Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 13 of 352
Found at i:4035418 original size:18 final size:18
Alignment explanation
Indices: 4035395--4035431 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
4035385 TGAACAAATC
4035395 ATTTTATGATTTTAATTT
1 ATTTTATGATTTTAATTT
4035413 ATTTTATGATTTTAATTT
1 ATTTTATGATTTTAATTT
4035431 A
1 A
4035432 GTAGATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (18 bp):
ATTTTATGATTTTAATTT
Found at i:4043283 original size:44 final size:44
Alignment explanation
Indices: 4043213--4043323 Score: 141
Period size: 44 Copynumber: 2.5 Consensus size: 44
4043203 TCACATTTAT
* *
4043213 CACTTGTCACTTCTCACTAATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTATCACTAATCAGATAAGTGTAGCTAAAGCTAC
* * * * * *
4043257 CACTTATTACTTGTCACTGATTAGATAAGTGTAGCTGAGGCTAC
1 CACTTATCACTTATCACTAATCAGATAAGTGTAGCTAAAGCTAC
*
4043301 CACTTATCACTTATCACTTATCA
1 CACTTATCACTTATCACTAATCA
4043324 CTTGTCACTT
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
CACTTATCACTTATCACTAATCAGATAAGTGTAGCTAAAGCTAC
Found at i:4043313 original size:7 final size:7
Alignment explanation
Indices: 4043301--4043344 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
4043291 CTGAGGCTAC
4043301 CACTTAT
1 CACTTAT
4043308 CACTTAT
1 CACTTAT
4043315 CACTTAT
1 CACTTAT
*
4043322 CACTTGT
1 CACTTAT
*
4043329 CACTTGT
1 CACTTAT
*
4043336 CACTGAT
1 CACTTAT
4043343 CA
1 CA
4043345 GATAAGTGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.25, C:0.30, G:0.07, T:0.39
Consensus pattern (7 bp):
CACTTAT
Found at i:4047664 original size:17 final size:17
Alignment explanation
Indices: 4047638--4047672 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
4047628 GATATATATT
*
4047638 TAAAACTATGATTTTAA
1 TAAAAATATGATTTTAA
4047655 TAAAAATATGATTTTAA
1 TAAAAATATGATTTTAA
4047672 T
1 T
4047673 TTTTTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.43
Consensus pattern (17 bp):
TAAAAATATGATTTTAA
Found at i:4049736 original size:30 final size:31
Alignment explanation
Indices: 4049679--4049737 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
4049669 TATTGTTAAC
* * **
4049679 AAATGAATCTAAATTTTTTAATTTAAAAAGT
1 AAATGAATCTAAATTCTTAAAAATAAAAAGT
4049710 AAATGAA-CTAAATTCTTAAAAATAAAAA
1 AAATGAATCTAAATTCTTAAAAATAAAAA
4049738 TATAGAGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 17 0.71
31 7 0.29
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (31 bp):
AAATGAATCTAAATTCTTAAAAATAAAAAGT
Found at i:4050338 original size:28 final size:27
Alignment explanation
Indices: 4050301--4050359 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
4050291 ATTTCATGTA
*
4050301 TTATTATA-TTAAATTATTTAAATATAAT
1 TTATTATATTTAAAAT-TTTAAA-ATAAT
* *
4050329 TTATTGTATTTAAAATTTTAAAATATT
1 TTATTATATTTAAAATTTTAAAATAAT
4050356 TTAT
1 TTAT
4050360 GTACATTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 8 0.30
28 13 0.48
29 6 0.22
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (27 bp):
TTATTATATTTAAAATTTTAAAATAAT
Found at i:4053027 original size:14 final size:14
Alignment explanation
Indices: 4053008--4053035 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
4052998 GATTAGATTA
4053008 ATTTTCATTATCTT
1 ATTTTCATTATCTT
4053022 ATTTTCATTATCTT
1 ATTTTCATTATCTT
4053036 TCCATTATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (14 bp):
ATTTTCATTATCTT
Found at i:4053397 original size:31 final size:31
Alignment explanation
Indices: 4053357--4053461 Score: 92
Period size: 31 Copynumber: 3.4 Consensus size: 31
4053347 ATTGGTGTAT
*
4053357 GCATATACAGCATATAGAGTGAATAGTAAAC
1 GCATCTACAGCATATAGAGTGAATAGTAAAC
* * * *
4053388 ACATCTACAGCAGCCTCATAGATTG-GT-GT--AT
1 GCATCTACAGCA---T-ATAGAGTGAATAGTAAAC
*
4053419 GCATATACAGCATATAGAGTGAATAGTAAAC
1 GCATCTACAGCATATAGAGTGAATAGTAAAC
4053450 GCATCTACAGCA
1 GCATCTACAGCA
4053462 GCCTTTACAG
Statistics
Matches: 55, Mismatches: 11, Indels: 16
0.67 0.13 0.20
Matches are distributed among these distances:
27 7 0.13
28 2 0.04
29 2 0.04
31 33 0.60
33 2 0.04
34 2 0.04
35 7 0.13
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (31 bp):
GCATCTACAGCATATAGAGTGAATAGTAAAC
Found at i:4053439 original size:62 final size:62
Alignment explanation
Indices: 4053342--4053465 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
4053332 TAGAATTATA
4053342 CATAGATTGGTGTATGCATATACAGCATATAGAGTGAATAGTAAACACATCTACAGCAGCCT
1 CATAGATTGGTGTATGCATATACAGCATATAGAGTGAATAGTAAACACATCTACAGCAGCCT
*
4053404 CATAGATTGGTGTATGCATATACAGCATATAGAGTGAATAGTAAACGCATCTACAGCAGCCT
1 CATAGATTGGTGTATGCATATACAGCATATAGAGTGAATAGTAAACACATCTACAGCAGCCT
4053466 TTACAGTCGA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (62 bp):
CATAGATTGGTGTATGCATATACAGCATATAGAGTGAATAGTAAACACATCTACAGCAGCCT
Found at i:4054797 original size:20 final size:21
Alignment explanation
Indices: 4054774--4054821 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
4054764 CTATTTTAAA
*
4054774 TATTTTTAAGACATGTAT-TT
1 TATTTTTAAAACATGTATATT
*
4054794 TATTTTTAAAACATTTATACTT
1 TATTTTTAAAACATGTATA-TT
4054816 TATTTT
1 TATTTT
4054822 AAATTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 16 0.67
22 8 0.33
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (21 bp):
TATTTTTAAAACATGTATATT
Found at i:4059579 original size:21 final size:22
Alignment explanation
Indices: 4059540--4059584 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
4059530 CATGATTTTG
* *
4059540 TAATTAAAAGTAAAGAAATGAA
1 TAATTAAAAGTAAAAAAATAAA
*
4059562 TAATTTAAA-TAAAAAAATAAA
1 TAATTAAAAGTAAAAAAATAAA
4059583 TA
1 TA
4059585 GATGAAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (22 bp):
TAATTAAAAGTAAAAAAATAAA
Found at i:4064349 original size:31 final size:31
Alignment explanation
Indices: 4064309--4064384 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 31
4064299 TTTACCAAAA
*
4064309 AATTAAATATAATAATAAATG-TGATTTAAAT
1 AATTTAATATAATAATAAATGAT-ATTTAAAT
4064340 AATTTAATATAAT--T-AATGATATTTAAAT
1 AATTTAATATAATAATAAATGATATTTAAAT
*
4064368 AATTTAATATATTAATA
1 AATTTAATATAATAATA
4064385 TATAAAACAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
28 24 0.62
29 2 0.05
30 1 0.03
31 12 0.31
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (31 bp):
AATTTAATATAATAATAAATGATATTTAAAT
Found at i:4064355 original size:18 final size:17
Alignment explanation
Indices: 4064337--4064386 Score: 50
Period size: 19 Copynumber: 2.8 Consensus size: 17
4064327 ATGTGATTTA
4064337 AATAATTTAATATAATT
1 AATAATTTAATATAATT
4064354 AATGATATTTAA-ATAATTT
1 AAT-A-ATTTAATATAA-TT
4064373 AAT-ATATTAATATA
1 AATAAT-TTAATATA
4064387 TAAAACATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
16 2 0.07
17 7 0.25
18 8 0.29
19 11 0.39
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
AATAATTTAATATAATT
Found at i:4064399 original size:28 final size:28
Alignment explanation
Indices: 4064336--4064408 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
4064326 AATGTGATTT
**
4064336 AAATAATTTAATATAATTAATGATATTT
1 AAATAATTTAATATAATTAATGATATAA
4064364 AAATAATTTAATAT-ATTAAT-ATATAA
1 AAATAATTTAATATAATTAATGATATAA
* *
4064390 AACATAAATTAATCTAATT
1 AA-ATAATTTAATATAATT
4064409 TTTATATACC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 6 0.15
27 16 0.41
28 17 0.44
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.42
Consensus pattern (28 bp):
AAATAATTTAATATAATTAATGATATAA
Found at i:4069993 original size:3 final size:3
Alignment explanation
Indices: 4069985--4070019 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
4069975 TTTTTCTTTA
4069985 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
4070020 AAAAAGGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:4070036 original size:11 final size:12
Alignment explanation
Indices: 4070019--4070051 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
4070009 TATTATTATT
4070019 AAAAAAGGAAAG
1 AAAAAAGGAAAG
4070031 -AAAAA-GAAAG
1 AAAAAAGGAAAG
4070041 AAAAAAGGAAA
1 AAAAAAGGAAA
4070052 TCTGAATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 5 0.26
11 10 0.53
12 4 0.21
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAAAAGGAAAG
Found at i:4087754 original size:14 final size:16
Alignment explanation
Indices: 4087725--4087756 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
4087715 ATTTATTTAC
4087725 TATATATAATATAAAA
1 TATATATAATATAAAA
4087741 TATA-ATAATA-AAAA
1 TATATATAATATAAAA
4087755 TA
1 TA
4087757 AAAATATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 6 0.38
16 4 0.25
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
TATATATAATATAAAA
Found at i:4087916 original size:21 final size:19
Alignment explanation
Indices: 4087891--4087951 Score: 52
Period size: 21 Copynumber: 3.0 Consensus size: 19
4087881 TAAAAATCTC
4087891 ATAATATAATATTTATAATT
1 ATAATATAATATTTA-AATT
**
4087911 AATAATATCTTATTTAATATT
1 -ATAATATAATATTTAA-ATT
4087932 A-AATACTAATATTTACAATT
1 ATAATA-TAATATTTA-AATT
4087952 GTACACACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
19 4 0.12
20 12 0.36
21 17 0.52
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (19 bp):
ATAATATAATATTTAAATT
Found at i:4101157 original size:126 final size:123
Alignment explanation
Indices: 4100872--4101125 Score: 381
Period size: 126 Copynumber: 2.0 Consensus size: 123
4100862 ACTCTAAATG
* *
4100872 TGAGAATCATTAGTTATGATATCAGTTTAGATAGACTCAACTTAGCATTGATATTAAGTTAAATA
1 TGAGAATCATTA-CTATGATATCAGTATAGATAGAC-CAACTTAGCATTGATATTAAGTTAAATA
4100937 AATTCAAATTTGACTTAAAAAAAATAATATATAAAGTGAAAATGTAATAAGAGATAAGTAATA
64 AATTCAAATTTGACTT---AAAAATAATATATAAAGTGAAAATGTAATAAGAGATAAGTAATA
* *
4101000 TGAGAATCATTAGTTATGATATCAGTTTAGATAGA-CAACTTAGCATTGATATTAAGTTAAATAA
1 TGAGAATCATTA-CTATGATATCAGTATAGATAGACCAACTTAGCATTGATATTAAGTTAAATAA
4101064 ATTCAAATTTGACTT-AAAATAATATATAAAGTGAAAA-GTTAATAAG-GATAAGTAATA
65 ATTCAAATTTGACTTAAAAATAATATATAAAGTGAAAATG-TAATAAGAGATAAGTAATA
4101121 TGAGA
1 TGAGA
4101126 TTTGGACATT
Statistics
Matches: 125, Mismatches: 0, Indels: 9
0.93 0.00 0.07
Matches are distributed among these distances:
121 17 0.14
122 29 0.23
126 44 0.35
128 35 0.28
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (123 bp):
TGAGAATCATTACTATGATATCAGTATAGATAGACCAACTTAGCATTGATATTAAGTTAAATAAA
TTCAAATTTGACTTAAAAATAATATATAAAGTGAAAATGTAATAAGAGATAAGTAATA
Found at i:4115868 original size:12 final size:12
Alignment explanation
Indices: 4115830--4115870 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
4115820 GAATGTACGC
*
4115830 GTATGAACTTAT
1 GTATGTACTTAT
*
4115842 GTATGTACATAT
1 GTATGTACTTAT
*
4115854 GTATGTACTTGT
1 GTATGTACTTAT
4115866 GTATG
1 GTATG
4115871 CATACATGCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.27, C:0.07, G:0.22, T:0.44
Consensus pattern (12 bp):
GTATGTACTTAT
Found at i:4123685 original size:10 final size:10
Alignment explanation
Indices: 4123672--4123712 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
4123662 ATCATTATTT
4123672 ATAATTTCTT-
1 ATAA-TTCTTA
4123682 ATAATTCTTA
1 ATAATTCTTA
4123692 ATAATTCTTA
1 ATAATTCTTA
*
4123702 ATAATTTTTA
1 ATAATTCTTA
4123712 A
1 A
4123713 ATATTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
9 5 0.17
10 24 0.83
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (10 bp):
ATAATTCTTA
Found at i:4124720 original size:17 final size:17
Alignment explanation
Indices: 4124682--4124721 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
4124672 TATCTTCTTT
*
4124682 TATAATATATATATATA
1 TATATTATATATATATA
4124699 TATATTATATATGAT-TA
1 TATATTATATAT-ATATA
4124716 TATATT
1 TATATT
4124722 GTTTAAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 19 0.90
18 2 0.10
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TATATTATATATATATA
Found at i:4124958 original size:22 final size:22
Alignment explanation
Indices: 4124933--4124978 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
4124923 AATAAACAAG
*
4124933 AAAAAAATCTTATACATCAAAC
1 AAAAAAATCTAATACATCAAAC
** *
4124955 AAAATTATCTAATACATTAAAC
1 AAAAAAATCTAATACATCAAAC
4124977 AA
1 AA
4124979 CAATATTACT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (22 bp):
AAAAAAATCTAATACATCAAAC
Found at i:4129819 original size:9 final size:9
Alignment explanation
Indices: 4129805--4129871 Score: 55
Period size: 9 Copynumber: 6.8 Consensus size: 9
4129795 TATTATTCTA
4129805 TAATTTTTT
1 TAATTTTTT
4129814 TAATTTTTT
1 TAATTTTTT
4129823 T-ATCTTTCTT
1 TAAT-TTT-TT
4129833 TATATATTTTT
1 TA-AT-TTTTT
4129844 TAGATTTTTT
1 TA-ATTTTTT
*
4129854 TGAAATTTTTA
1 T--AATTTTTT
4129865 TAATTTT
1 TAATTTT
4129872 CTAGAAAACA
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
8 2 0.04
9 19 0.39
10 9 0.18
11 13 0.27
12 6 0.12
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (9 bp):
TAATTTTTT
Found at i:4130454 original size:21 final size:21
Alignment explanation
Indices: 4130430--4130471 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
4130420 TCCTTCAATA
4130430 CATGAAAGAGAAAAAAAAAGG
1 CATGAAAGAGAAAAAAAAAGG
4130451 CATGAAAGAGAAAAAAAAAGG
1 CATGAAAGAGAAAAAAAAAGG
4130472 GAAAATTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.67, C:0.05, G:0.24, T:0.05
Consensus pattern (21 bp):
CATGAAAGAGAAAAAAAAAGG
Found at i:4132442 original size:29 final size:29
Alignment explanation
Indices: 4132409--4132466 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
4132399 TGCCACTACA
4132409 CCCTCAAGAAGATTAAAAAATAATACTAG
1 CCCTCAAGAAGATTAAAAAATAATACTAG
*
4132438 CCCTCAAGAAGATTAAAATATAATACTAG
1 CCCTCAAGAAGATTAAAAAATAATACTAG
4132467 TTTAATAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.50, C:0.17, G:0.10, T:0.22
Consensus pattern (29 bp):
CCCTCAAGAAGATTAAAAAATAATACTAG
Found at i:4141623 original size:23 final size:23
Alignment explanation
Indices: 4141597--4141643 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
4141587 TCAACATGTC
4141597 ATTCAATGTATTTTTCATTACTT
1 ATTCAATGTATTTTTCATTACTT
4141620 ATTCAATGTATTTTTCATTACTT
1 ATTCAATGTATTTTTCATTACTT
4141643 A
1 A
4141644 CTTTTCGGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.04, T:0.55
Consensus pattern (23 bp):
ATTCAATGTATTTTTCATTACTT
Found at i:4151708 original size:21 final size:18
Alignment explanation
Indices: 4151678--4151733 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 18
4151668 TATTGAAATC
*
4151678 ATAAATAAATTAACGTGATA
1 ATAAAAAAATTAAC-T-ATA
4151698 ATTAAAAAAATTAA-TATA
1 A-TAAAAAAATTAACTATA
4151716 ATAAAAAAATATAACTAT
1 ATAAAAAAAT-TAACTAT
4151734 TAACTTTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
17 9 0.28
18 7 0.22
19 4 0.12
20 1 0.03
21 11 0.34
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAAAAAAATTAACTATA
Found at i:4151949 original size:23 final size:20
Alignment explanation
Indices: 4151917--4151970 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 20
4151907 CTCCCCTCCC
*
4151917 CTCCCCTCCTCACCTCGACCAT
1 CTCCCCTCCTCACC-AGACC-T
4151939 CTCCCTCTCCTTCACCAGACCT
1 CTCCC-CTCC-TCACCAGACCT
4151961 CTCCCCTCCT
1 CTCCCCTCCT
4151971 TGGCCATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 1 0.03
21 4 0.14
22 11 0.38
23 8 0.28
24 5 0.17
ACGTcount: A:0.11, C:0.59, G:0.04, T:0.26
Consensus pattern (20 bp):
CTCCCCTCCTCACCAGACCT
Found at i:4155721 original size:27 final size:27
Alignment explanation
Indices: 4155691--4155759 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
4155681 TCAGAACCAC
4155691 TAGCCCAATAACCCAATAGCCTACCCT
1 TAGCCCAATAACCCAATAGCCTACCCT
4155718 TAGCCCAATAACCCAATAGCCTACCCT
1 TAGCCCAATAACCCAATAGCCTACCCT
*
4155745 CAGCCCAA-AACCCAA
1 TAGCCCAATAACCCAA
4155760 AACAAAAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
26 7 0.17
27 34 0.83
ACGTcount: A:0.36, C:0.42, G:0.07, T:0.14
Consensus pattern (27 bp):
TAGCCCAATAACCCAATAGCCTACCCT
Found at i:4156914 original size:3 final size:3
Alignment explanation
Indices: 4156908--4156939 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
4156898 TTGTTTATTC
4156908 TAT TAT TAT TAT TAT TAT TAT TAT TACT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT T
4156940 TGTTTATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:4157492 original size:16 final size:16
Alignment explanation
Indices: 4157473--4157503 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4157463 TACACCCATA
*
4157473 TATATGTACATATTTT
1 TATATATACATATTTT
4157489 TATATATACATATTT
1 TATATATACATATTT
4157504 ATCGTTTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATATACATATTTT
Found at i:4166543 original size:23 final size:24
Alignment explanation
Indices: 4166515--4166567 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
4166505 ACACTGATCC
* *
4166515 TTTTTATTTTTAAGT-ATATATAT
1 TTTTTATATGTAAGTAATATATAT
*
4166538 TTTTTATATGTACGTACATATATAT
1 TTTTTATATGTAAGTA-ATATATAT
4166563 TTTTT
1 TTTTT
4166568 TGTATATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 12 0.48
25 13 0.52
ACGTcount: A:0.28, C:0.04, G:0.06, T:0.62
Consensus pattern (24 bp):
TTTTTATATGTAAGTAATATATAT
Found at i:4166879 original size:30 final size:29
Alignment explanation
Indices: 4166845--4166902 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
4166835 TTTTGTAATT
4166845 TATTATATATACATATTTTAT-TTTTATGTC
1 TATTATA-ATA-ATATTTTATATTTTATGTC
* *
4166875 TATTATAATATTTTTTTATATTTTATGT
1 TATTATAATAATATTTTATATTTTATGT
4166903 ATTTGTTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.28
29 11 0.44
30 7 0.28
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.64
Consensus pattern (29 bp):
TATTATAATAATATTTTATATTTTATGTC
Found at i:4179033 original size:46 final size:44
Alignment explanation
Indices: 4178966--4179262 Score: 199
Period size: 44 Copynumber: 6.9 Consensus size: 44
4178956 ATAATACAGG
*
4178966 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA--TCAGA
* *
4179012 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-A-CAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATCAG--A
* * * * * *
4179056 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG-----GA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATCAGA
* * * * *
4179095 TCGTATCTCTCTGA-AGTTACAGTAGAGA-AGATC--A-CATCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAGAATCAGA
*
4179136 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA--TCAGA
* * ** * *
4179182 TCTTAT-TCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-AATCAGA
* * *
4179225 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA
4179263 CACTATCCTA
Statistics
Matches: 198, Mismatches: 35, Indels: 39
0.73 0.13 0.14
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 23 0.12
40 1 0.01
41 27 0.14
42 4 0.02
43 10 0.05
44 60 0.30
45 26 0.13
46 45 0.23
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATCAGA
Found at i:4179677 original size:174 final size:174
Alignment explanation
Indices: 4179222--4179706 Score: 523
Period size: 178 Copynumber: 2.8 Consensus size: 174
4179212 TTGAAGCCAG
*
4179222 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT-ATCCTATCTCCC-GAAGTT
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACACTAATCCTATCTCCCTGAAGTT
* * * * *
4179285 ACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGGTCGCATCA
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGCATCA
* * * * **
4179350 AGTCTTATTTCCCTGAAGATGCAGTGTAATCGATTGAAAACAAC
131 AGTCTTATTTCCCTGAAGATACAGCGGAATAGACCGAAAACAAC
* * ** * ** *
4179394 -GAATCTTAT-TCCCCTAAAGTTGTAGTGGAATAGATGGAAGCGAAGTCACT-ATCCTATCTCCC
1 AG-ATCTTATCT-CCCTGAGGTTACAGCGGAGCAGAT-----CGAAGACACTAATCCTATCTCCC
* *
4179456 TGAAGTTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAATAGAGTAGAT
59 TGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
* * * * ***
4179521 TGCATCAGGTCTTATTTCCCTGAGGTTACAGCGGAGTAGACCGAAGAATTGC
124 TGCATCAAGTCTTATTTCCCTGAAGATACAGCGGAATAGACCGAA-AACAAC
**
4179573 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTAAAGACA-TAATCCTATCTCCCTGAAGTT
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACACTAATCCTATCTCCCTGAAGTT
* * ** *
4179637 ACAGTGGAGCGGATTAAAATAAAGAATCTTATCCCTCTGAAGTGGCAGTAGAGTAGATTACATCC
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGCAT-C
4179702 AAGTC
130 AAGTC
4179707 AGAACACTCT
Statistics
Matches: 253, Mismatches: 47, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
171 2 0.01
172 23 0.09
173 1 0.00
174 80 0.32
175 5 0.02
177 21 0.08
178 92 0.36
179 27 0.11
180 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (174 bp):
AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACACTAATCCTATCTCCCTGAAGTT
ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGCATCA
AGTCTTATTTCCCTGAAGATACAGCGGAATAGACCGAAAACAAC
Found at i:4179696 original size:87 final size:85
Alignment explanation
Indices: 4179267--4179700 Score: 240
Period size: 87 Copynumber: 5.0 Consensus size: 85
4179257 CGAAGACACT
* * *
4179267 ATCCTATCTCCC-GAAGTTACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTAC
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAA-GATCTTATCCCTCTGAAGTTAC
* * *
4179331 AGCAGAGTAG-GTCGCATCA-
65 AGTAGAGTAGATTAGCATCAG
* * * * * * * * *
4179350 AGTCTTATTTCCCTGAAGATGCAGTGTAATC-GATTGAAAACAACGAATCTTATTCCC-CTAAAG
1 A-TCCTATCTCCCTGAAGTTACAGTG-GAGCGGATT-AAAATAAAG-ATCTTA-TCCCTCTGAAG
** * * * *
4179413 TTGTAGTGGAATAGATGGAAGCGAAGTCACT
61 TTACAGTAGAGTAGAT--TAGC--A-TCA-G
* *
4179444 ATCCTATCTCCCTGAAGTTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAA-GATCTTATCCCTCTGAAGTTAC
*
4179509 AATAGAGTAGATT-GCATCAG
65 AGTAGAGTAGATTAGCATCAG
* * * * * ** ** ** *
4179529 GTCTTATTTCCCTGAGGTTACAGCGGAGTAGACCGAAGAATTGCAGATCTTATCTCC-CTGAGGT
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGA-TTAA-AA-TAAAGATCTTATC-CCTCTGAAGT
** *
4179593 TACAGCGGAGCAGATTAAAGACAT-A-
62 TACAGTAGAGTAGATT--AG-CATCAG
**
4179618 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGAATCTTATCCCTCTGAAGTGGC
1 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAG-ATCTTATCCCTCTGAAGTTAC
4179683 AGTAGAGTAGATTA-CATC
65 AGTAGAGTAGATTAGCATC
4179701 CAAGTCAGAA
Statistics
Matches: 251, Mismatches: 72, Indels: 55
0.66 0.19 0.15
Matches are distributed among these distances:
83 4 0.02
84 9 0.04
85 40 0.16
86 36 0.14
87 60 0.24
88 5 0.02
89 29 0.12
90 2 0.01
91 7 0.03
92 33 0.13
93 25 0.10
94 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (85 bp):
ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGATCTTATCCCTCTGAAGTTACA
GTAGAGTAGATTAGCATCAG
Found at i:4180009 original size:27 final size:27
Alignment explanation
Indices: 4179979--4180047 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
4179969 TCAGAACCAC
4179979 TAGCCCAATAACCCAATAGCCTACCCT
1 TAGCCCAATAACCCAATAGCCTACCCT
4180006 TAGCCCAATAACCCAATAGCCTACCCT
1 TAGCCCAATAACCCAATAGCCTACCCT
*
4180033 CAGCCCAA-AACCCAA
1 TAGCCCAATAACCCAA
4180048 AACAAAAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
26 7 0.17
27 34 0.83
ACGTcount: A:0.36, C:0.42, G:0.07, T:0.14
Consensus pattern (27 bp):
TAGCCCAATAACCCAATAGCCTACCCT
Found at i:4181222 original size:3 final size:3
Alignment explanation
Indices: 4181216--4181247 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
4181206 TTGTTTATTC
4181216 TAT TAT TAT TAT TAT TAT TAT TAT TACT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT T
4181248 TGTTTATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:4181803 original size:16 final size:16
Alignment explanation
Indices: 4181784--4181814 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4181774 TACACCCATA
*
4181784 TATATGTACATATTTT
1 TATATATACATATTTT
4181800 TATATATACATATTT
1 TATATATACATATTT
4181815 ATCGTTTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATATACATATTTT
Found at i:4185989 original size:19 final size:19
Alignment explanation
Indices: 4185958--4185994 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
4185948 TTTTATCAAA
4185958 TTATATTTAAAATTGTATT
1 TTATATTTAAAATTGTATT
4185977 TTATCATTT-AAATTGTAT
1 TTAT-ATTTAAAATTGTAT
4185995 CTCCACATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (19 bp):
TTATATTTAAAATTGTATT
Found at i:4186891 original size:15 final size:15
Alignment explanation
Indices: 4186871--4186920 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
4186861 TTGACTTAAA
4186871 TTATATTTTAATTAT
1 TTATATTTTAATTAT
**
4186886 TTATA-TTTAAAAAT
1 TTATATTTTAATTAT
*
4186900 TTATGTTTTAATTAT
1 TTATATTTTAATTAT
4186915 TTATAT
1 TTATAT
4186921 AATCGTTTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (15 bp):
TTATATTTTAATTAT
Found at i:4187040 original size:14 final size:14
Alignment explanation
Indices: 4187021--4187051 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
4187011 TAATTAATGT
4187021 TTTAATTAAATGAA
1 TTTAATTAAATGAA
*
4187035 TTTAATTAATTGAA
1 TTTAATTAAATGAA
4187049 TTT
1 TTT
4187052 TTAAATTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
TTTAATTAAATGAA
Found at i:4196848 original size:4 final size:4
Alignment explanation
Indices: 4196839--4196863 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
4196829 TTTGAGGATC
4196839 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
4196864 TAAAAATCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:4197097 original size:2 final size:2
Alignment explanation
Indices: 4197090--4197116 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4197080 ATAAACACGA
4197090 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
4197117 AGATGATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4200425 original size:15 final size:15
Alignment explanation
Indices: 4200405--4200435 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
4200395 CCAACCTTCA
4200405 AATTTTACCTCAATT
1 AATTTTACCTCAATT
4200420 AATTTTACCTCAATT
1 AATTTTACCTCAATT
4200435 A
1 A
4200436 TACATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTTACCTCAATT
Found at i:4204223 original size:93 final size:92
Alignment explanation
Indices: 4204091--4204285 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
4204081 TTGATTTTAG
* *
4204091 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
4204155 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
4204183 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
4204248 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
4204276 CAAATTCATA
1 TAAATTCATA
4204286 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:4204343 original size:17 final size:17
Alignment explanation
Indices: 4204318--4204351 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
4204308 ATAATTTTAA
*
4204318 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
4204335 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
4204352 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:4204353 original size:15 final size:16
Alignment explanation
Indices: 4204318--4204356 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
4204308 ATAATTTTAA
*
4204318 ATTTTATTAAATCATAT
1 ATTTAATTAAATCA-AT
4204335 ATTTAATTAAATC-AT
1 ATTTAATTAAATCAAT
4204350 ATTTAAT
1 ATTTAAT
4204357 ATTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTAATTAAATCAAT
Found at i:4204360 original size:17 final size:18
Alignment explanation
Indices: 4204322--4204361 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
4204312 TTTTAAATTT
*
4204322 TATTAAATCATATATTTA
1 TATTAAATCATATATTAA
4204340 -ATTAAATCATAT-TTAA
1 TATTAAATCATATATTAA
4204356 TATTAA
1 TATTAA
4204362 TTATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTAAATCATATATTAA
Found at i:4204457 original size:119 final size:119
Alignment explanation
Indices: 4204317--4204607 Score: 448
Period size: 119 Copynumber: 2.4 Consensus size: 119
4204307 AATAATTTTA
* * *
4204317 AATTTTATTAAATCATATA-TTTAATTA-AATCATATTTAATATTAATTAT-TTGAAATTT-TCT
1 AATTTTATTAAATTATATATTTTAATTATAAT-ATATTTAATAATAATTATGTT--AATTTATAT
* *
4204378 TTTATAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAAT-TTTATTTATTAAG
63 TTTACAGTAT-ATATATTATGATTTGAGTAAATTCATAGAAGAATATTAATTT-TTAAG
4204436 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
*
4204501 ACAGTATATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTTAAG
66 ACAGTATATATATTATGATTTGAGTAAATTCATAGAAGAATATTAATTTTTAAG
4204555 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
4204608 TAAATATGAT
Statistics
Matches: 161, Mismatches: 6, Indels: 10
0.91 0.03 0.06
Matches are distributed among these distances:
119 114 0.71
120 42 0.26
121 5 0.03
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.51
Consensus pattern (119 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATATATATTATGATTTGAGTAAATTCATAGAAGAATATTAATTTTTAAG
Found at i:4204476 original size:15 final size:15
Alignment explanation
Indices: 4204441--4204492 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
4204431 TTAAGAATTT
*
4204441 TATTAAATTAT-ATA
1 TATTTAATTATAATA
4204455 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
4204469 TATTTAATAATAAT-
1 TATTTAATTATAATA
4204483 TATGTTAATT
1 TAT-TTAATT
4204493 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:4204590 original size:16 final size:16
Alignment explanation
Indices: 4204569--4204610 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
4204559 TTATTAAATT
*
4204569 ATATATTTTAATTATA
1 ATATATTTTAATAATA
4204585 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
4204600 AT-TATGTTTAA
1 ATATAT-TTTAA
4204611 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:4204595 original size:15 final size:15
Alignment explanation
Indices: 4204560--4204601 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
4204550 TTAAGAATTT
*
4204560 TATTAAATTAT-ATA
1 TATTTAATTATAATA
4204574 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
4204588 TATTTAATAATAAT
1 TATTTAATTATAAT
4204602 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:4204627 original size:154 final size:152
Alignment explanation
Indices: 4204536--4204847 Score: 453
Period size: 154 Copynumber: 2.0 Consensus size: 152
4204526 AAATTCATAT
* * *
4204536 AAGAATATTAATTTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAA
1 AAGAATACTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
* *
4204601 TTATGTTTAAATATGATTAAATTATTTATTATTGATATTAATCTTATTAAAATTTAAATAACAAT
66 TTATGTTTAAATATGATTAAATTATTTAATAATGATATTAATCTTATTAAAATTT--ATAACAAT
4204666 AACAATAATAATTTACCAAAACAA
129 AACAATAATAATTTACCAAAACAA
*** *
4204690 ATTTATGCTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
1 AAGAATACTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
* *
4204755 TTATGTTTAAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAAC
66 TTATGTTTAAATATGATTAAATTATTTAATAATGAT-AT--TAATCTTATTAAAATTT--ATAAC
*
4204820 AATAACAATAATCATTTACCAAAACAA
126 AATAACAATAATAATTTACCAAAACAA
4204847 A
1 A
4204848 TTTATGCTAA
Statistics
Matches: 147, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
154 94 0.64
155 2 0.01
157 51 0.35
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.44
Consensus pattern (152 bp):
AAGAATACTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAA
TTATGTTTAAATATGATTAAATTATTTAATAATGATATTAATCTTATTAAAATTTATAACAATAA
CAATAATAATTTACCAAAACAA
Found at i:4204738 original size:18 final size:17
Alignment explanation
Indices: 4204710--4204744 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
4204700 ATTATTAAGA
*
4204710 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
4204727 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
4204745 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:4204778 original size:75 final size:75
Alignment explanation
Indices: 4204545--4204780 Score: 203
Period size: 75 Copynumber: 3.1 Consensus size: 75
4204535 TAAGAATATT
* *
4204545 AATTTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
4204610 AATATGATTA
66 AATATGATTA
* ** * * * * * * *
4204620 AATTATTTATTATTGATATTAATCTTATTAAAATTTAAATAACAATA-A--CAATAATAATT-TA
1 AATTATTAAGAATT-TTATTAA-ATTA-TATATTTTAATTAA-AATATATTTAATAATAATTATG
*** * *
4204681 CCAAAACA-AATTTA
62 TTTAAATATGA-TTA
4204695 TGCTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
1 ----AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
4204760 TTTAAATATGATTA
62 TTTAAATATGATTA
4204774 AATTATT
1 AATTATT
4204781 TATTATTGAT
Statistics
Matches: 115, Mismatches: 32, Indels: 28
0.66 0.18 0.16
Matches are distributed among these distances:
74 1 0.01
75 29 0.25
76 28 0.24
77 6 0.05
78 27 0.23
79 23 0.20
80 1 0.01
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (75 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTA
Found at i:4204998 original size:16 final size:16
Alignment explanation
Indices: 4204977--4205015 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
4204967 TTGATTTGCT
*
4204977 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
4204993 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
4205009 ATTACAC
1 ATTACAC
4205016 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:4205016 original size:16 final size:16
Alignment explanation
Indices: 4204989--4205030 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
4204979 TACACAGCTT
4204989 TTCCATTACACCTCTA
1 TTCCATTACACCTCTA
4205005 TTCCATTACACCTCTA
1 TTCCATTACACCTCTA
* *
4205021 ATCCAATACA
1 TTCCATTACA
4205031 GCCTGTTAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.31, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
TTCCATTACACCTCTA
Found at i:4215249 original size:8 final size:8
Alignment explanation
Indices: 4215205--4215240 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
4215195 AATACAACTT
4215205 AAAAT-AA
1 AAAATAAA
4215212 AAAATAAA
1 AAAATAAA
4215220 AAAATAAA
1 AAAATAAA
4215228 AAAATAAA
1 AAAATAAA
4215236 GAAAA
1 -AAAA
4215241 AGAAAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 5 0.19
8 18 0.67
9 4 0.15
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (8 bp):
AAAATAAA
Found at i:4216441 original size:19 final size:19
Alignment explanation
Indices: 4216417--4216454 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
4216407 TTGAGATTGC
*
4216417 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
4216436 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
4216455 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:4227175 original size:24 final size:24
Alignment explanation
Indices: 4227148--4227235 Score: 140
Period size: 24 Copynumber: 3.7 Consensus size: 24
4227138 CAGATTTGAG
4227148 TGGCACTATGTGTGCGTATTTGTA
1 TGGCACTATGTGTGCGTATTTGTA
*
4227172 TGGCACTATGTGTGCGTATATGTA
1 TGGCACTATGTGTGCGTATTTGTA
* * *
4227196 TGGCACTATGTGTGCGTAATTATT
1 TGGCACTATGTGTGCGTATTTGTA
4227220 TGGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
4227236 GAGTTGAATC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.18, C:0.14, G:0.30, T:0.39
Consensus pattern (24 bp):
TGGCACTATGTGTGCGTATTTGTA
Found at i:4234772 original size:24 final size:24
Alignment explanation
Indices: 4234757--4234916 Score: 266
Period size: 24 Copynumber: 6.7 Consensus size: 24
4234747 CGGATTTGAG
4234757 TGGCACTATGTGTGCGTATTTGTA
1 TGGCACTATGTGTGCGTATTTGTA
4234781 TGGCACTATGTGTGCGTATTTGTA
1 TGGCACTATGTGTGCGTATTTGTA
*
4234805 TGGCACTATGTGTGCATATTTGTA
1 TGGCACTATGTGTGCGTATTTGTA
*
4234829 TGGCACTATGTGTGCGTATATGTA
1 TGGCACTATGTGTGCGTATTTGTA
*
4234853 TGGCACTATGTGTGCGTATATGTA
1 TGGCACTATGTGTGCGTATTTGTA
* * *
4234877 TGGCACTATGTGTGCGTAATTATT
1 TGGCACTATGTGTGCGTATTTGTA
4234901 TGGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
4234917 GAGTTGAATC
Statistics
Matches: 129, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 129 1.00
ACGTcount: A:0.19, C:0.13, G:0.29, T:0.39
Consensus pattern (24 bp):
TGGCACTATGTGTGCGTATTTGTA
Found at i:4239578 original size:47 final size:46
Alignment explanation
Indices: 4239524--4239662 Score: 114
Period size: 47 Copynumber: 3.1 Consensus size: 46
4239514 TCAGGCAGGG
4239524 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
1 AGCAGATCGAA-ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
* * * * * * *
4239571 AGTAGATC----CA-AGATGATTTGGC-ATCTC-TGTATCAGGCG-GGG
1 AGCAGATCGAAACATAGCTGATTTGGCTTTCACGTGT-TTA--CGTTGA
4239612 AGCAGATCGAATACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
1 AGCAGATCGAA-ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
4239659 AGCA
1 AGCA
4239663 AATCCAAGAT
Statistics
Matches: 66, Mismatches: 14, Indels: 24
0.63 0.13 0.23
Matches are distributed among these distances:
39 3 0.05
40 5 0.08
41 19 0.29
42 4 0.06
46 4 0.06
47 23 0.35
48 5 0.08
49 3 0.05
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (46 bp):
AGCAGATCGAAACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
Found at i:4239640 original size:88 final size:88
Alignment explanation
Indices: 4239491--4239711 Score: 354
Period size: 88 Copynumber: 2.5 Consensus size: 88
4239481 TGAAGATTTT
* *
4239491 CAAGATGATTTGGCATTTCTGTATCAGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTC
1 CAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTC
* *
4239556 ACGTGTTTACGTTGAAGTAGATC
66 ACGTGTTTACGTTGAAGCAAATC
*
4239579 CAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAATACATAGCTGATTTGGCTTTC
1 CAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTC
4239644 ACGTGTTTACGTTGAAGCAAATC
66 ACGTGTTTACGTTGAAGCAAATC
* * * *
4239667 CAAGATGATTTGGCGTCTCTGTAGC-GGCGGAGAGCAGATCAAAGA
1 CAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGA
4239712 TAACAGATTT
Statistics
Matches: 123, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
87 17 0.14
88 106 0.86
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (88 bp):
CAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTC
ACGTGTTTACGTTGAAGCAAATC
Found at i:4239727 original size:44 final size:44
Alignment explanation
Indices: 4239673--4240121 Score: 680
Period size: 44 Copynumber: 10.4 Consensus size: 44
4239663 AATCCAAGAT
*
4239673 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
4239717 GATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
4239761 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
4239801 GATTTGGCATCTCTGTAGGGGCGGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
4239845 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
4239889 GATTTGGCATCTCTGTAGTGGCAGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
4239933 GATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* **
4239973 GATTTGGCATCTCTGTAGCGGCAAAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
4240017 AATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATTGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
4240061 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
4240105 GATTTGGCGTCTCTGTA
1 GATTTGGCGTCTCTGTA
4240122 TTAGACGGGA
Statistics
Matches: 366, Mismatches: 31, Indels: 16
0.89 0.08 0.04
Matches are distributed among these distances:
40 75 0.20
44 291 0.80
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.22
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:4239802 original size:128 final size:129
Alignment explanation
Indices: 4239659--4240121 Score: 668
Period size: 128 Copynumber: 3.6 Consensus size: 129
4239649 TTTACGTTGA
* * *
4239659 AGCAAATCCAAGAT-GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAACAGATTTG
1 AGCAGATCGAAGATAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTG
4239723 GCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAG
66 GCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAG
* * *
4239787 AGCAGATCGAAGAT-GATTTGGCATCTCTGTAGGGGCGGAGAGCAGATCGAAGATAATAGATTTG
1 AGCAGATCGAAGATAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTG
* * *
4239851 GCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGTGGCAGAG
66 GCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAG
* *
4239915 AGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGAT----GAT
1 AGCAGATCGAAGAT---AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGAT
* * * * *
4239976 TTGGCATCTCTGTAGCGGCAAAGAGCAGATCGAAGATAACAAATTTGGCGTCTCCGTAGCGGCGG
63 TTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAG
4240041 AG
128 AG
* *
4240043 AGCAGATTGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACGGAT
1 AGCAGATCGAAGAT---AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGAT
4240108 TTGGCGTCTCTGTA
63 TTGGCGTCTCTGTA
4240122 TTAGACGGGA
Statistics
Matches: 302, Mismatches: 25, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
128 249 0.82
132 53 0.18
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (129 bp):
AGCAGATCGAAGATAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTG
GCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAG
Found at i:4239865 original size:172 final size:172
Alignment explanation
Indices: 4239673--4240121 Score: 749
Period size: 172 Copynumber: 2.6 Consensus size: 172
4239663 AATCCAAGAT
*
4239673 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
4239738 CGAAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGC-AGAGAGCAGATCGAAGATG
66 CGAAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGA-AGAGCAGATCGAAGATG
* ** *
4239802 ATTTGGCATCTCTGTAGGGGCGGAGAGCAGATCGAAGATAATA
130 ATTTGGCATCTCTGTAGCGGCAAAGAGCAGATCGAAGATAACA
* *
4239845 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGTGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
*
4239910 C-AGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATG
66 CGA-AGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATG
4239974 ATTTGGCATCTCTGTAGCGGCAAAGAGCAGATCGAAGATAACA
130 ATTTGGCATCTCTGTAGCGGCAAAGAGCAGATCGAAGATAACA
* * *
4240017 AATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATTGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* *
4240082 CGGAGAGCAGATCGAAGATAACGGATTTGGCGTCTCTGTA
66 CGAAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA
4240122 TTAGACGGGA
Statistics
Matches: 258, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
171 1 0.00
172 256 0.99
173 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.22
Consensus pattern (172 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
CGAAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATGA
TTTGGCATCTCTGTAGCGGCAAAGAGCAGATCGAAGATAACA
Found at i:4240436 original size:9 final size:9
Alignment explanation
Indices: 4240417--4240458 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
4240407 AACCCAAAAT
4240417 AAAAAAT-A
1 AAAAAATAA
4240425 AAAAAATAA
1 AAAAAATAA
4240434 AAAAAATGAA
1 AAAAAAT-AA
* *
4240444 GAAAAAGAA
1 AAAAAATAA
4240453 AAAAAA
1 AAAAAA
4240459 CCTAACCTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
8 7 0.24
9 15 0.52
10 7 0.24
ACGTcount: A:0.86, C:0.00, G:0.07, T:0.07
Consensus pattern (9 bp):
AAAAAATAA
Found at i:4241651 original size:19 final size:19
Alignment explanation
Indices: 4241627--4241663 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
4241617 TGAGATTGCT
*
4241627 AACCTATTTGCTTGAAATC
1 AACCTATTTGCCTGAAATC
4241646 AACCTATTTGCCTGAAAT
1 AACCTATTTGCCTGAAAT
4241664 TATTCATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (19 bp):
AACCTATTTGCCTGAAATC
Found at i:4245894 original size:21 final size:21
Alignment explanation
Indices: 4245868--4245908 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4245858 AGACGAGCAA
* *
4245868 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
4245889 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
4245909 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:4251141 original size:19 final size:20
Alignment explanation
Indices: 4251101--4251144 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
4251091 GTTTCTTTTG
* *
4251101 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
4251120 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
4251139 GCATTA
1 GCATTA
4251145 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:4255496 original size:134 final size:134
Alignment explanation
Indices: 4255266--4255977 Score: 1300
Period size: 134 Copynumber: 5.3 Consensus size: 134
4255256 TTGAAGTTAT
4255266 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
4255331 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
66 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
4255396 ATTG
131 ATTG
* *
4255400 CAGATCTTGCCTTCCTGTATTAGGCAGCGAAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
4255465 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
66 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
4255530 ATTG
131 ATTG
4255534 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
4255599 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
66 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
4255664 ATTG
131 ATTG
4255668 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
*
4255733 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
66 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
4255798 ATTG
131 ATTG
* *
4255802 CAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAT
1 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
* ** *
4255867 TACAGTGGAGTACATTGAAGCTGATAGTTCTATCTCCCTGTATCGGGCAGTGGAATAGATTGAAG
66 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
*
4255932 ATAG
131 ATTG
* * *
4255936 CAGATCTTGCCTTCCTGCA-CTGACAGCGAAGCAGATCGAAGA
1 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGA
4255978 CAAACCTTGC
Statistics
Matches: 561, Mismatches: 17, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
133 20 0.04
134 541 0.96
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (134 bp):
CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
ATTG
Found at i:4255524 original size:88 final size:91
Alignment explanation
Indices: 4255432--4255821 Score: 228
Period size: 88 Copynumber: 4.4 Consensus size: 91
4255422 GGCAGCGAAG
*
4255432 TAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATAACT
1 TAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAGTACATTGAAGCCGATAACT
*
4255494 CTATCTCCCTGTATCTGGCAGTGGAA
66 CTACCTCCCTGTATCTGGCAGTGGAA
* * * * * * * * * * * ** ** *
4255520 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAGTACATTGAAGCCGATA-AC
* * *
4255585 TTTACCTCCCTG-A-CT-ACAGTGGAG
65 TCTACCTCCCTGTATCTGGCAGTGGAA
* ** ** * * * * * * ** * *
4255609 TACATTGAAGCCGATA-ACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGAT
1 TAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAGTACATTGAAG-CCG-ATAA
* * * *
4255673 CT-TGCCTTCCTGTATTTGGCAG-CGAA
64 CTCTACCTCCCTGTATCTGGCAGTGGAA
* *
4255699 GCAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATAAC
1 -TAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAGTACATTGAAGCCGATAAC
* *
4255761 TCTATCTCCCTGTATTTGGCAGTGGAA
65 TCTACCTCCCTGTATCTGGCAGTGGAA
* * * *
4255788 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTAT
1 TAGATTGAAGATGGCAGATTTTACCTCCCTGTAT
4255822 TTGGCAGCAA
Statistics
Matches: 210, Mismatches: 77, Indels: 28
0.67 0.24 0.09
Matches are distributed among these distances:
87 4 0.02
88 104 0.50
89 42 0.20
90 9 0.04
91 29 0.14
92 22 0.10
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (91 bp):
TAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAGTACATTGAAGCCGATAACT
CTACCTCCCTGTATCTGGCAGTGGAA
Found at i:4256057 original size:220 final size:222
Alignment explanation
Indices: 4255792--4256200 Score: 671
Period size: 222 Copynumber: 1.8 Consensus size: 222
4255782 GTGGAATAGA
4255792 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCGAAGATGGCAGATTTTA
* * **
4255857 CCTCCC-TGATTACAGTGGAGTACATTGAAGCTGATAGTTCTATCTCCCTGTATCGGGCAGTGGA
66 CCTCCCGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCGGGCAGTGGA
4255921 ATAGATTGAAGATAGCAGATCTTGCCTTCCTGCA-CTGACAGCGAAGCAGATCGAAGACAAACCT
131 ATAGATTGAAGATAGCAGATCTTGCCTTCCTGCATCTGACAGCGAAGCAGATCGAAGACAAACCT
4255985 TGCCTCTCTCGTTTGTAGCAGAGCTGG
196 TGCCTCTCTCGTTTGTAGCAGAGCTGG
* * *
4256012 TTGAAGATAT-CAGATCTTTCTTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCGAAGATGGCAGATTTT
*
4256076 ACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTG
65 ACCTCCC-GTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCGGGCAGTG
* * * *
4256141 GAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGA
129 GAATAGATTGAAGATAGCAGATCTTGCCTTCCTGCATCTGACAGCGAAGCAGATCGAAGA
4256201 TGGCAGATTT
Statistics
Matches: 173, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
220 66 0.38
221 1 0.01
222 85 0.49
223 21 0.12
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (222 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCGAAGATGGCAGATTTTA
CCTCCCGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCGGGCAGTGGA
ATAGATTGAAGATAGCAGATCTTGCCTTCCTGCATCTGACAGCGAAGCAGATCGAAGACAAACCT
TGCCTCTCTCGTTTGTAGCAGAGCTGG
Found at i:4256151 original size:45 final size:45
Alignment explanation
Indices: 4256075--4256289 Score: 120
Period size: 45 Copynumber: 4.8 Consensus size: 45
4256065 TGGCAGATTT
* * * *
4256075 TACCTCCCTGTGA-CT-ACAGTGGAGTACATTGAAGCCGATAACTC
1 TACCTCCCTGT-ATCTGGCAGTGGAATAGATTGAAGTCGATAACTC
* * * *
4256119 TATCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCT-
1 TACCTCCCTGTATCTGGCAGTGGAATAGATTGAAG-TCG-ATAACTC
* * * * * * * * * *
4256165 TGCCTTCCTGTATTTGGCAG-CGAAGCAGATCGAAGATGGCA-GATTT
1 TACCTCCCTGTATCTGGCAGTGGAA-TAGATTGAAG-TCG-ATAACTC
* *
4256211 TACCTCCCTGTGA-CT-ACAGTGGAGTAGATTGAAGTCGATAACTC
1 TACCTCCCTGT-ATCTGGCAGTGGAATAGATTGAAGTCGATAACTC
* *
4256255 TATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
1 TACCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
4256290 ATTGCAGATC
Statistics
Matches: 125, Mismatches: 35, Indels: 21
0.69 0.19 0.12
Matches are distributed among these distances:
43 3 0.02
44 27 0.22
45 48 0.38
46 42 0.34
47 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (45 bp):
TACCTCCCTGTATCTGGCAGTGGAATAGATTGAAGTCGATAACTC
Found at i:4256184 original size:402 final size:400
Alignment explanation
Indices: 4255266--4256085 Score: 986
Period size: 402 Copynumber: 2.0 Consensus size: 400
4255256 TTGAAGTTAT
* * * * * * * * *
4255266 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTACCTCCCTGTATCTGACAGCGAAGCACATCGAAGACGACAGACTCTACCTCCCTGAC
* * * *
4255331 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
66 TACAGTGGAATACATTGAAGCCGAGAACTCTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
* *
4255396 ATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGTAGATCGAAGATGGCAGATTTTACCTCCC
131 ATTGCAGATCTTGCCTTCCTGTATTAGGCAGCAAAGCAGATCGAAGATGGCAGATTTTACCTCCC
*
4255461 TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATT
196 TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCGGGCAGTGGAATAGATT
* * * * * **
4255526 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
261 GAAGATAGCAGATCTTGCCTTCCTGCATCTGACAGCGAAGCAGATCGAAGA--GCAAACCTTACC
** * * *
4255591 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATA
324 TCCCTGACTACAGCAGAGTACATTGAAGCAGATAACTCTATCTCCCTGTATCTGGCAGTCGAACA
* *
4255656 GATTGAAGATTG
389 GATCGAAGATGG
* * * * * * * * *
4255668 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTACCTCCCTGTATCTGACAGCGAAGCACATCGAAGACGACAGACTCTACCTCCCTGAC
* * *
4255733 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
66 TACAGTGGAATACATTGAAGCCGAGAACTCTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
*
4255798 ATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCGAAGATGGCAGATTTTACCTCCC
131 ATTGCAGATCTTGCCTTCCTGTATTAGGCAGCAAAGCAGATCGAAGATGGCAGATTTTACCTCCC
* * **
4255863 TGATTACAGTGGAGTACATTGAAGCTGATAGTTCTATCTCCCTGTATCGGGCAGTGGAATAGATT
196 TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCGGGCAGTGGAATAGATT
*
4255928 GAAGATAGCAGATCTTGCCTTCCTGCA-CTGACAGCGAAGCAGATCGAAGA-CAAACCTTGCCTC
261 GAAGATAGCAGATCTTGCCTTCCTGCATCTGACAGCGAAGCAGATCGAAGAGCAAACCTTACCTC
* ** ** ** * * * *
4255991 TCTCGTTTGTAGCAGAGCT-GGTTGAAG-ATATCAGA-TCTTTCTTTCCTGTATTTGGCAG-CGA
326 CCT-GACTACAGCAGAG-TACATTGAAGCAGAT-A-ACTCTATC-TCCCTGTATCTGGCAGTCGA
4256052 AGCAGATCGAAGATGG
386 A-CAGATCGAAGATGG
*
4256068 CAGATTTTACCTCCCTGT
1 CAGATCTTACCTCCCTGT
4256086 GACTACAGTG
Statistics
Matches: 374, Mismatches: 38, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
398 13 0.03
399 22 0.06
400 42 0.11
401 21 0.06
402 276 0.74
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (400 bp):
CAGATCTTACCTCCCTGTATCTGACAGCGAAGCACATCGAAGACGACAGACTCTACCTCCCTGAC
TACAGTGGAATACATTGAAGCCGAGAACTCTACCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
ATTGCAGATCTTGCCTTCCTGTATTAGGCAGCAAAGCAGATCGAAGATGGCAGATTTTACCTCCC
TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCGGGCAGTGGAATAGATT
GAAGATAGCAGATCTTGCCTTCCTGCATCTGACAGCGAAGCAGATCGAAGAGCAAACCTTACCTC
CCTGACTACAGCAGAGTACATTGAAGCAGATAACTCTATCTCCCTGTATCTGGCAGTCGAACAGA
TCGAAGATGG
Found at i:4256200 original size:356 final size:355
Alignment explanation
Indices: 4255658--4256308 Score: 1128
Period size: 356 Copynumber: 1.8 Consensus size: 355
4255648 GTGGAATAGA
4255658 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
*
4255723 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA
4255788 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCGAAGATGGCAGAT
131 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCGAAGATGGCAGAT
* **
4255853 TTTACCTCCC-TGATTACAGTGGAGTACATTGAAG-CTGATAGTTCTATCTCCCTGTATCGGGCA
196 TTTACCTCCCGTGACTACAGTGGAGTACATTGAAGTC-GATAACTCTATCTCCCTGTATCGGGCA
4255916 GTGGAATAGATTGAAGATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACAA
260 GTGGAATAGATTGAAGATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACAA
4255981 ACCTTGCCTCTCTCGTTTGTAGCAGAGCTGG
325 ACCTTGCCTCTCTCGTTTGTAGCAGAGCTGG
* *
4256012 TTGAAGATAT-CAGATCTTTCTTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
4256076 ACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTG
65 ACCTCCC--TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTG
*
4256141 GAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCA
128 GAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCGAAGATGGCA
* **
4256206 GATTTTACCTCCCTGTGACTACAGTGGAGTAGATTGAAGTCGATAACTCTATCTCCCTGTATTTG
193 GATTTTACCTCCC-GTGACTACAGTGGAGTACATTGAAGTCGATAACTCTATCTCCCTGTATCGG
* *
4256271 GCAGTGGAATAGATTGAAGATTGCAGATCTTGTCTTCC
257 GCAGTGGAATAGATTGAAGATAGCAGATCTTGCCTTCC
4256309 CATATTGGTG
Statistics
Matches: 279, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
354 67 0.24
355 1 0.00
356 132 0.47
358 78 0.28
359 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (355 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA
TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCGAAGATGGCAGAT
TTTACCTCCCGTGACTACAGTGGAGTACATTGAAGTCGATAACTCTATCTCCCTGTATCGGGCAG
TGGAATAGATTGAAGATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACAAA
CCTTGCCTCTCTCGTTTGTAGCAGAGCTGG
Found at i:4256256 original size:136 final size:136
Alignment explanation
Indices: 4256012--4256308 Score: 524
Period size: 136 Copynumber: 2.2 Consensus size: 136
4256002 GCAGAGCTGG
* *
4256012 TTGAAGATAT-CAGATCTTTCTTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
4256076 ACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTG
65 ACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTG
4256141 GAATAGA
130 GAATAGA
4256148 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
* * *
4256213 CCTCCCTGTGACTACAGTGGAGTAGATTGAAGTCGATAACTCTATCTCCCTGTATTTGGCAGTGG
66 CCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGG
4256278 AATAGA
131 AATAGA
*
4256284 TTGAAGATTGCAGATCTTGTCTTCC
1 TTGAAGATTGCAGATCTTGCCTTCC
4256309 CATATTGGTG
Statistics
Matches: 154, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
135 1 0.01
136 153 0.99
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (136 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
CCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGG
AATAGA
Found at i:4256385 original size:44 final size:43
Alignment explanation
Indices: 4256276--4256777 Score: 393
Period size: 44 Copynumber: 11.4 Consensus size: 43
4256266 ATTTGGCAGT
* * * *
4256276 GGAA-TAGATTGAAGATTGCAGATCTTGTCTTCCCATATTGGTG
1 GGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-C
* * * * *
4256319 GCGAAGTAGATCGCAGAAAGCAGATCTTATCTTCATGTATTGGC
1 G-GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGC
* * * *
4256363 GTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTA
1 G-GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-C
* * *
4256408 GGAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCAT-TTGGTG
1 GGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-C
* * * *
4256450 GCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
1 G-GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGC
* * ** *
4256494 GTGAAGTAGATCGAAGATAGTAGGTCCGGTCTTCCTATATTGGTA
1 G-GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-C
* * * *
4256539 GGAAGTGGATCGACGAT-GCAGATCTTGTCTTCCCATATTGGTG
1 GGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-C
* * * *
4256582 GCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
1 G-GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGC
* * * **
4256626 GTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATA
1 G-GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG-GC
* * * * *
4256671 GGAAGTGGATCCAAGATA-CAGATCTTGTCTTCCCATACTGGT
1 GGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGC
* * *
4256713 GTTGAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGC
1 G--GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATA-TTGGC
*
4256759 AGAGAAGCAGATCGAAGAT
1 -G-GAAGTAGATCGAAGAT
4256778 TACAGTCTTA
Statistics
Matches: 359, Mismatches: 85, Indels: 27
0.76 0.18 0.06
Matches are distributed among these distances:
42 7 0.02
43 68 0.19
44 192 0.53
45 73 0.20
46 18 0.05
47 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (43 bp):
GGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGC
Found at i:4256640 original size:132 final size:132
Alignment explanation
Indices: 4256286--4256777 Score: 770
Period size: 132 Copynumber: 3.7 Consensus size: 132
4256276 GGAATAGATT
*
4256286 GAAGATTGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTATCT
1 GAAGA-TGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCT
* *
4256351 TCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGG
65 TCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGG
4256416 ATC
130 ATC
4256419 GAAGATGCAGATCTTGTCTTCCCAT-TTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTT
* **
4256483 CATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGA
4256548 TC
131 TC
*
4256550 GACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTT
*
4256615 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGA
66 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGA
4256680 TC
131 TC
* * * ** * ** *
4256682 CAAGATACAGATCTTGTCTTCCCATACTGGTGTTGAAGTAGATCGAAGATTGCAGATCTTGCCTT
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTT
* * *
4256747 CCTGTATTTGGCAGAGAAGCAGATCGAAGAT
66 CATGTA-TTGGC-GTGAAGTAGATCGAAGAT
4256778 TACAGTCTTA
Statistics
Matches: 332, Mismatches: 24, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
131 124 0.37
132 182 0.55
133 10 0.03
134 16 0.05
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (132 bp):
GAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTT
CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGA
TC
Found at i:4260947 original size:96 final size:96
Alignment explanation
Indices: 4260783--4260965 Score: 339
Period size: 96 Copynumber: 1.9 Consensus size: 96
4260773 GAACAAAAAA
* * *
4260783 GCCACCTCATCATTTCTATTATTCATTTAATGGAAAGTGATTAAAACAAAAACAATCGAAAATGT
1 GCCACCTCAGCATTTCTATTATTCATTTAATAGAAAGTGATTAAAACAAAAACAATCAAAAATGT
4260848 TAATAATGAAATTAAAAATTTTTAAATATGT
66 TAATAATGAAATTAAAAATTTTTAAATATGT
4260879 GCCACCTCAGCATTTCTATTATTCATTTAATAGAAAGTGATTAAAACAAAAACAATCAAAAATGT
1 GCCACCTCAGCATTTCTATTATTCATTTAATAGAAAGTGATTAAAACAAAAACAATCAAAAATGT
4260944 TAATAATGAAATTAAAAATTTT
66 TAATAATGAAATTAAAAATTTT
4260966 ATAGTTTGAT
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 84 1.00
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (96 bp):
GCCACCTCAGCATTTCTATTATTCATTTAATAGAAAGTGATTAAAACAAAAACAATCAAAAATGT
TAATAATGAAATTAAAAATTTTTAAATATGT
Found at i:4271666 original size:15 final size:14
Alignment explanation
Indices: 4271648--4271678 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
4271638 TTAATTTATT
4271648 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
4271663 TAATAATAATCTAA
1 TAATAATAATCTAA
4271677 TA
1 TA
4271679 TAAAACCGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:4271690 original size:21 final size:20
Alignment explanation
Indices: 4271665--4271733 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 20
4271655 AATGCTAATA
4271665 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* * **
4271686 GTAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
4271705 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
4271726 ATAATAAT
1 ATAATAAT
4271734 AATCATTATA
Statistics
Matches: 36, Mismatches: 8, Indels: 9
0.68 0.15 0.17
Matches are distributed among these distances:
18 3 0.08
19 10 0.28
20 2 0.06
21 18 0.50
22 3 0.08
ACGTcount: A:0.54, C:0.07, G:0.03, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:4276761 original size:44 final size:45
Alignment explanation
Indices: 4276666--4276799 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
4276656 ACAGGACAGA
* * *
4276666 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAT
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
4276712 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
4276756 ACAGGAATAATTCATGTAAGTCCATGTCAAAGATATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
4276800 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 35 0.47
45 1 0.01
46 38 0.51
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:4280267 original size:15 final size:14
Alignment explanation
Indices: 4280249--4280279 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
4280239 TTAATTTATT
4280249 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
4280264 TAATAATAATCTAA
1 TAATAATAATCTAA
4280278 TA
1 TA
4280280 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:4280290 original size:21 final size:20
Alignment explanation
Indices: 4280266--4280334 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
4280256 AATGCTAATA
4280266 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
4280287 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
4280306 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
4280327 ATAATAAT
1 ATAATAAT
4280335 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:4282767 original size:37 final size:37
Alignment explanation
Indices: 4282726--4282803 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
4282716 ACACATTCTT
* *
4282726 TATTCTCGTCAGATCAATCTCACCTTAATAATATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATATA
4282763 TATTCTCGTCAGATCAATCTCACATAAATAATATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATATA
4282800 TATT
1 TATT
4282804 ACATACCTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.38
Consensus pattern (37 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATATA
Found at i:4286510 original size:58 final size:58
Alignment explanation
Indices: 4286388--4286556 Score: 286
Period size: 58 Copynumber: 2.9 Consensus size: 58
4286378 GTGCCCACTG
* *
4286388 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
*
4286445 ACCGATCTCGCACACATAGTTCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
* *
4286503 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
4286557 TAATCATTCG
Statistics
Matches: 105, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
57 29 0.28
58 76 0.72
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
Found at i:4286544 original size:29 final size:29
Alignment explanation
Indices: 4286395--4286553 Score: 112
Period size: 29 Copynumber: 5.5 Consensus size: 29
4286385 CTGACCGATC
* * *
4286395 TCGCACACATAGTGCTCGGTTGAA-GAAC
1 TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
4286423 TCGCACACACAGTGCCTCAATT-ACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
* *
4286451 CTCGCACACATAGTTCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
4286481 TCGCACACACAGTGCCTCAATT-ACTG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
4286509 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
*
4286539 TTGCACACACAGTGC
1 TCGCACACACAGTGC
4286554 CTCTAATCAT
Statistics
Matches: 98, Mismatches: 24, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
28 27 0.28
29 62 0.63
30 9 0.09
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (29 bp):
TCGCACACACAGTGCTCGGTTAAAGGAAT
Found at i:4286763 original size:27 final size:27
Alignment explanation
Indices: 4286733--4286794 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
4286723 AGCCTGCTAG
4286733 GCACGAAGA-CCCGAATACACATCACC
1 GCACGAAGAGCCCGAATACACATCACC
*
4286759 AGCACGAA-AGCCTGAATACACATCACC
1 -GCACGAAGAGCCCGAATACACATCACC
4286786 GACACGAAG
1 G-CACGAAG
4286795 CCTGCTAGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
26 2 0.06
27 29 0.94
ACGTcount: A:0.40, C:0.34, G:0.18, T:0.08
Consensus pattern (27 bp):
GCACGAAGAGCCCGAATACACATCACC
Found at i:4286827 original size:43 final size:43
Alignment explanation
Indices: 4286773--4286958 Score: 282
Period size: 43 Copynumber: 4.3 Consensus size: 43
4286763 CGAAAGCCTG
* * *
4286773 AATACACATCACCGACACGAAGCCTGCTAGTCACGAAGGCTCA
1 AATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCA
*
4286816 AATACATATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCA
1 AATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCA
* * *
4286859 AATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGACCCG
1 AATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCA
* **
4286902 AATACACATCACCGGTACGAAGCCTGCTAGGCACGAAGGCCTG
1 AATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCA
4286945 AATACACATCACCG
1 AATACACATCACCG
4286959 AGTTTCATGC
Statistics
Matches: 131, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 131 1.00
ACGTcount: A:0.33, C:0.32, G:0.22, T:0.13
Consensus pattern (43 bp):
AATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCA
Found at i:4288407 original size:39 final size:39
Alignment explanation
Indices: 4288353--4288468 Score: 184
Period size: 39 Copynumber: 3.0 Consensus size: 39
4288343 ACACATTCTT
4288353 TATTCTCGTCAGATCAATCTCACATAATTAATATATATA
1 TATTCTCGTCAGATCAATCTCACATAATTAATATATATA
4288392 TATTCTCGTCAGATCAATCTCAC---ATTAATAATATATA
1 TATTCTCGTCAGATCAATCTCACATAATTAAT-ATATATA
* *
4288429 TATTATCGTCAGATCAATCTCACATAAATAATATATATA
1 TATTCTCGTCAGATCAATCTCACATAATTAATATATATA
4288468 T
1 T
4288469 CACATACCTG
Statistics
Matches: 71, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
36 6 0.08
37 29 0.41
39 31 0.44
40 5 0.07
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (39 bp):
TATTCTCGTCAGATCAATCTCACATAATTAATATATATA
Found at i:4288438 original size:37 final size:37
Alignment explanation
Indices: 4288353--4288468 Score: 180
Period size: 37 Copynumber: 3.1 Consensus size: 37
4288343 ACACATTCTT
4288353 TATTCTCGTCAGATCAATCTCACA-TAATTAATATATATA
1 TATTCTCGTCAGATCAATCTCACATTAA-T-A-ATATATA
4288392 TATTCTCGTCAGATCAATCTCACATTAATAATATATA
1 TATTCTCGTCAGATCAATCTCACATTAATAATATATA
* *
4288429 TATTATCGTCAGATCAATCTCACATAAATAATATATA
1 TATTCTCGTCAGATCAATCTCACATTAATAATATATA
4288466 TAT
1 TAT
4288469 CACATACCTG
Statistics
Matches: 74, Mismatches: 2, Indels: 4
0.93 0.03 0.05
Matches are distributed among these distances:
37 45 0.61
38 1 0.01
39 25 0.34
40 3 0.04
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (37 bp):
TATTCTCGTCAGATCAATCTCACATTAATAATATATA
Found at i:4292832 original size:39 final size:37
Alignment explanation
Indices: 4292765--4292857 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
4292755 ACCAGAATGG
* *
4292765 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
4292804 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
4292841 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
4292858 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:4293052 original size:24 final size:26
Alignment explanation
Indices: 4293001--4293061 Score: 76
Period size: 24 Copynumber: 2.4 Consensus size: 26
4292991 ACATATATTC
4293001 TCAATTCAATCACACTTTTTCACACTT
1 TCAATTCAAT-ACACTTTTTCACACTT
4293028 TCAATTCAAT-CA-TTTTTC-CACCTT
1 TCAATTCAATACACTTTTTCACA-CTT
4293052 TCAA-TCAATA
1 TCAATTCAATA
4293062 ATTAATCCGC
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
23 7 0.22
24 13 0.41
25 2 0.06
27 10 0.31
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (26 bp):
TCAATTCAATACACTTTTTCACACTT
Found at i:4293970 original size:16 final size:16
Alignment explanation
Indices: 4293951--4293985 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
4293941 TTCTTTGTTC
4293951 TTTCTATTCTGTTTCT
1 TTTCTATTCTGTTTCT
* *
4293967 TTTCTGTTTTGTTTCT
1 TTTCTATTCTGTTTCT
4293983 TTT
1 TTT
4293986 ATATATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.14, G:0.09, T:0.74
Consensus pattern (16 bp):
TTTCTATTCTGTTTCT
Found at i:4294059 original size:28 final size:29
Alignment explanation
Indices: 4293988--4294051 Score: 76
Period size: 31 Copynumber: 2.2 Consensus size: 29
4293978 TTTCTTTTAT
*
4293988 ATATAATAATATAATATTTATAATGTAATTA
1 ATATAATAATAT-A-CTTTATAATGTAATTA
* *
4294019 ATTTAATAATATACTTTATAAT-TAATTT
1 ATATAATAATATACTTTATAATGTAATTA
4294047 ATATA
1 ATATA
4294052 TTTATATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 9 0.31
29 8 0.28
30 1 0.03
31 11 0.38
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (29 bp):
ATATAATAATATACTTTATAATGTAATTA
Found at i:4297262 original size:35 final size:35
Alignment explanation
Indices: 4297207--4297313 Score: 178
Period size: 35 Copynumber: 3.1 Consensus size: 35
4297197 CTCTTGATAA
*
4297207 TTGTCTTTCATTTGCCTATATAGCCAACGCCTCAT
1 TTGTTTTTCATTTGCCTATATAGCCAACGCCTCAT
* *
4297242 TTGTTTTTCATTTGCATATATAGCTAACGCCTCAT
1 TTGTTTTTCATTTGCCTATATAGCCAACGCCTCAT
*
4297277 TTGTTTTTCATTTGCCTATATAGCCAATGCCTCAT
1 TTGTTTTTCATTTGCCTATATAGCCAACGCCTCAT
4297312 TT
1 TT
4297314 ATTTAGAACT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 66 1.00
ACGTcount: A:0.21, C:0.23, G:0.11, T:0.45
Consensus pattern (35 bp):
TTGTTTTTCATTTGCCTATATAGCCAACGCCTCAT
Found at i:4297510 original size:26 final size:26
Alignment explanation
Indices: 4297474--4297525 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
4297464 CCTTTAGATG
4297474 GCTATTTTCTTTGTAGTAATTGGTCA
1 GCTATTTTCTTTGTAGTAATTGGTCA
4297500 GCTATTTTCTTTGTAGTAATTGGTCA
1 GCTATTTTCTTTGTAGTAATTGGTCA
4297526 TTCACATCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.12, G:0.19, T:0.50
Consensus pattern (26 bp):
GCTATTTTCTTTGTAGTAATTGGTCA
Found at i:4301545 original size:30 final size:31
Alignment explanation
Indices: 4301509--4301583 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 31
4301499 AAAAATGCTT
4301509 AGGTACCAAATTAGGAAAAA-AGTCAAGTTC
1 AGGTACCAAATTAGGAAAAAGAGTCAAGTTC
* *
4301539 AGGTACCAAATTAGGAAAAAGTGTGAAGTTC
1 AGGTACCAAATTAGGAAAAAGAGTCAAGTTC
* *
4301570 AAGTACTAAATTAG
1 AGGTACCAAATTAG
4301584 ACAAAAAAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 20 0.50
31 20 0.50
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (31 bp):
AGGTACCAAATTAGGAAAAAGAGTCAAGTTC
Found at i:4301581 original size:31 final size:30
Alignment explanation
Indices: 4301511--4301615 Score: 105
Period size: 31 Copynumber: 3.6 Consensus size: 30
4301501 AAATGCTTAG
*
4301511 GTACCAAATTAGGAAAAAAGTCAAGTTCAG
1 GTACCAAATTAGGAAAAAAGTCAAGTTCAA
* *
4301541 GTACCAAATTAGGAAAAAGTGTGAAGTTCAA
1 GTACCAAATTAGGAAAAA-AGTCAAGTTCAA
* *
4301572 GTACTAAATTA-GACAAAAA---AACTT-AA
1 GTACCAAATTAGGA-AAAAAGTCAAGTTCAA
4301598 GTACCAAATTA-GAAAAAA
1 GTACCAAATTAGGAAAAAA
4301616 TGACAAATTA
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
25 5 0.08
26 14 0.21
27 4 0.06
30 20 0.30
31 23 0.35
ACGTcount: A:0.51, C:0.11, G:0.16, T:0.21
Consensus pattern (30 bp):
GTACCAAATTAGGAAAAAAGTCAAGTTCAA
Found at i:4303327 original size:17 final size:17
Alignment explanation
Indices: 4303305--4303360 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
4303295 ATTAATTATA
4303305 AAAATAATATTTTAATT
1 AAAATAATATTTTAATT
* *
4303322 AAAATAAATAAATATAA--
1 AAAAT-AAT-ATTTTAATT
4303339 AAAATAATATTTTAATGT
1 AAAATAATATTTTAAT-T
4303357 AAAA
1 AAAA
4303361 AAGAGTAGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 9
0.70 0.09 0.21
Matches are distributed among these distances:
15 5 0.17
16 3 0.10
17 10 0.33
18 7 0.23
19 5 0.17
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (17 bp):
AAAATAATATTTTAATT
Found at i:4303359 original size:20 final size:19
Alignment explanation
Indices: 4303296--4303362 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 19
4303286 TCAGGCGATA
4303296 TTAATTATAAAAATAATATT
1 TTAATTA-AAAAATAATATT
4303316 TTAATT--AAAATAA-A--
1 TTAATTAAAAAATAATATT
*
4303330 TAAATATAAAAAATAATATT
1 TTAAT-TAAAAAATAATATT
4303350 TTAATGTAAAAAA
1 TTAAT-TAAAAAA
4303363 GAGTAGTTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
14 4 0.11
15 1 0.03
16 1 0.03
17 14 0.37
18 1 0.03
20 17 0.45
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.37
Consensus pattern (19 bp):
TTAATTAAAAAATAATATT
Found at i:4304562 original size:13 final size:13
Alignment explanation
Indices: 4304544--4304569 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4304534 TATTAATAAC
4304544 AAATTTAATATTT
1 AAATTTAATATTT
4304557 AAATTTAATATTT
1 AAATTTAATATTT
4304570 TCATACTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
AAATTTAATATTT
Found at i:4314668 original size:19 final size:20
Alignment explanation
Indices: 4314634--4314671 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
4314624 AACGAATTTA
*
4314634 ATAAATAATTAAAAATAAAT
1 ATAAATAATAAAAAATAAAT
4314654 ATAAAT-ATAAAAAATAAA
1 ATAAATAATAAAAAATAAA
4314672 AAATAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
ATAAATAATAAAAAATAAAT
Found at i:4314788 original size:21 final size:23
Alignment explanation
Indices: 4314764--4314805 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
4314754 AAATATTTAA
4314764 TAAA-AATTT-ATAATATAAATG
1 TAAATAATTTAATAATATAAATG
*
4314785 TAAATATTTTAATAATATAAA
1 TAAATAATTTAATAATATAAA
4314806 CATGATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 4 0.22
23 10 0.56
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (23 bp):
TAAATAATTTAATAATATAAATG
Found at i:4315024 original size:21 final size:24
Alignment explanation
Indices: 4314998--4315040 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
4314988 TTGTTTCATT
4314998 AAAAA-TAA-TTT-TTAAAAATTC
1 AAAAATTAATTTTATTAAAAATTC
4315019 AAAAATTAATTTTATTAAAAAT
1 AAAAATTAATTTTATTAAAAAT
4315041 ATTTAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 3 0.16
23 3 0.16
24 8 0.42
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
AAAAATTAATTTTATTAAAAATTC
Found at i:4315040 original size:16 final size:17
Alignment explanation
Indices: 4315019--4315069 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
4315009 TTAAAAATTC
4315019 AAAAA-TTAATTTTATTA
1 AAAAACTTAATTTT-TTA
*
4315036 AAAATATTTAATTTTTT-
1 AAAA-ACTTAATTTTTTA
4315053 AAAAACTTAATCTTTTT
1 AAAAACTTAAT-TTTTT
4315070 TGATAACTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
16 6 0.20
17 13 0.43
18 3 0.10
19 8 0.27
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (17 bp):
AAAAACTTAATTTTTTA
Found at i:4316171 original size:23 final size:23
Alignment explanation
Indices: 4316125--4316171 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
4316115 TTTGATCTTT
* * *
4316125 TAAAAATTACATTTTTACTATAA
1 TAAAAATTAAATTTATAATATAA
*
4316148 TAAAAATTAAATTTATAATTTAA
1 TAAAAATTAAATTTATAATATAA
4316171 T
1 T
4316172 TTGAACTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (23 bp):
TAAAAATTAAATTTATAATATAA
Found at i:4332546 original size:22 final size:21
Alignment explanation
Indices: 4332518--4332562 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
4332508 CCTGAATAAG
*
4332518 TTGTTTTGTTGTTATTTTGTTA
1 TTGTTTTGTTATTATTTT-TTA
4332540 TTGTTTTGTTATTATTTTTTA
1 TTGTTTTGTTATTATTTTTTA
4332561 TT
1 TT
4332563 ATATTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.11, C:0.00, G:0.13, T:0.76
Consensus pattern (21 bp):
TTGTTTTGTTATTATTTTTTA
Found at i:4332563 original size:10 final size:11
Alignment explanation
Indices: 4332521--4332587 Score: 64
Period size: 11 Copynumber: 5.9 Consensus size: 11
4332511 GAATAAGTTG
*
4332521 TTTTGTTGTTA
1 TTTTGTTATTA
*
4332532 TTTTGTTATTG
1 TTTTGTTATTA
4332543 TTTTGTTATTA
1 TTTTGTTATTA
4332554 TTTT-TTATTA
1 TTTTGTTATTA
* *
4332564 TATTATTATACTA
1 TTTTGTTAT--TA
4332577 TTGTTGTTATT
1 TT-TTGTTATT
4332588 TGGATATAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
10 9 0.20
11 27 0.59
12 1 0.02
13 3 0.07
14 6 0.13
ACGTcount: A:0.18, C:0.01, G:0.10, T:0.70
Consensus pattern (11 bp):
TTTTGTTATTA
Found at i:4349688 original size:25 final size:27
Alignment explanation
Indices: 4349659--4349708 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
4349649 TTGACAGAAA
* *
4349659 TAAACCAAGATATA-TTA-AAATAATC
1 TAAACAAACATATATTTATAAATAATC
4349684 TAAACAAACATATATTTATAAATAA
1 TAAACAAACATATATTTATAAATAA
4349709 ATATAACAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 12 0.57
26 3 0.14
27 6 0.29
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.30
Consensus pattern (27 bp):
TAAACAAACATATATTTATAAATAATC
Found at i:4350573 original size:16 final size:17
Alignment explanation
Indices: 4350536--4350574 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
4350526 AGTACTTGAA
*
4350536 TTTTATTATTTGTATTT
1 TTTTAATATTTGTATTT
*
4350553 ATTTAATATTTG-ATTT
1 TTTTAATATTTGTATTT
4350569 TTTTAA
1 TTTTAA
4350575 ACTTACCAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTAATATTTGTATTT
Found at i:4350742 original size:28 final size:27
Alignment explanation
Indices: 4350699--4350759 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
4350689 ATTAATAATT
*
4350699 TATTTTTAGTTAAAAATAAAAAATATA
1 TATTTTTAGTTAAAAAGAAAAAATATA
* *
4350726 TATTTTTA-TTATTAAAAGAATATATATA
1 TATTTTTAGTTA--AAAAGAAAAAATATA
4350754 TATTTT
1 TATTTT
4350760 AACATTAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 3 0.10
27 8 0.28
28 18 0.62
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (27 bp):
TATTTTTAGTTAAAAAGAAAAAATATA
Found at i:4353836 original size:13 final size:13
Alignment explanation
Indices: 4353815--4353859 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
4353805 TAAAAAATTC
*
4353815 TATTTTTTTTGTT
1 TATTATTTTTGTT
4353828 TATTATTTTTG-T
1 TATTATTTTTGTT
*
4353840 TATT-TTTAT-TT
1 TATTATTTTTGTT
4353851 TATTATTTT
1 TATTATTTT
4353860 ACTATATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
11 9 0.33
12 8 0.30
13 10 0.37
ACGTcount: A:0.16, C:0.00, G:0.04, T:0.80
Consensus pattern (13 bp):
TATTATTTTTGTT
Found at i:4356470 original size:53 final size:52
Alignment explanation
Indices: 4356347--4356491 Score: 175
Period size: 52 Copynumber: 2.8 Consensus size: 52
4356337 AACATGTGAC
* * * *
4356347 ATGTGCTCCCGTATAAGACTATAGCT-AGACTATGGCATCGGTGTGATGAGAT
1 ATGTGCTTCCGTATAAGACAATAGCTGGGA-TATGGCATCGGTGAGATGAGAT
* * **
4356399 ATGTGCTTCCGTATAAGACCATAGCTGGGTTATGGCATCGGTGAGATTTGATT
1 ATGTGCTTCCGTATAAGACAATAGCTGGGATATGGCATCGGTGAGATGAGA-T
* *
4356452 ATGTGCTTCTGTATAAGACAATATCTGGGATATGGCATCG
1 ATGTGCTTCCGTATAAGACAATAGCTGGGATATGGCATCG
4356492 ATGATATATG
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
52 42 0.52
53 38 0.47
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (52 bp):
ATGTGCTTCCGTATAAGACAATAGCTGGGATATGGCATCGGTGAGATGAGAT
Found at i:4356523 original size:47 final size:47
Alignment explanation
Indices: 4356447--4356580 Score: 139
Period size: 47 Copynumber: 2.9 Consensus size: 47
4356437 CGGTGAGATT
* * * *
4356447 TGAT-TATGTGCTTCTGTATAAGACAATATCTGGGATATGGCATCGA
1 TGATATATGTGCTTTTGTGTAAGACCATATCTGGGATATGGCATCAA
*
4356493 TGATATATGTGCTTTTGTGTAAGACCATATCTAGGATATGGCATCAA
1 TGATATATGTGCTTTTGTGTAAGACCATATCTGGGATATGGCATCAA
* * * ** *
4356540 TG-TGATTTGTG-ATTCGTGTAAGACCATGGCTGGGCTATGGC
1 TGAT-ATATGTGCTTTTGTGTAAGACCATATCTGGGATATGGC
4356581 TTCTGTGTGT
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
46 29 0.39
47 45 0.61
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.35
Consensus pattern (47 bp):
TGATATATGTGCTTTTGTGTAAGACCATATCTGGGATATGGCATCAA
Found at i:4363950 original size:16 final size:16
Alignment explanation
Indices: 4363929--4363960 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4363919 CCCTTAGTCA
*
4363929 TGATTATTTAATTAAT
1 TGATTAGTTAATTAAT
4363945 TGATTAGTTAATTAAT
1 TGATTAGTTAATTAAT
4363961 CACCTCTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (16 bp):
TGATTAGTTAATTAAT
Found at i:4370995 original size:31 final size:31
Alignment explanation
Indices: 4370960--4371021 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
4370950 CTAATGTTTA
4370960 TAATGTTTACAACCATAAAAGGGGAAAAGAG
1 TAATGTTTACAACCATAAAAGGGGAAAAGAG
4370991 TAATGTTTACAACCATAAAAGGGGAAAAGAG
1 TAATGTTTACAACCATAAAAGGGGAAAAGAG
4371022 AAGAATAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.10, G:0.23, T:0.19
Consensus pattern (31 bp):
TAATGTTTACAACCATAAAAGGGGAAAAGAG
Done.