Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 127 of 352
Found at i:40707584 original size:12 final size:11
Alignment explanation
Indices: 40707521--40707609 Score: 72
Period size: 12 Copynumber: 7.5 Consensus size: 11
40707511 TGAATCCTCC
*
40707521 TATTTTTTTATT
1 TATTTTATT-TT
40707533 TATTCTTATTTT
1 TATT-TTATTTT
40707545 TATTTTA-TTT
1 TATTTTATTTT
40707555 TATTTTTATTTT
1 TA-TTTTATTTT
*
40707567 TCTTTTGATTTT
1 TATTTT-ATTTT
*
40707579 TATTTTCATTTC
1 TATTTT-ATTTT
*
40707591 AATTTTATTATTT
1 TATTTTA-T-TTT
40707604 TATTTT
1 TATTTT
40707610 GAAAGACATA
Statistics
Matches: 63, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
10 5 0.08
11 13 0.21
12 34 0.54
13 11 0.17
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (11 bp):
TATTTTATTTT
Found at i:40707585 original size:17 final size:16
Alignment explanation
Indices: 40707525--40707599 Score: 71
Period size: 17 Copynumber: 4.5 Consensus size: 16
40707515 TCCTCCTATT
*
40707525 TTTTTATTTAT-TCTTA
1 TTTTTATTT-TCTTTTA
*
40707541 TTTTTATTTTATTTTA
1 TTTTTATTTTCTTTTA
40707557 TTTTTATTTTTCTTTTGA
1 TTTTTA-TTTTCTTTT-A
*
40707575 TTTTTATTTTCATTTCA
1 TTTTTATTTTC-TTTTA
*
40707592 ATTTTATT
1 TTTTTATT
40707600 ATTTTATTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
15 1 0.02
16 19 0.37
17 21 0.41
18 10 0.20
ACGTcount: A:0.17, C:0.05, G:0.01, T:0.76
Consensus pattern (16 bp):
TTTTTATTTTCTTTTA
Found at i:40709347 original size:46 final size:46
Alignment explanation
Indices: 40709291--40709466 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
40709281 TGTTTGGGCA
*
40709291 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
40709337 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
40709382 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
40709430 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
40709467 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 60 0.56
47 28 0.26
48 4 0.04
50 6 0.06
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:40717699 original size:18 final size:19
Alignment explanation
Indices: 40717666--40717703 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
40717656 AAGCTATGTG
*
40717666 TGTTATACGGATGAATTAT
1 TGTTATACGAATGAATTAT
40717685 TGTTAT-CGAATGAATTAT
1 TGTTATACGAATGAATTAT
40717703 T
1 T
40717704 ATTTATATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.32, C:0.05, G:0.18, T:0.45
Consensus pattern (19 bp):
TGTTATACGAATGAATTAT
Found at i:40722797 original size:44 final size:39
Alignment explanation
Indices: 40722760--40722842 Score: 121
Period size: 39 Copynumber: 2.1 Consensus size: 39
40722750 TAAATGCAAA
* *
40722760 ACACATATTAATGATGTGCAAACTATGACATTGTTAAAG
1 ACACATATTAATAATGTGCAAACTATGACATTATTAAAG
* * *
40722799 ACTCATATTAATAATGTTCAAACTATGACATAATTAAAG
1 ACACATATTAATAATGTGCAAACTATGACATTATTAAAG
40722838 ACACA
1 ACACA
40722843 AGCTAAAATA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (39 bp):
ACACATATTAATAATGTGCAAACTATGACATTATTAAAG
Found at i:40724750 original size:49 final size:49
Alignment explanation
Indices: 40724678--40724777 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
40724668 ACGAATCAAG
40724678 AAATTCATCGATGGCAACAAACCAGAACCACAAAGCATTTGAAAATTAT
1 AAATTCATCGATGGCAACAAACCAGAACCACAAAGCATTTGAAAATTAT
40724727 AAATTCATCGATGGCAACAAACCAGAACCACAAAGCATTTGAAAATTAT
1 AAATTCATCGATGGCAACAAACCAGAACCACAAAGCATTTGAAAATTAT
40724776 AA
1 AA
40724778 TCCTGGAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.48, C:0.20, G:0.12, T:0.20
Consensus pattern (49 bp):
AAATTCATCGATGGCAACAAACCAGAACCACAAAGCATTTGAAAATTAT
Found at i:40726835 original size:40 final size:40
Alignment explanation
Indices: 40726780--40727000 Score: 313
Period size: 40 Copynumber: 5.5 Consensus size: 40
40726770 TATTCGAATG
40726780 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* * *
40726820 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAG-TGAAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
*
40726860 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
40726900 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* * * *
40726940 ATATCCGGGCCAAGACCCGAAGGCATTTGTTCGAGTTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* *
40726980 ATAT-CTGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
40727001 ATGCTTGGGT
Statistics
Matches: 164, Mismatches: 14, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
39 15 0.09
40 146 0.89
41 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
Found at i:40736583 original size:28 final size:29
Alignment explanation
Indices: 40736519--40736583 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
40736509 TTTTCATTTA
* *
40736519 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATTGACACT
* *
40736548 TTTCTCAATTTAATCCCT-AATTGACATT
1 TTTCTCAATTTAACCCCTCAATTGACACT
*
40736576 TTTGTCAA
1 TTTCTCAA
40736584 AAATCACTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 15 0.48
29 16 0.52
ACGTcount: A:0.29, C:0.25, G:0.03, T:0.43
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATTGACACT
Found at i:40759239 original size:13 final size:13
Alignment explanation
Indices: 40759221--40759245 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40759211 ATGTAATCGC
40759221 ACACGAGCGTGTT
1 ACACGAGCGTGTT
40759234 ACACGAGCGTGT
1 ACACGAGCGTGT
40759246 CCTTGCCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.20
Consensus pattern (13 bp):
ACACGAGCGTGTT
Found at i:40761289 original size:40 final size:40
Alignment explanation
Indices: 40761219--40761396 Score: 173
Period size: 40 Copynumber: 4.5 Consensus size: 40
40761209 AAGCCAGGTA
** * *
40761219 CCTTCGGGATTTAA-CCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACATAACCCGGATATAG-TAACTCGCACAAATG
** *
40761258 CCTTCGGGACATAGTCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACATAACCCGGATATAGTAACTCGCACAAATG
*
40761298 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACATAACCCGGATATAGTAACTCGCACAAATG
* * * * * *
40761338 CCTTCGGGACTTAGCCCAGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACATAACCCGGATA-TAGTAACTCGCACAAATG
* *
40761378 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACATAACCCGG
40761397 TTATCATCCG
Statistics
Matches: 120, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 13 0.11
40 107 0.89
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACATAACCCGGATATAGTAACTCGCACAAATG
Found at i:40761376 original size:80 final size:80
Alignment explanation
Indices: 40761219--40761396 Score: 225
Period size: 80 Copynumber: 2.2 Consensus size: 80
40761209 AAGCCAGGTA
* * * * * **
40761219 CCTTCGGGATTTAA-CCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGTCCGGATGTAG
1 CCTTCGGGACTTAACCCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCAGAACTAG
*
40761283 TAACTCGCACAAATG
66 TAACTAGCACAAATG
*
40761298 CCTTCGGGACTTAACCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAACTA
1 CCTTCGGGACTTAACCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACATAGCCCAGAACTA
* *
40761362 GTCACTAGCGCAAATG
65 GTAACTAGCACAAATG
*
40761378 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAACCCGG
40761397 TTATCATCCG
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 14 0.16
80 71 0.84
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCAGAACTAG
TAACTAGCACAAATG
Found at i:40769320 original size:40 final size:40
Alignment explanation
Indices: 40769250--40769467 Score: 260
Period size: 40 Copynumber: 5.5 Consensus size: 40
40769240 AAGCCAGCTA
* * * *
40769250 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
40769289 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
40769329 CCTTCGGGACGTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
40769369 CCTTCGAGACTTAACCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** * * *
40769409 CCTTCGGGACTTAGCCCGGAGCTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
40769449 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
40769468 TTATCATCCG
Statistics
Matches: 156, Mismatches: 21, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
39 12 0.08
40 144 0.92
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:40772875 original size:45 final size:45
Alignment explanation
Indices: 40772824--40772911 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
40772814 AGAAAAACTG
*
40772824 ACTTAGCTTTGGACCATGCATATCGACTGATTTGGCTTTGAGCTT
1 ACTTAGCTTTGGACCATGCATATCAACTGATTTGGCTTTGAGCTT
40772869 ACTTAGCTTTGGACCATGCATATCAACTGATTTGGCTTTGAGC
1 ACTTAGCTTTGGACCATGCATATCAACTGATTTGGCTTTGAGC
40772912 CATGATATCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (45 bp):
ACTTAGCTTTGGACCATGCATATCAACTGATTTGGCTTTGAGCTT
Found at i:40777451 original size:14 final size:14
Alignment explanation
Indices: 40777432--40777461 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
40777422 AAGTTCGTAT
40777432 ATGAGCCTAAAATG
1 ATGAGCCTAAAATG
40777446 ATGAGCCTAAAATG
1 ATGAGCCTAAAATG
40777460 AT
1 AT
40777462 CATAATATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.23
Consensus pattern (14 bp):
ATGAGCCTAAAATG
Found at i:40781882 original size:40 final size:40
Alignment explanation
Indices: 40781827--40782049 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
40781817 TATTCGGATG
* *
40781827 ATATCCAGCCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
40781867 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
40781910 ATA-CCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
40781949 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
40781989 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
40782029 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
40782050 ATACTTGGGT
Statistics
Matches: 163, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
39 21 0.13
40 105 0.64
41 1 0.01
42 27 0.17
43 9 0.06
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:40781973 original size:82 final size:80
Alignment explanation
Indices: 40781827--40782049 Score: 292
Period size: 82 Copynumber: 2.8 Consensus size: 80
40781817 TATTCGGATG
* * *
40781827 ATATCCAGCCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCCGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
40781892 TTTGTGCGAGTAGTTG-CT
66 TTTATGC---TAG-TGACT
*
40781910 ATA-CCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCCGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
40781974 TTTATGCTAGTGACT
66 TTTATGCTAGTGACT
* * * *
40781989 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 ATATCCCGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
40782050 ATACTTGGGT
Statistics
Matches: 128, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
78 2 0.02
79 22 0.17
80 36 0.28
81 2 0.02
82 63 0.49
83 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCCGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTATGCTAGTGACT
Found at i:40794664 original size:28 final size:28
Alignment explanation
Indices: 40794599--40794666 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
40794589 ATGGGTGATC
* *
40794599 ACACGGGCGTGTCTAGGCTGTGTGAGGG
1 ACACGGGCGTGTCTAGGCCGTGCGAGGG
**
40794627 ACACAAGCGTGTCTAGGCCGTGCGAGGG
1 ACACGGGCGTGTCTAGGCCGTGCGAGGG
40794655 ACACGGGCGTGT
1 ACACGGGCGTGT
40794667 GCTCAGCCGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.18, C:0.22, G:0.43, T:0.18
Consensus pattern (28 bp):
ACACGGGCGTGTCTAGGCCGTGCGAGGG
Found at i:40799594 original size:16 final size:15
Alignment explanation
Indices: 40799570--40799599 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
40799560 AACTGTTTTA
40799570 TTACAAATTTCACTC
1 TTACAAATTTCACTC
40799585 TTACATAATTTCACT
1 TTACA-AATTTCACT
40799600 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:40801737 original size:40 final size:40
Alignment explanation
Indices: 40801671--40801766 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 40
40801661 ACCATCTCTG
* * *
40801671 TCCAACCCAACACACC-A-TGTGGGGATAAAATCGACCCA
1 TCCAACCCTACACACCAAGTATGGGGATAAAATCAACCCA
*
40801709 -CTCAGCCCTACACACCAAGTATGGGGATAAAATCAACCCA
1 TC-CAACCCTACACACCAAGTATGGGGATAAAATCAACCCA
*
40801749 TCCAACCCTACATACCAA
1 TCCAACCCTACACACCAA
40801767 ATGGTACCGT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
37 1 0.02
38 12 0.25
39 1 0.02
40 33 0.69
41 1 0.02
ACGTcount: A:0.38, C:0.35, G:0.12, T:0.15
Consensus pattern (40 bp):
TCCAACCCTACACACCAAGTATGGGGATAAAATCAACCCA
Found at i:40807781 original size:49 final size:50
Alignment explanation
Indices: 40807718--40807842 Score: 171
Period size: 50 Copynumber: 2.5 Consensus size: 50
40807708 CTGGTACGCA
* * *
40807718 TAGTAGTCTGCACTTAGTACTACACATGCGACC-AACAATCCGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCCGATACACG
* * * *
40807767 TAGTAGCCTACACTTATTACTACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCCGATACACG
*
40807817 TTGTAGCCTACACTTAGTACTACACA
1 TAGTAGCCTACACTTAGTACTACACA
40807843 CGTGATCGAA
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 29 0.44
50 37 0.56
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCCGATACACG
Found at i:40812881 original size:18 final size:17
Alignment explanation
Indices: 40812860--40812900 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
40812850 CTTTTTAATA
40812860 TTTTTAAAAAATTTCATG
1 TTTTTAAAAAATTT-ATG
*
40812878 TTTTAAAAAAAATTTATG
1 TTTT-TAAAAAATTTATG
40812896 TTTTT
1 TTTTT
40812901 TTTTTACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (17 bp):
TTTTTAAAAAATTTATG
Found at i:40815048 original size:23 final size:24
Alignment explanation
Indices: 40814982--40815037 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 24
40814972 AAATATAAAG
* * *
40814982 ATAAAATCAATAATAAAAAAGTTA
1 ATAAAATAAAGAATACAAAAGTTA
40815006 ATAAAATAAAGAATAC-AAAGTTA
1 ATAAAATAAAGAATACAAAAGTTA
*
40815029 ATTAAATAA
1 ATAAAATAA
40815038 GAAAGCAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 15 0.54
24 13 0.46
ACGTcount: A:0.66, C:0.04, G:0.05, T:0.25
Consensus pattern (24 bp):
ATAAAATAAAGAATACAAAAGTTA
Found at i:40817408 original size:12 final size:12
Alignment explanation
Indices: 40817393--40817431 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
40817383 CAACCGCAAA
40817393 AAAAGAAGAAAT
1 AAAAGAAGAAAT
*
40817405 AAAAAAAGAAAT
1 AAAAGAAGAAAT
40817417 AAAAAGAAGAAAT
1 -AAAAGAAGAAAT
40817430 AA
1 AA
40817432 CAACAAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (12 bp):
AAAAGAAGAAAT
Found at i:40817408 original size:13 final size:13
Alignment explanation
Indices: 40817392--40817431 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
40817382 TCAACCGCAA
40817392 AAAAAGAAGAAAT
1 AAAAAGAAGAAAT
40817405 AAAAA-AAGAAAT
1 AAAAAGAAGAAAT
40817417 AAAAAGAAGAAAT
1 AAAAAGAAGAAAT
40817430 AA
1 AA
40817432 CAACAAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.46
13 14 0.54
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.07
Consensus pattern (13 bp):
AAAAAGAAGAAAT
Found at i:40822021 original size:50 final size:50
Alignment explanation
Indices: 40821943--40822587 Score: 602
Period size: 50 Copynumber: 12.9 Consensus size: 50
40821933 ATTGTGAGAA
40821943 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * ** * * * *
40821993 CATATGTGTAGTACTAAGTGTAGGCTACTATGCATACCCGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGT
* * *
40822044 CACGTGTGTAGTACTACA-TGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTA-AGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* *
40822094 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
** * * *
40822144 CGTATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * *
40822194 CACATGTGTAGTTCTAAGTGCAGGCTACTATGTGTATCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * *
40822243 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTAACC-GACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGT-ACCAGA-TAGTT-AGGT
* ** * * *
40822294 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTAAATCAGATGGTTAGTT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
** * * *
40822344 CATGTGTGTAGTACTAAGTGCAAGCTACTACCTGTACCAGATAGTTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * * * * * *
40822394 TACATGTGTAATACTAAGTGCAAGCTACTATGCGTACCCGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGT
* * * *
40822445 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGAATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * * *
40822495 CACGTGTGTAGTACTAAGTGCAGGATACTATGTGTATCAGATTGTT-GAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * *
40822544 CACATGTGTAGTTCTAAGTGCAGGCTACTAAGCGTACCAAATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
40822588 CTTCGGTAAC
Statistics
Matches: 479, Mismatches: 102, Indels: 29
0.79 0.17 0.05
Matches are distributed among these distances:
49 80 0.17
50 293 0.61
51 104 0.22
52 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:40822385 original size:250 final size:252
Alignment explanation
Indices: 40821943--40822573 Score: 797
Period size: 250 Copynumber: 2.5 Consensus size: 252
40821933 ATTGTGAGAA
* *
40821943 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCATATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACATGTGTAGTACT
* ** *
40822008 AAGTGTAGGCTACTATGCATACCCGACAACTTCAATCACGTGTGTAGTACTACA-TGCAGGCTAC
66 AAGTGCAGGCTACTATGTGTAACCGACAACTTCAATCACGTGTGTAGTACTA-AGTGCAGGCTAC
** *
40822072 TACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATA
130 TACGTAAATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATA
** * * * * * *** *
40822137 GTTAGGTCGTATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGA-TGGTT-AGGT
195 GTTAGGTCACATGTGTAATACTAAGTGCAAGCTACTACGCGTACCAGACAACTTCA-AT
* * * * *
40822194 CACATGTGTAGTTCTAAGTGCAGGCTACTATGTGTATCGGATTGTT-GGTCGCATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACATGTGTAGTACT
40822258 AAGTGCAGGCTACTATGTGTAACCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAGGCTACT
66 AAGTGCAGGCTACTATGTGTAACCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
40822323 ACGTAAATCAGATGGTTAGTTCATGTGTGTAGTACTAAGTGCAAGCTACTACCTGTACCAGATAG
131 ACGTAAATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAG
* * * *
40822388 TTTGGTTACATGTGTAATACTAAGTGCAAGCTACTATGCGTACCCGACAACTTCAAT
196 TTAGGTCACATGTGTAATACTAAGTGCAAGCTACTACGCGTACCAGACAACTTCAAT
* * * *
40822445 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGAATCAGATGGTTAGGTCACGTGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACATGTGTAGTACT
* * * *** * * *
40822510 AAGTGCAGGATACTATGTGTATCAGA-TTGTT-GATCACATGTGTAGTTCTAAGTGCAGGCTACT
66 AAGTGCAGGCTACTATGTGTAACCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAGGCTACT
40822573 A
131 A
40822574 AGCGTACCAA
Statistics
Matches: 327, Mismatches: 49, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
249 1 0.00
250 200 0.61
251 86 0.26
252 40 0.12
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (252 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGTGTAACCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAGGCTACT
ACGTAAATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAG
TTAGGTCACATGTGTAATACTAAGTGCAAGCTACTACGCGTACCAGACAACTTCAAT
Found at i:40822462 original size:151 final size:150
Alignment explanation
Indices: 40822043--40822581 Score: 697
Period size: 150 Copynumber: 3.6 Consensus size: 150
40822033 ACAACTTCAA
* * *
40822043 TCACGTGTGTAGTACTACA-TGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTA-AGTGCAGGCTACTATGTGTATCAGATTGTT-GGTCACATGTGTAGTA
*** * * * * *** *
40822107 CTAAGTGCAGGCTACTACATGTACCAGA-TAGTT-AGGTCGTATGTGTAGTACTAAGTGTAGGCT
64 CTAAGTGCAGGCTACTATGCGTACCCGACAACTTCA-ATCACGTGTGTAGTACTAAGTGCAGGCT
*
40822170 ACTACGTGTATCAGATGGTTAGG
128 ACTACGTGAATCAGATGGTTAGG
* * * *
40822193 TCACATGTGTAGTTCTAAGTGCAGGCTACTATGTGTATCGGATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTGGTCACATGTGTAGTACT
* *
40822258 AAGTGCAGGCTACTATGTGTAACCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAGGCTACT
66 AAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAGGCTACT
* *
40822323 ACGTAAATCAGATGGTTAGT
131 ACGTGAATCAGATGGTTAGG
* * ** * * * *
40822343 TCATGTGTGTAGTACTAAGTGCAAGCTACTACCTGTACCAGATAGTTTGGTTACATGTGTAATAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTG-TTGGTCACATGTGTAGTAC
*
40822408 TAAGTGCAAGCTACTATGCGTACCCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAGGCTAC
65 TAAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAGGCTAC
40822473 TACGTGAATCAGATGGTTAGG
130 TACGTGAATCAGATGGTTAGG
* * *
40822494 TCACGTGTGTAGTACTAAGTGCAGGATACTATGTGTATCAGATTGTTGATCACATGTGTAGTTCT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTGGTCACATGTGTAGTACT
*
40822559 AAGTGCAGGCTACTAAGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
40822582 AAATAGCTTC
Statistics
Matches: 334, Mismatches: 51, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
149 39 0.12
150 159 0.48
151 136 0.41
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (150 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAGGCTACT
ACGTGAATCAGATGGTTAGG
Found at i:40829406 original size:47 final size:45
Alignment explanation
Indices: 40829327--40829534 Score: 156
Period size: 46 Copynumber: 4.4 Consensus size: 45
40829317 CGATGCCTTA
* * *
40829327 TCCCAGACAAAGTCTTACACT-AGCTTAT-ATCTCAAGTCGAAGCCATG
1 TCCCAGAC-ATGTCTTACACTGA-C-TATCATCTCAAGCCGATG-CATG
40829374 TCCCAGACATGGTCTTACACTGACTATCATCTCATAGCCGATGCATG
1 TCCCAGACAT-GTCTTACACTGACTATCATCTCA-AGCCGATGCATG
* * * *
40829421 TCCCAGACATGTCTTACATTGGCT-TACGTCTCAAGGCTGATGCATG
1 TCCCAGACATGTCTTACACTGACTAT-CATCTCAA-GCCGATGCATG
* * * **
40829467 TCCTAGACATGTCTTACACT-AGC-ACTCGTCTCAATGCCGGTGCTACA
1 TCCCAGACATGTCTTACACTGA-CTA-TCATCTCAA-GCCGATGC-ATG
40829514 TCCCAGACATGGTCTTACACT
1 TCCCAGACAT-GTCTTACACT
40829535 AGCTGTCACA
Statistics
Matches: 134, Mismatches: 16, Indels: 21
0.78 0.09 0.12
Matches are distributed among these distances:
45 2 0.01
46 65 0.49
47 50 0.37
48 17 0.13
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (45 bp):
TCCCAGACATGTCTTACACTGACTATCATCTCAAGCCGATGCATG
Found at i:40836949 original size:28 final size:28
Alignment explanation
Indices: 40836894--40836951 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 28
40836884 TACAGGGGTT
40836894 TTCACACGGCCTGGCACACGCCCATGTCC
1 TTCACACGGCCTGG-ACACGCCCATGTCC
*
40836923 TTCACACGGCCATGG-CACGCCCGTGTCC
1 TTCACACGGCC-TGGACACGCCCATGTCC
40836951 T
1 T
40836952 AGCCCGTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 13 0.48
29 11 0.41
30 3 0.11
ACGTcount: A:0.16, C:0.43, G:0.22, T:0.19
Consensus pattern (28 bp):
TTCACACGGCCTGGACACGCCCATGTCC
Found at i:40837213 original size:12 final size:12
Alignment explanation
Indices: 40837193--40837226 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
40837183 CTAGACATAC
40837193 ACCCGTGTGTCT
1 ACCCGTGTGTCT
* *
40837205 ACCCATGTGTTT
1 ACCCGTGTGTCT
40837217 ACCCGTGTGT
1 ACCCGTGTGT
40837227 ACAAAATTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.29, G:0.24, T:0.35
Consensus pattern (12 bp):
ACCCGTGTGTCT
Found at i:40838107 original size:46 final size:46
Alignment explanation
Indices: 40838026--40838147 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 46
40838016 CGTAGCCAAC
* ** **
40838026 GCATGTCCTAGACATGTCTTACACTAGCTTACGTCTTGAGG-CTGAT
1 GCATGTCCCAGACATGTCTTACACTAGCACACGTCTCAAGGTC-GAT
* *
40838072 GCATGTCCCAGACATGTCTTACACTAGCACCCGTCTCAATGTCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCACACGTCTCAAGGTCGAT
*
40838118 GCCTCGTCCCAGACATGGTCTTACACTAGC
1 GCAT-GTCCCAGACAT-GTCTTACACTAGC
40838148 TCTCAGAAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
46 40 0.62
47 12 0.18
48 13 0.20
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTACACTAGCACACGTCTCAAGGTCGAT
Found at i:40842353 original size:23 final size:23
Alignment explanation
Indices: 40842327--40842383 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
40842317 ACACCAATAT
*
40842327 CGCAGCATAGCTGCTAATAGTAA
1 CGCAGCAAAGCTGCTAATAGTAA
* * *
40842350 CGCAGTAAAGCTTCTAGTAGTAA
1 CGCAGCAAAGCTGCTAATAGTAA
40842373 CGCAGCAAAGC
1 CGCAGCAAAGC
40842384 CACCAGAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (23 bp):
CGCAGCAAAGCTGCTAATAGTAA
Found at i:40844691 original size:46 final size:46
Alignment explanation
Indices: 40844638--40844758 Score: 124
Period size: 46 Copynumber: 2.6 Consensus size: 46
40844628 TATGTCTGCT
*
40844638 AGTGTAAGACATGTCTGAGACATGCATCGACCATATTATGA-G-AGCC
1 AGTGTAAGACATGTCTGAGACATGCATCGACCAT-TGA-GACGAAGCC
* * *
40844684 AGTGTAAGACATGTCT-AGGAGATGCATC-AGCATTGAGACGACAGCT
1 AGTGTAAGACATGTCTGA-GACATGCATCGACCATTGAGACGA-AGCC
* *
40844730 AGTGTAAGACATGTTTGGGACATGCATCG
1 AGTGTAAGACATGTCTGAGACATGCATCG
40844759 GCCTCGAGAT
Statistics
Matches: 62, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
43 2 0.03
44 3 0.05
45 5 0.08
46 52 0.84
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGAGACATGCATCGACCATTGAGACGAAGCC
Found at i:40844878 original size:49 final size:48
Alignment explanation
Indices: 40844821--40844976 Score: 145
Period size: 48 Copynumber: 3.2 Consensus size: 48
40844811 TCTTGTGTGT
* *
40844821 CAGTGTAAGACCTATCTGGGACATAGCATCAACAC-CGATAAATGAGAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCAAC-CTCGAT-AATGAAAGC
* * ** * *
40844870 CAGTGTAAGACCTATCTAGGACACGGCATCGGCCTCGATTATGAAAGT
1 CAGTGTAAGACCTATCTGGGACATGGCATCAACCTCGATAATGAAAGC
* * * * * **
40844918 CAATGTAAGACCTGTCTGGGACATGGCATCAACTTTGAT-GTGCTAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCAACCTCGATAATGAAAGC
40844965 CAGTGTAAGACC
1 CAGTGTAAGACC
40844977 ATGTCTGAAA
Statistics
Matches: 85, Mismatches: 21, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
47 15 0.18
48 38 0.45
49 32 0.38
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (48 bp):
CAGTGTAAGACCTATCTGGGACATGGCATCAACCTCGATAATGAAAGC
Found at i:40847269 original size:29 final size:28
Alignment explanation
Indices: 40847181--40847297 Score: 128
Period size: 28 Copynumber: 4.1 Consensus size: 28
40847171 ACATACATGC
** * * *
40847181 ATATGGCCCATTTGCCCCAATCTCATTT
1 ATATGGCCCATAGGCCCAAATCACCTTT
* * * *
40847209 ATATGGCCCATCGGCCCAATTCACATTC
1 ATATGGCCCATAGGCCCAAATCACCTTT
40847237 ATATGGCCCATAAGGCCCAAATCACCTTT
1 ATATGGCCCAT-AGGCCCAAATCACCTTT
40847266 ATATGGCCCATTAGGCCCAAATCACC-TT
1 ATATGGCCCA-TAGGCCCAAATCACCTTT
40847294 ATAT
1 ATAT
40847298 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
28 39 0.51
29 37 0.48
30 1 0.01
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (28 bp):
ATATGGCCCATAGGCCCAAATCACCTTT
Found at i:40850852 original size:43 final size:43
Alignment explanation
Indices: 40850795--40850917 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 43
40850785 TCCGAGATCA
* * * **
40850795 GATTACATGCAAGACCATGTCTGGGACATTGGCAT-TTTATTGT
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATCGTTA-CAT
* *
40850838 GATTAT-GTGTAAGACCATGTCTGAGACATTGGCATCGTTACAT
1 GATT-TCATGTAAGACCATGTCTGGGACATTGGCATCGTTACAT
* *
40850881 GATTTCATGTAAGACCATGTATGGGACATTGGAATCG
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATCG
40850918 ATATGAGATA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 1 0.02
43 62 0.94
44 3 0.05
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (43 bp):
GATTTCATGTAAGACCATGTCTGGGACATTGGCATCGTTACAT
Found at i:40850933 original size:43 final size:43
Alignment explanation
Indices: 40850845--40850941 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 43
40850835 TGTGATTATG
* * * **
40850845 TGTAAGACCATGTCTGAGACATTGGCATCGTTACATGATTTCA
1 TGTAAGACCATGTATGAGACATTGGAATCGATACATGATAACA
* *
40850888 TGTAAGACCATGTATGGGACATTGGAATCGATATGA-GATAACA
1 TGTAAGACCATGTATGAGACATTGGAATCGATA-CATGATAACA
40850931 TGTAAGACCAT
1 TGTAAGACCAT
40850942 ATCTACGATA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTATGAGACATTGGAATCGATACATGATAACA
Found at i:40853473 original size:24 final size:25
Alignment explanation
Indices: 40853407--40853478 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
40853397 CTCTGTTAAT
* *
40853407 AACTAGGGCAAAGCCCTTTTTGATT
1 AACTGGGGCAAAGCCCTTTTTGATA
*
40853432 AACTGGGGTAAAGCCCTTTTTCG-TA
1 AACTGGGGCAAAGCCCTTTTT-GATA
*
40853457 AACTGGGGCAAAGCCTTTTTTG
1 AACTGGGGCAAAGCCCTTTTTG
40853479 CACTTCCTCC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.02
25 39 0.95
26 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:40853550 original size:21 final size:21
Alignment explanation
Indices: 40853524--40853563 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
40853514 TATAATGAAT
*
40853524 ATATCATGTGCATCTCATAAC
1 ATATCATGTGCATATCATAAC
40853545 ATATCATGTGCATATCATA
1 ATATCATGTGCATATCATA
40853564 TCATGTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (21 bp):
ATATCATGTGCATATCATAAC
Found at i:40853563 original size:16 final size:16
Alignment explanation
Indices: 40853539--40853569 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
40853529 ATGTGCATCT
40853539 CATAACATATCATGTG
1 CATAACATATCATGTG
*
40853555 CATATCATATCATGT
1 CATAACATATCATGT
40853570 ATCTCAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (16 bp):
CATAACATATCATGTG
Found at i:40861472 original size:25 final size:25
Alignment explanation
Indices: 40861444--40861516 Score: 110
Period size: 25 Copynumber: 2.9 Consensus size: 25
40861434 CCTCTTTTAA
40861444 TAACTGGGGCAAAGCCCTTTTTGAT
1 TAACTGGGGCAAAGCCCTTTTTGAT
* *
40861469 TAACTGGGGCAAAGCCCTTTTCGGT
1 TAACTGGGGCAAAGCCCTTTTTGAT
* *
40861494 AAACTAGGGCAAAGCCCTTTTTG
1 TAACTGGGGCAAAGCCCTTTTTG
40861517 CACTTCCTCT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (25 bp):
TAACTGGGGCAAAGCCCTTTTTGAT
Found at i:40861472 original size:50 final size:50
Alignment explanation
Indices: 40861418--40861516 Score: 121
Period size: 50 Copynumber: 2.0 Consensus size: 50
40861408 GCTTTATCAT
** *
40861418 TTAACTGGAGGCCTAGCCTCTTTT-AAT-AACTGGGGCAAAGCCCTTTTTGA
1 TTAACTGG-GGCAAAGCC-CTTTTCAATAAACTAGGGCAAAGCCCTTTTTGA
**
40861468 TTAACTGGGGCAAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTTG
1 TTAACTGGGGCAAAGCCCTTTTCAATAAACTAGGGCAAAGCCCTTTTTG
40861517 CACTTCCTCT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
48 5 0.12
49 8 0.19
50 29 0.69
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (50 bp):
TTAACTGGGGCAAAGCCCTTTTCAATAAACTAGGGCAAAGCCCTTTTTGA
Found at i:40863983 original size:63 final size:63
Alignment explanation
Indices: 40863904--40864030 Score: 236
Period size: 63 Copynumber: 2.0 Consensus size: 63
40863894 AATCATAAAT
* *
40863904 ACCTTAGTGATGATTGAGGACCAATTTGAAATCATTTGGAAAGTTTAGGAAATAGTCACAAAA
1 ACCTTAGTGACGATTGAGGACCAAATTGAAATCATTTGGAAAGTTTAGGAAATAGTCACAAAA
40863967 ACCTTAGTGACGATTGAGGACCAAATTGAAATCATTTGGAAAGTTTAGGAAATAGTCACAAAA
1 ACCTTAGTGACGATTGAGGACCAAATTGAAATCATTTGGAAAGTTTAGGAAATAGTCACAAAA
40864030 A
1 A
40864031 TTTGGAAACA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (63 bp):
ACCTTAGTGACGATTGAGGACCAAATTGAAATCATTTGGAAAGTTTAGGAAATAGTCACAAAA
Found at i:40876172 original size:24 final size:22
Alignment explanation
Indices: 40876131--40876175 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
40876121 CGAGTAATCA
*
40876131 CATTTCATATACATGTATCATT
1 CATTTCATATACAGGTATCATT
40876153 CATTTCATATATCAAGGTATCAT
1 CATTTCATATA-C-AGGTATCAT
40876176 GTAACATCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 11 0.55
23 1 0.05
24 8 0.40
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (22 bp):
CATTTCATATACAGGTATCATT
Found at i:40884862 original size:35 final size:35
Alignment explanation
Indices: 40884823--40884997 Score: 152
Period size: 35 Copynumber: 5.0 Consensus size: 35
40884813 GTATGTACAT
*
40884823 ATGTGATGATGTATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
40884858 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * * * *
40884893 GTGTGATGTTTTATTGTACTTGTATATTCGGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
40884928 ATATGATGGTATATTGTACTTGTATATTCGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * *
40884963 ATGTGATGATATAATGAACCATGTGTATTTGGCCA
1 ATGTGATGATATATTGAA-CTTGTATATTTGGCCA
40884998 TACAAGTAAG
Statistics
Matches: 111, Mismatches: 28, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
35 98 0.88
36 13 0.12
ACGTcount: A:0.27, C:0.10, G:0.21, T:0.42
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:40902806 original size:35 final size:35
Alignment explanation
Indices: 40902767--40902925 Score: 174
Period size: 35 Copynumber: 4.5 Consensus size: 35
40902757 GTATGTACAT
* *
40902767 ATGTGATGATGTATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTCGGCCAC
* * * * *
40902802 ATGTGATGTTATATTAAACTTGAATATTCGACTAC
1 ATGTGATGATATATTGAACTTGTATATTCGGCCAC
* * * * *
40902837 ATGTGATGTTTTATTGAACTTGTATATTTGGTCAT
1 ATGTGATGATATATTGAACTTGTATATTCGGCCAC
* * *
40902872 ATATGATGATATATTGTACTTGTATATTCGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTCGGCCAC
*
40902907 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
40902926 CATGTGTATT
Statistics
Matches: 100, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 100 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTCGGCCAC
Found at i:40902852 original size:70 final size:70
Alignment explanation
Indices: 40902767--40902925 Score: 192
Period size: 70 Copynumber: 2.3 Consensus size: 70
40902757 GTATGTACAT
* *
40902767 ATGTGATGATGTATTGAACTTGTATATTTGGCCACATGTGATGTTATATTAAACTTGAATATTCG
1 ATGTGATGATGTATTGAACTTGTATATTTGGCCACATATGATGATATATTAAACTTGAATATTCG
40902832 ACTAC
66 ACTAC
* * * * ** *
40902837 ATGTGATGTTTTATTGAACTTGTATATTTGGTCATATATGATGATATATTGTACTTGTATATTCG
1 ATGTGATGATGTATTGAACTTGTATATTTGGCCACATATGATGATATATTAAACTTGAATATTCG
* * *
40902902 GCCAT
66 ACTAC
* *
40902907 ATGTGATGATATAATGAAC
1 ATGTGATGATGTATTGAAC
40902926 CATGTGTATT
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
70 74 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (70 bp):
ATGTGATGATGTATTGAACTTGTATATTTGGCCACATATGATGATATATTAAACTTGAATATTCG
ACTAC
Found at i:40906840 original size:68 final size:67
Alignment explanation
Indices: 40906768--40906947 Score: 181
Period size: 68 Copynumber: 2.6 Consensus size: 67
40906758 CATCATGTGT
* * *
40906768 ACAAGAGAGCTACGAGATACTATGTAGTAGCTAGGTCACATGTGTGA-T-ACGGGATGTATC-CC
1 ACAAGAGAGCTACGAGATA-TAT-T-GTAGCTAGGTCACATGTGTGATTCAAGGGAAGGA-CACC
40906830 ATGTAG
62 ATGTAG
* * * *
40906836 ACAAGAGAGCTACGGGAGAGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGATAT-ATTGTAGCTAGGTCACATGTGTGATT-CAAGGGAAGGACACC
40906901 ATGTAG
62 ATGTAG
*
40906907 ACAAGAGAGCTACGAGATAAATTG--GCTAGGTCACATGTGTG
1 ACAAGAGAGCTACGAGATATATTGTAGCTAGGTCACATGTGTG
40906948 GTACTAAGTG
Statistics
Matches: 94, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
66 16 0.17
68 36 0.38
69 8 0.09
70 7 0.07
71 27 0.29
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGATATATTGTAGCTAGGTCACATGTGTGATTCAAGGGAAGGACACCATGT
AG
Found at i:40923955 original size:45 final size:45
Alignment explanation
Indices: 40923891--40923977 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
40923881 TATGTGCTCT
*
40923891 GAACTCATTGATTTGTGGTCTGAGTTCATGATATACGTGACATTC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATACGTGACATTC
* *
40923936 GAACTCATTGAGTTGTGGTCTGAGTTCGTGATATATGTGACA
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATACGTGACA
40923978 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTCATGATATACGTGACATTC
Found at i:40928402 original size:43 final size:43
Alignment explanation
Indices: 40928346--40928460 Score: 128
Period size: 42 Copynumber: 2.7 Consensus size: 43
40928336 ATATCGTACA
* * *
40928346 ATGCCAATGTCCCAGACTTGGTCTTACAT-GTAATCACATATCG
1 ATGCCACTGTCCCAGACTTGGTCTTAC-TCATAAACACATATCG
* * *
40928389 ATGCCACTATCCCAGA-TAGGGCTTACTCATAAACACATATCG
1 ATGCCACTGTCCCAGACTTGGTCTTACTCATAAACACATATCG
*
40928431 ATGCCAAC-GTCCCAGACGTGGTCTTACTCA
1 ATGCC-ACTGTCCCAGACTTGGTCTTACTCA
40928461 CACACATATA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.02
42 32 0.54
43 26 0.44
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACTTGGTCTTACTCATAAACACATATCG
Found at i:40933805 original size:15 final size:15
Alignment explanation
Indices: 40933787--40933819 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
40933777 TATGTAATAG
40933787 ATTAACATGTTTTGT
1 ATTAACATGTTTTGT
40933802 ATTAACATGTTTTGT
1 ATTAACATGTTTTGT
40933817 ATT
1 ATT
40933820 GGAATTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.06, G:0.12, T:0.55
Consensus pattern (15 bp):
ATTAACATGTTTTGT
Found at i:40934432 original size:45 final size:45
Alignment explanation
Indices: 40934371--40934507 Score: 202
Period size: 45 Copynumber: 3.0 Consensus size: 45
40934361 TAGGATTCTG
* *
40934371 ATATGTGTTTTTGTGTAAGACGACGTCTGGGACATTGGCATCGAT
1 ATATGTGTTTTTGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * *
40934416 ATATGTGTTTTTGTGTAAGACCACATCTAGGATGTTGGCATCAAT
1 ATATGTGTTTTTGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* *
40934461 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTTGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
40934506 AT
1 AT
40934508 GCGGTTACAA
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 80 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.36
Consensus pattern (45 bp):
ATATGTGTTTTTGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:40935739 original size:16 final size:16
Alignment explanation
Indices: 40935720--40935750 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
40935710 CTTCTTCACT
40935720 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
40935736 TACTTACTTACTTAA
1 TACTCACTTACTTAA
40935751 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:40935756 original size:20 final size:20
Alignment explanation
Indices: 40935717--40935756 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
40935707 AAACTTCTTC
* *
40935717 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
40935737 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
40935757 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:40936021 original size:49 final size:51
Alignment explanation
Indices: 40935944--40936195 Score: 179
Period size: 53 Copynumber: 4.8 Consensus size: 51
40935934 GTGGGTACCC
* ** * **
40935944 TACCATTTCCATGACTTTTCATGCTCTTATGTGGTATCCTT-TTA-AAACT
1 TACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTCTTATAAACT
* *
40935993 TACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACT
1 TACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTT--CTTATAAACT
* * * * *
40936046 CACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACT
1 TACCATTGCCATGACTTGACATGGTCTTACATGGTATCC-TT--CTTATA--AACT
* * * * *
40936101 TATCAATT-CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCT
1 TA-CCATTGCCATGACTTGACATGGTCTTACATGGTATCCTT--CTTATAAA-CT
* * * *
40936155 TACAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 TACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTT
40936196 AAACCCTAAT
Statistics
Matches: 165, Mismatches: 27, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
49 34 0.21
52 5 0.03
53 51 0.31
54 33 0.20
55 37 0.22
56 5 0.03
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (51 bp):
TACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTCTTATAAACT
Found at i:40936070 original size:53 final size:54
Alignment explanation
Indices: 40935988--40936195 Score: 235
Period size: 53 Copynumber: 3.9 Consensus size: 54
40935978 TATCCTTTTA
* *
40935988 AAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * *
40936042 -AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G
* * * * * *
40936096 TAACTTATCAATTCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-G
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* *
40936149 AAACCTTA-CAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
40936196 AAACCCTAAT
Statistics
Matches: 130, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
52 2 0.02
53 50 0.38
54 36 0.28
55 40 0.31
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (54 bp):
AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:40936568 original size:30 final size:30
Alignment explanation
Indices: 40936534--40936592 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
40936524 TCCTTGACCC
40936534 AAACTTTGACAAAATTACA-TTTTTGCCCCT
1 AAACTTTGACAAAATTACACTTTTT-CCCCT
* * *
40936564 AAACTTTTACATATTTACACTTTTTCCCC
1 AAACTTTGACAAAATTACACTTTTTCCCC
40936593 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.41
Consensus pattern (30 bp):
AAACTTTGACAAAATTACACTTTTTCCCCT
Found at i:40936925 original size:18 final size:18
Alignment explanation
Indices: 40936902--40936944 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
40936892 TTGGGACTCC
40936902 AAAAACGTAAAGAACATT
1 AAAAACGTAAAGAACATT
*
40936920 AAAAACATAAAGAACATT
1 AAAAACGTAAAGAACATT
40936938 AAAAACG
1 AAAAACG
40936945 GGGCTTGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.65, C:0.12, G:0.09, T:0.14
Consensus pattern (18 bp):
AAAAACGTAAAGAACATT
Found at i:40936940 original size:10 final size:10
Alignment explanation
Indices: 40936909--40936940 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
40936899 TCCAAAAACG
40936909 TAAAGAACAT
1 TAAAGAACAT
40936919 TAAA-AACA-
1 TAAAGAACAT
40936927 TAAAGAACAT
1 TAAAGAACAT
40936937 TAAA
1 TAAA
40936941 AACGGGGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 4 0.20
9 8 0.40
10 8 0.40
ACGTcount: A:0.66, C:0.09, G:0.06, T:0.19
Consensus pattern (10 bp):
TAAAGAACAT
Found at i:40939332 original size:26 final size:26
Alignment explanation
Indices: 40939302--40939354 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
40939292 TTCTAGAGAG
40939302 TATGATACCGAGATATACCTATTAGA
1 TATGATACCGAGATATACCTATTAGA
*
40939328 TATGATACTGAGATATACCTATTAGA
1 TATGATACCGAGATATACCTATTAGA
40939354 T
1 T
40939355 TTGTTCTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (26 bp):
TATGATACCGAGATATACCTATTAGA
Found at i:40948331 original size:33 final size:35
Alignment explanation
Indices: 40948259--40948336 Score: 110
Period size: 34 Copynumber: 2.3 Consensus size: 35
40948249 TCAGAGGCAA
*
40948259 TATCA-ATGTGGGCCTTAGCCCATTACAGTAACAG
1 TATCAGATATGGGCCTTAGCCCATTACAGTAACAG
40948293 TATCAG-TATGGGCCTTAGCCCAATT-CAGT-ACAG
1 TATCAGATATGGGCCTTAGCCC-ATTACAGTAACAG
40948326 TATCAGATATG
1 TATCAGATATG
40948337 CAAAAAGAGA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
33 10 0.25
34 27 0.68
35 3 0.08
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (35 bp):
TATCAGATATGGGCCTTAGCCCATTACAGTAACAG
Found at i:40961388 original size:53 final size:54
Alignment explanation
Indices: 40961210--40961402 Score: 201
Period size: 55 Copynumber: 3.6 Consensus size: 54
40961200 GGGTTTAAGC
* *
40961210 ATACCAAGTAAGACCATGCCAA-AGCATGGCATTGGTAAGTTCTACAAGGCAAGG
1 ATACCATGTAAGACCATGCCAAGA-CATGGCATTGGTAAGTTCTATAAGGCAAGG
* * ** * * * *
40961264 AAATCATGTAAGACCATGTTAAGACATGGCATTGATAAACTACTATAAGGCAAAG
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGT-AAGTTCTATAAGGCAAGG
* * * * *
40961319 ATCCCATGTAAGACCATGCCAAGGCATGGTAATGGTGAGTTC-ATAAGGCAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGG
* *
40961372 ATACCACGTAAGACCATGTCAAGACATGGCA
1 ATACCATGTAAGACCATGCCAAGACATGGCA
40961403 ACAGTAAGTT
Statistics
Matches: 109, Mismatches: 28, Indels: 5
0.77 0.20 0.04
Matches are distributed among these distances:
53 36 0.33
54 31 0.28
55 42 0.39
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (54 bp):
ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGG
Found at i:40966892 original size:28 final size:28
Alignment explanation
Indices: 40966860--40966922 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
40966850 GTGCATGCAA
* *
40966860 TAACAGTCTGGACCTTAGCCCTATATAG
1 TAACAGTCTGGACCTAAGCCCAATATAG
* *
40966888 TAACAGTGTGGGCCTAAGCCCAATATAG
1 TAACAGTCTGGACCTAAGCCCAATATAG
40966916 TAACAGT
1 TAACAGT
40966923 ACAGTGTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (28 bp):
TAACAGTCTGGACCTAAGCCCAATATAG
Found at i:40967110 original size:27 final size:26
Alignment explanation
Indices: 40967080--40967164 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 26
40967070 CTGTCAGAAA
*
40967080 CAGTAAGTGTGACAAAGTCACCAGTAT
1 CAGTAA-TGTGACATAGTCACCAGTAT
* *
40967107 CAGTAATTGTGGCATAGCCACCAGTAAT
1 CAGTAA-TGTGACATAGTCACCAGT-AT
*
40967135 -AGTGAATGTGACATAGTCACCAATA-
1 CAGT-AATGTGACATAGTCACCAGTAT
40967160 CAGTA
1 CAGTA
40967165 CTTCCTCCAT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
25 1 0.02
26 4 0.08
27 39 0.81
28 4 0.08
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (26 bp):
CAGTAATGTGACATAGTCACCAGTAT
Found at i:40967526 original size:27 final size:26
Alignment explanation
Indices: 40967331--40967513 Score: 267
Period size: 27 Copynumber: 6.8 Consensus size: 26
40967321 TATCACGGTT
* *
40967331 ATTTTACCCTACAGGGCCATTACGGTC
1 ATTTTACCCTACAGGG-TATTACGATC
*
40967358 ATTTTACCCTACAGGGATATTACGCTC
1 ATTTTACCCTACAGGG-TATTACGATC
40967385 ATTTTACCCTACATGGGTATTACGATC
1 ATTTTACCCTACA-GGGTATTACGATC
*
40967412 ATTTTATCCTACAGGGGTATTACGATC
1 ATTTTACCCTACA-GGGTATTACGATC
40967439 ATTTTACCCTACAGAGGTATTACGATC
1 ATTTTACCCTACAG-GGTATTACGATC
*
40967466 ATTTTACCCTACAGGGTATTACGGTC
1 ATTTTACCCTACAGGGTATTACGATC
40967492 ATTTTACCCTACAGGGTCATTA
1 ATTTTACCCTACAGGGT-ATTA
40967514 TAGTTATTTT
Statistics
Matches: 145, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
26 29 0.20
27 113 0.78
28 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.34
Consensus pattern (26 bp):
ATTTTACCCTACAGGGTATTACGATC
Found at i:40978516 original size:46 final size:46
Alignment explanation
Indices: 40978464--40978639 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
40978454 TGGTTGAGCA
40978464 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
40978510 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
40978555 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
40978603 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
40978640 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:40978620 original size:93 final size:93
Alignment explanation
Indices: 40978461--40978632 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
40978451 GGATGGTTGA
* **
40978461 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
40978526 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
40978554 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
40978619 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
40978633 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:40979951 original size:102 final size:104
Alignment explanation
Indices: 40979759--40980125 Score: 618
Period size: 102 Copynumber: 3.6 Consensus size: 104
40979749 TTGTATATAA
** *
40979759 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
40979823 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
40979863 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCT-AGTGCG-TATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
40979926 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
40979965 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
40980030 TGAAA--TGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
40980067 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
40980126 ATAACGGTTA
Statistics
Matches: 253, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
102 182 0.72
103 12 0.05
104 59 0.23
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:40987123 original size:104 final size:105
Alignment explanation
Indices: 40986877--40987144 Score: 432
Period size: 104 Copynumber: 2.6 Consensus size: 105
40986867 TTGTATATAA
** *
40986877 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
40986941 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCTCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
40986982 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
40987047 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* ** *
40987086 AGGGGTTGCTAAGTGCTGATTCCTCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
40987145 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
104 83 0.55
105 68 0.45
106 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.31
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:40995041 original size:45 final size:45
Alignment explanation
Indices: 40994881--40995052 Score: 192
Period size: 45 Copynumber: 3.8 Consensus size: 45
40994871 GGTTGAGCAT
*
40994881 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
* * * *
40994926 TC-AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC---GC
40994970 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
* *
40995017 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
40995053 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
40 2 0.02
41 4 0.04
43 3 0.03
44 25 0.24
45 35 0.33
46 1 0.01
47 27 0.25
48 2 0.02
50 7 0.07
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:41003254 original size:38 final size:38
Alignment explanation
Indices: 41003167--41003293 Score: 168
Period size: 37 Copynumber: 3.4 Consensus size: 38
41003157 GCGTGATATT
* *
41003167 TGGAACATATCCGGACTTGAGGTCTGCAGGC-ACGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
* *
41003204 TGGAACATATCCGGACTTGAGGTCCGCAAGCTATGTAC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
* *
41003242 TGGAATATATCCGGACTTGAGGT-CGTAGGCTATGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
*
41003279 TGGAAATATATCCGG
1 TGG-AACATATCCGG
41003294 GCCTAAAGTT
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
37 43 0.54
38 37 0.46
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (38 bp):
TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
Found at i:41010863 original size:38 final size:38
Alignment explanation
Indices: 41010807--41010929 Score: 194
Period size: 38 Copynumber: 3.3 Consensus size: 38
41010797 GCGTGGTATT
*
41010807 TGGAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
*
41010845 TGGAACATATCCGAACTTGAGGTCCGCAGGCTATGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
* * *
41010883 TGGAATATATCTGGACTTGAGGTCTGCAGGCTATGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
41010921 TGGAA-ATAT
1 TGGAACATAT
41010930 ATCCAGGCCT
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
37 4 0.05
38 75 0.95
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (38 bp):
TGGAACATATCCGGACTTGAGGTCCGCAGGCTATGTGC
Found at i:41014764 original size:47 final size:47
Alignment explanation
Indices: 41014698--41014938 Score: 365
Period size: 47 Copynumber: 5.1 Consensus size: 47
41014688 GAAATGATAG
*
41014698 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
41014745 TAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
41014794 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
41014841 TAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * *
41014888 CAAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
41014935 TAAG
1 TAAG
41014939 TCCGAAGGGC
Statistics
Matches: 177, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 133 0.75
49 44 0.25
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:41014865 original size:96 final size:94
Alignment explanation
Indices: 41014699--41014938 Score: 381
Period size: 96 Copynumber: 2.5 Consensus size: 94
41014689 AAATGATAGT
*
41014699 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGTCGATG
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATG
*
41014764 TGATGAATGTGAAAGTGTATATATATGTGAT
66 TGATGAATGTGAAAGTG--TATATATGTGAC
*
41014795 AGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATG
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATG
41014860 TGATGAATGTGAAAGTGTATATATGTGAC
66 TGATGAATGTGAAAGTGTATATATGTGAC
* * * * * *
41014889 AAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
41014939 TCCGAAGGGC
Statistics
Matches: 134, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
94 54 0.40
96 80 0.60
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (94 bp):
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATG
TGATGAATGTGAAAGTGTATATATGTGAC
Found at i:41015112 original size:37 final size:37
Alignment explanation
Indices: 41015056--41015134 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
41015046 CCGAGCTCTA
* * *
41015056 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
41015093 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
41015130 AAGAC
1 AAGAC
41015135 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:41016554 original size:40 final size:39
Alignment explanation
Indices: 41016509--41016613 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
41016499 TTTTATCCAT
* *
41016509 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGA-TACTAA
1 ATCCGGGCTAAG-TCCGAAGGCATTGGTGCGA-ATTACTAA
* *
41016549 TTCCGGGCTAAGCCCGAAGGCATTGGTGCGAATTACTAA
1 ATCCGGGCTAAGTCCGAAGGCATTGGTGCGAATTACTAA
*
41016588 ATCTGGGCTAAGTCCCGAAGAGCATT
1 ATCCGGGCTAAGT-CCGAAG-GCATT
41016614 CATGCTAGTG
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
38 1 0.02
39 33 0.60
40 16 0.29
41 5 0.09
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.23
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGGCATTGGTGCGAATTACTAA
Found at i:41016571 original size:39 final size:40
Alignment explanation
Indices: 41016509--41016653 Score: 127
Period size: 40 Copynumber: 3.6 Consensus size: 40
41016499 TTTTATCCAT
* *
41016509 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTGGTGCGA-ATTACTAA
*
41016549 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAATTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAATTACTAA
* ** * * * **
41016588 ATCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGT
1 ATCCGGGCTAAGTCCCGAAG-GCATTGGTGCGAATTACTAA
41016628 ATCCGGGCTAAGTCCCGAAGAGCATT
1 ATCCGGGCTAAGTCCCGAAG-GCATT
41016654 CATGCTAGTG
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 33 0.38
40 43 0.49
41 11 0.12
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAATTACTAA
Found at i:41016636 original size:40 final size:40
Alignment explanation
Indices: 41016592--41016744 Score: 234
Period size: 40 Copynumber: 3.8 Consensus size: 40
41016582 TACTAAATCT
41016592 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
41016632 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
* * * * *
41016672 GGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTATATCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
* * *
41016712 GGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
41016745 CGTGTATTCG
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
Found at i:41016961 original size:25 final size:25
Alignment explanation
Indices: 41016907--41016961 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
41016897 TGTGTATTAA
41016907 CGAATGAATAAGAGCACTATGTATG
1 CGAATGAATAAGAGCACTATGTATG
* * * *
41016932 TGAATG-ATTAGAGGCACTGTGTGTG
1 CGAATGAATAAGA-GCACTATGTATG
41016957 CGAAT
1 CGAAT
41016962 TCCTTTAACC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (25 bp):
CGAATGAATAAGAGCACTATGTATG
Found at i:41020426 original size:47 final size:47
Alignment explanation
Indices: 41020318--41020559 Score: 367
Period size: 47 Copynumber: 5.1 Consensus size: 47
41020308 TGAAATGATA
41020318 GTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 GTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
41020365 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTG
1 -G-TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
41020414 GTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 GTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
41020461 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 GTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
** * * * * * *
41020508 ACAAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTG
1 GTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
41020555 ATAAG
1 GTAAG
41020560 TCCCGAAGGG
Statistics
Matches: 182, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
47 135 0.74
48 2 0.01
49 45 0.25
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
GTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
Found at i:41020734 original size:37 final size:37
Alignment explanation
Indices: 41020678--41020756 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
41020668 CCGAGCTCTA
* * *
41020678 AAGACCCGATGACTACGTGTGGGGATTTTGCCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
* *
41020715 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
41020752 AAGAC
1 AAGAC
41020757 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
Found at i:41028799 original size:30 final size:30
Alignment explanation
Indices: 41028763--41028824 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
41028753 AGTGTGCGAG
*
41028763 TATAAATGATTACGGATGTGAATCTTGCAC
1 TATAAATGATTACGGATCTGAATCTTGCAC
41028793 TATAAATGATTACGGATCTGAATCTTGCAC
1 TATAAATGATTACGGATCTGAATCTTGCAC
41028823 TA
1 TA
41028825 AGTATGCGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.34
Consensus pattern (30 bp):
TATAAATGATTACGGATCTGAATCTTGCAC
Found at i:41042216 original size:39 final size:40
Alignment explanation
Indices: 41042173--41042306 Score: 123
Period size: 39 Copynumber: 3.5 Consensus size: 40
41042163 ACCAGCTCGA
* * * *
41042173 AGCCTGCGGGA-CTTTAGCCCGGACATATTTCTAGCACGT
1 AGCCTGCGGGACCTTAAGCCCGAACATAATTCTAGCACAT
* * *
41042212 AGCCTGC-AGACCTTAAGTCCGAATATAATTCTAGCACAT
1 AGCCTGCGGGACCTTAAGCCCGAACATAATTCTAGCACAT
* * * * *
41042251 AGCCTGC-GGACCCTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGGACCTTAAGCCCGAACATAATTCTAGCACAT
*
41042290 AGCCTGC-GGACCCTAAG
1 AGCCTGCGGGACCTTAAG
41042307 TCCGGATATA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
38 2 0.02
39 81 0.98
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCCTGCGGGACCTTAAGCCCGAACATAATTCTAGCACAT
Found at i:41042307 original size:39 final size:39
Alignment explanation
Indices: 41042191--41042316 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
41042181 GGACTTTAGC
* * * * *
41042191 CCGGACATATTTCTAGCACGTAGCCTGCAGACCTTAAGT
1 CCGGATATAATTCTAGCACATAGCCTGCGGACCCTAAGT
*
41042230 CCGAATATAATTCTAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCTAGCACATAGCCTGCGGACCCTAAGT
*
41042269 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCTAGCACATAGCCTGCGGACCCTAAGT
41042308 CCGGATATA
1 CCGGATATA
41042317 CATCACTGAA
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCTAGCACATAGCCTGCGGACCCTAAGT
Found at i:41057492 original size:79 final size:79
Alignment explanation
Indices: 41057325--41057508 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 79
41057315 GCTACTCATT
*
41057325 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
41057389 ATTTAGTAACTCGCA
65 ATATAGTAACTAGCA
* * *
41057404 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACC
* * *
41057467 GGATATGGTCACTAGCA
63 CGATATAGTAACTAGCA
41057484 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
41057509 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 6 0.07
79 61 0.68
80 23 0.26
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
TATAGTAACTAGCA
Found at i:41057508 original size:39 final size:40
Alignment explanation
Indices: 41057325--41057508 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 40
41057315 GCTACTCATT
* *
41057325 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
41057365 CAAATGCCTTCGGGACTTAACCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
41057404 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCA
* * * *
41057444 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCA
41057484 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
41057509 CATCATTCAA
Statistics
Matches: 128, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
38 3 0.02
39 47 0.37
40 78 0.61
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:41065463 original size:78 final size:81
Alignment explanation
Indices: 41065333--41065516 Score: 252
Period size: 78 Copynumber: 2.3 Consensus size: 81
41065323 GCTACTCGTT
* *
41065333 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
41065397 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
**
41065413 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
41065476 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
41065492 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
41065517 CATCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
77 3 0.03
78 47 0.51
79 29 0.31
80 14 0.15
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:41065516 original size:40 final size:40
Alignment explanation
Indices: 41065314--41065516 Score: 254
Period size: 40 Copynumber: 5.1 Consensus size: 40
41065304 CGGAATTTAA
** *
41065314 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
41065354 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
41065394 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
41065433 CCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
41065472 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
41065512 CCGGA
1 CCGGA
41065517 CATCATTCAA
Statistics
Matches: 144, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
37 2 0.01
38 23 0.16
39 23 0.16
40 85 0.59
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:41068796 original size:58 final size:57
Alignment explanation
Indices: 41068706--41068852 Score: 156
Period size: 57 Copynumber: 2.6 Consensus size: 57
41068696 CATTAACCTT
* * *
41068706 GTTATAGAAAGGATTTAGCCCGGA-TGGATAATCCTGATAC-AACACCTCTTGAGCATAC
1 GTTATATAAAGGATTTAGCCTGGACTGG-TAATCCTAAT-CGAACACCTC-TGAGCATAC
* * * *
41068764 GTTATGAT-TAGGATTTAGCCTGGACTGGTAATCCTAATCGAGCCCCTCTGAGCATAT
1 GTTAT-ATAAAGGATTTAGCCTGGACTGGTAATCCTAATCGAACACCTCTGAGCATAC
* *
41068821 GTTATATAAAGGACTTAGTCTGGACTGGTAAT
1 GTTATATAAAGGATTTAGCCTGGACTGGTAAT
41068853 TCTGTTATAC
Statistics
Matches: 75, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
56 2 0.03
57 35 0.47
58 34 0.45
59 4 0.05
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (57 bp):
GTTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATCGAACACCTCTGAGCATAC
Found at i:41070936 original size:29 final size:29
Alignment explanation
Indices: 41070876--41070949 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
41070866 TAATCAACCG
* *
41070876 CGCACACTTAGTTCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
**
41070905 CGCACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
*
41070934 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
41070950 ATCTCACAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 3 0.08
29 36 0.92
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:41083659 original size:15 final size:16
Alignment explanation
Indices: 41083639--41083668 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
41083629 CGGTGCCTTG
41083639 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
41083654 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
41083669 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:41094373 original size:19 final size:19
Alignment explanation
Indices: 41094349--41094389 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
41094339 CTTTTTAATA
*
41094349 AAAGGATTTATAATGAATC
1 AAAGGATTTAGAATGAATC
41094368 AAAGGATTTAGAATGAATC
1 AAAGGATTTAGAATGAATC
41094387 AAA
1 AAA
41094390 TGTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.51, C:0.05, G:0.17, T:0.27
Consensus pattern (19 bp):
AAAGGATTTAGAATGAATC
Found at i:41096500 original size:13 final size:13
Alignment explanation
Indices: 41096482--41096511 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
41096472 CAGTATCTAC
41096482 TTTAGGTTACTCA
1 TTTAGGTTACTCA
41096495 TTTAGGTTACTCA
1 TTTAGGTTACTCA
41096508 TTTA
1 TTTA
41096512 TATAATACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.13, G:0.13, T:0.50
Consensus pattern (13 bp):
TTTAGGTTACTCA
Found at i:41096932 original size:24 final size:24
Alignment explanation
Indices: 41096887--41096979 Score: 59
Period size: 24 Copynumber: 3.8 Consensus size: 24
41096877 AAAATTTTAA
* *
41096887 AAATAATTAAATCA-AATAATACTT
1 AAATAATTTAAT-ATAATTATACTT
*
41096911 AAATAATTTAATATAATTATACATA
1 AAATAATTTAATATAATTATAC-TT
* *
41096936 AAATATATTTTAATTTTAAATATA-TT
1 AAATA-A-TTTAA-TATAATTATACTT
*
41096962 TAATAA-TTAATAT-ATTAT
1 AAATAATTTAATATAATTAT
41096980 TTATAAATTT
Statistics
Matches: 55, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
21 4 0.07
22 2 0.04
23 5 0.09
24 18 0.33
25 7 0.13
26 6 0.11
27 5 0.09
28 8 0.15
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (24 bp):
AAATAATTTAATATAATTATACTT
Found at i:41096971 original size:17 final size:17
Alignment explanation
Indices: 41096912--41096977 Score: 57
Period size: 17 Copynumber: 3.9 Consensus size: 17
41096902 ATAATACTTA
* *
41096912 AATAATTTAATATAATT
1 AATAATTAAATATATTT
*
41096929 -ATACATAAAATATATTTT
1 AATA-ATTAAATATA-TTT
*
41096947 AAT-TTTAAATATATTT
1 AATAATTAAATATATTT
41096963 AATAATT-AATATATT
1 AATAATTAAATATATT
41096978 ATTTATAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
16 17 0.44
17 18 0.46
18 2 0.05
19 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
AATAATTAAATATATTT
Found at i:41099116 original size:26 final size:26
Alignment explanation
Indices: 41099087--41099149 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
41099077 TTTATCGAGG
* *
41099087 TTATTAGTTTAT-GATAAATGAATTTT
1 TTATTAATTTATCGATAAATGAA-TAT
*
41099113 TTATTAATTTATCGATAAATTAATAT
1 TTATTAATTTATCGATAAATGAATAT
41099139 TTATTAATTTA
1 TTATTAATTTA
41099150 GAGAATATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 24 0.73
27 9 0.27
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (26 bp):
TTATTAATTTATCGATAAATGAATAT
Found at i:41113794 original size:93 final size:93
Alignment explanation
Indices: 41113682--41113853 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
41113672 CGCCCATAAG
*
41113682 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
41113746 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
41113775 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
41113840 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
41113854 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:41113848 original size:46 final size:46
Alignment explanation
Indices: 41113675--41113850 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
41113665 TGTAACCCGC
* *
41113675 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
41113721 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
41113771 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
41113814 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
41113851 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:41121368 original size:93 final size:93
Alignment explanation
Indices: 41121256--41121427 Score: 294
Period size: 93 Copynumber: 1.8 Consensus size: 93
41121246 CGCCCATAAG
*
41121256 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCAGG-CTCAACT
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTC-GGACTCAACT
41121319 CAACGAGTTCGGATGCCTAGTTACATCTCA
64 CAACGAGTTCGGATGCCTAGTTACATCTCA
*
41121349 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
41121414 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
41121428 TCAATCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
92 4 0.05
93 71 0.95
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:41121422 original size:46 final size:46
Alignment explanation
Indices: 41121249--41121424 Score: 193
Period size: 46 Copynumber: 3.8 Consensus size: 46
41121239 TGTAACCCGC
* *
41121249 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
41121295 CCATAAGTGAACTCAGG-CTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTC-GGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
41121345 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
41121388 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
41121425 TGCTCAATCA
Statistics
Matches: 109, Mismatches: 9, Indels: 24
0.77 0.06 0.17
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:41125234 original size:22 final size:22
Alignment explanation
Indices: 41125206--41125250 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
41125196 GGTTCCCACG
*
41125206 TAGCCTCTTCCACTCCATGTCT
1 TAGCCTCTTCAACTCCATGTCT
41125228 TAGCCTCTTCAACTCCATGTCT
1 TAGCCTCTTCAACTCCATGTCT
41125250 T
1 T
41125251 TGCCATAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.16, C:0.38, G:0.09, T:0.38
Consensus pattern (22 bp):
TAGCCTCTTCAACTCCATGTCT
Found at i:41132889 original size:27 final size:27
Alignment explanation
Indices: 41132858--41132909 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
41132848 CTGAGTTGAC
*
41132858 CTAT-ATAAATATATTTCAATAAAACCA
1 CTATAATAAA-ATATTGCAATAAAACCA
*
41132885 CTATAATAAAATATTGCAATTAAAC
1 CTATAATAAAATATTGCAATAAAAC
41132910 TATCGAATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.33
Consensus pattern (27 bp):
CTATAATAAAATATTGCAATAAAACCA
Found at i:41137463 original size:28 final size:27
Alignment explanation
Indices: 41137422--41137481 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 27
41137412 ACTGTATTGA
* * *
41137422 TACTATATTGGGCTTAGGCCCACACTG
1 TACTGTATAGGGCTAAGGCCCACACTG
*
41137449 TTACTGTATAGGGCTAAGGCCCAGACTG
1 -TACTGTATAGGGCTAAGGCCCACACTG
41137477 TACTG
1 TACTG
41137482 ATAATGTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 5 0.18
28 23 0.82
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.28
Consensus pattern (27 bp):
TACTGTATAGGGCTAAGGCCCACACTG
Found at i:41138238 original size:20 final size:20
Alignment explanation
Indices: 41138200--41138239 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
41138190 TTGCGAAAGC
*
41138200 CTTGTGATTATTGATATATA
1 CTTGTGATTATTGAAATATA
41138220 CTTGTGATGTA-TGAAATATA
1 CTTGTGAT-TATTGAAATATA
41138240 TGGTAAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45
Consensus pattern (20 bp):
CTTGTGATTATTGAAATATA
Found at i:41143268 original size:12 final size:12
Alignment explanation
Indices: 41143251--41143277 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
41143241 TCACATGCCT
41143251 GTGTGCTAGGCC
1 GTGTGCTAGGCC
41143263 GTGTGCTAGGCC
1 GTGTGCTAGGCC
41143275 GTG
1 GTG
41143278 CCAAAAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.22, G:0.44, T:0.26
Consensus pattern (12 bp):
GTGTGCTAGGCC
Found at i:41150290 original size:20 final size:21
Alignment explanation
Indices: 41150245--41150291 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
41150235 GTTTTCATCG
*
41150245 AAAACCCTACTTAAAATAAAA
1 AAAACCCTAATTAAAATAAAA
* *
41150266 GAAACCCTAATT-AACTAAAA
1 AAAACCCTAATTAAAATAAAA
41150286 AAAACC
1 AAAACC
41150292 TTTCAGTTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.60, C:0.21, G:0.02, T:0.17
Consensus pattern (21 bp):
AAAACCCTAATTAAAATAAAA
Found at i:41151361 original size:29 final size:29
Alignment explanation
Indices: 41151313--41151427 Score: 101
Period size: 29 Copynumber: 4.0 Consensus size: 29
41151303 TACCTGTATC
* *
41151313 TGGCCCATTAAG-CCTAATCATATTCATA
1 TGGCCCATTAGGCCCAAATCATATTCATA
* * *
41151341 TGACCCAATAGGCCCAAATCATCTAT-ATA
1 TGGCCCATTAGGCCCAAATCATAT-TCATA
* * *
41151370 TGGTCCATTAGGCCCAAATCAAATTTATA
1 TGGCCCATTAGGCCCAAATCATATTCATA
* * *
41151399 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCATATTCATA
41151427 T
1 T
41151428 TCATCCTCAC
Statistics
Matches: 69, Mismatches: 15, Indels: 6
0.77 0.17 0.07
Matches are distributed among these distances:
28 21 0.30
29 47 0.68
30 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCATATTCATA
Found at i:41151508 original size:17 final size:18
Alignment explanation
Indices: 41151486--41151531 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
41151476 TGCGTATTAT
41151486 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
41151503 GGGCCCATTTAGCCCATTC
1 GGGCCCATATAGCCCA-TC
*
41151522 TGGCCCATAT
1 GGGCCCATAT
41151532 GGCCAAATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 7 0.29
18 7 0.29
19 10 0.42
ACGTcount: A:0.20, C:0.37, G:0.22, T:0.22
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:41152920 original size:16 final size:16
Alignment explanation
Indices: 41152896--41152926 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
41152886 ACAAAAAAAG
*
41152896 TTTGGGATTTTTGGGT
1 TTTGAGATTTTTGGGT
41152912 TTTGAGATTTTTGGG
1 TTTGAGATTTTTGGG
41152927 GCGTTACATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.00, G:0.35, T:0.55
Consensus pattern (16 bp):
TTTGAGATTTTTGGGT
Found at i:41157881 original size:46 final size:46
Alignment explanation
Indices: 41157814--41157939 Score: 189
Period size: 46 Copynumber: 2.7 Consensus size: 46
41157804 AACCCGCCCC
* * * * *
41157814 TAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCTTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
41157860 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
41157906 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
41157940 TGCTCAACCA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:41173884 original size:27 final size:27
Alignment explanation
Indices: 41173854--41173908 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
41173844 ACCCAAAAGT
*
41173854 AAACCTTATTTATGAAATTAAAAATTA
1 AAACCTTATTTATAAAATTAAAAATTA
41173881 AAACCTTATTTATAAAATTAAAAATTA
1 AAACCTTATTTATAAAATTAAAAATTA
41173908 A
1 A
41173909 CTAAGTCAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (27 bp):
AAACCTTATTTATAAAATTAAAAATTA
Found at i:41174084 original size:27 final size:28
Alignment explanation
Indices: 41174053--41174105 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
41174043 AGCACAATCT
41174053 GGGCC-TAAGCCC-TTTCAGTAATAGTTA
1 GGGCCTTAA-CCCATTTCAGTAATAGTTA
41174080 GGGCCTTAACCCATTTCAGTAATAGT
1 GGGCCTTAACCCATTTCAGTAATAGT
41174106 GGCAATTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 8 0.33
28 16 0.67
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (28 bp):
GGGCCTTAACCCATTTCAGTAATAGTTA
Found at i:41184116 original size:31 final size:30
Alignment explanation
Indices: 41184080--41184142 Score: 90
Period size: 31 Copynumber: 2.1 Consensus size: 30
41184070 GGGGGAAGCG
*
41184080 AATGTTATATTGGGTGTTAAGATAATAAAGA
1 AATGTTATATTGGATGTTAAGAT-ATAAAGA
* *
41184111 AATGTTATATTGGATGTTATGATATTAAGA
1 AATGTTATATTGGATGTTAAGATATAAAGA
41184141 AA
1 AA
41184143 AAGAAGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 8 0.28
31 21 0.72
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (30 bp):
AATGTTATATTGGATGTTAAGATATAAAGA
Found at i:41187032 original size:42 final size:43
Alignment explanation
Indices: 41186954--41187048 Score: 108
Period size: 42 Copynumber: 2.3 Consensus size: 43
41186944 TAAGATGCCA
* *
41186954 ATGCCA-AGTCCCAGATGTGGTCTTACATAAGATCTCACATCG
1 ATGCCATAGTCCCAGATATGGTCTTACAGAAGATCTCACATCG
* **
41186996 ATGCCATA-TCCCAGATATGGTCTTATACGAAG-TCTCATTTCG
1 ATGCCATAGTCCCAGATATGGTCTTACA-GAAGATCTCACATCG
41187038 ATGCCAT-GTCC
1 ATGCCATAGTCC
41187049 TAAAACATCT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
42 41 0.91
43 4 0.09
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (43 bp):
ATGCCATAGTCCCAGATATGGTCTTACAGAAGATCTCACATCG
Found at i:41187908 original size:40 final size:40
Alignment explanation
Indices: 41187853--41187945 Score: 143
Period size: 40 Copynumber: 2.3 Consensus size: 40
41187843 ATAACCGGGC
41187853 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-TCCGAGA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGAGA
* *
41187893 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGAGA
*
41187933 TATGTCCCGAAGG
1 TAAGTCCCGAAGG
41187946 TATTCGAGTG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
39 1 0.02
40 48 0.98
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGAGA
Found at i:41190507 original size:6 final size:6
Alignment explanation
Indices: 41190477--41190585 Score: 71
Period size: 6 Copynumber: 17.8 Consensus size: 6
41190467 AAGATACATT
* * * *
41190477 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
41190526 ATCAGA ATCAGA ATCAGA ATCAAA ATTAG- GTGACAGA ATTAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
*
41190575 ATCAGT ATCAG
1 ATCAGA ATCAG
41190586 GTAACAGAAT
Statistics
Matches: 78, Mismatches: 17, Indels: 16
0.70 0.15 0.14
Matches are distributed among these distances:
5 3 0.04
6 68 0.87
7 5 0.06
8 2 0.03
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:41190539 original size:37 final size:37
Alignment explanation
Indices: 41190488--41190585 Score: 133
Period size: 37 Copynumber: 2.6 Consensus size: 37
41190478 TCAGAACTAG
* *
41190488 AATCAAAATGAGAATCAGAATCAGAATCAGGTGACAA
1 AATCAGAATCAGAATCAGAATCAGAATCAGGTGACAA
* * *
41190525 AATCAGAATCAGAATCAGAATCAAAATTAGGTGACAG
1 AATCAGAATCAGAATCAGAATCAGAATCAGGTGACAA
* *
41190562 AATTAGAATCAGAATCAGTATCAG
1 AATCAGAATCAGAATCAGAATCAG
41190586 GTAACAGAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.19
Consensus pattern (37 bp):
AATCAGAATCAGAATCAGAATCAGAATCAGGTGACAA
Found at i:41190593 original size:31 final size:31
Alignment explanation
Indices: 41190528--41190595 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
41190518 GTGACAAAAT
* *
41190528 CAGAATCAGAATCAGAATCAAAATTAGGTGA
1 CAGAATCAGAATCAGAATCAAAATCAGGTAA
* **
41190559 CAGAATTAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAAAATCAGGTAA
41190590 CAGAAT
1 CAGAAT
41190596 GTGAATGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAAAATCAGGTAA
Found at i:41190860 original size:27 final size:26
Alignment explanation
Indices: 41190813--41190863 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
41190803 CGAGGCTGCT
*
41190813 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
41190839 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
41190864 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:41190945 original size:67 final size:67
Alignment explanation
Indices: 41190774--41190937 Score: 292
Period size: 67 Copynumber: 2.4 Consensus size: 67
41190764 AAATAGATAT
* * * *
41190774 ATATATGTGGCGAAGCCACCAAATTACAGCGAGGCTGCTAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCTAGATATTGCGACGAAGTCACCAGAAC
41190839 AG
66 AG
41190841 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCTAGATATTGCGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCTAGATATTGCGACGAAGTCACCAGAAC
41190906 AG
66 AG
41190908 ATATATGTGGCGAGGCCACCAGATTGCAGC
1 ATATATGTGGCGAGGCCACCAGATTGCAGC
41190938 AAAGCTGCCA
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 93 1.00
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (67 bp):
ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCTAGATATTGCGACGAAGTCACCAGAAC
AG
Done.