATGTCCCAGACATGTCTTACACTAG--CTC-TCATAATGTGGCT
* * *
38816033 GTTGCCATGTTCCGGACATGGTCTTACACTAGCTCTCATAATGTGGCT
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGGCT
38816081 GATG-CATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTC
38816114 ACGCACGTGA
Statistics
Matches: 142, Mismatches: 19, Indels: 29
0.75 0.10 0.15
Matches are distributed among these distances:
45 5 0.04
46 46 0.32
47 38 0.27
48 32 0.23
49 20 0.14
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGGCT
Found at i:38820030 original size:16 final size:15
Alignment explanation
Indices: 38820002--38820034 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
38819992 AAATGAGATT
38820002 TATTTAATTAAAATA
1 TATTTAATTAAAATA
*
38820017 TATTTTATTAAAA-A
1 TATTTAATTAAAATA
38820031 TATT
1 TATT
38820035 ATTCAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTAAAATA
Found at i:38822053 original size:49 final size:49
Alignment explanation
Indices: 38821993--38822258 Score: 225
Period size: 49 Copynumber: 5.6 Consensus size: 49
38821983 GTAAGTTACT
* * * * *
38821993 GATGTCATGTCCCGGATATGGTCTTACACTGGCTATCATCATCGCGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGGCC
*
38822042 GATGCCATGTCCCAGACATGGTCTTATACTAGCTATCATCATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGGCC
*
38822091 GATGCCATGTCCCAGACATGGTCTTACA-TTGAC-A-CATC-TCGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTATCATCATCG-AGGCC
* * * * * * * *
38822137 AAT-ACATGTTCTAGACAT-GTCTTACACT-GGTTTACGTC-TCGAGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTAT-CATCATCGAGGCC
* * * * *
38822183 GATG-CATGTCCCAGGCAT-GTCTTACACTAGC-ACTCGTC-TCAATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCATCATCGAGGCC
38822229 GATGCCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
38822259 GGCTCACACC
Statistics
Matches: 180, Mismatches: 25, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
44 9 0.05
45 14 0.08
46 53 0.29
47 20 0.11
48 13 0.07
49 71 0.39
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAGGCC
Found at i:38822191 original size:46 final size:46
Alignment explanation
Indices: 38822149--38822260 Score: 136
Period size: 46 Copynumber: 2.4 Consensus size: 46
38822139 TACATGTTCT
** *
38822149 AGACATGTCTTACACTGGTTTACGTCTCGAGGTCGATG-CATGTCCC
1 AGACATGTCTTACACTGGACT-CGTCTCAAGGTCGATGCCATGTCCC
* * *
38822195 AGGCATGTCTTACACTAGCACTCGTCTCAATGTCGATGCCATGTCCC
1 AGACATGTCTTACACT-GGACTCGTCTCAAGGTCGATGCCATGTCCC
38822242 AGACATGGTCTTACACTGG
1 AGACAT-GTCTTACACTGG
38822261 CTCACACCAA
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
46 29 0.53
47 16 0.29
48 10 0.18
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (46 bp):
AGACATGTCTTACACTGGACTCGTCTCAAGGTCGATGCCATGTCCC
Found at i:38827419 original size:30 final size:30
Alignment explanation
Indices: 38827384--38827443 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
38827374 CTTAATCAAC
38827384 TCTTCTGCTTTACAGGCTCTTTCAACAAGT
1 TCTTCTGCTTTACAGGCTCTTTCAACAAGT
38827414 TCTTCTGCTTTACAGGCTCTTTCAACAAGT
1 TCTTCTGCTTTACAGGCTCTTTCAACAAGT
38827444 GCTACAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (30 bp):
TCTTCTGCTTTACAGGCTCTTTCAACAAGT
Found at i:38827960 original size:22 final size:22
Alignment explanation
Indices: 38827926--38827968 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
38827916 GTTGTCACGA
*
38827926 TTATCAAAGAATAATTGGTTTCC
1 TTATCAAAGAAT-ATTAGTTTCC
38827949 TTATC-AAGAATATTAGTTTC
1 TTATCAAAGAATATTAGTTTC
38827969 ATCTCTTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 6 0.32
23 5 0.26
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (22 bp):
TTATCAAAGAATATTAGTTTCC
Found at i:38829895 original size:42 final size:46
Alignment explanation
Indices: 38829790--38829946 Score: 133
Period size: 48 Copynumber: 3.4 Consensus size: 46
38829780 GGTTATGTAC
** * * *
38829790 GATCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCATCAATATGT
1 GATCCCATGTAAGACCATAACTGGGACAT-G-ATTGGCATCGATATGT
* ** * *
38829838 AATTTCGTGCAAGACCATAACT-GG-C-T-ATTGGCATCGATATGT
1 GATCCCATGTAAGACCATAACTGGGACATGATTGGCATCGATATGT
* **
38829880 GATCCCATGTCAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATAACTGGGACAT-G-ATTGGCATCGATATGT
38829928 GATCCCATGTAAGACCATA
1 GATCCCATGTAAGACCATA
38829947 TCTAGGATAT
Statistics
Matches: 84, Mismatches: 19, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
42 28 0.33
43 2 0.02
44 1 0.01
45 2 0.02
46 1 0.01
47 2 0.02
48 48 0.57
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (46 bp):
GATCCCATGTAAGACCATAACTGGGACATGATTGGCATCGATATGT
Found at i:38829935 original size:48 final size:48
Alignment explanation
Indices: 38829859--38829967 Score: 173
Period size: 48 Copynumber: 2.2 Consensus size: 48
38829849 AGACCATAAC
* * *
38829859 TGGCTATTGGCATCGATATGTGATCCCATGTCAGACCATGTCTGGGACA
1 TGGC-ATTGGCATCGATATGTGATCCCATGTAAGACCATATCTAGGACA
*
38829908 TGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATCTAGGATA
1 TGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATCTAGGACA
38829956 TGGCATTGGCAT
1 TGGCATTGGCAT
38829968 ACTACCATGT
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
48 52 0.93
49 4 0.07
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (48 bp):
TGGCATTGGCATCGATATGTGATCCCATGTAAGACCATATCTAGGACA
Found at i:38829960 original size:90 final size:90
Alignment explanation
Indices: 38829790--38829961 Score: 229
Period size: 90 Copynumber: 1.9 Consensus size: 90
38829780 GGTTATGTAC
* ** *
38829790 GATCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCATCAATATGTAATTTCGTGCAAGACCA
1 GATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCAATATGTAATCCCATGCAAGACCA
*
38829855 TAACTGGCTATTGGCATCGATATGT
66 TAACTGGATATTGGCATCGATATGT
* * * * *
38829880 GATCCCATGTCAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGACCA
1 GATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCAATATGTAATCCCATGCAAGACCA
*
38829945 TATCTAGGATA-TGGCAT
66 TAACT-GGATATTGGCAT
38829962 TGGCATACTA
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
90 66 0.94
91 4 0.06
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (90 bp):
GATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCAATATGTAATCCCATGCAAGACCA
TAACTGGATATTGGCATCGATATGT
Found at i:38842051 original size:2 final size:2
Alignment explanation
Indices: 38842044--38842081 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
38842034 CAAAACCCTT
38842044 CA CA CA CA CA C- CA -A CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
38842082 TATATATAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:38865202 original size:21 final size:20
Alignment explanation
Indices: 38865173--38865216 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 20
38865163 TATGACCCCT
38865173 GTTTAGTGAAAAATTTTC-TAA
1 GTTTAGTG--AAATTTTCTTAA
*
38865194 GTTTTGTGAAATTTTCTTAA
1 GTTTAGTGAAATTTTCTTAA
38865214 GTT
1 GTT
38865217 CTTGGTTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 8 0.38
20 6 0.29
21 7 0.33
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.50
Consensus pattern (20 bp):
GTTTAGTGAAATTTTCTTAA
Found at i:38865545 original size:20 final size:20
Alignment explanation
Indices: 38865522--38865652 Score: 92
Period size: 20 Copynumber: 6.5 Consensus size: 20
38865512 CAGAGTACAT
38865522 AAGTGCAATCAGGGGTACTG
1 AAGTGCAATCAGGGGTACTG
* *
38865542 AAGTACAATCAGGGGCAC-G
1 AAGTGCAATCAGGGGTACTG
*
38865561 AAAGTGCAATCATGGGTA-TCG
1 -AAGTGCAATCAGGGGTACT-G
* * *
38865582 AAGTACAAACAGGGGCACAT-
1 AAGTGCAATCAGGGGTAC-TG
* *
38865602 AAGTGCAATTAGGGGTACCG
1 AAGTGCAATCAGGGGTACTG
* *
38865622 GAGTACAAAT-AGGGGTAC-G
1 AAGTGC-AATCAGGGGTACTG
38865641 TAAGTGCAATCA
1 -AAGTGCAATCA
38865653 TTCAATAATT
Statistics
Matches: 84, Mismatches: 18, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
19 5 0.06
20 74 0.88
21 4 0.05
22 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.31, T:0.18
Consensus pattern (20 bp):
AAGTGCAATCAGGGGTACTG
Found at i:38865566 original size:40 final size:40
Alignment explanation
Indices: 38865522--38865652 Score: 151
Period size: 40 Copynumber: 3.3 Consensus size: 40
38865512 CAGAGTACAT
38865522 AAGTGCAATCAGGGGTACTGAAGTACAATCAGGGGCACGA
1 AAGTGCAATCAGGGGTACTGAAGTACAATCAGGGGCACGA
* *
38865562 AAGTGCAATCATGGGTA-TCGAAGTACAAACAGGGGCAC-A
1 AAGTGCAATCAGGGGTACT-GAAGTACAATCAGGGGCACGA
* * * * *
38865601 TAAGTGCAATTAGGGGTACCGGAGTACAAAT-AGGGGTACGT
1 -AAGTGCAATCAGGGGTACTGAAGTAC-AATCAGGGGCACGA
38865642 AAGTGCAATCA
1 AAGTGCAATCA
38865653 TTCAATAATT
Statistics
Matches: 76, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
39 2 0.03
40 72 0.95
41 2 0.03
ACGTcount: A:0.36, C:0.16, G:0.31, T:0.18
Consensus pattern (40 bp):
AAGTGCAATCAGGGGTACTGAAGTACAATCAGGGGCACGA
Found at i:38870150 original size:36 final size:36
Alignment explanation
Indices: 38870110--38870182 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
38870100 TGGGTCACAT
**
38870110 TCGTAAATGGATGTATATTCTCACTTAGTATAGAAA
1 TCGTAAATAAATGTATATTCTCACTTAGTATAGAAA
*
38870146 TCGTAAATAAATGTATTTTCTCACTTAGTATAGAAA
1 TCGTAAATAAATGTATATTCTCACTTAGTATAGAAA
38870182 T
1 T
38870183 GACTTGAGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (36 bp):
TCGTAAATAAATGTATATTCTCACTTAGTATAGAAA
Found at i:38873779 original size:47 final size:47
Alignment explanation
Indices: 38873725--38874012 Score: 432
Period size: 47 Copynumber: 6.1 Consensus size: 47
38873715 TTAGGATTTT
** * *
38873725 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
38873772 ATGTGATGAATGTGAACATGCATATATGTGACAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
38873819 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
38873866 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
38873913 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
38873960 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
38874007 ATGTGA
1 ATGTGA
38874013 AATATGTATG
Statistics
Matches: 217, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 217 1.00
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:38873968 original size:25 final size:24
Alignment explanation
Indices: 38873842--38873964 Score: 73
Period size: 24 Copynumber: 5.2 Consensus size: 24
38873832 GAGCATGCAT
38873842 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* **
38873866 ATGTGGTGAATATGAAC--AT-G-CA
1 ATGT-GTG-ATAAGGCCGAATGGCCA
*
38873888 TATATGTGATAAGGCCGAATGGCCA
1 -ATGTGTGATAAGGCCGAATGGCCA
* * *
38873913 ATGTGATGA-ATGTG-AGCAT-G-CA
1 ATGTG-TGATAAG-GCCGAATGGCCA
38873935 TATGTGTGATAAGGCCGAATGGCCA
1 -ATGTGTGATAAGGCCGAATGGCCA
38873960 ATGTG
1 ATGTG
38873965 GTGAATATGA
Statistics
Matches: 71, Mismatches: 14, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
21 5 0.07
22 11 0.15
23 17 0.24
24 22 0.31
25 11 0.15
26 5 0.07
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:38874140 original size:98 final size:96
Alignment explanation
Indices: 38873983--38874166 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
38873973 GAACATGCAT
*
38873983 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
38874048 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
38874079 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
* *
38874143 TGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
38874167 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.02
98 52 0.64
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:38874182 original size:50 final size:48
Alignment explanation
Indices: 38873982--38874166 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
38873972 TGAACATGCA
38873982 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
38874030 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
38874078 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* *
38874128 TATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
38874167 GGCGATGTGC
Statistics
Matches: 127, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
47 1 0.01
48 80 0.63
49 4 0.03
50 41 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:38874420 original size:37 final size:37
Alignment explanation
Indices: 38874312--38874420 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
38874302 GCAAATATAT
*
38874312 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
38874349 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * *
38874386 TCCGGGTAAAACCTGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
38874421 CGTCTGAGCT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:38876625 original size:78 final size:79
Alignment explanation
Indices: 38876479--38876705 Score: 226
Period size: 78 Copynumber: 2.9 Consensus size: 79
38876469 GGTTTAAACC
* * * * * * * *
38876479 CCGAATTCAATCACCAACACAAAGCCTACGGGA-CTTTAAGCCCGGATATAGTACCAGTACGAAA
1 CCGAATACAAT-ACCAGCACGAAGCCTGC-GGATCTTTAAGCCCGGATACAATTCCAGCAC-AAA
38876543 -CCTGCGGACCTTAAGT
63 GCCTGCGGACCTTAAGT
* * * * *
38876559 CCGAATATAGTACCAGTACGAAGCCTGCGGATC-TTAAGTCTGGATACAATTCCAGCACAAAGCC
1 CCGAATACAATACCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATTCCAGCACAAAGCC
38876623 TGCGGACCTTAAGT
66 TGCGGACCTTAAGT
* * * * * * *
38876637 CCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAATTTCAGCATATAGCC
1 CCGAATACAATACCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATTCCAGCACAAAGCC
38876702 TGCG
66 TGCG
38876706 AGTCTTTAAG
Statistics
Matches: 119, Mismatches: 25, Indels: 7
0.79 0.17 0.05
Matches are distributed among these distances:
77 3 0.03
78 65 0.55
79 43 0.36
80 8 0.07
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (79 bp):
CCGAATACAATACCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATTCCAGCACAAAGCC
TGCGGACCTTAAGT
Found at i:38876694 original size:40 final size:40
Alignment explanation
Indices: 38876500--38876723 Score: 188
Period size: 39 Copynumber: 5.7 Consensus size: 40
38876490 CACCAACACA
* * * *
38876500 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACG
1 AAGCCTGCGGGACTTTAAGCCCGGATATAATTCCAGCACG
* * * * * * *
38876540 AAACCTGC-GGACCTTAAGTCCGAATATAGTACCAGTACG
1 AAGCCTGCGGGACTTTAAGCCCGGATATAATTCCAGCACG
* * * *
38876579 AAGCCTGC-GGA-TCTTAAGTCTGGATACAATTCCAGCACA
1 AAGCCTGCGGGACT-TTAAGCCCGGATATAATTCCAGCACG
* * *
38876618 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGGACTTTAAGCCCGGATATAATTCCAGCACG
* * *
38876657 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTTCAGCA-T
1 AAGCCTGCGGGACTTTAAGCCCGGATATAATTCCAGCACG
* *
38876696 ATAGCCTGCGAGTCTTTAAGCCCGGATA
1 A-AGCCTGCGGGACTTTAAGCCCGGATA
38876724 CACATCAAAT
Statistics
Matches: 156, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
39 101 0.65
40 55 0.35
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (40 bp):
AAGCCTGCGGGACTTTAAGCCCGGATATAATTCCAGCACG
Found at i:38879618 original size:79 final size:81
Alignment explanation
Indices: 38879478--38879662 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
38879468 TTGAATGATG
*
38879478 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
38879542 TGTGCGAGATACTA-A
66 TGTGCGACATACTATA
* * * *
38879557 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCTGG-TTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCC-GGACTAAGAT-CCGAAGGC
*
38879618 ATTTGTGCGACTTACTATA
63 ATTTGTGCGACATACTATA
* *
38879637 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
38879663 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 55 0.60
80 35 0.38
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGACATACTATA
Found at i:38879676 original size:40 final size:39
Alignment explanation
Indices: 38879479--38879681 Score: 182
Period size: 40 Copynumber: 5.1 Consensus size: 39
38879469 TGAATGATGT
* * *
38879479 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAA
* *
38879519 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-A
38879559 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
* * *
38879597 TCCTGGTTAAGTCCCGAAGGCATTTGTGCGACTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTACTATAA
* ** *
38879638 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAA
38879678 CCGG
1 CCGG
38879682 TTAAATTCCG
Statistics
Matches: 137, Mismatches: 16, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
39 36 0.26
40 90 0.66
41 11 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAA
Found at i:38879684 original size:79 final size:79
Alignment explanation
Indices: 38879531--38879695 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
38879521 GGACTAAGAT
* * **
38879531 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGACATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
38879596 ATCCTGGTTAAGTC
66 ATCCTGGTTAAATC
* *
38879610 CCGAAGGCATTTGTGCGACTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGACATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
38879673 TATATCC-GGTTAAATT
63 TAAATCCTGGTTAAATC
38879689 CCGAAGG
1 CCGAAGG
38879696 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGACATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCTGGTTAAATC
Found at i:38883112 original size:15 final size:15
Alignment explanation
Indices: 38883074--38883103 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
38883064 ATCTCACCCC
38883074 AAATCAGATACAAAA
1 AAATCAGATACAAAA
38883089 AAATCAGATACAAAA
1 AAATCAGATACAAAA
38883104 TTATCAGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.13, G:0.07, T:0.13
Consensus pattern (15 bp):
AAATCAGATACAAAA
Found at i:38888236 original size:17 final size:17
Alignment explanation
Indices: 38888211--38888251 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
38888201 TTTTTGTCCA
*
38888211 AAAACTTAGAAATTGGG
1 AAAATTTAGAAATTGGG
38888228 AAAATTTAGAAATTGGG
1 AAAATTTAGAAATTGGG
38888245 AAAATTT
1 AAAATTT
38888252 CTCTTTAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.49, C:0.02, G:0.20, T:0.29
Consensus pattern (17 bp):
AAAATTTAGAAATTGGG
Found at i:38900126 original size:46 final size:44
Alignment explanation
Indices: 38899992--38900154 Score: 166
Period size: 46 Copynumber: 3.5 Consensus size: 44
38899982 GTGCTAATGC
* * * *
38899992 AAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGGCCAATGT
1 AAGACATGTCTGGGACATGCATC-GCCTCGA-GATGAAGCCAGTGT
* ** * *
38900037 AAGACCATGCCTGGGACATGGCATCGGTATTGAGACGAGAGCCAGTGT
1 AAGA-CATGTCTGGGACAT-GCATC-GCCTCGAGATGA-AGCCAGTGT
38900085 AAGACATGTCTGGGACATGCATCGCCCTCGAGATGTAAGCCAGTGT
1 AAGACATGTCTGGGACATGCATCG-CCTCGAGATG-AAGCCAGTGT
38900131 AAGACATGTCTGGGACATGCATCG
1 AAGACATGTCTGGGACATGCATCG
38900155 GCTACAAAAG
Statistics
Matches: 97, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
45 5 0.05
46 57 0.59
47 23 0.24
48 12 0.12
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (44 bp):
AAGACATGTCTGGGACATGCATCGCCTCGAGATGAAGCCAGTGT
Found at i:38900229 original size:50 final size:47
Alignment explanation
Indices: 38900169--38900299 Score: 147
Period size: 50 Copynumber: 2.7 Consensus size: 47
38900159 CAAAAGGTGT
38900169 TAGTGTAAGACCATGTTTGGGACATGGCATCGACACGGATATGT-GAGAG
1 TAGTGTAAGACCATGTTTGGGACATGGCATCGACAC-GAT-T-TCGAGAG
* * * *
38900218 CTAGTGTAAGACCATGTTTGGGATATGGCATCAGCCTCGATTTCGATAG
1 -TAGTGTAAGACCATGTTTGGGACATGGCATC-GACACGATTTCGAGAG
* *
38900267 TCAGTTTAAGACCATGTCTGGGACATGGCATCG
1 T-AGTGTAAGACCATGTTTGGGACATGGCATCG
38900300 GCATTATACC
Statistics
Matches: 71, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
48 3 0.04
49 32 0.45
50 33 0.46
51 3 0.04
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (47 bp):
TAGTGTAAGACCATGTTTGGGACATGGCATCGACACGATTTCGAGAG
Found at i:38904644 original size:40 final size:40
Alignment explanation
Indices: 38904589--38904806 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
38904579 CGGATGATAA
* * * * *
38904589 CCGGGATAAGTCCCGAAGCCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
38904629 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
38904669 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
38904709 CCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * **
38904749 CCGGGCTATGTCCCGAAGGCATTCGACCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
38904789 CC-GGTTAAGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
38904807 TACCTGGCTT
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 17 0.11
40 142 0.89
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:38912437 original size:40 final size:40
Alignment explanation
Indices: 38912381--38912563 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
38912371 CGGATGATAA
* * * *
38912381 CCGGGCTAAGTCCCGAAGGAATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
38912421 TCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
38912461 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
38912501 CCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
38912541 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
38912564 CGAGTGAGTA
Statistics
Matches: 128, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.01
40 127 0.99
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:38912583 original size:40 final size:40
Alignment explanation
Indices: 38912381--38912584 Score: 250
Period size: 40 Copynumber: 5.1 Consensus size: 40
38912371 CGGATGATAA
* * * * *
38912381 CCGGGCTAAGTCCCGAAGGAATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
*
38912421 TCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
38912461 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * *
38912501 CCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * *
38912541 CCGGGCTATGTCCCGAAGGCATTCGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
38912581 CCGG
1 CCGG
38912585 TTAAATCCCA
Statistics
Matches: 144, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
39 3 0.02
40 141 0.98
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:38916875 original size:51 final size:49
Alignment explanation
Indices: 38916809--38916946 Score: 161
Period size: 51 Copynumber: 2.8 Consensus size: 49
38916799 TGTGAGGTTG
* *
38916809 CATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCGAAAATTGTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATTG-G-TCA
* *** *** *
38916860 CATGTGTAATACTAAGTGCAGGCTACTACATGTACCAGACTGTTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATTGGTCA
38916909 CATGTGTAGTACTAAGTGCA-GCTACTATGCGTACCAGA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
38916947 TAGCTTCGGC
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
48 15 0.21
49 21 0.29
50 1 0.01
51 36 0.49
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATTGGTCA
Found at i:38927432 original size:93 final size:93
Alignment explanation
Indices: 38927322--38927492 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
38927312 GCCCCTAAGT
* *
38927322 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
38927387 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
38927415 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
38927480 CGAGTTCGGATGC
66 CGAGTTCGGATGC
38927493 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:38927489 original size:46 final size:46
Alignment explanation
Indices: 38927317--38927489 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
38927307 AACCCGCCCC
* * * *
38927317 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
38927363 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
38927411 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
38927456 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
38927490 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:38932984 original size:40 final size:40
Alignment explanation
Indices: 38932929--38933071 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
38932919 TGGATGATAA
* *
38932929 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-TAT
38932969 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* *
38933009 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* *
38933049 CCCGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
38933072 CGAGCGAGTA
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 95 0.99
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:38933079 original size:40 final size:40
Alignment explanation
Indices: 38932929--38933091 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
38932919 TGGATGATAA
* * *
38932929 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
38932969 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
38933009 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
38933049 CCCGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
38933089 CCG
1 CCG
38933092 ATTAAATCCT
Statistics
Matches: 112, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 3 0.03
40 109 0.97
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:38937037 original size:30 final size:30
Alignment explanation
Indices: 38937003--38937063 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
38936993 TAAAAAATTG
38937003 ACATAATATA-AAATTTAACTTTTAATTTTA
1 ACATAATATATAAATTT-ACTTTTAATTTTA
* * *
38937033 ACATATTATATTAATTTAGTTTTAATTTTA
1 ACATAATATATAAATTTACTTTTAATTTTA
38937063 A
1 A
38937064 AAAATTAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.51
Consensus pattern (30 bp):
ACATAATATATAAATTTACTTTTAATTTTA
Found at i:38940373 original size:27 final size:27
Alignment explanation
Indices: 38940343--38940403 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
38940333 ATCATTGGTC
38940343 AAGAATTGTATCACTTGATTTTTGAAA
1 AAGAATTGTATCACTTGATTTTTGAAA
38940370 AAGAATTGTATCACTTGATTTTTGAAA
1 AAGAATTGTATCACTTGATTTTTGAAA
38940397 AAGAATT
1 AAGAATT
38940404 AGATGAATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AAGAATTGTATCACTTGATTTTTGAAA
Found at i:38942827 original size:24 final size:24
Alignment explanation
Indices: 38942799--38942846 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
38942789 GTGTAGGGCT
*
38942799 GTAAAACTATTTTCAAAGTTCCAA
1 GTAAAACTATTGTCAAAGTTCCAA
38942823 GTAAAACTATTGTCAAAGTTCCAA
1 GTAAAACTATTGTCAAAGTTCCAA
38942847 TACCTAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (24 bp):
GTAAAACTATTGTCAAAGTTCCAA
Found at i:38949787 original size:22 final size:20
Alignment explanation
Indices: 38949745--38949811 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
38949735 ATAAATAAAT
*
38949745 GAAATAAAGATAGAAAAAGA
1 GAAATAAAGAGAGAAAAAGA
*
38949765 GAAAGTAAAGAGACGAAATAGA
1 GAAA-TAAAGAGA-GAAAAAGA
* *
38949787 GAAGA-ATAGGGGAGAAAAAGA
1 GAA-ATA-AAGAGAGAAAAAGA
38949808 GAAA
1 GAAA
38949812 AGAAACAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
20 5 0.13
21 18 0.47
22 14 0.37
23 1 0.03
ACGTcount: A:0.63, C:0.01, G:0.28, T:0.07
Consensus pattern (20 bp):
GAAATAAAGAGAGAAAAAGA
Found at i:38953451 original size:48 final size:47
Alignment explanation
Indices: 38953395--38953630 Score: 246
Period size: 48 Copynumber: 4.9 Consensus size: 47
38953385 GCTACATTAT
38953395 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
38953442 CGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTAT-AGA
1 -GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA--T-TGAGA
* * * * ** *
38953492 G-GCGTCAGTGTAAGACCATGTCTGGGATATGGCATCCGCACGGATATGT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG--A-GA
* * * *
38953541 GAGAGCTAGTGTAATACCATGTCTGGGCCATGGCATCGAC-TTGATG-
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GA
* *
38953587 GATGAGCCAATGTAAGACCATGTTTGGGACATGGCATCGGCATT
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
38953631 ATACCCTATG
Statistics
Matches: 155, Mismatches: 23, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
46 2 0.01
47 35 0.23
48 79 0.51
49 4 0.03
50 34 0.22
51 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
Found at i:38961166 original size:24 final size:24
Alignment explanation
Indices: 38961103--38961167 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
38961093 AATAATAGTA
*
38961103 AATGATAGAAAAAAATAATTAATT
1 AATGATAGAAAAAAATAAATAATT
* *
38961127 AATTATA-AAAACAAATAAATGATT
1 AATGATAGAAAA-AAATAAATAATT
* *
38961151 GATGATAGAATAAAATA
1 AATGATAGAAAAAAATA
38961168 GTAAATTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 4 0.12
24 26 0.79
25 3 0.09
ACGTcount: A:0.62, C:0.02, G:0.09, T:0.28
Consensus pattern (24 bp):
AATGATAGAAAAAAATAAATAATT
Found at i:38961442 original size:20 final size:20
Alignment explanation
Indices: 38961417--38961456 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
38961407 CTAGTGAATG
*
38961417 TTAGTTGTCATATATTAGAA
1 TTAGTTATCATATATTAGAA
*
38961437 TTAGTTATTATATATTAGAA
1 TTAGTTATCATATATTAGAA
38961457 CAGGAGGGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (20 bp):
TTAGTTATCATATATTAGAA
Found at i:38962668 original size:4 final size:4
Alignment explanation
Indices: 38962659--38962683 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
38962649 CATATATTTG
38962659 TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA T
38962684 ATCTTCAGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:38964449 original size:43 final size:43
Alignment explanation
Indices: 38964396--38964480 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
38964386 AAGGATTAAA
38964396 TTAAATTTTTATAATTTTAGAGGTGGTTAAAATATAATTTTAC
1 TTAAATTTTTATAATTTTAGAGGTGGTTAAAATATAATTTTAC
38964439 TTAAATTTTTATAATTTTAGAGGTGGTTAAAATATAATTTTA
1 TTAAATTTTTATAATTTTAGAGGTGGTTAAAATATAATTTTA
38964481 TTTTTATTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.38, C:0.01, G:0.12, T:0.49
Consensus pattern (43 bp):
TTAAATTTTTATAATTTTAGAGGTGGTTAAAATATAATTTTAC
Found at i:38966671 original size:82 final size:83
Alignment explanation
Indices: 38966518--38966683 Score: 262
Period size: 82 Copynumber: 2.0 Consensus size: 83
38966508 GTTAACGAAC
* *
38966518 ATGAAACAATGAACGGATACATGAAAGATACTCGGAACACCCTAAATAGTGTGCACAAGCACGAA
1 ATGAAACAATGAACGGATACATGAAAAATACTCGGAACACCCTAAATAGTGTGCACAAGCACCAA
** *
38966583 GTGAATAGCAGTACTCCA
66 CCGAATAGCAATACTCCA
* *
38966601 ATGAAACAATGACCGGATACATGAAAAATACTC-GAACACTCTAAATAGTGTGCACAAGCACCAA
1 ATGAAACAATGAACGGATACATGAAAAATACTCGGAACACCCTAAATAGTGTGCACAAGCACCAA
38966665 CCGAATAGCAATACTCCA
66 CCGAATAGCAATACTCCA
38966683 A
1 A
38966684 AGTAAGGTTG
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
82 45 0.59
83 31 0.41
ACGTcount: A:0.43, C:0.22, G:0.17, T:0.17
Consensus pattern (83 bp):
ATGAAACAATGAACGGATACATGAAAAATACTCGGAACACCCTAAATAGTGTGCACAAGCACCAA
CCGAATAGCAATACTCCA
Found at i:38966833 original size:7 final size:7
Alignment explanation
Indices: 38966823--38966852 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
38966813 TTAATAAATA
38966823 ATATTAT
1 ATATTAT
38966830 ATATTAT
1 ATATTAT
38966837 ATATTAT
1 ATATTAT
38966844 ATATTAT
1 ATATTAT
38966851 AT
1 AT
38966853 GTATTAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
ATATTAT
Found at i:38968187 original size:29 final size:29
Alignment explanation
Indices: 38968145--38968202 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
38968135 ATAGTCTATT
38968145 CCTCTTGTATTGAATTCAAATTTTCGACA
1 CCTCTTGTATTGAATTCAAATTTTCGACA
38968174 CCTCTTGTATTGAATTCAAATTTTCGACA
1 CCTCTTGTATTGAATTCAAATTTTCGACA
38968203 TAGTGAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (29 bp):
CCTCTTGTATTGAATTCAAATTTTCGACA
Found at i:38971484 original size:26 final size:26
Alignment explanation
Indices: 38971454--38971509 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
38971444 TGAAATTCCC
38971454 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
38971480 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
38971506 ATCA
1 ATCA
38971510 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:38975763 original size:13 final size:13
Alignment explanation
Indices: 38975730--38975767 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
38975720 GATTTCTTTG
*
38975730 AAATTTATTTTCA
1 AAATTTTTTTTCA
38975743 AAAGTTTTTTTTCA
1 AAA-TTTTTTTTCA
38975757 AAATTTTTTTT
1 AAATTTTTTTT
38975768 TTTTTGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.61
Consensus pattern (13 bp):
AAATTTTTTTTCA
Found at i:38978495 original size:26 final size:26
Alignment explanation
Indices: 38978465--38978520 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
38978455 TGAAATTCCC
38978465 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
38978491 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
38978517 ATCA
1 ATCA
38978521 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:38982851 original size:22 final size:22
Alignment explanation
Indices: 38982826--38982867 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
38982816 CATGATTCTA
38982826 AACTCT-AAATCATCAAGAAACT
1 AACTCTAAAAT-ATCAAGAAACT
*
38982848 AACTTTAAAATATCAAGAAA
1 AACTCTAAAATATCAAGAAA
38982868 TCAACAGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.55, C:0.17, G:0.05, T:0.24
Consensus pattern (22 bp):
AACTCTAAAATATCAAGAAACT
Found at i:38992496 original size:15 final size:15
Alignment explanation
Indices: 38992476--38992506 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
38992466 AAAGTGATAA
38992476 TAGATATGCAATTTG
1 TAGATATGCAATTTG
38992491 TAGATATGCAATTTG
1 TAGATATGCAATTTG
38992506 T
1 T
38992507 TGATTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42
Consensus pattern (15 bp):
TAGATATGCAATTTG
Found at i:38998116 original size:56 final size:56
Alignment explanation
Indices: 38998030--38998205 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
38998020 ACAAGGGATG
*
38998030 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
38998086 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
38998142 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
38998198 ATGGGCAA
1 ATGGGCAA
38998206 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:38999181 original size:39 final size:41
Alignment explanation
Indices: 38999080--38999263 Score: 197
Period size: 39 Copynumber: 4.6 Consensus size: 41
38999070 TCGAATGATG
* *
38999080 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA
*
38999120 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATA
* *
38999160 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
38999199 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
38999238 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
38999264 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
38 1 0.01
39 67 0.54
40 43 0.35
41 12 0.10
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:38999216 original size:79 final size:80
Alignment explanation
Indices: 38999080--38999261 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
38999070 TCGAATGATG
* *
38999080 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCA-T
38999144 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * * **
38999159 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
38999221 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* *
38999238 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
38999262 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 24 0.27
79 47 0.53
80 17 0.19
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
GTGCGAGATACTATA
Found at i:38999270 original size:79 final size:78
Alignment explanation
Indices: 38999133--38999286 Score: 188
Period size: 79 Copynumber: 2.0 Consensus size: 78
38999123 GGACTAAGAT
* **
38999133 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTA-CTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAG-TAGCTA
38999197 AATCCGGGTTAAGTC
65 AATCC-GGTTAAGTC
* * *
38999212 CCGAAGGCA-TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTAGCT
*
38999275 ATATCCGGTTAA
64 AAATCCGGTTAA
38999287 ATTCGAAGGT
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
77 2 0.03
78 30 0.46
79 33 0.51
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTAGCTAA
ATCCGGTTAAGTC
Found at i:39005823 original size:56 final size:56
Alignment explanation
Indices: 39005697--39005871 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
39005687 ACAAGGGATG
39005697 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAA-AATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
39005752 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
39005808 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
39005864 ATGGGCAA
1 ATGGGCAA
39005872 TAAACTAATA
Statistics
Matches: 119, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
55 40 0.34
56 79 0.66
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:39006876 original size:79 final size:81
Alignment explanation
Indices: 39006740--39006922 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
39006730 TCGAATGATG
* *
39006740 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
39006804 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * **
39006819 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-AAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
39006881 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
39006899 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
39006923 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:39006931 original size:40 final size:39
Alignment explanation
Indices: 39006741--39006924 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
39006731 CGAATGATGT
* * * *
39006741 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
39006781 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
39006821 CCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
39006859 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
39006900 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
39006925 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:39006957 original size:79 final size:79
Alignment explanation
Indices: 39006793--39006949 Score: 185
Period size: 79 Copynumber: 2.0 Consensus size: 79
39006783 GGACTAAGAT
* **
39006793 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAA
*
39006858 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
39006872 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACAAGTTA-C
*
39006935 TATATCC-GGTTAAAT
63 TAAATCCGGGTTAAAT
39006950 TTCGAAGGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 41 0.62
80 23 0.35
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAA
ATCCGGGTTAAATC
Found at i:39009725 original size:16 final size:17
Alignment explanation
Indices: 39009698--39009730 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
39009688 CAATGTTTAT
39009698 ATGAATTATTATAAAAG
1 ATGAATTATTATAAAAG
*
39009715 ATGAA-TATTATTAAAG
1 ATGAATTATTATAAAAG
39009731 TAGGTTCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (17 bp):
ATGAATTATTATAAAAG
Found at i:39012459 original size:26 final size:26
Alignment explanation
Indices: 39012403--39012459 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
39012393 ATGCATGATA
39012403 AAATAAAACATATATAACATCGACAT
1 AAATAAAACATATATAACATCGACAT
* *
39012429 TAATAAATCATAATATTAACAT-G-CAT
1 AAATAAAACAT-ATA-TAACATCGACAT
39012455 AAATA
1 AAATA
39012460 GTAATAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 16 0.62
27 4 0.15
28 6 0.23
ACGTcount: A:0.56, C:0.12, G:0.04, T:0.28
Consensus pattern (26 bp):
AAATAAAACATATATAACATCGACAT
Found at i:39012500 original size:3 final size:3
Alignment explanation
Indices: 39012492--39012538 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
39012482 TAATACAAAT
39012492 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
39012539 TAATAATAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:39012543 original size:3 final size:3
Alignment explanation
Indices: 39012537--39012575 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
39012527 CAACAACAAC
39012537 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
39012576 CTAAATTTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:39012618 original size:61 final size:61
Alignment explanation
Indices: 39012552--39012699 Score: 278
Period size: 61 Copynumber: 2.4 Consensus size: 61
39012542 TAATAATAAT
39012552 AATAATAATAATAATAATAATAATCTAAATTTTGAAATTACATAAAAGTAATAAACAAATA
1 AATAATAATAATAATAATAATAATCTAAATTTTGAAATTACATAAAAGTAATAAACAAATA
39012613 AATAATAATAATAATAATAATAATCTAAATTTTGAAATTACATAAAAGTAATAAACAAATA
1 AATAATAATAATAATAATAATAATCTAAATTTTGAAATTACATAAAAGTAATAAACAAATA
39012674 AATAATGAAATAATAATAATAATAAT
1 AATAAT--AATAATAATAATAATAAT
39012700 AAAGGAAAAA
Statistics
Matches: 85, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
61 67 0.79
63 18 0.21
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.31
Consensus pattern (61 bp):
AATAATAATAATAATAATAATAATCTAAATTTTGAAATTACATAAAAGTAATAAACAAATA
Found at i:39012719 original size:61 final size:60
Alignment explanation
Indices: 39012552--39012720 Score: 171
Period size: 61 Copynumber: 2.8 Consensus size: 60
39012542 TAATAATAAT
**** * *
39012552 AATAATAATAATAATAATAATAATCTAAATTTTGAAATTACATAAAAGTAATAAACAAATA
1 AATAATAATAATAATAATAATAA-CTAAATGGAAAAATAAAATAAAAGTAATAAACAAATA
**** * *
39012613 AATAATAATAATAATAATAATAATCTAAATTTTGAAATTACATAAAAGTAATAAACAAATA
1 AATAATAATAATAATAATAATAA-CTAAATGGAAAAATAAAATAAAAGTAATAAACAAATA
39012674 AATAATGAAATAATAATAATAATAA-TAAA-GGAAAAATAAAAATAAAA
1 AATAAT--AATAATAATAATAATAACTAAATGGAAAAAT-AAAATAAAA
39012721 CAAGCCAATT
Statistics
Matches: 99, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
60 4 0.04
61 78 0.79
63 17 0.17
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (60 bp):
AATAATAATAATAATAATAATAACTAAATGGAAAAATAAAATAAAAGTAATAAACAAATA
Found at i:39012809 original size:12 final size:12
Alignment explanation
Indices: 39012781--39012830 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
39012771 AAAATTGAAC
39012781 TTAAAT-AAATAA
1 TTAAATAAAAT-A
*
39012793 ATAAATAAAATA
1 TTAAATAAAATA
*
39012805 TTAAATGAAATA
1 TTAAATAAAATA
39012817 TTAAATAAAATA
1 TTAAATAAAATA
39012829 TT
1 TT
39012831 TTTTAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
12 29 0.88
13 4 0.12
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (12 bp):
TTAAATAAAATA
Found at i:39012821 original size:24 final size:24
Alignment explanation
Indices: 39012781--39012830 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
39012771 AAAATTGAAC
39012781 TTAAATAAATAAATAAATAAAATA
1 TTAAATAAATAAATAAATAAAATA
*
39012805 TTAAATGAAAT-ATTAAATAAAATA
1 TTAAAT-AAATAAATAAATAAAATA
39012829 TT
1 TT
39012831 TTTTAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (24 bp):
TTAAATAAATAAATAAATAAAATA
Found at i:39017339 original size:15 final size:14
Alignment explanation
Indices: 39017316--39017351 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 14
39017306 AGGCGGAAGC
39017316 AAAAAAAAATAAAA
1 AAAAAAAAATAAAA
39017330 AAAAATAAAATAAAA
1 AAAAA-AAAATAAAA
39017345 AATAAAA
1 AA-AAAA
39017352 TACCTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 12 0.60
16 3 0.15
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (14 bp):
AAAAAAAAATAAAA
Found at i:39017352 original size:12 final size:12
Alignment explanation
Indices: 39017319--39017353 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
39017309 CGGAAGCAAA
39017319 AAAAAAT-AAA-
1 AAAAAATAAAAT
39017329 AAAAAATAAAAT
1 AAAAAATAAAAT
39017341 AAAAAATAAAAT
1 AAAAAATAAAAT
39017353 A
1 A
39017354 CCTTTAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 7 0.30
11 3 0.13
12 13 0.57
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:39018750 original size:31 final size:30
Alignment explanation
Indices: 39018715--39018779 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 30
39018705 GCAATTACGC
*
39018715 ACATGAAACTTGAATTGTGGTTC-ATATGTAT
1 ACATGAAACTTGAATT-TGATTCAAT-TGTAT
* *
39018746 ACATGAAATTTTAATTTGATTCAATTGTAT
1 ACATGAAACTTGAATTTGATTCAATTGTAT
39018776 ACAT
1 ACAT
39018780 TTATTTTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 14 0.47
31 16 0.53
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (30 bp):
ACATGAAACTTGAATTTGATTCAATTGTAT
Found at i:39018777 original size:30 final size:31
Alignment explanation
Indices: 39018715--39018779 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
39018705 GCAATTACGC
*
39018715 ACATGAAACTTGAATTGTGGTTCATATGTAT
1 ACATGAAACTTGAATTGTGATTCATATGTAT
* *
39018746 ACATGAAATTTTAATT-TGATTCA-ATTGTAT
1 ACATGAAACTTGAATTGTGATTCATA-TGTAT
39018776 ACAT
1 ACAT
39018780 TTATTTTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 1 0.03
30 15 0.50
31 14 0.47
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (31 bp):
ACATGAAACTTGAATTGTGATTCATATGTAT
Found at i:39018937 original size:31 final size:31
Alignment explanation
Indices: 39018896--39018967 Score: 110
Period size: 31 Copynumber: 2.3 Consensus size: 31
39018886 TAATCTAAAT
* *
39018896 TTCATATATAACATTGC-ATATTAGTTCAAAG
1 TTCATGTATAACATT-CAACATTAGTTCAAAG
39018927 TTCATGTATAACATTCAACATTAGTTCAAAG
1 TTCATGTATAACATTCAACATTAGTTCAAAG
39018958 TTCATGTATA
1 TTCATGTATA
39018968 GTTTTAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 1 0.03
31 37 0.97
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.39
Consensus pattern (31 bp):
TTCATGTATAACATTCAACATTAGTTCAAAG
Found at i:39019675 original size:128 final size:127
Alignment explanation
Indices: 39019443--39019688 Score: 366
Period size: 128 Copynumber: 1.9 Consensus size: 127
39019433 TAATTCCAGA
* * * *
39019443 TTCTTTAATTGTTTTAGATTGAAGAAAAAGTGTAAAAAGGTGAGGCCTTTGGCTCGATAGAATGC
1 TTCTCTAATTGTTTTAGATTGAAGAAAAAATATAAAAAGGTGAGGCCTTTGACTCGATAGAATGC
*** * *
39019508 ATTGCAGTCAGGAGTGTTGAAGTTAATGTTGATGCCTCTAGTGCAAAAATGTTGGCAATTAG
66 ACCACAGTCACGAGTGTTGAAGTTAATGTCGATGCCTCTAGTGCAAAAATGTTGGCAATTAG
* *
39019570 TTCTCTAATTGTTTTAGATTGAAGAAAAAATATAAAAAGGGTGAGGCCTTTGACTCGATGGAGTG
1 TTCTCTAATTGTTTTAGATTGAAGAAAAAATATAAAAA-GGTGAGGCCTTTGACTCGATAGAATG
* *
39019635 CACCACAGTTACGAGTGTTGAAGTTAATGTCGATGCCTCTAGTGCAAAAGTGTT
65 CACCACAGTCACGAGTGTTGAAGTTAATGTCGATGCCTCTAGTGCAAAAATGTT
39019689 AGCGATTAAG
Statistics
Matches: 105, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
127 35 0.33
128 70 0.67
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (127 bp):
TTCTCTAATTGTTTTAGATTGAAGAAAAAATATAAAAAGGTGAGGCCTTTGACTCGATAGAATGC
ACCACAGTCACGAGTGTTGAAGTTAATGTCGATGCCTCTAGTGCAAAAATGTTGGCAATTAG
Found at i:39026826 original size:12 final size:12
Alignment explanation
Indices: 39026809--39026850 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
39026799 TATAAAAAGC
39026809 AACAATAAGCAT
1 AACAATAAGCAT
* *
39026821 AACAATAAACAC
1 AACAATAAGCAT
39026833 AACAATAAGCAT
1 AACAATAAGCAT
39026845 AACAAT
1 AACAAT
39026851 GTATTAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.62, C:0.19, G:0.05, T:0.14
Consensus pattern (12 bp):
AACAATAAGCAT
Found at i:39027046 original size:7 final size:7
Alignment explanation
Indices: 39027036--39027061 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
39027026 ATGTGAGTCA
39027036 AGAAATG
1 AGAAATG
39027043 AGAAATG
1 AGAAATG
39027050 AGAAATG
1 AGAAATG
39027057 AGAAA
1 AGAAA
39027062 CATTTAGGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.27, T:0.12
Consensus pattern (7 bp):
AGAAATG
Found at i:39044133 original size:44 final size:44
Alignment explanation
Indices: 39044065--39044148 Score: 141
Period size: 44 Copynumber: 1.9 Consensus size: 44
39044055 CCAAAACATG
*
39044065 TGTCTCATATATCATGAACTCAGACCACAACTCATGAGTTTAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTTAGA
* *
39044109 TGTCACATATATCATGAACTCAGACCATAACTCATTAGTT
1 TGTCACATATATCATGAACTCAGACCACAACTCATGAGTT
39044149 CAAATCACAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.31
Consensus pattern (44 bp):
TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTTAGA
Found at i:39048527 original size:30 final size:29
Alignment explanation
Indices: 39048457--39048580 Score: 182
Period size: 29 Copynumber: 4.3 Consensus size: 29
39048447 TGTGTGTACC
39048457 ATGTGAAAAGGGATAGCTTC-AGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGA-CTATCGA
39048486 ATGTGAAAAGGGATAGCTTCGACTATCGA
1 ATGTGAAAAGGGATAGCTTCGACTATCGA
*
39048515 ATGTGAAAAAGGGATAGCTTCGCCTATCGA
1 ATGTG-AAAAGGGATAGCTTCGACTATCGA
* *
39048545 ATGTGAAAAGGGATAGCTTTGGC--TCGA
1 ATGTGAAAAGGGATAGCTTCGACTATCGA
39048572 ATGTGAAAA
1 ATGTGAAAA
39048581 TGTTAGGTAT
Statistics
Matches: 90, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
27 13 0.14
29 48 0.53
30 29 0.32
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (29 bp):
ATGTGAAAAGGGATAGCTTCGACTATCGA
Found at i:39048529 original size:59 final size:57
Alignment explanation
Indices: 39048457--39048580 Score: 189
Period size: 59 Copynumber: 2.2 Consensus size: 57
39048447 TGTGTGTACC
39048457 ATGTG-AAAAGGGATAGCTTCAG-CTATCGAATGTGAAAAGGGATAGCTTCGACTATCGA
1 ATGTGAAAAAGGGATAGCTTC-GCCTATCGAATGTGAAAAGGGATAGCTTCGAC--TCGA
* *
39048515 ATGTGAAAAAGGGATAGCTTCGCCTATCGAATGTGAAAAGGGATAGCTTTGGCTCGA
1 ATGTGAAAAAGGGATAGCTTCGCCTATCGAATGTGAAAAGGGATAGCTTCGACTCGA
39048572 ATGTGAAAA
1 ATGTGAAAA
39048581 TGTTAGGTAT
Statistics
Matches: 62, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
57 13 0.21
58 6 0.10
59 43 0.69
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (57 bp):
ATGTGAAAAAGGGATAGCTTCGCCTATCGAATGTGAAAAGGGATAGCTTCGACTCGA
Found at i:39048612 original size:33 final size:33
Alignment explanation
Indices: 39048585--39048704 Score: 161
Period size: 33 Copynumber: 3.7 Consensus size: 33
39048575 TGAAAATGTT
**
39048585 AGGTATACTTTGTGTATACCACATGAAAAGGTT
1 AGGTATACTTTGTGTATACCACATGAAAAGGAA
* * * *
39048618 ATGTACACTTTGTGTGTA-CACTTGAAAAGGAA
1 AGGTATACTTTGTGTATACCACATGAAAAGGAA
*
39048650 AGGTATACTTTGTGTATACCATATGAAAAGGAA
1 AGGTATACTTTGTGTATACCACATGAAAAGGAA
*
39048683 AGGTATACTTTGTGTGTACCAC
1 AGGTATACTTTGTGTATACCAC
39048705 TTAGAAAGAA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
32 26 0.36
33 47 0.64
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (33 bp):
AGGTATACTTTGTGTATACCACATGAAAAGGAA
Found at i:39048644 original size:65 final size:66
Alignment explanation
Indices: 39048585--39048711 Score: 193
Period size: 65 Copynumber: 1.9 Consensus size: 66
39048575 TGAAAATGTT
** *
39048585 AGGTATACTTTGTGTATACCACATGAAAAGGTTATGTACACTTTGTGTGTA-CACTTGAAAAGGA
1 AGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACCACTTGAAAAGGA
39048649 A
66 A
* *
39048650 AGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTGTACCACTTAGAAA
1 AGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACCACTT-GAAA
39048712 GAAACATACA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
65 46 0.84
66 5 0.09
67 4 0.07
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (66 bp):
AGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACCACTTGAAAAGGA
A
Found at i:39054295 original size:19 final size:19
Alignment explanation
Indices: 39054271--39054330 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 19
39054261 TTGTACGGGA
39054271 TTTGCACTTTGATCCTCTG
1 TTTGCACTTTGATCCTCTG
* *
39054290 TTTGCACTTCGGTTCCTCTG
1 TTTGCACTT-TGATCCTCTG
*
39054310 TTATGCATCTATGATTCCTCT
1 TT-TGCA-CTTTGA-TCCTCT
39054331 AGTGTGGTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 9 0.28
20 10 0.31
21 5 0.16
22 8 0.25
ACGTcount: A:0.12, C:0.27, G:0.15, T:0.47
Consensus pattern (19 bp):
TTTGCACTTTGATCCTCTG
Found at i:39056801 original size:21 final size:21
Alignment explanation
Indices: 39056777--39056819 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
39056767 GGAATTAAAT
39056777 TATGAATTGAATTGAGAACTA
1 TATGAATTGAATTGAGAACTA
39056798 TATGAATTGAATTGAGAACTA
1 TATGAATTGAATTGAGAACTA
39056819 T
1 T
39056820 GTTATCCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.05, G:0.19, T:0.35
Consensus pattern (21 bp):
TATGAATTGAATTGAGAACTA
Found at i:39057966 original size:18 final size:20
Alignment explanation
Indices: 39057923--39057966 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
39057913 ATTTTAAGGC
*
39057923 TAAAAAAGTAATTTAGTAAA
1 TAAAAAAGTAATTAAGTAAA
39057943 TAAAAAA-TAATTAAGTAAA
1 TAAAAAAGTAATTAAGTAAA
39057962 TAAAA
1 TAAAA
39057967 TATGAATGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (20 bp):
TAAAAAAGTAATTAAGTAAA
Found at i:39060454 original size:42 final size:40
Alignment explanation
Indices: 39060407--39060485 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 40
39060397 ACAGGGATTT
*
39060407 TCACACGACCAGACACACGCCCATGTCATTGGCCCGTGTCCC
1 TCACACGACCAGA-ACACGCCCATGTC-TTAGCCCGTGTCCC
* * * *
39060449 TCACACGGCCATAAGACGCCCGTGTCTTAGCCCGTGT
1 TCACACGACCAGAACACGCCCATGTCTTAGCCCGTGT
39060486 GCAAAAACCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 10 0.31
41 11 0.34
42 11 0.34
ACGTcount: A:0.20, C:0.39, G:0.22, T:0.19
Consensus pattern (40 bp):
TCACACGACCAGAACACGCCCATGTCTTAGCCCGTGTCCC
Found at i:39061649 original size:46 final size:47
Alignment explanation
Indices: 39061423--39061695 Score: 242
Period size: 47 Copynumber: 5.8 Consensus size: 47
39061413 GTAAGGTGCC
* *
39061423 GATGCCATGTCCCAGACATGGTTTTACACTGGCTCAT-ATCTC-AAGTT
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTC-TCATCTCGAAGCT
* * *
39061470 GATGCAATGTCCTAGACATGGTCTTACACTGACTATCATCTCGTAA-CAT
1 GATGC-ATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCG-AAGC-T
* * *
39061519 -ATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAATC-
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCG-AAGCT
* * *
39061565 GATGCATGTCCTAGACAT-GTCTTGA-ACTGGCT-TACGTCTCGAGGCT
1 GATGCATGTCCCAGACATGGTCTT-ACACTGGCTCT-CATCTCGAAGCT
* * *
39061611 GATGCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTC-AATGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGAA-GCT
* *
39061657 GATGCCGTGTCCCAGACATAGTCTTACACTGGCTCTCAT
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCAT
39061696 AATGTGGCCG
Statistics
Matches: 193, Mismatches: 18, Indels: 29
0.80 0.08 0.12
Matches are distributed among these distances:
45 5 0.03
46 59 0.31
47 104 0.54
48 22 0.11
49 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGAAGCT
Found at i:39069060 original size:47 final size:46
Alignment explanation
Indices: 39069002--39069249 Score: 202
Period size: 46 Copynumber: 5.3 Consensus size: 46
39068992 GCCATATCCT
* *
39069002 AGACATGGTCTTACACTGGCTCAT-ATCTCAAGTCGATGCCATGCCCC
1 AGACAT-GTCTTACACTGGCTCATCATCTCAAGCCGATG-CATGTCCC
* * **
39069049 AGACATAGTCTTACACTGAC-AATCATCT-AGTAGCCGATGCATGTCAT
1 AGACAT-GTCTTACACTGGCTCATCATCTCA--AGCCGATGCATGTCCC
* * * *
39069096 AGACATGTCTTACACTGGCTTA-CGTCTCGAGGTCGATGCATGTCCC
1 AGACATGTCTTACACTGGCTCATCATCTC-AAGCCGATGCATGTCCC
* *
39069142 AGACATGTCTTACACTAGCTC-TCATCTCAATGCCAATGCCATGTCCC
1 AGACATGTCTTACACTGGCTCATCATCTCAA-GCCGATG-CATGTCCC
* *** *
39069189 AGACATGGTCTTACACTGGCTC-TCATAATGTGGTCGATGCATGTCCC
1 AGACAT-GTCTTACACTGGCTCATCAT-CTCAAGCCGATGCATGTCCC
*
39069236 AAACATGTCTTACA
1 AGACATGTCTTACA
39069250 TTAGCTCACA
Statistics
Matches: 162, Mismatches: 28, Indels: 23
0.76 0.13 0.11
Matches are distributed among these distances:
45 1 0.01
46 68 0.42
47 61 0.38
48 31 0.19
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
AGACATGTCTTACACTGGCTCATCATCTCAAGCCGATGCATGTCCC
Found at i:39069209 original size:94 final size:94
Alignment explanation
Indices: 39068990--39069256 Score: 287
Period size: 94 Copynumber: 2.9 Consensus size: 94
39068980 TAAGGTGCAT
* * * * *
39068990 ATGCCATATCCTAGACATGGTCTTACACTGGCTCATATCTC-AAGTCGATGCCATGCCCCAGACA
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGAGGTCGATG-CATGTCCCAGACA
** * *
39069054 TAGTCTTACACT-GACAATCATCTAGTAGCCG
65 T-GTCTTACACTAG-CTCTCATCTAATAGCCA
* *
39069085 ATG-CATGTCATAGACAT-GTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAGACAT
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGAGGTCGATGCATGTCCCAGACAT
39069148 GTCTTACACTAGCTCTCATCTCAAT-GCCA
66 GTCTTACACTAGCTCTCATCT-AATAGCCA
* * * *
39069177 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGTCGATGCATGTCCCAAAC
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCT-TACAT-CTCGAGGTCGATGCATGTCCCAGAC
*
39069240 ATGTCTTACATTAGCTC
64 ATGTCTTACACTAGCTC
39069257 ACACACAAAT
Statistics
Matches: 147, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
92 23 0.16
93 47 0.32
94 72 0.49
95 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (94 bp):
ATGCCATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGAGGTCGATGCATGTCCCAGACAT
GTCTTACACTAGCTCTCATCTAATAGCCA
Found at i:39073147 original size:17 final size:17
Alignment explanation
Indices: 39073127--39073162 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
39073117 ATGTGAAAAG
39073127 TATATGAATATGAAACT
1 TATATGAATATGAAACT
39073144 TATATGAATATGAAACT
1 TATATGAATATGAAACT
39073161 TA
1 TA
39073163 GTTATTATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (17 bp):
TATATGAATATGAAACT
Found at i:39074114 original size:20 final size:20
Alignment explanation
Indices: 39074089--39074127 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
39074079 GTTAAGCATG
39074089 TGTAATCTGT-TATATCTGTA
1 TGTAAT-TGTCTATATCTGTA
*
39074109 TGTAATTTTCTATATCTGT
1 TGTAATTGTCTATATCTGT
39074128 TATTGGGGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.23, C:0.10, G:0.13, T:0.54
Consensus pattern (20 bp):
TGTAATTGTCTATATCTGTA
Found at i:39075816 original size:40 final size:40
Alignment explanation
Indices: 39075732--39075915 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
39075722 TTGAATGCTG
* * * *
39075732 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
39075771 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
39075812 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
39075852 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
39075892 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
39075916 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:39075869 original size:80 final size:81
Alignment explanation
Indices: 39075732--39075912 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
39075722 TTGAATGCTG
* * *
39075732 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
39075796 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
39075812 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
39075873 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
39075892 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
39075913 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:39075936 original size:39 final size:38
Alignment explanation
Indices: 39075813--39075962 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
39075803 GTTATTAATT
* ** * *
39075813 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
39075853 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
39075892 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
39075932 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
39075963 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:39105349 original size:53 final size:53
Alignment explanation
Indices: 39105150--39105356 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 53
39105140 ATTAGGGTTT
* * * * * *
39105150 AAGGATATCAAGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * *
39105204 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAA-TCTACGATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGT-T-C-ATAAGGC
** * * * ** *
39105259 AAATATCCCATGTAAGACCATGCCAAGGCATTACAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
39105312 AAGGATACCACGTAAGACCTTGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
39105357 TAAAAGGTAC
Statistics
Matches: 121, Mismatches: 28, Indels: 9
0.77 0.18 0.06
Matches are distributed among these distances:
52 1 0.01
53 43 0.36
54 39 0.32
55 37 0.31
56 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:39111180 original size:13 final size:13
Alignment explanation
Indices: 39111162--39111189 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
39111152 ACAAAATTGG
39111162 AAAGATGAAAAAT
1 AAAGATGAAAAAT
39111175 AAAGATGAAAAAT
1 AAAGATGAAAAAT
39111188 AA
1 AA
39111190 TAAAAAGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAGATGAAAAAT
Found at i:39112594 original size:50 final size:50
Alignment explanation
Indices: 39112539--39112638 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
39112529 AGCCATACAT
* *
39112539 AGTTCCTGATATGTATATTAAATATATGAGTAATAAAGGTGATGAGGATA
1 AGTTCCTGATATGTATATGAAATATATGACTAATAAAGGTGATGAGGATA
*
39112589 AGTTCCTGATATTTATATGAAATATATGACTAATAAAGGTGATGAGGATA
1 AGTTCCTGATATGTATATGAAATATATGACTAATAAAGGTGATGAGGATA
39112639 TGTGTTAAGG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.34
Consensus pattern (50 bp):
AGTTCCTGATATGTATATGAAATATATGACTAATAAAGGTGATGAGGATA
Found at i:39115793 original size:13 final size:13
Alignment explanation
Indices: 39115775--39115818 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
39115765 CGAAGTAAGT
39115775 TTGTATAATTAAA
1 TTGTATAATTAAA
*
39115788 TTGTATATTTAAA
1 TTGTATAATTAAA
39115801 -TGT-TAAATTAAA
1 TTGTAT-AATTAAA
39115813 TTGTAT
1 TTGTAT
39115819 GTATGTGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 1 0.04
12 9 0.35
13 15 0.58
14 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (13 bp):
TTGTATAATTAAA
Found at i:39116273 original size:25 final size:25
Alignment explanation
Indices: 39116225--39116294 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 25
39116215 CCCAATTATG
* *
39116225 ATGAGCTTTCCATTACATGACTCAT
1 ATGAGCTTCCCATTACATGACTCAA
* * *
39116250 ATGAGCTTCCCGTTATATGGCTCAA
1 ATGAGCTTCCCATTACATGACTCAA
* *
39116275 AAGAGCTTTCCATTTACATG
1 ATGAGCTTCCCA-TTACATG
39116295 TTTGCATGAG
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
25 29 0.83
26 6 0.17
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (25 bp):
ATGAGCTTCCCATTACATGACTCAA
Found at i:39133425 original size:93 final size:93
Alignment explanation
Indices: 39133310--39133480 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
39133300 GCCCATAAGT
* * *
39133310 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTGAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
39133375 CGAGCTT-GGATGCCTAGTTACATCTCTC
66 CGAG-TTCGGATGCCTAGTTACATCTCTC
* *
39133403 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
39133468 CGAGTTCGGATGC
66 CGAGTTCGGATGC
39133481 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:39133477 original size:46 final size:46
Alignment explanation
Indices: 39133302--39133477 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
39133292 TGTAACCCGC
* * * *
39133302 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
39133348 CCATAAGTGAACTCGGACTGAACTCAACGAGCTT-GGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGA---C-ATTTGCAT
*
39133398 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
39133441 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
39133478 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 63 0.59
47 26 0.24
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:39135431 original size:15 final size:14
Alignment explanation
Indices: 39135383--39135467 Score: 71
Period size: 15 Copynumber: 5.8 Consensus size: 14
39135373 CAAAGATAAC
* *
39135383 AAGAAAACCGAATA
1 AAGAAATCCAAATA
39135397 AAGAAATCCAAGATA
1 AAGAAATCCAA-ATA
* *
39135412 GAGAAACCCGAAATA
1 AAGAAATCC-AAATA
39135427 AAGAAATCCAGAATA
1 AAGAAATCCA-AATA
* *
39135442 AAGAGATCCAGGATA
1 AAGAAATCCA-AATA
*
39135457 AAGAAACCCAA
1 AAGAAATCCAA
39135468 GATACGATAC
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
14 10 0.18
15 45 0.79
16 2 0.04
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.09
Consensus pattern (14 bp):
AAGAAATCCAAATA
Found at i:39135471 original size:15 final size:15
Alignment explanation
Indices: 39135394--39135471 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
39135384 AGAAAACCGA
39135394 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
39135409 ATAGAGAAACCCGAA-
1 ATAAAGAAATCC-AAG
39135424 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
39135438 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
39135454 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
39135469 ATA
1 ATA
39135472 CGATACTATG
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
13 1 0.02
15 46 0.92
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:39144012 original size:13 final size:14
Alignment explanation
Indices: 39143986--39144018 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
39143976 ATAAAATATA
39143986 AATTTATATTTAAT
1 AATTTATATTTAAT
39144000 AATTTAT-TTTAAT
1 AATTTATATTTAAT
39144013 ATATTT
1 A-ATTT
39144019 CATTAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
AATTTATATTTAAT
Found at i:39147471 original size:96 final size:96
Alignment explanation
Indices: 39147307--39147541 Score: 344
Period size: 96 Copynumber: 2.4 Consensus size: 96
39147297 AGACATTTGG
* * *
39147307 TTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGT
1 TTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCACATTATGAAAGCCAGT
* * *
39147372 GTAATACCATGTTTGGGACATGGCATTAGCA
66 GTAAGACCATGTCTGGGACATGGCATCAGCA
* * *
39147403 TTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTCTGAAAGCTAGT
1 TTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCACATTATGAAAGCCAGT
*
39147468 GTAAGACCATGTCTGGGATATGGCATCAGCA
66 GTAAGACCATGTCTGGGACATGGCATCAGCA
* * * *
39147499 TTTATATGCGAGCTAGTGTAAGACCATGTTTGGAACATGGCAT
1 TTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCAT
39147542 TCGCATTGTT
Statistics
Matches: 125, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 125 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (96 bp):
TTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCACATTATGAAAGCCAGT
GTAAGACCATGTCTGGGACATGGCATCAGCA
Found at i:39147548 original size:48 final size:48
Alignment explanation
Indices: 39147321--39147594 Score: 261
Period size: 48 Copynumber: 5.7 Consensus size: 48
39147311 TATGTGTGCC
** *
39147321 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAT-TATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTTATATGAGAGCT
* * * * * *
39147369 AGTGTAATACCATGTTTGGGACATGGCATTAGCATTGATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTTATATGAGAGCT
* * ** * *
39147417 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACAT-TCTGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTTATATGAGAGCT
* *
39147465 AGTGTAAGACCATGTCTGGGATATGGCATCAGCATTTATATGCGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTTATATGAGAGCT
* * * *
39147513 AGTGTAAGACCATGTTTGGAACATGGCATTC-GCATTGTTATATGTG-TC-
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCAGCA-T-TTATATGAGAGCT
* *
39147561 AGTGTAAGACCATGTCTGGGACATAGAATCAGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCA
39147595 CCGATGTATG
Statistics
Matches: 183, Mismatches: 36, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
47 7 0.04
48 162 0.89
49 6 0.03
50 8 0.04
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTTATATGAGAGCT
Found at i:39147581 original size:144 final size:144
Alignment explanation
Indices: 39147321--39147584 Score: 399
Period size: 144 Copynumber: 1.8 Consensus size: 144
39147311 TATGTGTGCC
*
39147321 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAATACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTTT
* *
39147386 GGGACATGGCATTAGCATTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCC
66 GGAACATGGCATTAGCATTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
39147451 ACATTCTGAAAGCT
131 ACATTCTGAAAGCT
* ** * *
39147465 AGTGTAAGACCATGTCTGGGATATGGCATCAG-CATTTATATGCGAGCTAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAT-TATGAGAGCCAGTGTAAGACCATGTT
*
39147529 TGGAACATGGCATTCGCATTGTTATATGTGT-C-AGTGTAAGACCATGTCTGGGACAT
65 TGGAACATGGCATTAGCATTG--ATATGTGTGCTAGTGTAAGACCATGTCTGGGACAT
39147585 AGAATCAGCA
Statistics
Matches: 108, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
143 3 0.03
144 96 0.89
145 1 0.01
146 8 0.07
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (144 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTTT
GGAACATGGCATTAGCATTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
ACATTCTGAAAGCT
Found at i:39150323 original size:3 final size:3
Alignment explanation
Indices: 39150315--39150426 Score: 63
Period size: 3 Copynumber: 36.7 Consensus size: 3
39150305 TATTTATTTC
* * * **
39150315 TAT TAT TA- TAT ATAT AAAT TAT TAT TAT TAT T-T TAT TTT TAA CCT
1 TAT TAT TAT TAT -TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
39150360 TAT TTT TA- TAT TAT ATAT AAT TAT T-T TAT TAT ATAT TACT TA- TAT
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT -TAT TA-T TAT TAT
39150405 TAT TAT TATT TAT TAT ATAT TA
1 TAT TAT TA-T TAT TAT -TAT TA
39150427 CTTTTCACAA
Statistics
Matches: 83, Mismatches: 14, Indels: 24
0.69 0.12 0.20
Matches are distributed among these distances:
2 10 0.12
3 53 0.64
4 20 0.24
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:39150336 original size:25 final size:24
Alignment explanation
Indices: 39150300--39150424 Score: 75
Period size: 25 Copynumber: 5.2 Consensus size: 24
39150290 AAATCTAACC
*
39150300 ATATAT-ATTTATTTCTATTATTAT
1 ATATATAAATTATTT-TATTATTAT
*
39150324 ATATATAAATTATTATTATTATTTT
1 ATATATAAATTATT-TTATTATTAT
* * *
39150349 ATTTTTAACCTTA-TTT-TTA-TAT
1 ATATATAA-ATTATTTTATTATTAT
39150371 -TATATATAATTATTTTATTA-TAT
1 ATATATA-AATTATTTTATTATTAT
*
39150394 AT-TACTTATATTATTATTATTTATTAT
1 ATATA--TAAATTATT-TTA-TTATTAT
39150421 ATAT
1 ATAT
39150425 TACTTTTCAC
Statistics
Matches: 78, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
21 7 0.09
22 6 0.08
23 11 0.14
24 15 0.19
25 26 0.33
26 7 0.09
27 5 0.06
28 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (24 bp):
ATATATAAATTATTTTATTATTAT
Found at i:39150396 original size:7 final size:7
Alignment explanation
Indices: 39150366--39150526 Score: 63
Period size: 7 Copynumber: 23.1 Consensus size: 7
39150356 ACCTTATTTT
39150366 TATATTA
1 TATATTA
*
39150373 TATATAA
1 TATATTA
39150380 T-TATT-
1 TATATTA
39150385 T-TATTA
1 TATATTA
39150391 TATATTA
1 TATATTA
39150398 CTTATATTA
1 --TATATTA
39150407 T-TATTA
1 TATATTA
*
39150413 TTTATTA
1 TATATTA
39150420 TATATTA
1 TATATTA
* **
39150427 CTTTTCACAA
1 --TAT-ATTA
*
39150437 AATATTA
1 TATATTA
*
39150444 T-TATTT
1 TATATTA
*
39150450 TACATTA
1 TATATTA
39150457 T-TATTTA
1 TATA-TTA
*
39150464 TATATCA
1 TATATTA
39150471 T-TATTA
1 TATATTA
*
39150477 TATTTTA
1 TATATTA
*
39150484 CTTGTATTA
1 --TATATTA
39150493 TATATT-
1 TATATTA
*
39150499 TAT-TAA
1 TATATTA
39150505 T-TATTTA
1 TATA-TTA
39150512 TATATTA
1 TATATTA
39150519 TATATTA
1 TATATTA
39150526 T
1 T
39150527 TTTTACATAT
Statistics
Matches: 113, Mismatches: 23, Indels: 36
0.66 0.13 0.21
Matches are distributed among these distances:
5 7 0.06
6 25 0.22
7 60 0.53
8 5 0.04
9 14 0.12
10 2 0.02
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (7 bp):
TATATTA
Found at i:39150403 original size:34 final size:29
Alignment explanation
Indices: 39150370--39150531 Score: 97
Period size: 29 Copynumber: 5.6 Consensus size: 29
39150360 TATTTTTATA
*
39150370 TTATA-TATAATTATTTTATTATATATTAC
1 TTATATTATTATTA-TTTATTATATATTAC
39150399 TTATATTATTATTATTTATTATATATTAC
1 TTATATTATTATTATTTATTATATATTAC
* ** * * *
39150428 TTTTCACAAAATATTA-TTATTTTACATTA-
1 TTAT-A-TTATTATTATTTATTATATATTAC
* *
39150457 TTAT-TTATATATCA-TTATTATATTTTAC
1 TTATATTAT-TATTATTTATTATATATTAC
* * *
39150485 TTGTATTATATATTTATTAATTATTTATATA-
1 TTATATTAT-TA-TTATTTATTATATAT-TAC
39150516 TTATA-TATTATT-TTTA
1 TTATATTATTATTATTTA
39150532 CATATACACT
Statistics
Matches: 102, Mismatches: 22, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
26 1 0.01
27 17 0.17
28 5 0.05
29 35 0.34
30 24 0.24
31 18 0.18
32 2 0.02
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (29 bp):
TTATATTATTATTATTTATTATATATTAC
Done.