Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 122 of 352
Found at i:39150502 original size:11 final size:12
Alignment explanation
Indices: 39150455--39150526 Score: 55
Period size: 11 Copynumber: 6.1 Consensus size: 12
39150445 TATTTTACAT
39150455 TATTATTTATATA
1 TATTATTTAT-TA
39150468 TCATTA-TTA-TA
1 T-ATTATTTATTA
*
39150479 TTTTACTTGTATTA
1 TATTA-TT-TATTA
39150493 TA-TATTTATTA
1 TATTATTTATTA
39150504 -ATTATTTA-TA
1 TATTATTTATTA
*
39150514 TATTATATATTA
1 TATTATTTATTA
39150526 T
1 T
39150527 TTTTACATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 17
0.71 0.04 0.25
Matches are distributed among these distances:
10 6 0.12
11 21 0.44
12 6 0.12
13 8 0.17
14 7 0.15
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (12 bp):
TATTATTTATTA
Found at i:39150611 original size:14 final size:15
Alignment explanation
Indices: 39150315--39150618 Score: 105
Period size: 14 Copynumber: 20.6 Consensus size: 15
39150305 TATTTATTTC
39150315 TATTATTATATATATA
1 TATTATTAT-TATATA
*
39150331 AATTATTATTAT-TA
1 TATTATTATTATATA
* *
39150345 TTTTATTTTTA-ACCT-
1 TATTATTATTATA--TA
*
39150360 TATTTTTATATTATATA
1 TA-TTAT-TATTATATA
39150377 TAATTATT-TTAT-TA
1 T-ATTATTATTATATA
39150391 TA-TATTACTTATAT-
1 TATTATTA-TTATATA
39150405 TATTATTATTTATTATA
1 TATTATTA-TTA-TATA
* *
39150422 TATTACTT-TTCACAAAA
1 TATTA-TTATT-A-TATA
39150439 TATTATTATT-T-TA
1 TATTATTATTATATA
*
39150452 CATTATTATT-TATA
1 TATTATTATTATATA
*
39150466 TATCATTATTATAT-
1 TATTATTATTATATA
39150480 T-TTACTTGTATTATATA
1 TATTA--T-TATTATATA
*
39150497 T-TTATTAATTATTTA
1 TATTATT-ATTATATA
39150512 TA-TATTA-TATAT-
1 TATTATTATTATATA
* *
39150524 TATTTTTA-CATATA
1 TATTATTATTATATA
* *
39150538 CACTT-TCA-TATCATA
1 TA-TTATTATTAT-ATA
* *
39150553 TATTATAATTATTTA
1 TATTATTATTATATA
* * *
39150568 TATTA-TGTTATTTT
1 TATTATTATTATATA
*
39150582 TA-TACTATTATATA
1 TATTATTATTATATA
*
39150596 TATTTTTATT-TATA
1 TATTATTATTATATA
39150610 TATTATTAT
1 TATTATTAT
39150619 CATTAAAGGT
Statistics
Matches: 218, Mismatches: 37, Indels: 68
0.67 0.11 0.21
Matches are distributed among these distances:
12 6 0.03
13 28 0.13
14 67 0.31
15 54 0.25
16 32 0.15
17 27 0.12
18 4 0.02
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.60
Consensus pattern (15 bp):
TATTATTATTATATA
Found at i:39150617 original size:26 final size:28
Alignment explanation
Indices: 39150551--39150618 Score: 77
Period size: 26 Copynumber: 2.5 Consensus size: 28
39150541 TTTCATATCA
* *
39150551 TATATTATAATTATTTATATTATGTTATT
1 TATA-TATTATTATATATATTATGTTATT
* *
39150580 TTTATACTATTATATATATT-T-TTATT
1 TATATATTATTATATATATTATGTTATT
39150606 TATATATTATTAT
1 TATATATTATTAT
39150619 CATTAAAGGT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
26 16 0.48
27 1 0.03
28 13 0.39
29 3 0.09
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (28 bp):
TATATATTATTATATATATTATGTTATT
Found at i:39150885 original size:18 final size:19
Alignment explanation
Indices: 39150864--39150910 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
39150854 TTTAAAACCA
39150864 ATATATTTTTTATT-TTAT
1 ATATATTTTTTATTCTTAT
* * *
39150882 ATATAATTATTATTCTTTT
1 ATATATTTTTTATTCTTAT
*
39150901 ATAAATTTTT
1 ATATATTTTT
39150911 GTTATATATT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
ATATATTTTTTATTCTTAT
Found at i:39153541 original size:46 final size:46
Alignment explanation
Indices: 39153475--39153642 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 46
39153465 TCTCATAGCT
39153475 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCC
* * * * * * *
39153521 GATGCATGTCCCAAAAATGTCTTACATTAGC--ACTTGTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTAC--GTCTCGAGGCC
* * *
39153567 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACGT-CTCGAGGCC
39153615 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
39153643 AGCTCACACA
Statistics
Matches: 97, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
44 2 0.02
46 49 0.51
47 26 0.27
48 18 0.19
49 1 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCC
Found at i:39153615 original size:94 final size:92
Alignment explanation
Indices: 39153429--39153645 Score: 246
Period size: 94 Copynumber: 2.3 Consensus size: 92
39153419 GTCAGGTGTT
* * * *
39153429 GATGCCATGTCCCAGACATGGTCTTACACTAACAC--ATCTC-ATAGCTGATGCATGTCCCAGAC
1 GATG-CATGTCCCAAAAAT-GTCTTACACTAGCACTTGTCTCAAT-GCTGATGCATGTCCCAGAC
* *
39153491 ATGTCTTACACTGGCTTACGTCTCGAGGCC
63 ATGTCTTACACTGGCTTACATATCGAGGCC
*
39153521 GATGCATGTCCCAAAAATGTCTTACATTAGCACTTGTCTCAATGCTGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAAAAATGTCTTACACTAGCACTTGTCTCAATGCTGATG-CATGTCCCAGACAT
*
39153586 GGTCTTACACTGGCTCT-CATAAT-GTGGCC
65 -GTCTTACACTGGCT-TACAT-ATCGAGGCC
* *
39153615 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAAAAATGTCTTACACTAGC
39153646 TCACACAAGT
Statistics
Matches: 107, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
90 13 0.12
91 12 0.11
92 15 0.14
93 16 0.15
94 49 0.46
95 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAAAAATGTCTTACACTAGCACTTGTCTCAATGCTGATGCATGTCCCAGACATG
TCTTACACTGGCTTACATATCGAGGCC
Found at i:39157189 original size:49 final size:49
Alignment explanation
Indices: 39157135--39157232 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
39157125 GAAGTGTAAG
39157135 AATGTGTTAACGATAATTATGGCATGAAGTTGATAAGTTTAAACTAGGT
1 AATGTGTTAACGATAATTATGGCATGAAGTTGATAAGTTTAAACTAGGT
39157184 AATGTGTTAACGATAATTATGGCATGAAGTTGATAAGTTTAAACTAGGT
1 AATGTGTTAACGATAATTATGGCATGAAGTTGATAAGTTTAAACTAGGT
39157233 CAAGTATGGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.37, C:0.06, G:0.22, T:0.35
Consensus pattern (49 bp):
AATGTGTTAACGATAATTATGGCATGAAGTTGATAAGTTTAAACTAGGT
Found at i:39162488 original size:16 final size:16
Alignment explanation
Indices: 39162459--39162512 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
39162449 TTTGGTTCGC
*
39162459 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
* *
39162475 CGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
39162491 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
39162507 TGTAAT
1 TGTAAT
39162513 AGCAAATCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.31, C:0.02, G:0.35, T:0.31
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:39162557 original size:45 final size:44
Alignment explanation
Indices: 39162491--39162581 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
39162481 GGAATAGAGG
* *
39162491 TGTAATGGATTAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
39162536 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
39162580 TG
1 TG
39162582 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 18 0.45
45 22 0.55
ACGTcount: A:0.31, C:0.05, G:0.29, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:39162761 original size:16 final size:17
Alignment explanation
Indices: 39162724--39162761 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
39162714 ATTTAATCAT
39162724 ATTTAAACATAATTATA
1 ATTTAAACATAATTATA
*
39162741 A-TTAAATAT-ATTATA
1 ATTTAAACATAATTATA
39162756 ATTTAA
1 ATTTAA
39162762 TAAAATTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 7 0.37
16 11 0.58
17 1 0.05
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTTAAACATAATTATA
Found at i:39162797 original size:22 final size:21
Alignment explanation
Indices: 39162707--39162992 Score: 74
Period size: 22 Copynumber: 14.0 Consensus size: 21
39162697 ATTATCAATA
* *
39162707 ATAA-ATAATTTAATCATATT
1 ATAATATAATTTAATAAAATT
* *
39162727 -TAAACATAATTATAATTAAA-T
1 AT-AATATAATT-TAATAAAATT
*
39162748 ATATTATAATTTAATAAAATT
1 ATAATATAATTTAATAAAATT
* * *
39162769 CTTATATGAATTTACTAAAATT
1 ATAATAT-AATTTAATAAAATT
**
39162791 ATAATAT-A--TAATAGTA-T
1 ATAATATAATTTAATAAAATT
* *
39162808 AAAATATAATTTAAAAAAATAATT
1 ATAATATAATTT--AATAA-AATT
39162832 ATTAAATATAATTTAAT-AAA--
1 A-T-AATATAATTTAATAAAATT
39162852 A-AATATAATTTAATAAAATT
1 ATAATATAATTTAATAAAATT
* * *
39162872 CTTA-AT-A-TTAA-AATATT
1 ATAATATAATTTAATAAAATT
* * * *
39162889 CTTATATGAATTTACTAAAATC
1 ATAATAT-AATTTAATAAAATT
*
39162911 ATAATAT-ATAATACTATAAAA-T
1 ATAATATAAT-TTA--ATAAAATT
* ** **
39162933 ATAATCTAAAATAATTATTATT
1 ATAATATAATTTAA-TAAAATT
*
39162955 A-AATATAATTTAATATAA--
1 ATAATATAATTTAATAAAATT
39162973 AT-ATATAATTTAATAAAATT
1 ATAATATAATTTAATAAAATT
39162993 CTTAGTATTA
Statistics
Matches: 193, Mismatches: 40, Indels: 66
0.65 0.13 0.22
Matches are distributed among these distances:
17 29 0.15
18 31 0.16
19 2 0.01
20 22 0.11
21 37 0.19
22 50 0.26
23 8 0.04
24 4 0.02
26 10 0.05
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (21 bp):
ATAATATAATTTAATAAAATT
Found at i:39162857 original size:17 final size:17
Alignment explanation
Indices: 39162835--39162869 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
39162825 AATAATTATT
39162835 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
39162852 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
39162869 A
1 A
39162870 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:39162980 original size:18 final size:17
Alignment explanation
Indices: 39162957--39162991 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
39162947 TTATTATTAA
39162957 ATATAATTTAATATAAAT
1 ATATAATTTAATA-AAAT
39162975 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
39162992 TCTTAGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:39163050 original size:61 final size:60
Alignment explanation
Indices: 39162864--39163052 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 60
39162854 ATATAATTTA
39162864 ATAAAATTCTTAATATTAAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACT
1 ATAAAATTCTTAATATT-AAATATTCTTATA-GAATTTACTAAAATCATAATATATAATACT
* * * * * * ** *
39162926 ATAAAA-T-ATAATCTAAAATAATTATTATTA-AATATAATTTAAT-ATAAATATATAAT-TT
1 ATAAAATTCTTAATATTAAAT-ATTCTTA-TAGAATTTACTAAAATCAT-AATATATAATACT
*
39162984 AATAAAATTCTTAGTATTAAATATTCTTATACGAATTTACTAAAATCATAATATATAATACT
1 -ATAAAATTCTTAATATTAAATATTCTTATA-GAATTTACTAAAATCATAATATATAATACT
39163046 ATAAAAT
1 ATAAAAT
39163053 ATAATCTAAA
Statistics
Matches: 98, Mismatches: 19, Indels: 21
0.71 0.14 0.15
Matches are distributed among these distances:
58 3 0.03
59 31 0.32
60 18 0.18
61 37 0.38
62 9 0.09
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (60 bp):
ATAAAATTCTTAATATTAAATATTCTTATAGAATTTACTAAAATCATAATATATAATACT
Found at i:39163064 original size:120 final size:119
Alignment explanation
Indices: 39162762--39163068 Score: 517
Period size: 120 Copynumber: 2.6 Consensus size: 119
39162752 TATAATTTAA
* * * *
39162762 TAAA-ATTCTTATATGAATTTACTAAAATTATAATATATAATAGTATAAAATATAATTTAAAAAA
1 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAATA
*
39162826 ATAATTATTAAATATAATTTAATAAAAAATATAATTTAATAAAATTCTTAATAT
66 ATTATTATTAAATATAATTTAATAAAAAATATAATTTAATAAAATTCTTAATAT
39162880 TAAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAAT
1 T-AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAAT
* *
39162945 AATTATTATTAAATATAATTTAATATAAATATATAATTTAATAAAATTCTTAGTAT
65 AATTATTATTAAATATAATTTAATA-AAAAATATAATTTAATAAAATTCTTAATAT
*
39163001 TAAATATTCTTATACGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAATA
1 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAATA
39163066 ATT
66 ATT
39163069 GATTTTGTGG
Statistics
Matches: 178, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
118 1 0.01
119 3 0.02
120 145 0.81
121 29 0.16
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.41
Consensus pattern (119 bp):
TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAATA
ATTATTATTAAATATAATTTAATAAAAAATATAATTTAATAAAATTCTTAATAT
Found at i:39164569 original size:13 final size:13
Alignment explanation
Indices: 39164553--39164582 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
39164543 TAGACCAAGC
39164553 TTTTCAAAAGCAT
1 TTTTCAAAAGCAT
*
39164566 TTTTCATAAGCAT
1 TTTTCAAAAGCAT
39164579 TTTT
1 TTTT
39164583 TTGCAGCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.50
Consensus pattern (13 bp):
TTTTCAAAAGCAT
Found at i:39166816 original size:46 final size:46
Alignment explanation
Indices: 39166667--39166842 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
39166657 TCACTTGTGT
* * * **
39166667 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCA-C-ATTATAA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCATCGA-GACGA
* * *
39166713 GAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGA
* * * *
39166761 GTGCTAGTGTCAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACG-A
39166808 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
39166843 TAAACGTTGT
Statistics
Matches: 108, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
46 58 0.54
47 32 0.30
48 17 0.16
49 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGA
Found at i:39177156 original size:25 final size:25
Alignment explanation
Indices: 39177128--39177222 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
39177118 CTCTTTTAAT
* *
39177128 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
39177153 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
39177178 AAATGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
39177203 AACTAGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
39177223 AGCACTTCCT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:39177158 original size:50 final size:49
Alignment explanation
Indices: 39177103--39177223 Score: 136
Period size: 50 Copynumber: 2.4 Consensus size: 49
39177093 TTTATCATAT
* * *
39177103 AACTGGAGGCCTAGCCTCTTTTAAT-AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGG-GGCATAGCC-CTTTTAATAAAATGGGGCAAAGCCCTTTTCGATA
* ** *
39177153 AACTGGGGCAAAGCCCTTTTCGGTAAAATGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCATAGCCCTTTT-AATAAAATGGGGCAAAGCCCTTTTCGATA
*
39177203 AACTAGGGCATAGCCCTTTTA
1 AACTGGGGCATAGCCCTTTTA
39177224 GCACTTCCTC
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
48 5 0.08
49 8 0.14
50 46 0.78
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (49 bp):
AACTGGGGCATAGCCCTTTTAATAAAATGGGGCAAAGCCCTTTTCGATA
Found at i:39177455 original size:27 final size:27
Alignment explanation
Indices: 39177425--39177666 Score: 270
Period size: 27 Copynumber: 9.0 Consensus size: 27
39177415 GGGGCAAAAT
* * *
39177425 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
39177452 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
39177479 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * * *
39177506 AATAATTCTACCTTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
39177533 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
39177560 GGTAATTCTACCCTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
39177587 AGTAATTCTACCCTACAAGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
39177614 GGTAATTTTACCCTAGAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
39177641 AGTAGTTCTATCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
39177667 TGATATTTTA
Statistics
Matches: 182, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 3 0.02
27 175 0.96
28 4 0.02
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:39177697 original size:26 final size:27
Alignment explanation
Indices: 39177659--39177864 Score: 159
Period size: 27 Copynumber: 7.7 Consensus size: 27
39177649 TATCCTACAG
* *
39177659 GGGTATTTTGAT-ATTTTACAAATCGA
1 GGGTATTTTGATAATTTTACAAACCAA
* * * * *
39177685 GAGTATTTTGATAATTTCAGAAATCAG
1 GGGTATTTTGATAATTTTACAAACCAA
* * *
39177712 GGGTATTTTGGTATTTTTACAAGCCAA
1 GGGTATTTTGATAATTTTACAAACCAA
*
39177739 GGGTATTTCGATAATTTTACAAACCAA
1 GGGTATTTTGATAATTTTACAAACCAA
* *
39177766 GGGTATTTT-AGTAATTTTACAAACTAG
1 GGGTATTTTGA-TAATTTTACAAACCAA
*** ***
39177793 GGGTATTTTCG-TAATTTTATTGATTGA
1 GGGTATTTT-GATAATTTTACAAACCAA
* **
39177820 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGATAATTTTACAAACCAA
39177847 GGGTATTTT-AGTAATTTT
1 GGGTATTTTGA-TAATTTT
39177865 GTAAATCGAA
Statistics
Matches: 141, Mismatches: 33, Indels: 11
0.76 0.18 0.06
Matches are distributed among these distances:
26 13 0.09
27 128 0.91
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGATAATTTTACAAACCAA
Found at i:39177781 original size:81 final size:81
Alignment explanation
Indices: 39177659--39177863 Score: 211
Period size: 81 Copynumber: 2.5 Consensus size: 81
39177649 TATCCTACAG
* * * *
39177659 GGGTATTTTGAT-ATTTTACAAATCGAGAGTATTTT-GATAATTTCAGAAA-TCAGGGGTATTTT
1 GGGTATTTTGATAATTTTACAAACCAAGGGTATTTTAG-TAATTTCACAAACT-AGGGGTATTTT
* *
39177721 GGTATTTTTACAAG-CCAA
64 CGTAATTTTA-AAGACCAA
* *
39177739 GGGTATTTCGATAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTCG
1 GGGTATTTTGATAATTTTACAAACCAAGGGTATTTTAGTAATTTCACAAACTAGGGGTATTTTCG
** ***
39177804 TAATTTTATTGATTGA
66 TAATTTTAAAGACCAA
* **
39177820 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTT
1 GGGTATTTTGATAATTTTACAAACCAAGGGTATTTTAGTAATTT
39177864 TGTAAATCGA
Statistics
Matches: 104, Mismatches: 17, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
80 12 0.12
81 90 0.87
82 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
GGGTATTTTGATAATTTTACAAACCAAGGGTATTTTAGTAATTTCACAAACTAGGGGTATTTTCG
TAATTTTAAAGACCAA
Found at i:39177878 original size:27 final size:26
Alignment explanation
Indices: 39177750--39177878 Score: 87
Period size: 27 Copynumber: 4.8 Consensus size: 26
39177740 GGTATTTCGA
* *
39177750 TAATTTTACAAACCAAGGGTATTTTAG
1 TAATTTTATAAACGAA-GGTATTTTAG
* * * *
39177777 TAATTTTACAAACTAGGGGTATTTTCG
1 TAATTTTATAAACGA-AGGTATTTTAG
* ** * *
39177804 TAATTTTATTGATTGAGGGTATTTTGG
1 TAATTTTA-TAAACGAAGGTATTTTAG
* *
39177831 TAATTTTGTAAACCAAGGGTATTTTAG
1 TAATTTTATAAACGAA-GGTATTTTAG
*
39177858 TAATTTTGTAAATCGAAGGTA
1 TAATTTTATAAA-CGAAGGTA
39177879 AAACGGTAAT
Statistics
Matches: 81, Mismatches: 17, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.04
27 73 0.90
28 5 0.06
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
TAATTTTATAAACGAAGGTATTTTAG
Found at i:39177887 original size:27 final size:27
Alignment explanation
Indices: 39177857--39178051 Score: 246
Period size: 27 Copynumber: 7.2 Consensus size: 27
39177847 GGGTATTTTA
* * *
39177857 GTAATTTTGTAAATCGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * **
39177884 GTAATTTTGTAAATCAAATGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * * *
39177911 GTAATTCTATAAATCGATGGTAACACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
39177938 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
39177965 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
39177992 ATAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
39178019 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
39178046 GTAATT
1 GTAATT
39178052 AAAATAGTAA
Statistics
Matches: 146, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:39177887 original size:54 final size:54
Alignment explanation
Indices: 39177829--39178136 Score: 276
Period size: 54 Copynumber: 5.5 Consensus size: 54
39177819 AGGGTATTTT
* * *** * *
39177829 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAAGGTAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAAC
* ** * * * *
39177883 GGTAATTTTGTAAATCAAATGTAAAATGGTAATTCTATAAATCGATGGTAACAC
1 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAAC
* *
39177937 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAAC
* * *
39177991 GATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATG
1 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAA-C
* * * *
39178046 GTAATTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAAC
1 G-----------GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAAC
*
39178111 GGTAATTTTGTAAATCGAA-GGTAAAA
1 GGTAATTCTGTAAATC-AAGGGTAAAA
39178137 CGGTAATTTT
Statistics
Matches: 211, Mismatches: 30, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
54 160 0.76
55 2 0.01
65 1 0.00
66 48 0.23
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (54 bp):
GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:39177913 original size:81 final size:81
Alignment explanation
Indices: 39177828--39178051 Score: 250
Period size: 81 Copynumber: 2.8 Consensus size: 81
39177818 GAGGGTATTT
* * * *** * * * *
39177828 TGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAAGGTAAAACGGTAATTTTG
1 TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTG
*
39177893 TAAATCAAATGTAAAA
66 TAAATCAAAGGTAAAA
* * * ** * *
39177909 TGGTAATTCTATAAATCGATGGTAACACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTG
1 TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTG
* *
39177974 TAAATCGAGGGTAAAA
66 TAAATCAAAGGTAAAA
* *
39177990 CGATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATT
39178052 AAAATAGTAA
Statistics
Matches: 115, Mismatches: 28, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 115 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (81 bp):
TGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTG
TAAATCAAAGGTAAAA
Found at i:39178055 original size:39 final size:39
Alignment explanation
Indices: 39178012--39178090 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
39178002 AAATCGAGGG
39178012 TAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAAT
1 TAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAAT
39178051 TAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAAT
1 TAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAAT
39178090 T
1 T
39178091 TTATAAATCG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.43, C:0.05, G:0.20, T:0.32
Consensus pattern (39 bp):
TAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAAT
Found at i:39178065 original size:93 final size:93
Alignment explanation
Indices: 39177958--39178144 Score: 293
Period size: 93 Copynumber: 2.0 Consensus size: 93
39177948 AAATCGAGGG
* *
39177958 TAAAATAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGTAA
1 TAAAATAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAA
* *
39178023 TTCTGTAAATCGAGGGTAAAATGGTAAT
66 TTCTGTAAATCGAAGGTAAAACGGTAAT
* * * *
39178051 TAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAA
1 TAAAATAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAA
*
39178116 TTTTGTAAATCGAAGGTAAAACGGTAAT
66 TTCTGTAAATCGAAGGTAAAACGGTAAT
39178144 T
1 T
39178145 TTACAAATTG
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 85 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (93 bp):
TAAAATAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAA
TTCTGTAAATCGAAGGTAAAACGGTAAT
Found at i:39178067 original size:66 final size:66
Alignment explanation
Indices: 39177993--39178117 Score: 214
Period size: 66 Copynumber: 1.9 Consensus size: 66
39177983 GGTAAAACGA
* *
39177993 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTAAAATA
1 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTAAAATA
39178058 G
66 G
* *
39178059 TAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATT
1 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATT
39178118 TTGTAAATCG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (66 bp):
TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTAAAATA
G
Found at i:39178152 original size:27 final size:27
Alignment explanation
Indices: 39178058--39178158 Score: 139
Period size: 27 Copynumber: 3.7 Consensus size: 27
39178048 AATTAAAATA
* * *
39178058 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAACG
39178085 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
* *
39178112 GTAATTTTGTAAATCGAAGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
* *
39178139 GTAATTTTACAAATTGAGGG
1 GTAATTTTATAAATCGAGGG
39178159 CATTTCAGTA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.31
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAACG
Found at i:39178158 original size:120 final size:120
Alignment explanation
Indices: 39177938--39178158 Score: 325
Period size: 120 Copynumber: 1.8 Consensus size: 120
39177928 TGGTAACACG
*
39177938 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTA
* * **
39178003 AATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTAAAATA
66 AATCGAAGGTAAAACAGTAATTCTACAAATCGAGGGTAAAATGGTAATTAAAATA
* * * * *
39178058 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTA
1 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTA
* * *
39178123 AATCGAAGGTAAAACGGTAATTTTACAAATTGAGGG
66 AATCGAAGGTAAAACAGTAATTCTACAAATCGAGGG
39178159 CATTTCAGTA
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
120 88 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (120 bp):
GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTA
AATCGAAGGTAAAACAGTAATTCTACAAATCGAGGGTAAAATGGTAATTAAAATA
Found at i:39178170 original size:54 final size:54
Alignment explanation
Indices: 39178052--39178178 Score: 146
Period size: 54 Copynumber: 2.4 Consensus size: 54
39178042 AATGGTAATT
* * * * * *
39178052 AAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGT
1 AAAACAGTAATTTTGTAAATCGAAGGTAAAACGGTAATTTTACAAATCGAGGGC
* *
39178106 AAAACGGTAATTTTGTAAATCGAAGGTAAAACGGTAATTTTACAAATTGAGGGC
1 AAAACAGTAATTTTGTAAATCGAAGGTAAAACGGTAATTTTACAAATCGAGGGC
*** *
39178160 ATTTCAGTAATTTGGTAAA
1 AAAACAGTAATTTTGTAAA
39178179 CTAAAGTATT
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.31
Consensus pattern (54 bp):
AAAACAGTAATTTTGTAAATCGAAGGTAAAACGGTAATTTTACAAATCGAGGGC
Found at i:39180399 original size:46 final size:44
Alignment explanation
Indices: 39180342--39180517 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 44
39180332 TCACTTGTGT
*
39180342 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTA-GA
*
39180388 GAGCCAGTGTAAGACCATGTCTGGGACCTGGCATCGG--CATTGAGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-AGA
* * *
39180433 CGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CC-TCGAGA
1 -GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCAT-TAGA
*
39180479 CGTAAGCCAGTGTAAGACAAGTCTGGGACATGCATCGGC
1 -G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
39180518 TAAACGTTAT
Statistics
Matches: 110, Mismatches: 9, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
45 6 0.05
46 58 0.53
47 27 0.25
48 19 0.17
ACGTcount: A:0.27, C:0.22, G:0.31, T:0.21
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGA
Found at i:39180589 original size:50 final size:49
Alignment explanation
Indices: 39180532--39180658 Score: 159
Period size: 50 Copynumber: 2.6 Consensus size: 49
39180522 CGTTATGTTT
* * *
39180532 GTATAAGACCATGTCTGGGATATGGCATCGACAC-AGAT-ATGCGAGAGCTA
1 GTATAAGACCATGTCTGGGACATGGCATCAAC-CTAGATGATG-G-GAGCCA
* *
39180582 GTATAAGACCATGTCTGGGACATGGCATCAACCTCGATGATGGTAGCCA
1 GTATAAGACCATGTCTGGGACATGGCATCAACCTAGATGATGGGAGCCA
*
39180631 GTGTAAGACCATGTCTGGGACATGGCAT
1 GTATAAGACCATGTCTGGGACATGGCAT
39180659 AGGCATCTTA
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
49 32 0.46
50 34 0.49
51 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (49 bp):
GTATAAGACCATGTCTGGGACATGGCATCAACCTAGATGATGGGAGCCA
Found at i:39191327 original size:47 final size:47
Alignment explanation
Indices: 39191259--39191424 Score: 196
Period size: 47 Copynumber: 3.6 Consensus size: 47
39191249 GCAAATGTCT
*
39191259 GAACTCGTTGAGTTGAATCCGAGTTCGTGAGATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCC
* * * * * *
39191306 GAGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGTGA--A--CATTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
* *
39191352 AAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCC
39191399 GAACTCGTTGAGTTGAGTCCGAGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC
39191425 ATTATGGATG
Statistics
Matches: 96, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 27 0.28
47 52 0.54
48 3 0.03
50 6 0.06
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCC
Found at i:39191373 original size:93 final size:90
Alignment explanation
Indices: 39191209--39191470 Score: 337
Period size: 93 Copynumber: 2.8 Consensus size: 90
39191199 ATATTTGAGT
* * *
39191209 ATCCGAACTCGTTGAGTTGAGTCCTAGTTCATTTATAGATGCAAATGTCTGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGGAAAT-TC-GAACTCGTTGAGTTG
* *
39191274 AATCCGAGTTCGTGAGATGTAACTAGGC
63 AGTCCGAGTTCGTGAAATGTAACTAGGC
* * *
39191302 ATCCGAGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGTGAACATTCAAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATG-GAA-ATTCGAACTCGTTGAGTTG
39191367 AGTCCGAGTTCGTGAAATGTAACTAGGC
63 AGTCCGAGTTCGTGAAATGTAACTAGGC
* * *
39191395 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCG-AATGCCCGATCTCATTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATG-GAAAT--TCGAACTCGTTGAGTTG
39191459 AGTCCGAGTTCG
63 AGTCCGAGTTCG
39191471 CTTATGGGCG
Statistics
Matches: 149, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
90 2 0.01
91 1 0.01
92 35 0.23
93 105 0.70
94 4 0.03
95 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (90 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGGAAATTCGAACTCGTTGAGTTGAGT
CCGAGTTCGTGAAATGTAACTAGGC
Found at i:39194439 original size:15 final size:15
Alignment explanation
Indices: 39194416--39194475 Score: 59
Period size: 15 Copynumber: 4.0 Consensus size: 15
39194406 GTATCGTATC
*
39194416 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
39194431 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
* ** *
39194446 CTAGG-TTTCTCAATC
1 -TTGGATTTCTTTATT
39194461 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
39194476 CAATTTTCTT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
14 3 0.09
15 28 0.82
16 3 0.09
ACGTcount: A:0.13, C:0.12, G:0.15, T:0.60
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:39197254 original size:46 final size:46
Alignment explanation
Indices: 39197196--39197354 Score: 151
Period size: 46 Copynumber: 3.4 Consensus size: 46
39197186 TTTGAGCATT
* *
39197196 CGAACTCGTTGAGTTGAGTCAGAGTTCATTTATGGATGCGAACGTC
1 CGAAATCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGTC
* * * * * * *
39197242 CGAAATCGTTGAGTTGAGTCCGAGTTCGTGTGATGTA-ACTAGGCATC
1 CGAAATCGTTGAGTTGAGTCCGAGTTCAT-TTATGGATGCGA-ACGTC
** * * *
39197289 CGAGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAACGTT
1 CGAAATCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGTC
39197335 C-AAACTCGTTGAGTTGAGTC
1 CGAAA-TCGTTGAGTTGAGTC
39197355 TAAGTTCGTG
Statistics
Matches: 85, Mismatches: 24, Indels: 8
0.73 0.21 0.07
Matches are distributed among these distances:
45 1 0.01
46 50 0.59
47 34 0.40
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
CGAAATCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGTC
Found at i:39197307 original size:93 final size:93
Alignment explanation
Indices: 39197191--39197447 Score: 354
Period size: 93 Copynumber: 2.8 Consensus size: 93
39197181 AGATATTTGA
* * *
39197191 GCATTCGAACTCGTTGAGTTGAGTCAGAGTTCATTTATGGATGCGAACGTCCGAAA-TCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-AAACTCGTTGAG
* ** *
39197255 TTGAGTCCGAGTTCGTGTGATGTAACTAG
65 TTGAGTCCAAGTTCGTGAAATATAACTAG
* * *
39197284 GCATCCGAGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAACGTTCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAGT
*
39197349 TGAGTCTAAGTTCGTGAAATATAACTAG
66 TGAGTCCAAGTTCGTGAAATATAACTAG
* ** * *
39197377 GCATCCGAACTCGTTGAGTTGAGTCCGTGTTCACTTATGGATGCGAACACCCAAGCTCCTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAGT
39197442 TGAGTC
66 TGAGTC
39197448 TGAGTTCACT
Statistics
Matches: 144, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
92 3 0.02
93 141 0.98
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATATAACTAG
Found at i:39197361 original size:46 final size:46
Alignment explanation
Indices: 39197198--39197462 Score: 144
Period size: 46 Copynumber: 5.7 Consensus size: 46
39197188 TGAGCATTCG
*
39197198 AACTCGTTGAGTTGAGT-CAGAGTTCATTTATGGATGCGAACGTCCGA
1 AACTCGTTGAGTTGAGTCCA-AGTTCACTTATGGATGCGAACGTCC-A
* * * * * * * *
39197245 AA-TCGTTGAGTTGAGTCCGAGTTC-GTGTGATGTA-ACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCAAGTTCACT-T-ATGGATGCGA-ACGTCCA
* * * *
39197291 AGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAACGTTCA
1 AACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCA
* * * *** * * * * *
39197337 AACTCGTTGAGTTGAGTCTAAGTTC-GTGAAATATAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCAAGTTCACTTATGGAT-GCGA-ACGTCCA
** **
39197384 AACTCGTTGAGTTGAGTCCGTGTTCACTTATGGATGCGAACACCCA
1 AACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCA
* * **
39197430 AGCTCCTTGAGTTGAGTCTGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCAAGTTCACTTATGG
39197463 GCGGGTTACA
Statistics
Matches: 158, Mismatches: 50, Indels: 21
0.69 0.22 0.09
Matches are distributed among these distances:
45 5 0.03
46 86 0.54
47 62 0.39
48 5 0.03
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCA
Found at i:39199466 original size:3 final size:3
Alignment explanation
Indices: 39199458--39199520 Score: 56
Period size: 3 Copynumber: 21.0 Consensus size: 3
39199448 GTATAATAGG
* * * * *
39199458 ATA ATA ATA ATA ACA ATGA A-A ATG ATA ATA GTA ACA ATA ACA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
39199503 ATA CTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
39199521 TCTAAATTTT
Statistics
Matches: 46, Mismatches: 12, Indels: 4
0.74 0.19 0.06
Matches are distributed among these distances:
2 2 0.04
3 42 0.91
4 2 0.04
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:39199486 original size:21 final size:21
Alignment explanation
Indices: 39199458--39199518 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
39199448 GTATAATAGG
39199458 ATAATAATAATAACAATGAA-A
1 ATAATAATAATAACAAT-AACA
* *
39199479 ATGATAATAGTAACAATAACA
1 ATAATAATAATAACAATAACA
* *
39199500 ATAATACTAATAATAATAA
1 ATAATAATAATAACAATAA
39199519 TATCTAAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 2 0.06
21 31 0.94
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.26
Consensus pattern (21 bp):
ATAATAATAATAACAATAACA
Found at i:39200962 original size:19 final size:19
Alignment explanation
Indices: 39200940--39200978 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
39200930 ATGGAATTTA
*
39200940 TATT-TTTTGTTTTGGTTTT
1 TATTATTTT-TTTGGGTTTT
39200959 TATTATTTTTTTGGGTTTT
1 TATTATTTTTTTGGGTTTT
39200978 T
1 T
39200979 GGGTTTCTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.08, C:0.00, G:0.15, T:0.77
Consensus pattern (19 bp):
TATTATTTTTTTGGGTTTT
Found at i:39201962 original size:23 final size:22
Alignment explanation
Indices: 39201913--39201989 Score: 75
Period size: 23 Copynumber: 3.4 Consensus size: 22
39201903 TAGCTCGTAG
* **
39201913 GAGCTTACTATTTCAGCTCATTG
1 GAGCTTACTAATTCAGCTCA-AA
39201936 GAGCTTACTAATTCAGCTCGAAA
1 GAGCTTACTAATTCAGCTC-AAA
* *
39201959 GAGCTAACT-GTTCAGCTCAATA
1 GAGCTTACTAATTCAGCTCAA-A
39201981 GAGCTTACT
1 GAGCTTACT
39201990 GTTTATCAGC
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
21 2 0.04
22 17 0.37
23 26 0.57
24 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (22 bp):
GAGCTTACTAATTCAGCTCAAA
Found at i:39201975 original size:22 final size:22
Alignment explanation
Indices: 39201924--39201992 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
39201914 AGCTTACTAT
* * * *
39201924 TTCAGCTCATTGGAGCTTACTAA
1 TTCAGCTCAATAGAGCTAACT-G
39201947 TTCAGCTCGAA-AGAGCTAACTG
1 TTCAGCTC-AATAGAGCTAACTG
*
39201969 TTCAGCTCAATAGAGCTTACTG
1 TTCAGCTCAATAGAGCTAACTG
39201991 TT
1 TT
39201993 TATCAGCTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 2 0.05
22 20 0.51
23 16 0.41
24 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (22 bp):
TTCAGCTCAATAGAGCTAACTG
Found at i:39205984 original size:18 final size:18
Alignment explanation
Indices: 39205958--39205992 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
39205948 AGAAATTTGG
*
39205958 TTTGTTTTAATAAAACAT
1 TTTGGTTTAATAAAACAT
*
39205976 TTTGGTTTACTAAAACA
1 TTTGGTTTAATAAAACA
39205993 ATGATTTTGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.46
Consensus pattern (18 bp):
TTTGGTTTAATAAAACAT
Found at i:39206955 original size:19 final size:19
Alignment explanation
Indices: 39206931--39206968 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
39206921 GAAATGAATA
39206931 ATTTCAGGCAAATAGGTTG
1 ATTTCAGGCAAATAGGTTG
39206950 ATTTCAGGCAAATAGGTTG
1 ATTTCAGGCAAATAGGTTG
39206969 GCAATCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32
Consensus pattern (19 bp):
ATTTCAGGCAAATAGGTTG
Found at i:39208155 original size:9 final size:8
Alignment explanation
Indices: 39208125--39208169 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
39208115 AAAGGTTAGG
*
39208125 TTTTTTTC
1 TTTTTTTA
39208133 TTTTTCTTCA
1 TTTTT-TT-A
39208143 TTTTTTTA
1 TTTTTTTA
39208151 TTTTTTTA
1 TTTTTTTA
39208159 -TTTTTTA
1 TTTTTTTA
39208166 TTTT
1 TTTT
39208170 GGGTTGTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
7 7 0.21
8 17 0.52
9 4 0.12
10 5 0.15
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTTA
Found at i:39208517 original size:44 final size:44
Alignment explanation
Indices: 39208460--39209519 Score: 1401
Period size: 44 Copynumber: 24.6 Consensus size: 44
39208450 CCCCGTCTAA
*
39208460 TACAGAGACGCCAAATCCGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
39208504 TACAGATACGCCAAATCTATTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
39208548 TACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
39208592 TATAGAGACACCAAATCTGTTATCTTCGATCTACTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
39208636 TACAAAGATGCCAAATC----ATCTTCGATCTGCTCTCCGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * **
39208676 TACAGAGACGCCAAATCTGTTATCTTTGATCTGCTTTCTACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
39208720 TACAGAGACGCAAAATCTGTTATCTTCGATCTACTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
39208764 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
39208808 TACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
39208852 TACAGAGATGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
39208896 TACTGAGACGCCAAATTTGTTATCTTCGATCTGCTCTCTGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
39208940 TACAGAGATGCCAAATC----ATCTTCAAACTGCTCTTCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
39208980 TACAGAGATGCCAAA-C---CATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * * *
39209020 TACAAAGACGCCAAATCTCTTATCTTTGATCTGCTTTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
39209064 TACAGAGACGCCAAATCTGTTATCTTCGATTTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
**
39209108 TACAGAGATACCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
39209152 TACAAAGATGCCAAATC----ATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
39209192 TACAGAGACACCAAATTTGTTATCTTTGATCTGCTCTCCGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
39209236 TACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
39209280 TACAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCTGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
39209324 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
39209368 TATAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
39209412 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
39209456 TACAGAGATGCCAAATC----ATCTTCGATCTG--CTCC-CCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
39209493 TACAGAGATGCCAAATCTGTTATCTTC
1 TACAGAGACGCCAAATCTGTTATCTTC
39209520 AGCTTGTTGC
Statistics
Matches: 897, Mismatches: 102, Indels: 37
0.87 0.10 0.04
Matches are distributed among these distances:
37 21 0.02
38 4 0.00
39 1 0.00
40 148 0.16
41 7 0.01
44 716 0.80
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.30
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:39209460 original size:516 final size:513
Alignment explanation
Indices: 39208481--39209507 Score: 1667
Period size: 516 Copynumber: 2.0 Consensus size: 513
39208471 CAAATCCGTT
* *
39208481 ATCTTCGATCTGCTCTCCGCCGCTACAGATACGCCAAATCTATTATCTTTGATCTGCTCTCCGCC
1 ATCTTCGATCTGCTCTCCGCCGCTACAAAGACGCCAAATCTATTATCTTTGATCTGCTCTCCGCC
*
39208546 GCTACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTATAGAGACACCAAATCTG
66 GCTACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATCTG
* *
39208611 TTATCTTCGATCTACTCTCTGCCGCTACAAAGATGCCAAATCATCTTCGATCTGCTCTCCGCTGC
131 TTATCTTCGATCTACTCTCCGCCGCTACAAAGATGCCAAATCATCTTCGATCTGCTCTCCGCCGC
* * * *
39208676 TACAGAGACGCCAAATCTGTTATCTTTGATCTGCTTTCTACCGCTACAGAGACGCAAAATCTGTT
196 TACAGAGACACCAAATCTGTTATCTTTGATCTGCTCTCCACCACTACAGAGACGCAAAATCTGTT
*
39208741 ATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCC
261 ATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCTGCC
*
39208806 GCTACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACCGCTACAGAGATGCCAAATCTG
326 GCTACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAATCTG
* * *
39208871 TTATCTTCGATCTACTCTCCGCCGCTACTGAGACGCCAAATTTGTTATCTTCGATCTGCTCTCTG
391 TTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCG
*
39208936 CTGCTACAGAGATGCCAAATCATCTTCAAACTGCTCTTCGCCGCTACAGAGATGCCAAACC
456 CCGCTACAGAGATGCCAAATCATCTTCAAACTGCTC--C-CCGCTACAGAGATGCCAAACC
* * * *
39208997 ATCTTCGATCTGCTCTCTGCCGCTACAAAGACGCCAAATCTCTTATCTTTGATCTGCTTTCTGCC
1 ATCTTCGATCTGCTCTCCGCCGCTACAAAGACGCCAAATCTATTATCTTTGATCTGCTCTCCGCC
* * * *
39209062 GCTACAGAGACGCCAAATCTGTTATCTTCGATTTGCTCTCTGCCGCTACAGAGATACCAAATCTG
66 GCTACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATCTG
*
39209127 TTATCTTCGATCTGCTCTCCGCCGCTACAAAGATGCCAAATCATCTTCGATCTGCTCTCCGCCGC
131 TTATCTTCGATCTACTCTCCGCCGCTACAAAGATGCCAAATCATCTTCGATCTGCTCTCCGCCGC
* * *
39209192 TACAGAGACACCAAATTTGTTATCTTTGATCTGCTCTCCGCCACTACAGAGACGCCAAATCTGTT
196 TACAGAGACACCAAATCTGTTATCTTTGATCTGCTCTCCACCACTACAGAGACGCAAAATCTGTT
* * * *
39209257 ATCTTTGATCTGCTCTCCGTCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCTGTC
261 ATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCTGCC
* ** *
39209322 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTATAGAGACGCCAAATCTG
326 GCTACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAATCTG
* * *
39209387 TTATCTTTGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCG
391 TTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCG
* *
39209452 CCGCTACAGAGATGCCAAATCATCTTCGATCTGCTCCCCGCTACAGAGATGCCAAA
456 CCGCTACAGAGATGCCAAATCATCTTCAAACTGCTCCCCGCTACAGAGATGCCAAA
39209508 TCTGTTATCT
Statistics
Matches: 471, Mismatches: 40, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
513 19 0.04
514 1 0.00
516 451 0.96
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (513 bp):
ATCTTCGATCTGCTCTCCGCCGCTACAAAGACGCCAAATCTATTATCTTTGATCTGCTCTCCGCC
GCTACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACACCAAATCTG
TTATCTTCGATCTACTCTCCGCCGCTACAAAGATGCCAAATCATCTTCGATCTGCTCTCCGCCGC
TACAGAGACACCAAATCTGTTATCTTTGATCTGCTCTCCACCACTACAGAGACGCAAAATCTGTT
ATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCTGCC
GCTACAAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAATCTG
TTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCG
CCGCTACAGAGATGCCAAATCATCTTCAAACTGCTCCCCGCTACAGAGATGCCAAACC
Found at i:39222473 original size:19 final size:20
Alignment explanation
Indices: 39222440--39222479 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
39222430 ATATATATAT
39222440 ATAAAATAAAGAAAAT-AAA
1 ATAAAATAAAGAAAATGAAA
39222459 ATAAAATAACA-AAAATGAAA
1 ATAAAATAA-AGAAAATGAAA
39222479 A
1 A
39222480 ATGAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
ATAAAATAAAGAAAATGAAA
Found at i:39222751 original size:8 final size:8
Alignment explanation
Indices: 39222723--39222767 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
39222713 GAGGTTAGGT
*
39222723 TTTTTTTC
1 TTTTTTTA
39222731 TTTTTCTTCA
1 TTTTT-TT-A
39222741 TTTTTTTA
1 TTTTTTTA
39222749 TTTTTTTA
1 TTTTTTTA
39222757 -TTTTTTA
1 TTTTTTTA
39222764 TTTT
1 TTTT
39222768 GGGTTGTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
7 7 0.21
8 17 0.52
9 4 0.12
10 5 0.15
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTTA
Found at i:39227989 original size:43 final size:43
Alignment explanation
Indices: 39227940--39228142 Score: 309
Period size: 43 Copynumber: 4.7 Consensus size: 43
39227930 TCGATGCCTC
* * * *
39227940 TGTCCCAGACAGGGTCTTACACGAAATC-GAATAACGATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCACAAT-ACAATGCCAA
* *
39227983 TATCCCAGACATGGTCTTACACGTAATCACAAAACAATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAA
39228026 TGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAA
*
39228069 TGTCCTAGACATGGTCTTACACGTAATCACAATACAATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAA
* *
39228112 TGTCCTAGACATGGTCTTACATGTAATCACA
1 TGTCCCAGACATGGTCTTACACGTAATCACA
39228143 TCTCGATAAT
Statistics
Matches: 149, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
43 147 0.99
44 2 0.01
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAA
Found at i:39229654 original size:21 final size:21
Alignment explanation
Indices: 39229613--39229654 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
39229603 GTGAGAATTT
* *
39229613 TTTTTCTAAATATAAATTCTA
1 TTTTTCAAAATATAAAATCTA
39229634 TTTTTCAAAATA-ACAAATCTA
1 TTTTTCAAAATATA-AAATCTA
39229655 CCAATTTCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTTTCAAAATATAAAATCTA
Found at i:39230370 original size:21 final size:21
Alignment explanation
Indices: 39230344--39230392 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
39230334 GAACTCCTAA
* * *
39230344 AATTTTTTGTAAAATTTTTAC
1 AATTTTCTGCAAAATTTCTAC
39230365 AATTTTCTGCAAAATTTCTAC
1 AATTTTCTGCAAAATTTCTAC
39230386 AATTTTC
1 AATTTTC
39230393 CTAGGTGCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.04, T:0.51
Consensus pattern (21 bp):
AATTTTCTGCAAAATTTCTAC
Found at i:39231095 original size:13 final size:13
Alignment explanation
Indices: 39231072--39231105 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
39231062 AAACATATTA
39231072 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
39231086 TAAAATTTTGTGT
1 TAAAATTTTGTGT
39231099 TAGAAAT
1 TA-AAAT
39231106 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:39232457 original size:40 final size:40
Alignment explanation
Indices: 39232409--39232694 Score: 459
Period size: 40 Copynumber: 7.2 Consensus size: 40
39232399 GGACTAAGAT
* *
39232409 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
39232449 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
39232489 CCGAAGGCATTTGTGCGAGTTACTATATCCAGGATAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
39232529 CCGAAGGCATTTGTACGAGTTACTATATCCGGGCCAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
39232569 TCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
39232609 CCGAAGGCATTTGTGCGAGTTCCTATATCCGGGCTAAGT-
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
39232648 CCGAAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCG-AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
39232688 CCGAAGG
1 CCGAAGG
39232695 TACTTGGGTT
Statistics
Matches: 229, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.06
40 215 0.94
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:39235006 original size:57 final size:58
Alignment explanation
Indices: 39234913--39235053 Score: 160
Period size: 57 Copynumber: 2.4 Consensus size: 58
39234903 ATCATATAAT
** * * * **
39234913 AGGATTACTTGTCCAAGCTAAATCTTGTTTCCAACATATGCTCATA-AGAGCTTA-ATC
1 AGGATTACCAGTCCAAGCTAAATCCTATCTATAACATATGCTCA-AGAGAGCTTATATC
* * * *
39234970 AGGATTACCCGTCTAGGCTAAATCCTATCTATAACATATGCTCAAGAGGGCTTATATC
1 AGGATTACCAGTCCAAGCTAAATCCTATCTATAACATATGCTCAAGAGAGCTTATATC
39235028 AGGATTACCAGTCCAAGCTAAATCCT
1 AGGATTACCAGTCCAAGCTAAATCCT
39235054 TTCTGTAATG
Statistics
Matches: 69, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
56 1 0.01
57 42 0.61
58 26 0.38
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.30
Consensus pattern (58 bp):
AGGATTACCAGTCCAAGCTAAATCCTATCTATAACATATGCTCAAGAGAGCTTATATC
Found at i:39236894 original size:37 final size:37
Alignment explanation
Indices: 39236749--39236905 Score: 174
Period size: 37 Copynumber: 4.3 Consensus size: 37
39236739 AGACGTACAA
* * * *
39236749 ACTATCTA-TTGGCAATGTAAAATACGAGAAATGCTT
1 ACTATCTATTTGGCGATATAAAATACAAGAAATGCGT
* * *
39236785 ACTATCCATTTGACGATATAAAATACAAGAAATGCAT
1 ACTATCTATTTGGCGATATAAAATACAAGAAATGCGT
* *
39236822 ACAATCTATTTGGCGATATAAAATGA-AAAAAATGCGT
1 ACTATCTATTTGGCGATATAAAAT-ACAAGAAATGCGT
* *
39236859 ACTATCTATTTGGCGATACAAAATATAAGAAATGCGT
1 ACTATCTATTTGGCGATATAAAATACAAGAAATGCGT
* *
39236896 AATGTCTATT
1 ACTATCTATT
39236906 AAGATGTGAG
Statistics
Matches: 102, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
36 8 0.08
37 93 0.91
38 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.30
Consensus pattern (37 bp):
ACTATCTATTTGGCGATATAAAATACAAGAAATGCGT
Found at i:39239545 original size:27 final size:27
Alignment explanation
Indices: 39239506--39239557 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
39239496 ACGCTCTAAA
*
39239506 GCAATCCAGTTAGAGTATGCTACAAGG
1 GCAATCCAGTTAGAGTATGCCACAAGG
* *
39239533 GCAATTCATTTAGAGTATGCCACAA
1 GCAATCCAGTTAGAGTATGCCACAA
39239558 AGGCTGACAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GCAATCCAGTTAGAGTATGCCACAAGG
Found at i:39240065 original size:201 final size:201
Alignment explanation
Indices: 39239672--39240078 Score: 590
Period size: 201 Copynumber: 2.0 Consensus size: 201
39239662 CGCAGAGAAC
*
39239672 CCCATTAGATAAAATTTCATTCAATAGTTCCTTTTTAGAGTATGTCATGGCGATGGACTTTTTCC
1 CCCATTAGATAAAATGTCATTCAATAGTTCCTTTTTAGAGTATGTCATGGCGATGGACTTTTTCC
* * *
39239737 TTCAGAGCTTCATATCAGAGTTCGTGTTTACTGTCCCAACGGATTTCCTTAATTACCACCGCGGT
66 TTCAGAGCTTCATATCAAAGTTCATGTTTACTGTCCCAACGGACTTCCTTAATTACCACCGCGGT
* ** * **
39239802 GACTCAACTCACTTTACAAACTCTATGTATAAGAATTTCATAACTTTATGTACTAGACACTTTTT
131 GACTCAACTCACTTTACAAACTCTATGTACAAGAATCCCAGAACTGGATGTACTAGACACTTTTT
39239867 ATACAT
196 ATACAT
39239873 CCCATTAGATAAAATGTCATTCAATAGTT-CTTTTTCAGAGTATGTCATGGCGATGGACTTTTTC
1 CCCATTAGATAAAATGTCATTCAATAGTTCCTTTTT-AGAGTATGTCATGGCGATGGACTTTTTC
* * *
39239937 CTTCAGAGCTTCATATCAAAGTTCATGTTTACTGTCCCGA-GGACTTCTTTAATTACCACCTCGG
65 CTTCAGAGCTTCATATCAAAGTTCATGTTTACTGTCCCAACGGACTTCCTTAATTACCACCGCGG
* * *
39240001 TGACTCAACTCACTTTACAAACTCTATGTACCAGATACATCCCAGACCTAGGAT-TTC-A-ACAC
130 TGACTCAACTCACTTTACAAACTCTATGTA-CA-AGA-ATCCCAGAACT-GGATGTACTAGACAC
39240063 TTTTTATACAT
191 TTTTTATACAT
39240074 CCCAT
1 CCCAT
39240079 AGAACTTATT
Statistics
Matches: 185, Mismatches: 16, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
200 57 0.31
201 114 0.62
202 3 0.02
203 9 0.05
204 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (201 bp):
CCCATTAGATAAAATGTCATTCAATAGTTCCTTTTTAGAGTATGTCATGGCGATGGACTTTTTCC
TTCAGAGCTTCATATCAAAGTTCATGTTTACTGTCCCAACGGACTTCCTTAATTACCACCGCGGT
GACTCAACTCACTTTACAAACTCTATGTACAAGAATCCCAGAACTGGATGTACTAGACACTTTTT
ATACAT
Found at i:39245311 original size:47 final size:48
Alignment explanation
Indices: 39245239--39245370 Score: 194
Period size: 47 Copynumber: 2.8 Consensus size: 48
39245229 CTCAATCGAT
* *
39245239 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATC-TCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTTCG
* * *
39245286 AAGTACCTATACTATGGCCCGTAGCCAAATCAAGGTAACTCCTCTTTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTTCG
* *
39245334 AAATACCTATACCATGGCCCGTAGCCAAATAAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
39245371 TCATTCCCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
47 40 0.53
48 36 0.47
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTTCG
Found at i:39261797 original size:21 final size:21
Alignment explanation
Indices: 39261773--39261819 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
39261763 CAAAAAATGC
39261773 ATTACTAATATA-AAAATATAT
1 ATTA-TAATATATAAAATATAT
* *
39261794 ATTATATTATATATAATATAT
1 ATTATAATATATAAAATATAT
39261815 ATTAT
1 ATTAT
39261820 TTTTTGGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTATAATATATAAAATATAT
Found at i:39273662 original size:27 final size:28
Alignment explanation
Indices: 39273613--39273670 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
39273603 TTAAGATATC
*
39273613 ATATATATTGAATATATGAATATCATGT
1 ATATATATTGAATAAATGAATATCATGT
39273641 ATATAT-TTGAATAAATTG-ATATCATGT
1 ATATATATTGAATAAA-TGAATATCATGT
39273668 ATA
1 ATA
39273671 AATGCTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 20 0.71
28 8 0.29
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.43
Consensus pattern (28 bp):
ATATATATTGAATAAATGAATATCATGT
Found at i:39278137 original size:48 final size:46
Alignment explanation
Indices: 39278035--39278352 Score: 277
Period size: 48 Copynumber: 6.7 Consensus size: 46
39278025 TTGGATGTGT
* ** *
39278035 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CATTATGAGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATTAAGATGAGA
* *
39278081 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTAAGATGAGA
* *
39278129 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCT-AGTATGCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-TAAG-ATG-AGA
*
39278176 GCTAGTGTAAGACCATGTCTGGGACATGACATCGGCATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGCATTAAGATGAGA
** * *
39278224 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTCTAGATATGCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-TA-AGATG-AGA
* * ** *
39278272 GCTAGTGTAAGACCTGTCTGGGACATGGATCTAAACCAATAA-ATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC---GGCATTAAGATGAGA
* * *
39278320 GTTAGTGTAAGACCTATCTGGGACATGTCATCG
1 GCTAGTGTAAGACATGTCTGGGACATG-CATCG
39278353 ACATCGATAT
Statistics
Matches: 227, Mismatches: 27, Indels: 36
0.78 0.09 0.12
Matches are distributed among these distances:
46 27 0.12
47 65 0.29
48 117 0.52
49 14 0.06
50 2 0.01
51 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTAAGATGAGA
Found at i:39278201 original size:95 final size:95
Alignment explanation
Indices: 39278035--39278299 Score: 428
Period size: 95 Copynumber: 2.8 Consensus size: 95
39278025 TTGGATGTGT
* * * * *
39278035 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-AGTGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCTAGTATGCA-AGCTAGTGTAAGACCATG
39278098 TCTGGGACATGGCATCGGCATTAAGACGAGA
65 TCTGGGACATGGCATCGGCATTAAGACGAGA
39278129 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCTAGTATGCAAGCTAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCTAGTATGCAAGCTAGTGTAAGACCATGT
*
39278194 CTGGGACATGACATCGGCATTAAGACGAGA
66 CTGGGACATGGCATCGGCATTAAGACGAGA
*
39278224 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTCTAGATATGCAAGCTAGTGTAAGACC-TG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCTAG-TATGCAAGCTAGTGTAAGACCATG
39278288 TCTGGGACATGG
65 TCTGGGACATGG
39278300 ATCTAAACCA
Statistics
Matches: 160, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
94 35 0.22
95 103 0.64
96 22 0.14
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (95 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCTAGTATGCAAGCTAGTGTAAGACCATGT
CTGGGACATGGCATCGGCATTAAGACGAGA
Found at i:39278340 original size:96 final size:94
Alignment explanation
Indices: 39278035--39278351 Score: 374
Period size: 95 Copynumber: 3.3 Consensus size: 94
39278025 TTGGATGTGT
** * * * *
39278035 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-AGTGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTCTAGTATGCA-AGCTAGTGTAAGACCATG
* * *
39278098 TCTGGGACATGGCATCGGCATTAAGACGAGA
65 TCTGGGACATGACAAC-GCAATAAGACGAGA
*
39278129 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCTAGTATGCAAGCTAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTCTAGTATGCAAGCTAGTGTAAGACCATGT
* *
39278194 CTGGGACATGACATCGGCATTAAGACGAGA
66 CTGGGACATGACAAC-GCAATAAGACGAGA
39278224 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTCTAGATATGCAAGCTAGTGTAAGACC-TG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTCTAG-TATGCAAGCTAGTGTAAGACCATG
*
39278288 TCTGGGACATGGATCTAAAC-CAATAA-ATGAGA
65 TCTGGGACAT-GA-C--AACGCAATAAGACGAGA
* * *
39278320 GTTAGTGTAAGACCTATCTGGGACATGTCATC
1 GCTAGTGTAAGACATGTCTGGGACATG-CATC
39278352 GACATCGATA
Statistics
Matches: 202, Mismatches: 13, Indels: 13
0.89 0.06 0.06
Matches are distributed among these distances:
94 35 0.17
95 102 0.50
96 53 0.26
97 10 0.05
99 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTCTAGTATGCAAGCTAGTGTAAGACCATGT
CTGGGACATGACAACGCAATAAGACGAGA
Found at i:39286938 original size:48 final size:48
Alignment explanation
Indices: 39286885--39287102 Score: 164
Period size: 48 Copynumber: 4.5 Consensus size: 48
39286875 GAGTGCCAGC
*
39286885 GTAAGACCATGTCTGGGACATGGCATCGACTTTAAGACGAGAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGACTTTAAGACGAGAACTAGT
* * * *
39286933 GTAAGA-CATGTCTGGGACAT-GTATCGACCTCAAGA-TATGCAAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGACTTTAAGACGA-G-AA-CTAGT
* ** * * *
39286981 GTAAGACC-TGTCTGGGACATGGCATCAGCCTCGATATATGA-AATTCAGT
1 GTAAGACCATGTCTGGGACATGGCATC-GACTTTA-AGACGAGAACT-AGT
* *
39287030 GTAAGACC-TGCCTGGGACATGGCATCGAC-TT-AGACATGTGAACTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGACTTTAAGAC--GAGAACTAGT
* * *
39287077 GTAAGATCATGTTTGGAACATGGCAT
1 GTAAGACCATGTCTGGGACATGGCAT
39287103 TGGCATCGTA
Statistics
Matches: 132, Mismatches: 25, Indels: 26
0.72 0.14 0.14
Matches are distributed among these distances:
45 3 0.02
46 13 0.10
47 26 0.20
48 49 0.37
49 35 0.27
50 3 0.02
51 2 0.02
52 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACATGGCATCGACTTTAAGACGAGAACTAGT
Found at i:39287035 original size:49 final size:49
Alignment explanation
Indices: 39286885--39287058 Score: 187
Period size: 49 Copynumber: 3.6 Consensus size: 49
39286875 GAGTGCCAGC
* * * *
39286885 GTAAGACCATGTCTGGGACATGGCATCGACTTTAAG--ACGAGAGCTAGT
1 GTAAGACC-TGTCTGGGACATGGCATCGACCTCAAGATATGAAAGCTAGT
* * *
39286933 GTAAGACATGTCTGGGACAT-GTATCGACCTCAAGATATGCAAGCTAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACCTCAAGATATGAAAGCTAGT
* * *
39286981 GTAAGACCTGTCTGGGACATGGCATC-AGCCTCGATATATGAAA-TTCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGA-CCTCAAGATATGAAAGCT-AGT
*
39287030 GTAAGACCTGCCTGGGACATGGCATCGAC
1 GTAAGACCTGTCTGGGACATGGCATCGAC
39287059 TTAGACATGT
Statistics
Matches: 106, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
46 11 0.10
47 12 0.11
48 37 0.35
49 45 0.42
50 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCGACCTCAAGATATGAAAGCTAGT
Found at i:39292883 original size:13 final size:13
Alignment explanation
Indices: 39292865--39292904 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
39292855 CATGCAAATT
39292865 AAGAAAGAAAAGA
1 AAGAAAGAAAAGA
39292878 AAGAAAGAAAAGA
1 AAGAAAGAAAAGA
**
39292891 AAGGGAGAAAAGA
1 AAGAAAGAAAAGA
39292904 A
1 A
39292905 GTCACGCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
AAGAAAGAAAAGA
Found at i:39297117 original size:30 final size:30
Alignment explanation
Indices: 39297076--39297143 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
39297066 ACATGGATAG
*
39297076 ACACACAGGTATATGTCTAGGCCATGTGTA
1 ACACACGGGTATATGTCTAGGCCATGTGTA
* * *
39297106 ACACACGGGTATGTGTCTAGGCCGTGTGTG
1 ACACACGGGTATATGTCTAGGCCATGTGTA
39297136 ACACACGG
1 ACACACGG
39297144 TGTAACACCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (30 bp):
ACACACGGGTATATGTCTAGGCCATGTGTA
Found at i:39298301 original size:29 final size:24
Alignment explanation
Indices: 39298249--39298295 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
39298239 TATGATGCAT
39298249 TGCATCGGGGTAGGTTTGATGAAG
1 TGCATCGGGGTAGGTTTGATGAAG
39298273 TGCATCGGGGTAGGTTTGATGAA
1 TGCATCGGGGTAGGTTTGATGAA
39298296 AAGAAGGGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.09, G:0.40, T:0.30
Consensus pattern (24 bp):
TGCATCGGGGTAGGTTTGATGAAG
Found at i:39305377 original size:45 final size:46
Alignment explanation
Indices: 39305281--39305453 Score: 207
Period size: 45 Copynumber: 3.9 Consensus size: 46
39305271 TTTTCTCAAA
* * * * *
39305281 TCACTGGCATT-TCGCCTGCTAGGATCG--AGGCCCGATTA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAGT-ATC
*
39305324 TCATCGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAGTATC
* *
39305369 TCACCGGCATTATAGCCTGCTAGGC-CCAAAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAGTATC
*
39305414 TCACCGGCATAATAGCCTGCTAGGCTC-AAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATA
39305454 TAATACCAGC
Statistics
Matches: 114, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
43 9 0.08
44 18 0.16
45 84 0.74
46 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (46 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAGTATC
Found at i:39305494 original size:38 final size:38
Alignment explanation
Indices: 39305446--39305720 Score: 381
Period size: 38 Copynumber: 7.2 Consensus size: 38
39305436 GGCTCAAAGG
* * *
39305446 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
39305484 CCCGGATATAATACCAGCACGAAGCCTGCGGGAATTAAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
*
39305523 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
39305561 CCAGGATATAATACCAGCACGAAGCTTGCGGGAATTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
39305599 CCCGGATATATTACCAGCACGAAACCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
39305637 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * **
39305675 CCCGGATATAATTCCAGCA-TATAGCCTGCGGTCTTTAA
1 CCCGGATATAATACCAGCACGA-AGCCTGCGGGATTTAA
*
39305713 GCCGGATA
1 CCCGGATA
39305721 CAAATATCAT
Statistics
Matches: 213, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
37 1 0.00
38 176 0.83
39 36 0.17
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:39306098 original size:43 final size:44
Alignment explanation
Indices: 39305990--39306124 Score: 175
Period size: 43 Copynumber: 3.1 Consensus size: 44
39305980 ATATAACATT
*
39305990 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAAT-A
* * *
39306036 T-ATTTCACCGGCATCATAGCCTACTAAGCTCAAAGCCCG-ATA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATA
* * *
39306078 TCATTTCATCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAATA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATA
39306122 TCA
1 TCA
39306125 CATTTCAATA
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
42 2 0.03
43 34 0.44
44 10 0.13
45 30 0.39
46 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (44 bp):
TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATA
Found at i:39310709 original size:39 final size:39
Alignment explanation
Indices: 39310655--39310878 Score: 358
Period size: 39 Copynumber: 5.7 Consensus size: 39
39310645 TGTGTGAGAT
* *
39310655 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
39310694 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* * *
39310733 TTTTATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
39310772 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* * * *
39310811 TTATATCCGGGCTAAGTCCCGAAGGTATTCATGTTGATG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
*
39310850 TTATATCCGGGCTAAGTTCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
39310879 TGGGTTGGAA
Statistics
Matches: 171, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 171 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
Found at i:39316131 original size:40 final size:40
Alignment explanation
Indices: 39316063--39316140 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
39316053 TGCGGTACCT
*
39316063 TATGATGTGTAGGGATGGATGGGACGATTGTATCCCCATA
1 TATGATGTGCAGGGATGGATGGGACGATTGTATCCCCATA
* * *
39316103 TATGGTGTGCAGGGATCGG-TGGGTCGATTTTATCCCCA
1 TATGATGTGCAGGGAT-GGATGGGACGATTGTATCCCCA
39316141 CATGGTGTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 31 0.94
41 2 0.06
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (40 bp):
TATGATGTGCAGGGATGGATGGGACGATTGTATCCCCATA
Found at i:39324220 original size:42 final size:42
Alignment explanation
Indices: 39324174--39324261 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
39324164 CAATATGTAC
* *
39324174 GAAGGGGTTACATTCAAATACTATAGTTTCAGATTGCATATT
1 GAAGGGGTGACATTCAAATACCATAGTTTCAGATTGCATATT
39324216 GAAGGGGTGACATTCAAATACCATAGTTTCAGATTGCATATT
1 GAAGGGGTGACATTCAAATACCATAGTTTCAGATTGCATATT
39324258 GAAG
1 GAAG
39324262 TGTGTTTGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (42 bp):
GAAGGGGTGACATTCAAATACCATAGTTTCAGATTGCATATT
Found at i:39329363 original size:11 final size:11
Alignment explanation
Indices: 39329349--39329398 Score: 68
Period size: 11 Copynumber: 4.7 Consensus size: 11
39329339 TTTCAATATT
39329349 CTCTCAAATTC
1 CTCTCAAATTC
39329360 CTCTCAAA-T-
1 CTCTCAAATTC
*
39329369 CTCTCAAATTT
1 CTCTCAAATTC
*
39329380 CTCTTAAATTC
1 CTCTCAAATTC
39329391 CTCTCAAA
1 CTCTCAAA
39329399 ACTCTCGTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 8 0.24
10 2 0.06
11 24 0.71
ACGTcount: A:0.30, C:0.32, G:0.00, T:0.38
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:39329373 original size:20 final size:21
Alignment explanation
Indices: 39329341--39329398 Score: 73
Period size: 20 Copynumber: 2.7 Consensus size: 21
39329331 CTTCAATCTT
39329341 TCAATATTCTCTCAAATTCCTC
1 TCAA-ATTCTCTCAAATTCCTC
*
39329363 TCAAA-TCTCTCAAATTTCTC
1 TCAAATTCTCTCAAATTCCTC
*
39329383 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
39329399 ACTCTCGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 18 0.56
21 2 0.06
22 12 0.38
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTCCTC
Found at i:39330575 original size:7 final size:7
Alignment explanation
Indices: 39330563--39330589 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
39330553 TAGTGGATTC
39330563 GTATTTA
1 GTATTTA
39330570 GTATTTA
1 GTATTTA
39330577 GTATTTA
1 GTATTTA
39330584 GTATTT
1 GTATTT
39330590 TTTATTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (7 bp):
GTATTTA
Found at i:39331229 original size:18 final size:18
Alignment explanation
Indices: 39331206--39331248 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
39331196 TGTCAGGTAC
39331206 GTATCCTAGCCCTTT-TAT
1 GTATCCTAG-CCTTTATAT
39331224 GTATCCTAGCCTTTATAT
1 GTATCCTAGCCTTTATAT
*
39331242 GTTTCCT
1 GTATCCT
39331249 TTTTCTAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.16, C:0.26, G:0.12, T:0.47
Consensus pattern (18 bp):
GTATCCTAGCCTTTATAT
Found at i:39331899 original size:116 final size:116
Alignment explanation
Indices: 39331633--39332246 Score: 1052
Period size: 116 Copynumber: 5.3 Consensus size: 116
39331623 TATTTGTACA
* *
39331633 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGCAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
39331698 TGTAATTTACTTTTATATTTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATA-TTTTTAATAAAATGGAAATTATTTTAAATAAGGC
39331750 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* * *
39331815 TATAATTTATTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGAC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
39331866 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAA-GTTG-TTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
39331929 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGT
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
39331980 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
39332045 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* * * *
39332096 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAAAGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* ** * * *
39332161 TATAATTTACTTTTATATTTTTAATAAAATAAAAATTATTTTAAGTAAAGT
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
39332212 AATATTTTGAATATTTTTATATTATTTCATGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAAT
39332247 AAAATATAAA
Statistics
Matches: 473, Mismatches: 22, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
114 106 0.22
115 8 0.02
116 281 0.59
117 78 0.16
ACGTcount: A:0.40, C:0.03, G:0.09, T:0.48
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:39332039 original size:230 final size:231
Alignment explanation
Indices: 39331633--39332246 Score: 1059
Period size: 230 Copynumber: 2.6 Consensus size: 231
39331623 TATTTGTACA
* *
39331633 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGCAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAA-GTTGTTTTAAATAAAGTAAT
*
39331698 TGTAATTTACTTTTATATTTTTTAATAAAATGGAAATTATTTTAAATAAGGCAACATTTTGAATA
65 TGTAATTTACTTTTATA-TTTTTAATAAAATGGAAATTATTTTAAATAAGGTAACATTTTGAATA
*
39331763 TTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTATTTT
129 TTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTACTTT
39331828 TATATTTTTAATAAAATGGAAATTATTTTAAATAAGAC
194 TATATTTTTAATAAAATGGAAATTATTTTAAATAAGAC
39331866 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGTTG-TTTAAATAAAGTAATT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGTTGTTTTAAATAAAGTAATT
39331930 GTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGTAACATTTTGAATATT
66 GTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGTAACATTTTGAATATT
*
39331995 TTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAATTGTAATTTACTTTTA
131 TTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTACTTTTA
*
39332060 TATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
196 TATTTTTAATAAAATGGAAATTATTTTAAATAAGAC
* * *
39332096 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAAAGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGAT-AAAAGTTGTTTTAAATAAAGTAAT
* ** * * *
39332161 TATAATTTACTTTTATATTTTTAATAAAATAAAAATTATTTTAAGTAAAGTAATATTTTGAATAT
65 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGTAACATTTTGAATAT
39332226 TTTTATATTATTTCATGTAAT
130 TTTTATATTATTTCATGTAAT
39332247 AAAATATAAA
Statistics
Matches: 364, Mismatches: 15, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
230 183 0.50
231 39 0.11
232 99 0.27
233 43 0.12
ACGTcount: A:0.40, C:0.03, G:0.09, T:0.48
Consensus pattern (231 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGTTGTTTTAAATAAAGTAATT
GTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGTAACATTTTGAATATT
TTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAATTATAATTTACTTTTA
TATTTTTAATAAAATGGAAATTATTTTAAATAAGAC
Found at i:39335498 original size:126 final size:126
Alignment explanation
Indices: 39335281--39335813 Score: 795
Period size: 126 Copynumber: 4.2 Consensus size: 126
39335271 CAGAAACCAC
*
39335281 TGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTG
1 TGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTG
*** *
39335346 AAGCGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACCAT
66 AAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTAT
* * *
39335407 TGTAGCAAAAGAGCATCCACGTGAGAGCTTCTTCCAGTAATTTTGCTGAAAATGCATCCTGCTTG
1 TGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTG
* * *
39335472 AAGTGTTTTT-ACCACTATTTGCGCAGACACGTTTTCTCAAAATTATTTTTTCAGAGACTAT
66 AAGCGTTTTTGA-CACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTAT
* * **
39335533 TATAGCAAAAGAGCATCCACGTG-GAAGCTTCTTTCAGTACTTTTGCTGGCAATGCATCCTGCTT
1 TGTAGCAAAAGAGCGTCCACGTGAG-AGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTT
* * *
39335597 GAAGCGTTTTTTACACTATTTGCACAGACACGTCTTCTAAAAATTA-TTTTTCAGATACTAT
65 GAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTAT
* * *
39335658 TGTAGCAAAAGAGCGTCCACGTGGGAGTTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCTTG
1 TGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTG
* *
39335723 AAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAATTTATTTTTTCAGAGACTAC
66 AAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTAT
*
39335784 TGTAGCAGAAGAGCGTCCACGT-AGAAGCTT
1 TGTAGCAAAAGAGCGTCCACGTGAG-AGCTT
39335814 TTTTAGATTA
Statistics
Matches: 370, Mismatches: 31, Indels: 12
0.90 0.08 0.03
Matches are distributed among these distances:
125 118 0.32
126 251 0.68
127 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (126 bp):
TGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTG
AAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTAT
Found at i:39335781 original size:251 final size:252
Alignment explanation
Indices: 39335268--39335813 Score: 817
Period size: 251 Copynumber: 2.2 Consensus size: 252
39335258 GCCCAAGTTA
* * * *
39335268 TTTCAGAAACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
1 TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
** *
39335333 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTTTTTC
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTACACAGACACGTCTTCTAAAAATTATTTTTTC
39335398 AGAGACCATTGTAGCAAAAGAGCATCCACGTGAGAGCTTCTTCCAGTAATTTTGCTGAAAATGCA
131 AGAGACCATTGTAGCAAAAGAGCATCCACGTGAGAGCTTCTTCCAGTAATTTTGCTGAAAATGCA
* * *
39335463 TCCTGCTTGAAGTGTTTTTACCACTATTTGCGCAGACACGTTTTCTCAAAATTATTT
196 TCCTGCTTGAAGCGTTTTTACCACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* * **
39335520 TTTCAGAGACTATTATAGCAAAAGAGCATCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGGCAA
1 TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
* *
39335585 TGCATCCTGCTTGAAGCGTTTTTTACACTATTTGCACAGACACGTCTTCTAAAAATTA-TTTTTC
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTACACAGACACGTCTTCTAAAAATTATTTTTTC
* * * * * * * *
39335649 AGATACTATTGTAGCAAAAGAGCGTCCACGTGGGAGTTTCTTTCAGTACTTTTGCTGACAATGCA
131 AGAGACCATTGTAGCAAAAGAGCATCCACGTGAGAGCTTCTTCCAGTAATTTTGCTGAAAATGCA
*
39335714 TCCTGCTTGAAGCGTTTTTGA-CACTATTTGCACAGACACGTCTTCTCAAATTTATTT
196 TCCTGCTTGAAGCGTTTTT-ACCACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* * *
39335771 TTTCAGAGACTACTGTAGCAGAAGAGCGTCCACGTAGAAGCTT
1 TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGAAGCTT
39335814 TTTTAGATTA
Statistics
Matches: 263, Mismatches: 30, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
251 152 0.58
252 111 0.42
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (252 bp):
TTTCAGAGACTACTATAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTACACAGACACGTCTTCTAAAAATTATTTTTTC
AGAGACCATTGTAGCAAAAGAGCATCCACGTGAGAGCTTCTTCCAGTAATTTTGCTGAAAATGCA
TCCTGCTTGAAGCGTTTTTACCACTATTTGCACAGACACGTCTTCTCAAAATTATTT
Found at i:39336103 original size:15 final size:15
Alignment explanation
Indices: 39336083--39336126 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
39336073 ATTTTTTTCC
39336083 TTAAAACCCTAAAAT
1 TTAAAACCCTAAAAT
* *
39336098 TTAAAAACCAAAAAT
1 TTAAAACCCTAAAAT
39336113 TCTCAAAACCCTAA
1 T-T-AAAACCCTAA
39336127 CCTTAATTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 14 0.61
16 1 0.04
17 8 0.35
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (15 bp):
TTAAAACCCTAAAAT
Found at i:39336106 original size:16 final size:17
Alignment explanation
Indices: 39336085--39336126 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
39336075 TTTTTTCCTT
39336085 AAAACCCTAAAATT-TA
1 AAAACCCTAAAATTCTA
* *
39336101 AAAA-CCAAAAATTCTC
1 AAAACCCTAAAATTCTA
39336117 AAAACCCTAA
1 AAAACCCTAA
39336127 CCTTAATTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 8 0.38
16 9 0.43
17 4 0.19
ACGTcount: A:0.57, C:0.24, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAACCCTAAAATTCTA
Found at i:39342185 original size:23 final size:23
Alignment explanation
Indices: 39342138--39342185 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
39342128 TTGGTACTCC
*
39342138 TAGGACACACTTAAACATACCAT
1 TAGGACACACTTAAACATACAAT
*
39342161 TAGGATACA-TTAAACATACTAAT
1 TAGGACACACTTAAACATAC-AAT
39342184 TA
1 TA
39342186 TCATGTCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.27
Consensus pattern (23 bp):
TAGGACACACTTAAACATACAAT
Found at i:39344460 original size:48 final size:48
Alignment explanation
Indices: 39344348--39344516 Score: 146
Period size: 48 Copynumber: 3.6 Consensus size: 48
39344338 TGATATGTGT
* * * ** *
39344348 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTACGA-GA
1 GCTAGTGTAAAACATGTCTAGGACATGCATCGGCCTCGAGAGAC-ACAA
* * * * * *
39344394 GCCAATGTAAAACATGTCTCGGACATGTATCGGCTTTGAGAGACACAA
1 GCTAGTGTAAAACATGTCTAGGACATGCATCGGCCTCGAGAGACACAA
* * *
39344442 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAAACATGTCTAGGACATGCATCGGCCTCGAGAGACACAA
* * *
39344490 GCTAGTGTAACACCTGTCTGGGACATG
1 GCTAGTGTAAAACATGTCTAGGACATG
39344517 GAATCGACAC
Statistics
Matches: 97, Mismatches: 23, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
46 29 0.30
47 2 0.02
48 66 0.68
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAAACATGTCTAGGACATGCATCGGCCTCGAGAGACACAA
Found at i:39344597 original size:49 final size:48
Alignment explanation
Indices: 39344351--39344619 Score: 176
Period size: 49 Copynumber: 5.6 Consensus size: 48
39344341 TATGTGTGCT
* * * *
39344351 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-AT-TACGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGATATATGAAAG-C
* * * * * * * * *
39344397 AATGTAAAACATGTCTCGGACAT-GTATCGGCTTTGAGAGA-CACAAGC
1 AGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGATATATGA-AAGC
*
39344444 TAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGAGATAT-ACAAGC
1 -AGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGATATATGA-AAGC
* * * * * * *
39344492 TAGTGTAACACCTGTCTGGGACATGGAATCGACAC-CGATAGATGAGAGCC
1 -AGTGTAAGACATGTCTAGGACATGGCATCGGC-CTCGATATATGAAAG-C
* * * * *
39344542 AATGTAAGACCTGTCTGGGACACGGCATCGGCCTCAATATATGAAAGTC
1 AGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGATATATGAAAG-C
39344591 AGTGTAAGACATGTCTAGGACATGGCATC
1 AGTGTAAGACATGTCTAGGACATGGCATC
39344620 AACTTTGATG
Statistics
Matches: 174, Mismatches: 39, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
46 27 0.16
47 3 0.02
48 64 0.37
49 77 0.44
50 3 0.02
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGATATATGAAAGC
Found at i:39352231 original size:48 final size:46
Alignment explanation
Indices: 39352170--39352336 Score: 176
Period size: 48 Copynumber: 3.5 Consensus size: 46
39352160 TATGAGAGTC
* *
39352170 AGTGTAAGACATGTCTGGGACAGGCATAGGCCTCGAGAGACACAAGCT
1 AGTGTAAGACATGTTTGGGACATGCATA-GCCTCGAGA-ACACAAGCT
* ** * *
39352218 AGTGTAAGACATGTTTGGGACATGTATCAGTATTGA-AACGA-GAGCT
1 AGTGTAAGACATGTTTGGGACATGCAT-AGCCTCGAGAAC-ACAAGCT
* *
39352264 AGTGTAAGACATGTGTGGGACATGCATTAGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTTTGGGACATGCA-TAGCCTCGAGA-ACACAAGCT
*
39352312 AGTGTAAGACCTGTTTGGGACATGC
1 AGTGTAAGACATGTTTGGGACATGC
39352337 GTCTGTAACA
Statistics
Matches: 97, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
46 35 0.36
47 5 0.05
48 56 0.58
49 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTTTGGGACATGCATAGCCTCGAGAACACAAGCT
Found at i:39353507 original size:23 final size:21
Alignment explanation
Indices: 39353435--39353509 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
39353425 CCTGATCAGT
** *
39353435 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTA
* * *
39353456 AAACTACGCACGAGGTGCCTA
1 ATACGACACACGAGGTGCCTA
*
39353477 ATATGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCT--A
39353500 ATACGACACA
1 ATACGACACA
39353510 TAAAGTGCCT
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
21 31 0.76
23 10 0.24
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTA
Found at i:39353517 original size:23 final size:23
Alignment explanation
Indices: 39353435--39353521 Score: 67
Period size: 23 Copynumber: 4.0 Consensus size: 23
39353425 CCTGATCAGT
*
39353435 ATACGACACATAAAGTGCCTAAA
1 ATACGACACATAAAGTGCCTGAA
* *
39353458 ACTACG-CAC--GAGGTGCCT--A
1 A-TACGACACATAAAGTGCCTGAA
* ** *
39353477 ATATGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
39353500 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
39353522 TCAGTAAAGC
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
18 3 0.06
19 5 0.10
21 16 0.31
23 23 0.45
24 4 0.08
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:39355500 original size:49 final size:49
Alignment explanation
Indices: 39355446--39355622 Score: 164
Period size: 49 Copynumber: 3.6 Consensus size: 49
39355436 TGTTGTGTGT
* *
39355446 CAGTGTAAGACTTGTTTGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACTTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
* * * *
39355495 CAGTGTAAGACCTATCTGGGACATGGCATC-AGCCTCGATATATGAAAGT
1 CAGTGTAAGACTTGTCTGGGACATGGCATCGA-CCTCGATAGATGAAAGC
* * * * **
39355544 TAGTGTAAGACTTGTCTAGGACATGGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
* * *
39355591 TAGTGTAAGACCATGTCTAGGACATGGCATCG
1 CAGTGTAAGA-CTTGTCTGGGACATGGCATCG
39355623 GCATCTTATT
Statistics
Matches: 107, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
47 14 0.13
48 22 0.21
49 70 0.65
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (49 bp):
CAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:39357135 original size:169 final size:169
Alignment explanation
Indices: 39356856--39357196 Score: 646
Period size: 169 Copynumber: 2.0 Consensus size: 169
39356846 CCACATGGGC
*
39356856 TATGCCCCTATCTCGAGTTGCATTTTTTTAAAGTCTTTAAAGATGTTCAGTTTAATCCCGGATAG
1 TATGCCCCTATCTCGAGTTACATTTTTTTAAAGTCTTTAAAGATGTTCAGTTTAATCCCGGATAG
*
39356921 TTTCCCAAGGATGATTTGGGCCTTGTAGGCTCGTATTGAGAATTTTTAGATTAAGAGCGAAAAGT
66 TTTCCCAAGGATGATTTGGGCATTGTAGGCTCGTATTGAGAATTTTTAGATTAAGAGCGAAAAGT
*
39356986 TTTAAATTTGATCTAGTTTTTATAACTCAGAAATGTTCG
131 TTTAAATTTGATCTAGTTTTTATAACTCAGAAATGATCG
39357025 TATGCCCCTATCTCGAGTTACATTTTTTTAAAGTCTTTAAAGATGTTCAGTTTAATCCCGGATAG
1 TATGCCCCTATCTCGAGTTACATTTTTTTAAAGTCTTTAAAGATGTTCAGTTTAATCCCGGATAG
*
39357090 TTTCCCAAGGATGATTTGGGCATTGTAGGCTCGTATTGAGAATTTTTAGATTAAGAGTGAAAAGT
66 TTTCCCAAGGATGATTTGGGCATTGTAGGCTCGTATTGAGAATTTTTAGATTAAGAGCGAAAAGT
39357155 TTTAAATTTGATCTAGTTTTTATAACTCAGAAATGATCG
131 TTTAAATTTGATCTAGTTTTTATAACTCAGAAATGATCG
39357194 TAT
1 TAT
39357197 ACATGCGCTT
Statistics
Matches: 168, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
169 168 1.00
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.39
Consensus pattern (169 bp):
TATGCCCCTATCTCGAGTTACATTTTTTTAAAGTCTTTAAAGATGTTCAGTTTAATCCCGGATAG
TTTCCCAAGGATGATTTGGGCATTGTAGGCTCGTATTGAGAATTTTTAGATTAAGAGCGAAAAGT
TTTAAATTTGATCTAGTTTTTATAACTCAGAAATGATCG
Found at i:39362897 original size:26 final size:26
Alignment explanation
Indices: 39362858--39362941 Score: 75
Period size: 26 Copynumber: 3.3 Consensus size: 26
39362848 AGTAGTTCCA
**
39362858 AGTGAAACAAGGTGTATAGAAGCTTT
1 AGTGAAACGGGGTGTATAGAAGCTTT
* * *
39362884 AGTGAAACGGGGTGTTTTG-A-TTTT
1 AGTGAAACGGGGTGTATAGAAGCTTT
* **
39362908 AGTGAAA-TGGGCATATAGAAGCTTT
1 AGTGAAACGGGGTGTATAGAAGCTTT
39362933 AGTGAAACG
1 AGTGAAACG
39362942 AAGCATTTTG
Statistics
Matches: 43, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
23 6 0.14
24 11 0.26
25 11 0.26
26 15 0.35
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (26 bp):
AGTGAAACGGGGTGTATAGAAGCTTT
Found at i:39364222 original size:28 final size:27
Alignment explanation
Indices: 39364164--39364224 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 27
39364154 AAAAATATTT
*
39364164 AAAAATTTAAAAATTCTAAAACAATATAA
1 AAAAATTTAAAAAGTCTAAAA-AA-ATAA
* *
39364193 AAATATATAAAAAGT-TAAAAAAATAA
1 AAAAATTTAAAAAGTCTAAAAAAATAA
39364219 AAAAAT
1 AAAAAT
39364225 CAAAATAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 9 0.32
27 2 0.07
28 5 0.18
29 12 0.43
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (27 bp):
AAAAATTTAAAAAGTCTAAAAAAATAA
Found at i:39364356 original size:15 final size:16
Alignment explanation
Indices: 39364327--39364356 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
39364317 TTGAAAAAGT
39364327 TTTCAAATATATTTGG
1 TTTCAAATATATTTGG
39364343 TTTCAAAT-TATTTG
1 TTTCAAATATATTTG
39364357 CTCTATCACG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (16 bp):
TTTCAAATATATTTGG
Found at i:39365399 original size:3 final size:3
Alignment explanation
Indices: 39365391--39365465 Score: 150
Period size: 3 Copynumber: 25.0 Consensus size: 3
39365381 GCCTTTGGTG
39365391 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
39365439 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
39365466 TGCATTTTAT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:39365781 original size:1 final size:1
Alignment explanation
Indices: 39365775--39365802 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
39365765 TGATATTCAG
39365775 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
39365803 AAATCTTAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:39368804 original size:23 final size:23
Alignment explanation
Indices: 39368776--39368823 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
39368766 TTAACAAGTA
39368776 AAAACTCATTCTAACAAAACATC
1 AAAACTCATTCTAACAAAACATC
39368799 AAAACTCATTCTAACAAAACATC
1 AAAACTCATTCTAACAAAACATC
39368822 AA
1 AA
39368824 TCAATTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.54, C:0.25, G:0.00, T:0.21
Consensus pattern (23 bp):
AAAACTCATTCTAACAAAACATC
Found at i:39370357 original size:24 final size:24
Alignment explanation
Indices: 39370327--39370417 Score: 119
Period size: 24 Copynumber: 3.8 Consensus size: 24
39370317 TTTGACATTT
39370327 AAATCCGCACACATAGTGCTATAC
1 AAATCCGCACACATAGTGCTATAC
* *
39370351 AAGTCCGCACACATAGTGCCATAC
1 AAATCCGCACACATAGTGCTATAC
* * * *
39370375 AATTTCACACACATAGTGCTATTC
1 AAATCCGCACACATAGTGCTATAC
*
39370399 AAATTCGCACACATAGTGC
1 AAATCCGCACACATAGTGC
39370418 CGAAGTCAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.23
Consensus pattern (24 bp):
AAATCCGCACACATAGTGCTATAC
Found at i:39370779 original size:11 final size:11
Alignment explanation
Indices: 39370763--39370789 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
39370753 TAAAACTTGA
39370763 TTTTTTATTTT
1 TTTTTTATTTT
39370774 TTTTTTATTTT
1 TTTTTTATTTT
39370785 TTTTT
1 TTTTT
39370790 CACCTTAGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTTTTATTTT
Found at i:39370891 original size:10 final size:10
Alignment explanation
Indices: 39370876--39370902 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
39370866 ATAAAACACC
39370876 TATATATATG
1 TATATATATG
39370886 TATATATATG
1 TATATATATG
39370896 TATATAT
1 TATATAT
39370903 GGTAACCACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (10 bp):
TATATATATG
Found at i:39372004 original size:30 final size:30
Alignment explanation
Indices: 39371968--39372027 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
39371958 TTTGAACCGA
39371968 ATCATACAACATCTTAGTGTCCCTATTATG
1 ATCATACAACATCTTAGTGTCCCTATTATG
39371998 ATCATACAACATCTTAGTGTCCCTATTATG
1 ATCATACAACATCTTAGTGTCCCTATTATG
39372028 GGCCTACGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (30 bp):
ATCATACAACATCTTAGTGTCCCTATTATG
Found at i:39372247 original size:13 final size:13
Alignment explanation
Indices: 39372229--39372253 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
39372219 CCAAGCACAC
39372229 GCCCGTGTCCTTG
1 GCCCGTGTCCTTG
39372242 GCCCGTGTCCTT
1 GCCCGTGTCCTT
39372254 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCCGTGTCCTTG
Found at i:39386778 original size:28 final size:28
Alignment explanation
Indices: 39386738--39386892 Score: 292
Period size: 28 Copynumber: 5.5 Consensus size: 28
39386728 TAAATTGTAC
39386738 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
39386766 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
39386794 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
39386822 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
39386850 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
39386878 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
39386893 GACTTAATAT
Statistics
Matches: 125, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 125 1.00
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:39390059 original size:50 final size:48
Alignment explanation
Indices: 39389943--39390128 Score: 191
Period size: 50 Copynumber: 3.8 Consensus size: 48
39389933 CTGGTACGCA
* *
39389943 TAGTAGCCTGCACTTAGTACTACACATGCGACAAT-A-GTCTGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGAC-CTCACATCTGTACACG
* *
39389990 TAGTAGCCTGCACTTAGTACTACACATGTGACCTCACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCA-CATCT-GTACACG
* * * * *
39390040 TAGTAGCCTGCACTTAGTACTACACACGTGA--TCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCACA----TC-TGTACACG
39390091 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCACA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCACA
39390129 ATAGATCATT
Statistics
Matches: 117, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
46 1 0.01
47 34 0.29
48 3 0.03
49 3 0.03
50 36 0.31
51 35 0.30
53 5 0.04
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTCACATCTGTACACG
Found at i:39390116 original size:101 final size:97
Alignment explanation
Indices: 39389943--39390127 Score: 262
Period size: 101 Copynumber: 1.9 Consensus size: 97
39389933 CTGGTACGCA
* * *
39389943 TAGTAGCCTGCACTTAGTACTACACATGCGACAATAGTCTGTACACGTAGTAGCCTGCACTTAGT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACAATAGTCGGTACACATAGTAGCCTGCACTTAGT
*
39390008 ACTACACATGTGACCTCACCATCTAATACACG
66 ACTACACATGCGACCTCACCATCTAATACACG
* ** *
39390040 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CA-A-TAGTC-GGTACACATAGTAGCCTGCACT
39390105 TAGTACTACACATGCGACCTCAC
62 TAGTACTACACATGCGACCTCAC
39390128 AATAGATCAT
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
97 29 0.38
98 2 0.03
99 1 0.01
100 3 0.04
101 41 0.54
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (97 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACAATAGTCGGTACACATAGTAGCCTGCACTTAGT
ACTACACATGCGACCTCACCATCTAATACACG
Found at i:39404313 original size:25 final size:22
Alignment explanation
Indices: 39404267--39404313 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
39404257 CATCTCAATT
*
39404267 CACATATTCACAAACACATAAG
1 CACATATTCACAAAAACATAAG
39404289 CACATAGTTCACAAGATAACATAAG
1 CACATA-TTCACAA-A-AACATAAG
39404314 TATGAGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 7 0.33
24 1 0.05
25 7 0.33
ACGTcount: A:0.49, C:0.23, G:0.09, T:0.19
Consensus pattern (22 bp):
CACATATTCACAAAAACATAAG
Found at i:39405486 original size:26 final size:26
Alignment explanation
Indices: 39405450--39405501 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
39405440 ATTCAATTAC
39405450 TCAATTTTCCTTAAAACGTGTTTTAT
1 TCAATTTTCCTTAAAACGTGTTTTAT
*
39405476 TCAATTTTCCTTAAAATGTGTTTTAT
1 TCAATTTTCCTTAAAACGTGTTTTAT
39405502 AGTCGAAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.13, G:0.08, T:0.52
Consensus pattern (26 bp):
TCAATTTTCCTTAAAACGTGTTTTAT
Found at i:39410226 original size:71 final size:70
Alignment explanation
Indices: 39410076--39410236 Score: 178
Period size: 71 Copynumber: 2.3 Consensus size: 70
39410066 TGAGCCTATG
* * * * * * **
39410076 GGCCACACGGGCGTGCGAGTTTTTGGGCTATGCCGTGTGGGCCACATGGGTAAGGCAAATCTGGT
1 GGCCACACGGGCGTGTGGGGTTTTGAGCTAGGCCGTATGGGCCACACAGGTAAGGCAAATCTGGT
*
39410141 TGTGT
66 TGTAT
* * * *
39410146 GTGCTACACGGGTGTGTGGGGTTTTGAGCTAGGCTGTATGGGCCACACAGGTAAGGCCAATCTGG
1 G-GCCACACGGGCGTGTGGGGTTTTGAGCTAGGCCGTATGGGCCACACAGGTAAGGCAAATCTGG
39410211 TTGTAT
65 TTGTAT
*
39410217 AGGCCACACGAGCGTGTGGG
1 -GGCCACACGGGCGTGTGGG
39410237 CCCAAACAGG
Statistics
Matches: 73, Mismatches: 16, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
70 1 0.01
71 71 0.97
72 1 0.01
ACGTcount: A:0.17, C:0.19, G:0.39, T:0.25
Consensus pattern (70 bp):
GGCCACACGGGCGTGTGGGGTTTTGAGCTAGGCCGTATGGGCCACACAGGTAAGGCAAATCTGGT
TGTAT
Found at i:39413734 original size:19 final size:21
Alignment explanation
Indices: 39413712--39413751 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
39413702 CGTTCTGGCA
*
39413712 GCCTCGCTACA-A-TCTGGTG
1 GCCTCGCCACATACTCTGGTG
39413731 GCCTCGCCACATACTCTGGTG
1 GCCTCGCCACATACTCTGGTG
39413752 ACTTCGTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 1 0.06
21 7 0.39
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.25
Consensus pattern (21 bp):
GCCTCGCCACATACTCTGGTG
Found at i:39421172 original size:27 final size:26
Alignment explanation
Indices: 39421128--39421179 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
39421118 CTCGCTGCAA
*
39421128 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
39421155 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
39421180 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:39424935 original size:43 final size:43
Alignment explanation
Indices: 39424887--39424983 Score: 185
Period size: 43 Copynumber: 2.3 Consensus size: 43
39424877 TTGGTTTTCA
39424887 GCACTAAGTGTGAGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGAGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
39424930 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGAGGGCAATAAGTGTTCACGGTTGTGAGATTG
39424973 GCACTAAGTGT
1 GCACTAAGTGT
39424984 ACGGGCTTGA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.25, C:0.13, G:0.34, T:0.28
Consensus pattern (43 bp):
GCACTAAGTGTGAGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:39425042 original size:29 final size:29
Alignment explanation
Indices: 39424971--39425044 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
39424961 GTTGTGAGAT
* * *
39424971 TGGCACTAAGTGTACGGGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
*
39425000 TGGCACTAAGTGTGCGAG-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TACA
39425029 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
39425045 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATACA
Found at i:39425478 original size:40 final size:40
Alignment explanation
Indices: 39425434--39425537 Score: 154
Period size: 40 Copynumber: 2.6 Consensus size: 40
39425424 GAGTTACTAA
*
39425434 ATCCGGGCTAAGTCCCGAAGAGCATTCAAGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCAAGCTAGTGATAT
* **
39425474 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCAAGCTAGTGATAT
* *
39425514 ATCCGTGCTAAATCCCGAAGAGCA
1 ATCCGGGCTAAGTCCCGAAGAGCA
39425538 ATCATGCTGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCAAGCTAGTGATAT
Found at i:39428981 original size:47 final size:47
Alignment explanation
Indices: 39428920--39429455 Score: 896
Period size: 47 Copynumber: 11.4 Consensus size: 47
39428910 CAGCCAAGAC
*
39428920 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
39428967 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
39429014 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
39429061 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
39429108 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
39429157 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
39429204 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
39429251 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
39429298 AGTGTATATATGTAATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
39429344 AGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * *
39429390 AGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
39429437 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
39429456 TCCCGAAGGG
Statistics
Matches: 468, Mismatches: 17, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
45 12 0.03
46 66 0.14
47 343 0.73
49 47 0.10
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:39429247 original size:190 final size:188
Alignment explanation
Indices: 39428920--39429455 Score: 923
Period size: 190 Copynumber: 2.9 Consensus size: 188
39428910 CAGCCAAGAC
39428920 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
39428985 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
*
39429050 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
131 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
39429108 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
39429173 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
64 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
39429238 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
129 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
39429298 AGTGTATATATGTAATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGT-ATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
* * * * * * *
39429361 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
* * *
39429426 ATGGATGTGAAAGTGCATAAATGTGATAAG
131 ATGAATGTGAAAGTGTATATATGTGATAAG
39429456 TCCCGAAGGG
Statistics
Matches: 333, Mismatches: 13, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
186 89 0.27
187 32 0.10
188 25 0.08
190 187 0.56
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (188 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Done.