Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 133 of 352
Found at i:42979782 original size:21 final size:21
Alignment explanation
Indices: 42979707--42979782 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
42979697 TGGTCTCGAG
* *
42979707 GTGGAGGTGAATGACCTTGTT
1 GTGGAGGTAAACGACCTTGTT
42979728 GTGGAGGTAAAC-ATCCTTGTT
1 GTGGAGGTAAACGA-CCTTGTT
*** **
42979749 GTGGTTTTAAACGGGCTTGTT
1 GTGGAGGTAAACGACCTTGTT
*
42979770 GTGGAGGTGAACG
1 GTGGAGGTAAACG
42979783 TCCTCATTGT
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
20 1 0.02
21 41 0.98
ACGTcount: A:0.20, C:0.11, G:0.37, T:0.33
Consensus pattern (21 bp):
GTGGAGGTAAACGACCTTGTT
Found at i:42980360 original size:12 final size:11
Alignment explanation
Indices: 42980303--42980392 Score: 70
Period size: 11 Copynumber: 8.6 Consensus size: 11
42980293 AAAATTGAAT
42980303 TTTTTTTTCACC
1 TTTTTTTTCA-C
42980315 TTTTCTTTT---
1 TTTT-TTTTCAC
*
42980324 TTTTTTTT-GC
1 TTTTTTTTCAC
42980334 TTTTTTTTCAC
1 TTTTTTTTCAC
42980345 TTTTTTTTCGA-
1 TTTTTTTTC-AC
42980356 TTTTTTTTCA-
1 TTTTTTTTCAC
**
42980366 --TTTTTGAAC
1 TTTTTTTTCAC
42980375 TTTTTTTTCAC
1 TTTTTTTTCAC
42980386 TTTTTTT
1 TTTTTTT
42980393 GATATTTTGA
Statistics
Matches: 65, Mismatches: 5, Indels: 17
0.75 0.06 0.20
Matches are distributed among these distances:
8 10 0.15
9 4 0.06
10 9 0.14
11 33 0.51
12 5 0.08
13 4 0.06
ACGTcount: A:0.08, C:0.13, G:0.03, T:0.76
Consensus pattern (11 bp):
TTTTTTTTCAC
Found at i:42980407 original size:31 final size:30
Alignment explanation
Indices: 42980343--42980403 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
42980333 CTTTTTTTTC
*
42980343 ACTTTTTTTTCGATTTTTTTTCATTTTTGA
1 ACTTTTTTTTCGACTTTTTTTCATTTTTGA
*
42980373 ACTTTTTTTTC-ACTTTTTTTGATATTTTGA
1 ACTTTTTTTTCGACTTTTTTTCAT-TTTTGA
42980403 A
1 A
42980404 ACTTCTAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 10 0.36
30 18 0.64
ACGTcount: A:0.16, C:0.10, G:0.07, T:0.67
Consensus pattern (30 bp):
ACTTTTTTTTCGACTTTTTTTCATTTTTGA
Found at i:42981604 original size:77 final size:77
Alignment explanation
Indices: 42981510--42981655 Score: 179
Period size: 77 Copynumber: 1.9 Consensus size: 77
42981500 AATGCAAGTC
* * * * * *
42981510 TTAAATGATGCTAATGTATTGATGTAAAGCATTAACTAAAGACACATTCAATAAACAAGAA-ACA
1 TTAAAAGATGCTAATGTATTAATGCAAAACATTAAATAAAGACACATTCAACAAACAA-AACACA
42981574 TAATGCACATTTT
65 TAATGCACATTTT
** *
42981587 TTAAAAGATG-TAGATGTATTAATGCAAAACATTAAATAAAGATGCATTTAACAAACAAAACACA
1 TTAAAAGATGCTA-ATGTATTAATGCAAAACATTAAATAAAGACACATTCAACAAACAAAACACA
42981651 TAATG
65 TAATG
42981656 AAGCAGATCA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
76 4 0.07
77 54 0.93
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.28
Consensus pattern (77 bp):
TTAAAAGATGCTAATGTATTAATGCAAAACATTAAATAAAGACACATTCAACAAACAAAACACAT
AATGCACATTTT
Found at i:42990095 original size:55 final size:54
Alignment explanation
Indices: 42989955--42990159 Score: 227
Period size: 55 Copynumber: 3.8 Consensus size: 54
42989945 CTTTTGAAAT
* * * *
42989955 TTACCATTTCCATGTCTCGACATGGTCTTACATGGTATCTTTGCCTTAT-GAAC
1 TTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAAC
* * * *
42990008 TCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAAC
1 TTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AAC
** *
42990063 TTTTCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTAGA-AACC
1 TTACCAATGCCATGTCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAA-C
* *
42990117 TTACCAATTGCCATGTCTAGGCATGGTCTTACATGGTATCCTT
1 TTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTA-CCTT
42990160 AAACCCTAAT
Statistics
Matches: 127, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
53 43 0.34
54 7 0.06
55 74 0.58
56 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
TTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAAC
Found at i:42991779 original size:29 final size:29
Alignment explanation
Indices: 42991722--42991784 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
42991712 AAGTCTACAT
* * *
42991722 ACATGCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATCAGACCCAAATC
* *
42991751 ACATTCATATGGCCCATCCGACCCGAATC
1 ACATTCATATGGCCCATCAGACCCAAATC
42991780 A-ATTC
1 ACATTC
42991785 CAAGCCATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 4 0.14
29 25 0.86
ACGTcount: A:0.30, C:0.33, G:0.14, T:0.22
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGACCCAAATC
Found at i:42995012 original size:16 final size:16
Alignment explanation
Indices: 42994991--42995021 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
42994981 ATATATTTTC
*
42994991 ATTTGCATCATATATA
1 ATTTGCATCACATATA
42995007 ATTTGCATCACATAT
1 ATTTGCATCACATAT
42995022 CAAATAGTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTGCATCACATATA
Found at i:42995235 original size:43 final size:43
Alignment explanation
Indices: 42995183--42995429 Score: 320
Period size: 43 Copynumber: 5.8 Consensus size: 43
42995173 CAATGCCAAA
* * * *
42995183 GTCCAAGACATGGTCTTACATGTAATAACATATCGATGCCATT
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACT
* *
42995226 GTCCCAGACACGGTCTTACACG-AATCAAATA-CGATGCCGA-T
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCC-ACT
*
42995267 GTCCCAGACATGGTCTTACACGTAATCACATATCGATTCCACT
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACT
* * *
42995310 ATCCCAGACGTGGTCTTACACGTAATCACATATCAATGCCACT
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACT
* * *
42995353 ATCCCAGACAGGGTCTTACACGTAATCACATATCGATTCCACT
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACT
* * *
42995396 GTCCTAGACGTGGTCTTACATGTAATCACATATC
1 GTCCCAGACATGGTCTTACACGTAATCACATATC
42995430 AAATACTTAC
Statistics
Matches: 179, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
41 29 0.16
42 17 0.09
43 133 0.74
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACT
Found at i:42995316 original size:84 final size:86
Alignment explanation
Indices: 42995173--42996262 Score: 665
Period size: 86 Copynumber: 12.5 Consensus size: 86
42995163 ACATATCGTA
** * * * * * **
42995173 CAATGCCAAAGTCCAAGACATGGTCTTACATGTAATAACATATCGATGCCATTGTCCCAGACACG
1 CAATGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATTCCACTGTCCCAGACGTG
42995238 GTCTTACACG-AATCAAATA-
66 GTCTTACACGTAATCAAATAT
* *
42995257 CGATGCCGA-TGTCCCAGACATGGTCTTACACGTAATCACATATCGATTCCACTATCCCAGACGT
1 CAATGCC-ACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATTCCACTGTCCCAGACGT
*
42995321 GGTCTTACACGTAATCACATAT
65 GGTCTTACACGTAATCAAATAT
* * *
42995343 CAATGCCACTATCCCAGACAGGGTCTTACACGTAATCACATATCGATTCCACTGTCCTAGACGTG
1 CAATGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATTCCACTGTCCCAGACGTG
* *
42995408 GTCTTACATGTAATCACATAT
66 GTCTTACACGTAATCAAATAT
* * * *** * * *
42995429 CAAATACTTACCTTATTTTA-AAATAGG-CAATT-TA-GCT-ATCACATACCTGA-T-CACT-T-
1 C-AATGC-CA-C-TGTCCCAGACAT-GGTC--TTACACG-TAATCACATATC-GATTCCACTGTC
* * * * *
42995485 -TAG-CTTGAT-TACACATTCGATAAT-AACTTAT
57 CCAGACGTGGTCT-TACA--CG-TAATCAA-ATAT
* * * * * ** **
42995516 TATTGCC-CGTTGAACCATTCA-AAATTGAATAGGATACTGGGATAATCACACATATC-ATACAA
1 CAATGCCAC--TG-TCC---CAGACA-TG-GT--CTTAC-ACG-TAAT--CACATATCGAT----
* * * *
42995578 TGCCAATGTCCAAGATGTGGTCTTACATC-TAATCACATAT
48 T-CCACTGTCCCAGACGTGGTCTTACA-CGTAATCAAATAT
* * * * *
42995618 CGATGCCACTGTCCCAGACAGGGTCTTACACG-AATCAAATA-CGATGCCGA-TGTCCCAGACAT
1 CAATGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATTCC-ACTGTCCCAGACGT
42995680 GGTCTTACACGTAATCACAA-AT
65 GGTCTTACACGTAATCA-AATAT
** * * * * * * **
42995702 TGATTCCACTGTCCAAGACGT-GTCTTACACATAATCACATATCAATGCCACTGTCCCAGACAAG
1 CAATGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATTCCACTGTCCCAGACGTG
*
42995766 GTCTTACACGTAATCACATAT
66 GTCTTACACGTAATCAAATAT
* * * *
42995787 CGACGCCAAC-GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACTATCCCAGACAG
1 CAATGCC-ACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATTCCACTGTCCCAGAC-G
*
42995851 -GGTCTTACACGTAATCACATAT
64 TGGTCTTACACGTAATCAAATAT
* * * * * *
42995873 CGACGCCAATGTCCCAGACGTGGTCTTACACGTATTCACATATCGATGCCACTGTCCCAGACGTG
1 CAATGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATTCCACTGTCCCAGACGTG
* * *
42995938 GTCTTACATGTGATCACATAT
66 GTCTTACACGTAATCAAATAT
* * * * *
42995959 CGATGCCACTGTCCCAGACAGGGTCTTACACGTAATCACATATTGATGCCAAC-GTCCCAAACGT
1 CAATGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATTCC-ACTGTCCCAGACGT
* *
42996023 GGTCTTACAAGTAATCACATAT
65 GGTCTTACACGTAATCAAATAT
* * * ** *
42996045 CGATGCCACTGTCCCAGACAGGGTCTTACATGTAATCACATATCGATGACAATGTCCCAGACGTG
1 CAATGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATTCCACTGTCCCAGACGTG
* *
42996110 GTCTTACATGTAATCACATAT
66 GTCTTACACGTAATCAAATAT
* * * * * ** *
42996131 CGATGCCAAC-GTCCCAGACGTGGTCTTACAAGTAATCACATATCGGTGCCAAAGTCCCAGATGT
1 CAATGCC-ACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATTCCACTGTCCCAGACGT
**
42996195 GGTCTTACACGTAATCACGTAT
65 GGTCTTACACGTAATCAAATAT
* * * *
42996217 CGATTCCACTGTCCCAGAC-TAGGTCTTACGCATAATCACATATCGA
1 CAATGCCACTGTCCCAGACAT-GGTCTTACACGTAATCACATATCGA
42996263 AAATCCTATG
Statistics
Matches: 812, Mismatches: 127, Indels: 132
0.76 0.12 0.12
Matches are distributed among these distances:
83 12 0.01
84 126 0.16
85 70 0.09
86 483 0.59
87 16 0.02
88 11 0.01
89 23 0.03
90 11 0.01
91 5 0.01
93 3 0.00
94 6 0.01
96 8 0.01
97 3 0.00
98 2 0.00
99 1 0.00
100 2 0.00
101 5 0.01
102 12 0.01
103 2 0.00
104 4 0.00
105 6 0.01
106 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (86 bp):
CAATGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATCGATTCCACTGTCCCAGACGTG
GTCTTACACGTAATCAAATAT
Found at i:42995631 original size:43 final size:43
Alignment explanation
Indices: 42995577--42996262 Score: 858
Period size: 43 Copynumber: 16.0 Consensus size: 43
42995567 ATATCATACA
* * *
42995577 ATGCCAATGTCCAAGATGTGGTCTTACATC-TAATCACATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACA-CGTAATCACATATCG
*
42995620 ATGCCACTGTCCCAGACAG-GGTCTTACACG-AATCAAATA-CG
1 ATGCCACTGTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* * *
42995661 ATGCCGA-TGTCCCAGACATGGTCTTACACGTAATCACAAATTG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
42995704 ATTCCACTGTCCAAGACGT-GTCTTACACATAATCACATATCA
1 ATGCCACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
**
42995746 ATGCCACTGTCCCAGACAAGGTCTTACACGTAATCACATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
42995789 ACGCCAAC-GTCCCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
42995832 ATGCCACTATCCCAGACAG-GGTCTTACACGTAATCACATATCG
1 ATGCCACTGTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* * *
42995875 ACGCCAATGTCCCAGACGTGGTCTTACACGTATTCACATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
42995918 ATGCCACTGTCCCAGACGTGGTCTTACATGTGATCACATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
42995961 ATGCCACTGTCCCAGACAG-GGTCTTACACGTAATCACATATTG
1 ATGCCACTGTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* *
42996004 ATGCCAAC-GTCCCAAACGTGGTCTTACAAGTAATCACATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
42996047 ATGCCACTGTCCCAGACAG-GGTCTTACATGTAATCACATATCG
1 ATGCCACTGTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* * *
42996090 ATGACAATGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
42996133 ATGCCAAC-GTCCCAGACGTGGTCTTACAAGTAATCACATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* ** * *
42996176 GTGCCAAAGTCCCAGATGTGGTCTTACACGTAATCACGTATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
42996219 ATTCCACTGTCCCAGAC-TAGGTCTTACGCATAATCACATATCG
1 ATGCCACTGTCCCAGACGT-GGTCTTACACGTAATCACATATCG
42996262 A
1 A
42996263 AAATCCTATG
Statistics
Matches: 561, Mismatches: 61, Indels: 42
0.84 0.09 0.06
Matches are distributed among these distances:
41 28 0.05
42 61 0.11
43 464 0.83
44 8 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:42996901 original size:25 final size:25
Alignment explanation
Indices: 42996867--42996916 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
42996857 AATCCAAAAC
42996867 ATATCTTTCATAATTCATCATCTAA
1 ATATCTTTCATAATTCATCATCTAA
42996892 ATATCTTTCATAATTCATCATCTAA
1 ATATCTTTCATAATTCATCATCTAA
42996917 CATCACAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.20, G:0.00, T:0.44
Consensus pattern (25 bp):
ATATCTTTCATAATTCATCATCTAA
Found at i:42999989 original size:20 final size:20
Alignment explanation
Indices: 42999964--43000001 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
42999954 CATTTTGGCC
*
42999964 CTAAATTAGGCTGTTACAGT
1 CTAAATCAGGCTGTTACAGT
*
42999984 CTAAATCGGGCTGTTACA
1 CTAAATCAGGCTGTTACA
43000002 CATACTAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (20 bp):
CTAAATCAGGCTGTTACAGT
Found at i:43006304 original size:43 final size:43
Alignment explanation
Indices: 43006238--43006324 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
43006228 AAATCATACA
**
43006238 ATGCCAACGTCCCAGACGTGGTCTTACAT-GTAGCCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTAC-TCGTAAACACATATCG
43006281 ATGCC-ACTGTCCCAGACAG-GGTCTTACTCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACTCGTAAACACATATCG
43006324 A
1 A
43006325 AATCACAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 3 0.08
43 35 0.90
44 1 0.03
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACTCGTAAACACATATCG
Found at i:43018691 original size:23 final size:22
Alignment explanation
Indices: 43018665--43018709 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
43018655 ATTTTTTAGG
*
43018665 TCATTTAGG-TTTTTATAGAAGAT
1 TCATTAAGGATTTTT-T-GAAGAT
43018688 TCATTAAGGATTTTTTGAAGAT
1 TCATTAAGGATTTTTTGAAGAT
43018710 ATCTAAACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 9 0.45
24 5 0.25
ACGTcount: A:0.31, C:0.04, G:0.18, T:0.47
Consensus pattern (22 bp):
TCATTAAGGATTTTTTGAAGAT
Found at i:43024649 original size:20 final size:20
Alignment explanation
Indices: 43024624--43024686 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
43024614 CACATACGTG
43024624 CCCTTGTTTGTACTTCGGTA
1 CCCTTGTTTGTACTTCGGTA
** * * ** *
43024644 CCCTTGAATGCACATATGTT
1 CCCTTGTTTGTACTTCGGTA
*
43024664 CCCTTGTTAGTACTTCGGTA
1 CCCTTGTTTGTACTTCGGTA
43024684 CCC
1 CCC
43024687 CTGAAGGCAT
Statistics
Matches: 28, Mismatches: 15, Indels: 0
0.65 0.35 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.16, C:0.29, G:0.17, T:0.38
Consensus pattern (20 bp):
CCCTTGTTTGTACTTCGGTA
Found at i:43024658 original size:40 final size:39
Alignment explanation
Indices: 43024568--43024691 Score: 140
Period size: 40 Copynumber: 3.1 Consensus size: 39
43024558 TATTAATGTA
* * * *
43024568 TGAATGCACATTCGTGCCCCTATTTATACTTCGGTATCCC
1 TGAATGCACATACGTGCCCTTGTTTGTACTTCGGTA-CCC
* *
43024608 TAAATCCACATACGTGCCCTTGTTTGTACTTCGGTACCC
1 TGAATGCACATACGTGCCCTTGTTTGTACTTCGGTACCC
* * *
43024647 TTGAATGCACATATGTTCCCTTGTTAGTACTTCGGTACCCC
1 -TGAATGCACATACGTGCCCTTGTTTGTACTTCGGTA-CCC
43024688 TGAA
1 TGAA
43024692 GGCATATTAT
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
39 3 0.04
40 65 0.92
41 3 0.04
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (39 bp):
TGAATGCACATACGTGCCCTTGTTTGTACTTCGGTACCC
Found at i:43029944 original size:19 final size:19
Alignment explanation
Indices: 43029920--43029956 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
43029910 AAATGTATAG
*
43029920 TACGCCTAGTTTGTCTAAA
1 TACGCCTACTTTGTCTAAA
*
43029939 TACGCCTACTTTTTCTAA
1 TACGCCTACTTTGTCTAA
43029957 GCACTGTGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.41
Consensus pattern (19 bp):
TACGCCTACTTTGTCTAAA
Found at i:43037225 original size:63 final size:64
Alignment explanation
Indices: 43037147--43037330 Score: 164
Period size: 66 Copynumber: 2.9 Consensus size: 64
43037137 AGACATTATG
** *
43037147 ATGTAGCTAGGTCGCATGGGTGATGCT-ATGTGTACACCATGTAGACAAGAGAGCTACGGGAT-T
1 ATGTAGCTAGGTCGCATGGGTG-TGCTCATGTGTACACCATGTAGACAAGAGAGCTACGAAATAA
* * *
43037210 ATGTAGCTAGGTCGCATGCGTG-GCTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAAA
1 ATGTAGCTAGGTCGCATGGGTGTGCT-CA--TG-TGTACACCATGTAGACAAGAGAGCTACGAAA
43037274 TAA
62 TAA
* * * * *
43037277 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGT-GTGCTCATGTGTACACCATGTAG-ACAAGAGAGCT
43037331 GAACTATCTG
Statistics
Matches: 98, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
61 3 0.03
62 1 0.01
63 42 0.43
64 1 0.01
65 2 0.02
66 43 0.44
67 4 0.04
68 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGTGCTCATGTGTACACCATGTAGACAAGAGAGCTACGAAATAA
Found at i:43038850 original size:227 final size:227
Alignment explanation
Indices: 43038455--43038867 Score: 781
Period size: 227 Copynumber: 1.8 Consensus size: 227
43038445 GCTTGTTGGG
* *
43038455 TATGGAGTTGAATTGAAATGTTTTAGGCAAACATGTTATTTTACGTATCTGAATTGTGGTATTTT
1 TATGGAGTTGAATTGAAATGTTTCAGGCAAACATGTTATTTTACGTATCGGAATTGTGGTATTTT
*
43038520 ATAAAGATATGATCTAGTTTTAAATATGAATGCTTGATGATTAAGCTGAAGATATTTTGTAAGAT
66 ATAAAGATATGATCTAGTTTTAAATATGAATGCTTGATAATTAAGCTGAAGATATTTTGTAAGAT
43038585 GATAATCCTGGTATAAATATATAAGTGGTACTATAATAAACAAGGTAAAATAAGTAAGGACTACT
131 GATAATCCTGGTATAAATATATAAGTGGTACTATAATAAACAAGGTAAAATAAGTAAGGACTACT
43038650 TGGTCGCTAATGGAATATTAAAGAATAACAGA
196 TGGTCGCTAATGGAATATTAAAGAATAACAGA
43038682 TATGGAGTTGAATTGAAATGTTTCAGGCAAACATGTTATTTTACGTATCGGAATTGTGGTATTTT
1 TATGGAGTTGAATTGAAATGTTTCAGGCAAACATGTTATTTTACGTATCGGAATTGTGGTATTTT
43038747 ATAAAGATATGATCTAGTTTTAAATATGAATGCTTGATAATTAAGCTGAAGATATTTTGTAAGAT
66 ATAAAGATATGATCTAGTTTTAAATATGAATGCTTGATAATTAAGCTGAAGATATTTTGTAAGAT
* *
43038812 GATAATCTTGGTATAAATATATAAGTGGTACTATAATAAACAAGGTAAAATGAGTA
131 GATAATCCTGGTATAAATATATAAGTGGTACTATAATAAACAAGGTAAAATAAGTA
43038868 TGAGAGACAC
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
227 181 1.00
ACGTcount: A:0.38, C:0.07, G:0.19, T:0.36
Consensus pattern (227 bp):
TATGGAGTTGAATTGAAATGTTTCAGGCAAACATGTTATTTTACGTATCGGAATTGTGGTATTTT
ATAAAGATATGATCTAGTTTTAAATATGAATGCTTGATAATTAAGCTGAAGATATTTTGTAAGAT
GATAATCCTGGTATAAATATATAAGTGGTACTATAATAAACAAGGTAAAATAAGTAAGGACTACT
TGGTCGCTAATGGAATATTAAAGAATAACAGA
Found at i:43041351 original size:11 final size:11
Alignment explanation
Indices: 43041335--43041363 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
43041325 TAGATCCATA
43041335 ATCACAAGGTC
1 ATCACAAGGTC
43041346 ATCACAAGGTC
1 ATCACAAGGTC
43041357 ATCACAA
1 ATCACAA
43041364 AATCATTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.41, C:0.28, G:0.14, T:0.17
Consensus pattern (11 bp):
ATCACAAGGTC
Found at i:43041709 original size:48 final size:48
Alignment explanation
Indices: 43041575--43041751 Score: 180
Period size: 48 Copynumber: 3.7 Consensus size: 48
43041565 AGGGTAAATC
* * * * * *
43041575 GCCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCACATGTCGAG
1 GCCGATGTCATGTTCCAGACATGGTCTTACACTGGCTCTCATCTCGAG
* * *
43041623 GCCGATGTCATG-TCCTAGACATGGTCTTACACTAGCTCTCGTCTCGAT
1 GCCGATGTCATGTTCC-AGACATGGTCTTACACTGGCTCTCATCTCGAG
* * *
43041671 GCCGATGTCATGTTTCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGTCATGTTCCAGACATGGTCTTACACTGGCTCTCAT-CTCGAG
* *
43041719 GCTGATG-CTATGTTCCAAACATGGTCTTACACT
1 GCCGATGTC-ATGTTCCAGACATGGTCTTACACT
43041752 AGCACACATA
Statistics
Matches: 107, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
47 3 0.03
48 101 0.94
49 3 0.03
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (48 bp):
GCCGATGTCATGTTCCAGACATGGTCTTACACTGGCTCTCATCTCGAG
Found at i:43042250 original size:70 final size:70
Alignment explanation
Indices: 43042149--43042520 Score: 602
Period size: 70 Copynumber: 5.3 Consensus size: 70
43042139 TTCCTTGATC
* * *
43042149 TATAACAACA-CATTTTAATTAGCTAAACACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
*
43042213 TACAA
66 TACAG
* * *
43042218 TATTACAGCAGCATATTAGTTAGCTAAGCACCATGAATTTTTCCTAATTTGGACAGCCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
*
43042283 TAAAG
66 TACAG
*
43042288 TATAACAGCAGAATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
43042353 TACAG
66 TACAG
* * *
43042358 TATAACAGCAGTATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTTGCCAGCCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
*
43042423 TATAG
66 TACAG
* *
43042428 TATAACAGCAGCATATTCATTAGCTAAGCACCATGAATTTGTCCAAATTTGGACAGCCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
43042493 TACAG
66 TACAG
43042498 TATAACAGCAGCATATTAATTAG
1 TATAACAGCAGCATATTAATTAG
43042521 TAATAAACTA
Statistics
Matches: 278, Mismatches: 24, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
69 8 0.03
70 270 0.97
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (70 bp):
TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
TACAG
Found at i:43044378 original size:16 final size:17
Alignment explanation
Indices: 43044357--43044391 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
43044347 ATTGTTCAAA
*
43044357 TTATTTAAGA-ACAATT
1 TTATTTAAAACACAATT
43044373 TTATTTAAAACACAATT
1 TTATTTAAAACACAATT
43044390 TT
1 TT
43044392 GAAGCCCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.46
Consensus pattern (17 bp):
TTATTTAAAACACAATT
Found at i:43044762 original size:38 final size:38
Alignment explanation
Indices: 43044711--43044786 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
43044701 GCAAAGTAAG
*
43044711 TACTAAAACGAAAGTCCAAATCCAAAAGAAAACTAGCC
1 TACTAAAACGAAAGTCAAAATCCAAAAGAAAACTAGCC
43044749 TACTAAAACGAAAGTCAAAATCCAAAAGAAAACTAGCC
1 TACTAAAACGAAAGTCAAAATCCAAAAGAAAACTAGCC
43044787 AAAAAGTTCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.54, C:0.22, G:0.11, T:0.13
Consensus pattern (38 bp):
TACTAAAACGAAAGTCAAAATCCAAAAGAAAACTAGCC
Found at i:43051080 original size:47 final size:47
Alignment explanation
Indices: 43051017--43051774 Score: 631
Period size: 47 Copynumber: 16.1 Consensus size: 47
43051007 GAAATGATAG
*
43051017 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
43051064 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
43051111 TAAGGCCTAATAGCCGATGTGATGAATGCGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
43051158 TAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
43051205 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
43051252 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
43051299 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
43051346 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * ** * * *
43051393 TAAGTCCCGAAGGGCATAAATGTGAT-AA-GTCCCG-AAGGGCATTATAAACT-TGTT
1 TAAG-GCCTAATGGC--CGATGTGATGAATGT---GAAAGTG---TATATA-TGTG-A
* * * **** ** * *
43051447 TTAGTTGCTCATAA--G-CTAT-TGATTAAACCCATACTTGAATTCTAAATCGTGA
1 TAAG--GC-C-TAATGGCCGATGTGATGAATGTGA-AAGTG---TATATAT-GTGA
** ** * *
43051499 TATTG--TAA--G-TTATGAGTATTCGAATATGAAA-TG---ATA---G-
1 TAAGGCCTAATGGCCGATGTG-A-T-GAATGTGAAAGTGTATATATGTGA
*
43051536 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
43051583 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
43051630 TAAGGCGTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
43051677 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAATGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
43051724 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
43051771 TAAG
1 TAAG
43051775 TCCCGAAGGG
Statistics
Matches: 584, Mismatches: 90, Indels: 74
0.78 0.12 0.10
Matches are distributed among these distances:
37 3 0.01
38 1 0.00
39 12 0.02
40 3 0.01
41 2 0.00
42 6 0.01
43 2 0.00
46 8 0.01
47 478 0.82
48 12 0.02
49 3 0.01
50 15 0.03
51 6 0.01
52 14 0.02
53 9 0.02
54 4 0.01
55 3 0.01
56 1 0.00
57 2 0.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:43051409 original size:25 final size:25
Alignment explanation
Indices: 43051381--43051434 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
43051371 ATGTGAAAGT
43051381 GCATAAATGTGATAAGTCCCGAAGG
1 GCATAAATGTGATAAGTCCCGAAGG
43051406 GCATAAATGTGATAAGTCCCGAAGG
1 GCATAAATGTGATAAGTCCCGAAGG
43051431 GCAT
1 GCAT
43051435 TATAAACTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (25 bp):
GCATAAATGTGATAAGTCCCGAAGG
Found at i:43051721 original size:25 final size:25
Alignment explanation
Indices: 43051646--43051723 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
43051636 GTAATGGCCG
*
43051646 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAATGTATAT
** ** *
43051671 ATGTGAT-AA-G-GCCTAATGGCT-G
1 ATGTGATGAATGTG-AAAATGTATAT
43051693 ATGTGATGAATGTGAAAATGTATAT
1 ATGTGATGAATGTGAAAATGTATAT
43051718 ATGTGA
1 ATGTGA
43051724 CGGGGCCGAG
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 8 0.22
23 7 0.19
24 8 0.22
25 14 0.38
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAATGTATAT
Found at i:43053727 original size:29 final size:29
Alignment explanation
Indices: 43053685--43053756 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
43053675 TGTGAGATTT
* *
43053685 GCACTAGGTGTGCGAACTTGAAA-TGCATG
1 GCACTAAGTGTGCG-ACTTGAAAGTACATG
* *
43053714 GCACTAAGTGTGCGAGTTTAAAGTACATG
1 GCACTAAGTGTGCGACTTGAAAGTACATG
43053743 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
43053757 CGGTTGATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 6 0.16
29 32 0.84
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGACTTGAAAGTACATG
Found at i:43059583 original size:28 final size:28
Alignment explanation
Indices: 43059545--43059651 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
43059535 GAATCATTCG
* *
43059545 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
43059573 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
43059601 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
43059629 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
43059652 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:43066853 original size:14 final size:14
Alignment explanation
Indices: 43066828--43066876 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
43066818 GTTTCGACTA
43066828 GAAGACAAAAAAAAG
1 GAAGA-AAAAAAAAG
*
43066843 GAAGAAAAAAAATG
1 GAAGAAAAAAAAAG
* * *
43066857 GAGGAAAAAGAGAG
1 GAAGAAAAAAAAAG
43066871 GAAGAA
1 GAAGAA
43066877 GAAATCGACA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 23 0.82
15 5 0.18
ACGTcount: A:0.67, C:0.02, G:0.29, T:0.02
Consensus pattern (14 bp):
GAAGAAAAAAAAAG
Found at i:43068212 original size:44 final size:45
Alignment explanation
Indices: 43068028--43068213 Score: 193
Period size: 44 Copynumber: 4.2 Consensus size: 45
43068018 AAGAGGAAGA
** *
43068028 ATTGGTGGCTTCGTCCACAACCTACATGGCAACTTGTCTGCAAA-
1 ATTGGTGGCTTTATCCACAACCTACATGGCAACTTGTCTACAAAT
* * * * *
43068072 ATTGGTTG-TTTATCCGCAACCTACATGGTAGCTTGTCTTCAAAT
1 ATTGGTGGCTTTATCCACAACCTACATGGCAACTTGTCTACAAAT
* * *
43068116 ATTGGTGG-TTTATCCACAACTTACATGGAAAC-TGTCTACGAAT
1 ATTGGTGGCTTTATCCACAACCTACATGGCAACTTGTCTACAAAT
* * * * *
43068159 ATTGTTGGCTTTGTCCATAACCTACATGGCAGCTTGTCTACGAAT
1 ATTGGTGGCTTTATCCACAACCTACATGGCAACTTGTCTACAAAT
43068204 -TTGGTGGCTT
1 ATTGGTGGCTT
43068214 CAACCACATA
Statistics
Matches: 118, Mismatches: 21, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
43 45 0.38
44 62 0.53
45 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (45 bp):
ATTGGTGGCTTTATCCACAACCTACATGGCAACTTGTCTACAAAT
Found at i:43070331 original size:40 final size:40
Alignment explanation
Indices: 43070230--43070454 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
43070220 TATTCGAATG
* *
43070230 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * * *
43070271 ATAACCGGACGAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
43070311 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* **
43070351 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCAACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
43070391 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
43070431 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
43070455 CTTGCGCAAG
Statistics
Matches: 155, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.81
41 28 0.18
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:43078462 original size:40 final size:40
Alignment explanation
Indices: 43078361--43078581 Score: 246
Period size: 40 Copynumber: 5.5 Consensus size: 40
43078351 TATTCGAATG
* * *
43078361 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * * * *
43078402 ATAACCGGACGAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
* *
43078442 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* *
43078482 ATATTCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * *
43078522 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
43078562 ACATCCGGGCTAAGACCCGA
1 ATATCCGGGCTAAGACCCGA
43078582 TGGCCTTGCG
Statistics
Matches: 149, Mismatches: 29, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 120 0.81
41 28 0.19
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:43078571 original size:80 final size:80
Alignment explanation
Indices: 43078361--43078621 Score: 267
Period size: 80 Copynumber: 3.3 Consensus size: 80
43078351 TATTCGAATG
* * * * *
43078361 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACGAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
43078426 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * * * *
43078442 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATTCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
43078507 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
43078522 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGATGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * * *
43078587 TT-GCGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
43078601 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
43078622 ATTACTTGAG
Statistics
Matches: 148, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
78 14 0.09
79 13 0.09
80 90 0.61
81 31 0.21
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:43078580 original size:120 final size:121
Alignment explanation
Indices: 43078361--43078581 Score: 277
Period size: 120 Copynumber: 1.8 Consensus size: 121
43078351 TATTCGAATG
** * *
43078361 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACGAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACGAAGATCCGAAGGC
* * * *
43078426 ATTCGTGCGAGTTGCTATATCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * * *
43078482 ATATTCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACGAAGAT-CCGAAGG
* *
43078545 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGA
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGA
43078582 TGGCCTTGCG
Statistics
Matches: 84, Mismatches: 14, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
119 3 0.04
120 51 0.61
121 30 0.36
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACGAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:43084112 original size:57 final size:56
Alignment explanation
Indices: 43084000--43084113 Score: 131
Period size: 57 Copynumber: 2.0 Consensus size: 56
43083990 CATGTTTTCA
* * * * *
43084000 ACATATGCTCAGAAGAGCTTAATCAGGATTACCCGTTCGGGCTAATTCCTATCTGT
1 ACATATGCTCAGAAGAGCTTAATCAGGATTACCAGTCCAGGCAAAATCCTATCTGT
* * *
43084056 ACATATGCTCA-AGAGGGTTTATATCAGGATTACCAGTCCAGGCAAAATCCTTTCTGT
1 ACATATGCTCAGA-AGAGCTTA-ATCAGGATTACCAGTCCAGGCAAAATCCTATCTGT
43084113 A
1 A
43084114 ATGAGATCAA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
55 1 0.02
56 17 0.35
57 30 0.62
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (56 bp):
ACATATGCTCAGAAGAGCTTAATCAGGATTACCAGTCCAGGCAAAATCCTATCTGT
Found at i:43086279 original size:46 final size:45
Alignment explanation
Indices: 43086147--43086361 Score: 138
Period size: 46 Copynumber: 4.6 Consensus size: 45
43086137 TGTGTGAGCT
* *
43086147 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAT-TATGA-A-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-G--ACATCGA-GACATAGCC
* *
43086193 AGTGTAAGACCGA-GTCTGGGACATGGCATCGACATTGAGACGAGT-GCT
1 AGTGTAAGA-C-ATGTCTGGGACAT-GCATCGACATCGAGAC-A-TAGCC
* * * *
43086241 AGTGTAAGACTTGTCTAGGACATGCATCGGCCTCGAGACATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACATCGAGACAT-AGCC
* * ** *
43086287 AGTGTGAGACATGTCTGGGACATGCATCGA-ATACAAGATGT-GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACAT-CGAGACATAGCC
*
43086331 AGTGTAAGACCATGTTTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
43086362 GCACCTGACC
Statistics
Matches: 135, Mismatches: 20, Indels: 28
0.74 0.11 0.15
Matches are distributed among these distances:
44 11 0.08
45 21 0.16
46 62 0.46
47 24 0.18
48 17 0.13
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATCGAGACATAGCC
Found at i:43087366 original size:28 final size:28
Alignment explanation
Indices: 43087326--43087392 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
43087316 GACATAAGCT
43087326 AGGACACGGGCGTGTCATGGCCGTGTGA
1 AGGACACGGGCGTGTCATGGCCGTGTGA
*
43087354 AGGACACGGGCGTGTCATGGTCGTGTGA
1 AGGACACGGGCGTGTCATGGCCGTGTGA
43087382 AGGACACGGGC
1 AGGACACGGGC
43087393 CAAGGACACG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.19, C:0.21, G:0.43, T:0.16
Consensus pattern (28 bp):
AGGACACGGGCGTGTCATGGCCGTGTGA
Found at i:43108101 original size:29 final size:29
Alignment explanation
Indices: 43108062--43108144 Score: 148
Period size: 29 Copynumber: 2.9 Consensus size: 29
43108052 GCATGAATAT
43108062 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGATTTGGGCCTAATGGGCCACATA
*
43108091 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCACATA
*
43108120 AATGTGAATTGGGCCTAATGGGCCA
1 AATGTGATTTGGGCCTAATGGGCCA
43108145 TGTGAATATA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCACATA
Found at i:43108145 original size:29 final size:29
Alignment explanation
Indices: 43108058--43108176 Score: 143
Period size: 29 Copynumber: 4.2 Consensus size: 29
43108048 GTGAGCATGA
*
43108058 ATAT-AATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGAATTGGGCCTAATGGGCC
* *
43108086 ACATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGAATTGGGCCTAATGGGCC
43108115 ATATAAATGTGAATTGGGCCTAATGGGCC
1 ATATAAATGTGAATTGGGCCTAATGGGCC
* * * * * *
43108144 ATGTGAATAT-AATTGGGTCTAGTGGACC
1 ATATAAATGTGAATTGGGCCTAATGGGCC
43108172 ATATA
1 ATATA
43108177 CAGGTATGTG
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 21 0.27
29 58 0.73
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGAATTGGGCCTAATGGGCC
Found at i:43109596 original size:19 final size:19
Alignment explanation
Indices: 43109572--43109610 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
43109562 GATTATTCAG
43109572 AAAATACAACTTGAAAGTT
1 AAAATACAACTTGAAAGTT
*
43109591 AAAATACACCTTGAAAGTT
1 AAAATACAACTTGAAAGTT
43109610 A
1 A
43109611 TGTCTCTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.13, G:0.10, T:0.26
Consensus pattern (19 bp):
AAAATACAACTTGAAAGTT
Found at i:43117110 original size:13 final size:14
Alignment explanation
Indices: 43117092--43117124 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
43117082 ATAATATTCA
43117092 TTTTTC-TTTAAAT
1 TTTTTCTTTTAAAT
43117105 TTTTTCTTTTAAAT
1 TTTTTCTTTTAAAT
*
43117119 TATTTC
1 TTTTTC
43117125 ACATAAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTTCTTTTAAAT
Found at i:43125023 original size:21 final size:21
Alignment explanation
Indices: 43124977--43125024 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
43124967 TTATATTCTC
*
43124977 ATATTGTTATTAATTAATTTA
1 ATATTTTTATTAATTAATTTA
43124998 ATATTTTTA-TAATATAA-TTA
1 ATATTTTTATTAAT-TAATTTA
43125018 ATTATTT
1 A-TATTT
43125025 CAAATAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
ATATTTTTATTAATTAATTTA
Found at i:43125323 original size:21 final size:21
Alignment explanation
Indices: 43125298--43125342 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
43125288 ACCTTTTTGT
43125298 TTTTAAAATATTTTTTAATGA
1 TTTTAAAATATTTTTTAATGA
43125319 TTTTAAAATATTTTTTAATGA
1 TTTTAAAATATTTTTTAATGA
43125340 TTT
1 TTT
43125343 ATTCAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (21 bp):
TTTTAAAATATTTTTTAATGA
Found at i:43129573 original size:15 final size:15
Alignment explanation
Indices: 43129531--43129577 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
43129521 CACAATAACG
*
43129531 TAAATGACTAAAATA
1 TAAATAACTAAAATA
** *
43129546 T-AATATTTCAAATA
1 TAAATAACTAAAATA
43129560 TAAATAACTAAAATA
1 TAAATAACTAAAATA
43129575 TAA
1 TAA
43129578 CATGAGAGAA
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (15 bp):
TAAATAACTAAAATA
Found at i:43130778 original size:19 final size:19
Alignment explanation
Indices: 43130748--43130793 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
43130738 AGTAAAATGA
43130748 TTTCTGGAAAATGATTTACT
1 TTTCT-GAAAATGATTTACT
*
43130768 TTTCTGAAAATGATTTATT
1 TTTCTGAAAATGATTTACT
43130787 TTTCTGA
1 TTTCTGA
43130794 TGTTTGGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 20 0.80
20 5 0.20
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.50
Consensus pattern (19 bp):
TTTCTGAAAATGATTTACT
Found at i:43133926 original size:16 final size:16
Alignment explanation
Indices: 43133898--43133931 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
43133888 TTTTATAACC
43133898 TATAAAAATATAATATT
1 TATAAAAATATAAT-TT
43133915 TATAAAAA-ATAATTT
1 TATAAAAATATAATTT
43133930 TA
1 TA
43133932 AAATATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 5 0.29
17 8 0.47
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TATAAAAATATAATTT
Found at i:43138506 original size:29 final size:29
Alignment explanation
Indices: 43138460--43138546 Score: 165
Period size: 29 Copynumber: 3.0 Consensus size: 29
43138450 TGGTAGTTGA
43138460 CTATGTTCCAAGACAATATCAAGTGGCTT
1 CTATGTTCCAAGACAATATCAAGTGGCTT
*
43138489 CTATGTTCCAAGATAATATCAAGTGGCTT
1 CTATGTTCCAAGACAATATCAAGTGGCTT
43138518 CTATGTTCCAAGACAATATCAAGTGGCTT
1 CTATGTTCCAAGACAATATCAAGTGGCTT
43138547 ACATACTCAC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (29 bp):
CTATGTTCCAAGACAATATCAAGTGGCTT
Found at i:43138705 original size:22 final size:21
Alignment explanation
Indices: 43138656--43138713 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
43138646 ACGTTAACGG
* *
43138656 ACAAATATATAAATAAAAATAA
1 ACAAATATTTATAT-AAAATAA
43138678 ACAAATATTTATATAAAATAAA
1 ACAAATATTTATATAAAAT-AA
*
43138700 ATAAATATTTATAT
1 ACAAATATTTATAT
43138714 TTAAAATATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
21 5 0.16
22 27 0.84
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (21 bp):
ACAAATATTTATATAAAATAA
Found at i:43139140 original size:167 final size:167
Alignment explanation
Indices: 43138864--43139198 Score: 670
Period size: 167 Copynumber: 2.0 Consensus size: 167
43138854 TTGGAGAAAC
43138864 ATTGGTCGGCTATCTCCCAGAATACAATAACAAGATGATCAATGCAATAACACCTCTGTAGTGAT
1 ATTGGTCGGCTATCTCCCAGAATACAATAACAAGATGATCAATGCAATAACACCTCTGTAGTGAT
43138929 CAACGAACAAACATTGCCTTCTTCTACCACAGAAACGTTTGAAAAATATGGAGAGAAAAAGAAGA
66 CAACGAACAAACATTGCCTTCTTCTACCACAGAAACGTTTGAAAAATATGGAGAGAAAAAGAAGA
43138994 ATTTTCGAGAGCAAATAAGTTTGATGTGAGTATCCCA
131 ATTTTCGAGAGCAAATAAGTTTGATGTGAGTATCCCA
43139031 ATTGGTCGGCTATCTCCCAGAATACAATAACAAGATGATCAATGCAATAACACCTCTGTAGTGAT
1 ATTGGTCGGCTATCTCCCAGAATACAATAACAAGATGATCAATGCAATAACACCTCTGTAGTGAT
43139096 CAACGAACAAACATTGCCTTCTTCTACCACAGAAACGTTTGAAAAATATGGAGAGAAAAAGAAGA
66 CAACGAACAAACATTGCCTTCTTCTACCACAGAAACGTTTGAAAAATATGGAGAGAAAAAGAAGA
43139161 ATTTTCGAGAGCAAATAAGTTTGATGTGAGTATCCCA
131 ATTTTCGAGAGCAAATAAGTTTGATGTGAGTATCCCA
43139198 A
1 A
43139199 AGAATTCTTT
Statistics
Matches: 168, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
167 168 1.00
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (167 bp):
ATTGGTCGGCTATCTCCCAGAATACAATAACAAGATGATCAATGCAATAACACCTCTGTAGTGAT
CAACGAACAAACATTGCCTTCTTCTACCACAGAAACGTTTGAAAAATATGGAGAGAAAAAGAAGA
ATTTTCGAGAGCAAATAAGTTTGATGTGAGTATCCCA
Found at i:43144353 original size:27 final size:29
Alignment explanation
Indices: 43144291--43144353 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 29
43144281 AAAGAAAGCC
*
43144291 AAAT-TATATATGAATAATTTTAAAGAAAA
1 AAATATATATATGAATAAGTTT-AAGAAAA
*
43144320 AATATATATATAT-AATAAGTTT-AGAAGA
1 AA-ATATATATATGAATAAGTTTAAGAAAA
43144348 AAATAT
1 AAATAT
43144354 TTACATAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
27 4 0.13
28 7 0.23
29 2 0.07
30 10 0.33
31 7 0.23
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (29 bp):
AAATATATATATGAATAAGTTTAAGAAAA
Found at i:43146204 original size:167 final size:171
Alignment explanation
Indices: 43145976--43146395 Score: 446
Period size: 177 Copynumber: 2.4 Consensus size: 171
43145966 TAATTTTGAG
* * * * *
43145976 CTTGCTC-CATTGCAACTTCAGAGTGATAAGGCTAGTGGCTTAAATCTGTTCCATTGCCGATACA
1 CTTGCTCTC-TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACA
*
43146040 TGGAGATAAGATTCGCCATCTTCGATCCTGCT-TAG-GA-AAATA-AG-A-TCTGCAATCTTCAG
65 TGGAGATAAGATT-GCCATCTTCGAT-CTGCTCTAGCGATAAATAGAGAATTCTACAATCTTCAG
*
43146099 TCTACTTCCTTGCAACCTT-AGGAAAATAAGACTTGTATCTTCAA-
128 TCTACTTCC-TGCAA-CTTCAGGAAAATAAGACCTGTATCTTCAAC
* * *
43146143 CTTGCTCTCTTGCTACCTCAGAGAGGTAAGGCTAGTGGCTAAAATCTACTCTATTGCCGATACAT
1 CTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACAT
* * * * * * *
43146208 GGAGGTAAGACTTGCCATTTTTGATCTGCTCCATAGTCGATACATAGAGATAATTTTTATAATTT
66 GGAGATAAGA-TTGCCATCTTCGATCTGCT-C-TAG-CGATAAATAGAG--AA-TTCTACAATCT
* * *
43146273 TCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTTAAC
124 TCAGTCTACTTCCTGCAACTTCAGGAAAATAAGACCTGTATCTTCAAC
* * * *
43146321 CTT-CTCTCTTGCTACCTCAGAAAGATAAGGCTGGTGGCTAAAGTCTGCTCCATAGCCGATACAT
1 CTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACAT
43146385 GGAGATAAGAT
66 GGAGATAAGAT
43146396 CTGTGATTTT
Statistics
Matches: 209, Mismatches: 28, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
166 5 0.02
167 74 0.35
168 3 0.01
169 3 0.01
171 2 0.01
172 4 0.02
173 2 0.01
176 5 0.02
177 90 0.43
178 21 0.10
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (171 bp):
CTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACAT
GGAGATAAGATTGCCATCTTCGATCTGCTCTAGCGATAAATAGAGAATTCTACAATCTTCAGTCT
ACTTCCTGCAACTTCAGGAAAATAAGACCTGTATCTTCAAC
Found at i:43146469 original size:132 final size:132
Alignment explanation
Indices: 43146231--43146526 Score: 457
Period size: 132 Copynumber: 2.2 Consensus size: 132
43146221 GCCATTTTTG
* ** *
43146231 ATCTGCTCCATAGTCGATACATAGAGATAATTTTTATAATTTTCAGTCTGCTTCCTGCAACTTCA
1 ATCTGCTCCATAGCCGATACATAGAGATAAGATCTATAATTTTCAGTCTGCTTCCTGCAACTTCA
* *
43146296 GGAAGATAAGACCTGTATCTTTAACCTTCTCTCTTGCTACCTCAGAAAGATAAGGCTGGTGGCTA
66 GGAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAAAGATAAGGCTGGTGGCTA
43146361 AA
131 AA
* * * * *
43146363 GTCTGCTCCATAGCCGATACATGGAGATAAGATCTGTGATTTTCAGTCTGCTTCTTGCAACTTCA
1 ATCTGCTCCATAGCCGATACATAGAGATAAGATCTATAATTTTCAGTCTGCTTCCTGCAACTTCA
* * * *
43146428 GGAAGATAAGACTTGTATCTTCAGCCTGCTCTTTTGCTACCTCAGAGAGATAAGGCTGGTGGCTA
66 GGAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAAAGATAAGGCTGGTGGCTA
43146493 AA
131 AA
43146495 ATCTGCTCCATAGCCGATACATAGAGATAAGA
1 ATCTGCTCCATAGCCGATACATAGAGATAAGA
43146527 CCCGCCAATT
Statistics
Matches: 147, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
132 147 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (132 bp):
ATCTGCTCCATAGCCGATACATAGAGATAAGATCTATAATTTTCAGTCTGCTTCCTGCAACTTCA
GGAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAAAGATAAGGCTGGTGGCTA
AA
Found at i:43146484 original size:309 final size:310
Alignment explanation
Indices: 43146079--43146703 Score: 903
Period size: 309 Copynumber: 2.0 Consensus size: 310
43146069 GCTTAGGAAA
43146079 ATAAGATCTGCAATCTTCAGTCTACTTCCTTGCAACCTTAGGAAAATAAGACTTGTATCTTCAAC
1 ATAAGATCTGCAATCTTCAGTCTACTTCCTTGCAACCTTAGGAAAATAAGACTTGTATCTTCAAC
* * * * *
43146144 TTGCTCTCTTGCTACCTCAGAGAGGTAAGGCTAGTGGCTAAAATCTACTCTATTGCCGATACATG
66 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACATA
* ** * * * ** *
43146209 GAGGTAAGACTTGCCATTTTTGATCTGCTCCATAGTCGATACATAGAGATAATTTTTATAATTTT
131 GAGATAAGACCCGCCAATTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATTTATAATTCT
* *
43146274 CAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTTAACCTTCTCTCTTGCTACCTC
196 CAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTC
* * *
43146339 AGAAAGATAAGGCTGGTGGCTAAAGTCTGCTCCATAGCCGATACATGGAG
261 AGAAAGATAAGGCTAGTGGCTAAAATCTGCTCCATAGCCGATACATAGAG
** * * * *
43146389 ATAAGATCTGTGATTTTCAGTCTGCTT-CTTGCAA-CTTCAGGAAGATAAGACTTGTATCTTCAG
1 ATAAGATCTGCAATCTTCAGTCTACTTCCTTGCAACCTT-AGGAAAATAAGACTTGTATCTTCAA
* * *
43146452 CCTGCTCTTTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACAT
65 CCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACAT
** * *
43146517 AGAGATAAGACCCGCCAATTTCGATCTGCTTTATAGCCGATACATGGAGATAAGATTTGTAATTC
130 AGAGATAAGACCCGCCAATTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATTTATAATTC
* *
43146582 TCAGTCTGCTTCCTGCAACTTTAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCT
195 TCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCT
* *
43146647 CAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATAGTCGATACATAGAG
260 CAGAAAGATAAGGCTAGTGGCTAAAATCTGCTCCATAGCCGATACATAGAG
43146698 ATAAGA
1 ATAAGA
43146704 CCCGCCAATT
Statistics
Matches: 278, Mismatches: 36, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
308 3 0.01
309 252 0.91
310 23 0.08
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (310 bp):
ATAAGATCTGCAATCTTCAGTCTACTTCCTTGCAACCTTAGGAAAATAAGACTTGTATCTTCAAC
CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACATA
GAGATAAGACCCGCCAATTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATTTATAATTCT
CAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTC
AGAAAGATAAGGCTAGTGGCTAAAATCTGCTCCATAGCCGATACATAGAG
Found at i:43146669 original size:177 final size:177
Alignment explanation
Indices: 43146364--43146927 Score: 975
Period size: 177 Copynumber: 3.2 Consensus size: 177
43146354 GTGGCTAAAG
* * * *
43146364 TCTGCTCCATAGCCGATACATGGAGATAAGATCTGTGATTTTCAGTCTGCTTCTTGCAACTTCAG
1 TCTGCTCTATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCATGCAACTTCAG
* *
43146429 GAAGATAAGACTTGTATCTTCAGCCTGCTCTTTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
66 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
43146494 AATCTGCTCCATAGCCGATACATAGAGATAAGACCCGCCAATTTCGA
131 AATCTGCTCCATAGCCGATACATAGAGATAAGACCCGCCAATTTCGA
* * * *
43146541 TCTGCTTTATAGCCGATACATGGAGATAAGATTTGTAATTCTCAGTCTGCTTCCTGCAACTTTAG
1 TCTGCTCTATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCATGCAACTTCAG
*
43146606 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
66 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
*
43146671 AATCTGCTCCATAGTCGATACATAGAGATAAGACCCGCCAATTTCGA
131 AATCTGCTCCATAGCCGATACATAGAGATAAGACCCGCCAATTTCGA
*
43146718 TCTGCTCTATAGCCGATACATGGAAATAAGATCTGTAATTCTCAGTCTGCTTCATGCAACTTCAG
1 TCTGCTCTATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCATGCAACTTCAG
43146783 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
66 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
* * *
43146848 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGA
131 AATCTGCTCCATAGCCGATACATAGAGATAAGACCCGCCAATTTCGA
*
43146895 TCTGCTCCATAGCCGATACATGGAGATAAGATC
1 TCTGCTCTATAGCCGATACATGGAGATAAGATC
43146928 CGCAATTTTC
Statistics
Matches: 364, Mismatches: 23, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
177 364 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (177 bp):
TCTGCTCTATAGCCGATACATGGAGATAAGATCTGTAATTCTCAGTCTGCTTCATGCAACTTCAG
GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
AATCTGCTCCATAGCCGATACATAGAGATAAGACCCGCCAATTTCGA
Found at i:43146936 original size:45 final size:45
Alignment explanation
Indices: 43146849--43146937 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
43146839 GGTGGCTAAA
*
43146849 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCG
43146894 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TCCGCAATTTTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACT-CGCAATTTTC
43146938 ACCGATGTCG
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
44 1 0.02
45 41 0.98
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCAATTTTCG
Found at i:43147076 original size:64 final size:64
Alignment explanation
Indices: 43146996--43147123 Score: 229
Period size: 64 Copynumber: 2.0 Consensus size: 64
43146986 TCATATATCT
43146996 ATGCTTATGCCAAATAATTAGGATACTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATACTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* * *
43147060 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAATTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATACTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
43147124 TTATGAATGA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATACTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:43154890 original size:93 final size:93
Alignment explanation
Indices: 43154778--43154949 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
43154768 GCCCATAAGT
* * * *
43154778 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTAGCATCCATAAGTGAACTCGGACTCAACTCA
43154842 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
43154871 GAACTCGGACTCAACTCAACGAGTTCGGACATTAGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTAGCATCCATAAGTGAACTCGGACTCAACTCAA
*
43154936 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
43154950 CAAACATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTAGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:43154940 original size:46 final size:45
Alignment explanation
Indices: 43154770--43154945 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
43154760 TGTAACCCGC
* *
43154770 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGAC-TTAGCAT
* * * *
43154816 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CTTAGCAT
* ***
43154862 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTAGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGAC-TTAGCAT
43154909 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
43154946 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
45 2 0.02
46 69 0.65
47 34 0.32
48 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTTAGCAT
Found at i:43164868 original size:28 final size:28
Alignment explanation
Indices: 43164837--43164891 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
43164827 TGTAAGAAAT
* * *
43164837 TATTAATAATATTATTTAAATTATAATA
1 TATTAATAATAATATTCAAACTATAATA
* *
43164865 TATTGATATTAATATTCAAACTATAAT
1 TATTAATAATAATATTCAAACTATAAT
43164892 GAATTTTTAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (28 bp):
TATTAATAATAATATTCAAACTATAATA
Found at i:43168724 original size:4 final size:4
Alignment explanation
Indices: 43168715--43168740 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
43168705 TATGTTCATA
43168715 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
43168741 TGAAATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:43174389 original size:13 final size:13
Alignment explanation
Indices: 43174367--43174425 Score: 52
Period size: 13 Copynumber: 4.5 Consensus size: 13
43174357 GAGACCTTAA
43174367 AAAAAGATCAAAAT
1 AAAAA-ATCAAAAT
43174381 AAAAAATCAAAAT
1 AAAAAATCAAAAT
43174394 CAAACAAA--AAAA-
1 -AAA-AAATCAAAAT
*
43174406 AGAAAAATTAAAAT
1 A-AAAAATCAAAAT
43174420 AAAAAA
1 AAAAAA
43174426 GAAGAAAGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
11 4 0.10
12 2 0.05
13 21 0.54
14 9 0.23
15 3 0.08
ACGTcount: A:0.78, C:0.07, G:0.03, T:0.12
Consensus pattern (13 bp):
AAAAAATCAAAAT
Found at i:43174397 original size:19 final size:19
Alignment explanation
Indices: 43174368--43174428 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
43174358 AGACCTTAAA
*
43174368 AAAAGATCAAAATAAAAAAT
1 AAAA-ATCAAAATAAAAAAG
* *
43174388 CAAAATCAAACAAAAAAAAG
1 AAAAATCAAA-ATAAAAAAG
*
43174408 AAAAATTAAAATAAAAAAG
1 AAAAATCAAAATAAAAAAG
43174427 AA
1 AA
43174429 GAAAGAAAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
19 16 0.47
20 18 0.53
ACGTcount: A:0.77, C:0.07, G:0.05, T:0.11
Consensus pattern (19 bp):
AAAAATCAAAATAAAAAAG
Found at i:43174412 original size:26 final size:26
Alignment explanation
Indices: 43174382--43174437 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
43174372 GATCAAAATA
43174382 AAAAATCAAAATCAAACAAA-AA-AAAG
1 AAAAATCAAAAT-AAA-AAAGAAGAAAG
*
43174408 AAAAATTAAAATAAAAAAGAAGAAAG
1 AAAAATCAAAATAAAAAAGAAGAAAG
43174434 AAAA
1 AAAA
43174438 GGAGAGGCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 3 0.11
25 5 0.19
26 19 0.70
ACGTcount: A:0.79, C:0.05, G:0.07, T:0.09
Consensus pattern (26 bp):
AAAAATCAAAATAAAAAAGAAGAAAG
Found at i:43174437 original size:19 final size:19
Alignment explanation
Indices: 43174376--43174437 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 19
43174366 AAAAAAGATC
** *
43174376 AAAATAAAAAATCAAAATC
1 AAAATAAAAAAGAAAAATG
* *
43174395 AAACAAAAAAAAGAAAAATT
1 AAA-ATAAAAAAGAAAAATG
43174415 AAAATAAAAAAGAAGAAA-G
1 AAAATAAAAAAGAA-AAATG
43174434 AAAA
1 AAAA
43174438 GGAGAGGCCA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 17 0.49
20 18 0.51
ACGTcount: A:0.79, C:0.05, G:0.06, T:0.10
Consensus pattern (19 bp):
AAAATAAAAAAGAAAAATG
Found at i:43176883 original size:190 final size:182
Alignment explanation
Indices: 43176277--43177157 Score: 870
Period size: 178 Copynumber: 4.9 Consensus size: 182
43176267 ATCTGTTCTA
* ** * *
43176277 CTGCAA-TCTCAGGGGGATAAAATCTTCAA-TCTTCAGTCTGTTTCTTTG-TCACCTCTGGAAGA
1 CTGCAACT-TCAGGGAGATAAAATCTTCAATTCTT-AGTCTACTTCCTTGCT-ACCTCAGGAAGA
* ** * * * * * * *
43176339 TAAGACTACAATCACCAACCTGCTCGCTTGCTACCTCAGAGAGATAAG-GTCGATAGTTAAAATC
63 TAAGACT-CATTCTTCAACCTGCTCTCCTGCTACTTCAGAGAGATAAGACTTGGT-GGTAAAATC
* * * * * * * *
43176403 TACTCCATTACCGATTCATGGAGATAAGATTCGCCATC-CT-C---GACCTGTTCCA
126 TGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTATGCGAAGATCTGCTCCG
** * * *
43176455 CTGCTGCTT-AAGGAGATAAGATCTTCAA-TCTTCAGTCTACTTCCTTGCTACCTCAGGAAAATA
1 CTGCAACTTCAGGGAGATAAAATCTTCAATTCTT-AGTCTACTTCCTTGCTACCTCAGGAAGATA
* * * * ** *
43176518 AGACTACCA-TCTTCAACTTGCTCTCTTGCTTCTTCAGGGAGATAAGGTTTAGTGGTAAAATCTG
65 AGACT--CATTCTTCAACCTGCTCTCCTGCTACTTCAGAGAGATAAGACTTGGTGGTAAAATCTG
* * *
43176582 TTCCACTGCTGATACATGGAGATAAGATTCACCATC--TGCGAAGATCTGCTCCG
128 CTCCATTGCCGATACATGGAGATAAGATTCACCATCTATGCGAAGATCTGCTCCG
* * * *
43176635 CTGCAACTTCAGGGAGATAAAATCTCCAAATCTCT-GTCTGCTTCCTTACTACCTCAGGAAGATA
1 CTGCAACTTCAGGGAGATAAAATCTTCAATTCT-TAGTCTACTTCCTTGCTACCTCAGGAAGATA
* * *
43176699 AGACTCATACTTCAACCTGCTCTCCTACTACTTCAGAGAGATAAGACCTGGTGGTAAAATCTGCT
65 AGACTCATTCTTCAACCTGCTCTCCTGCTACTTCAGAGAGATAAGACTTGGTGGTAAAATCTGCT
*
43176764 CCATTGCCGATACATGGAGATGAGATTCACCATCTGTGAAGATTTGCGAAGATCTGCTCCG
130 CCATTGCCGATACATGGAGATAAGATTCACCATC--T----A--TGCGAAGATCTGCTCCG
* *
43176825 CTGCAACTTCAGGGAGATAAAATCTTCAATTCTTAGTATGCTTCCTTGCTACCTCAGGAAGATAA
1 CTGCAACTTCAGGGAGATAAAATCTTCAATTCTTAGTCTACTTCCTTGCTACCTCAGGAAGATAA
* * * *
43176890 GACTTATTCTTCAGCCTGCTCT-CTCGCTACCTCAGAGAGATAA-AGCTTGGTGGTGAAATCTGC
66 GACTCATTCTTCAACCTGCTCTCCT-GCTACTTCAGAGAGATAAGA-CTTGGTGGTAAAATCTGC
43176953 TCCATTGCCGATACATGGAGATAAGATT--CCATCTA--CGAAGATCTGCTCCG
129 TCCATTGCCGATACATGGAGATAAGATTCACCATCTATGCGAAGATCTGCTCCG
* * * * *
43177003 CTACAACTTCAGGGAAATAAAATCTTCAATTCTCAGTCTACTTCCTTGCTACTTCAAGAAGATAA
1 CTGCAACTTCAGGGAGATAAAATCTTCAATTCTTAGTCTACTTCCTTGCTACCTCAGGAAGATAA
* * * *
43177068 GACTCATTCTTCAACCTGCTCTCTTGCTACCTT-AGAGAGATAAGGCTTGGTAGTAAAATATGCT
66 GACTCATTCTTCAACCTGCTCTCCTGCTA-CTTCAGAGAGATAAGACTTGGTGGTAAAATCTGCT
*
43177132 CCATTACCGATACATGGAGATAAGAT
130 CCATTGCCGATACATGGAGATAAGAT
43177158 CTTCAATCTT
Statistics
Matches: 592, Mismatches: 83, Indels: 56
0.81 0.11 0.08
Matches are distributed among these distances:
176 1 0.00
177 119 0.20
178 158 0.27
179 6 0.01
180 92 0.16
181 47 0.08
182 4 0.01
183 1 0.00
186 1 0.00
188 5 0.01
189 4 0.01
190 154 0.26
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (182 bp):
CTGCAACTTCAGGGAGATAAAATCTTCAATTCTTAGTCTACTTCCTTGCTACCTCAGGAAGATAA
GACTCATTCTTCAACCTGCTCTCCTGCTACTTCAGAGAGATAAGACTTGGTGGTAAAATCTGCTC
CATTGCCGATACATGGAGATAAGATTCACCATCTATGCGAAGATCTGCTCCG
Found at i:43177066 original size:368 final size:369
Alignment explanation
Indices: 43176466--43177157 Score: 978
Period size: 368 Copynumber: 1.9 Consensus size: 369
43176456 TGCTGCTTAA
* *
43176466 GGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAAATAAGACTACCATCTT
1 GGAGATAAAATCTTCAATCTTCAGTATACTTCCTTGCTACCTCAGGAAAATAAGACTA-CATCTT
* * * * * * * * *
43176531 CAACTTGCTCTCTTGCTTCTTCAGGGAGATAAGGTTTAGTGGTAAAATCTGTTCCACTGCTGATA
65 CAACCTGCTCTCTCGCTACCTCAGAGAGATAAAGCTTAGTGGTAAAATCTGCTCCACTGCCGATA
* * *
43176596 CATGGAGATAAGATTCACCATCTGCGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTC
130 CATGGAGATAAGATT-ACCATCTACGAAGATCTGCTCCGCTACAACTTCAGGGAAATAAAATCTC
* * *
43176661 CAAATCTCTGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTCATACTTCAACCTGCTCTCCTA
194 CAAATCTCAGTCTACTTCCTTACTACCTCAAGAAGATAAGACTCATACTTCAACCTGCTCTCCTA
* * * *
43176726 CTA-CTTCAGAGAGATAAGACCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATGAGAT
259 CTACCTT-AGAGAGATAAGACCTGGTAGTAAAATATGCTCCATTACCGATACATGGAGATAAGAT
43176790 TCACCATCTGTGAAGATTTGCGAAGATCTGCTCCGCTGCAACTTCAG
323 TCACCATCTGTGAAGATTTGCGAAGATCTGCTCCGCTGCAACTTCAG
* * *
43176837 GGAGATAAAATCTTCAATTCTT-AGTATGCTTCCTTGCTACCTCAGGAAGATAAGACTTA-TTCT
1 GGAGATAAAATCTTCAA-TCTTCAGTATACTTCCTTGCTACCTCAGGAAAATAAGAC-TACATCT
* * * *
43176900 TCAGCCTGCTCTCTCGCTACCTCAGAGAGATAAAGCTTGGTGGTGAAATCTGCTCCATTGCCGAT
64 TCAACCTGCTCTCTCGCTACCTCAGAGAGATAAAGCTTAGTGGTAAAATCTGCTCCACTGCCGAT
*
43176965 ACATGGAGATAAGATT-CCATCTACGAAGATCTGCTCCGCTACAACTTCAGGGAAATAAAATCTT
129 ACATGGAGATAAGATTACCATCTACGAAGATCTGCTCCGCTACAACTTCAGGGAAATAAAATCTC
* * * * * *
43177029 CAATTCTCAGTCTACTTCCTTGCTACTTCAAGAAGATAAGACTCATTCTTCAACCTGCTCTCTTG
194 CAAATCTCAGTCTACTTCCTTACTACCTCAAGAAGATAAGACTCATACTTCAACCTGCTCTCCTA
* *
43177094 CTACCTTAGAGAGATAAGGCTTGGTAGTAAAATATGCTCCATTACCGATACATGGAGATAAGAT
259 CTACCTTAGAGAGATAAGACCTGGTAGTAAAATATGCTCCATTACCGATACATGGAGATAAGAT
43177158 CTTCAATCTT
Statistics
Matches: 281, Mismatches: 37, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
368 154 0.55
369 3 0.01
370 71 0.25
371 47 0.17
372 6 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (369 bp):
GGAGATAAAATCTTCAATCTTCAGTATACTTCCTTGCTACCTCAGGAAAATAAGACTACATCTTC
AACCTGCTCTCTCGCTACCTCAGAGAGATAAAGCTTAGTGGTAAAATCTGCTCCACTGCCGATAC
ATGGAGATAAGATTACCATCTACGAAGATCTGCTCCGCTACAACTTCAGGGAAATAAAATCTCCA
AATCTCAGTCTACTTCCTTACTACCTCAAGAAGATAAGACTCATACTTCAACCTGCTCTCCTACT
ACCTTAGAGAGATAAGACCTGGTAGTAAAATATGCTCCATTACCGATACATGGAGATAAGATTCA
CCATCTGTGAAGATTTGCGAAGATCTGCTCCGCTGCAACTTCAG
Found at i:43180930 original size:18 final size:18
Alignment explanation
Indices: 43180907--43180957 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
43180897 AATCATCATC
43180907 ATAAGTAATAATATTTTA
1 ATAAGTAATAATATTTTA
43180925 ATAAGTAATAATATTTTA
1 ATAAGTAATAATATTTTA
* *
43180943 TTAATTAATTAATAT
1 ATAAGTAA-TAATAT
43180958 CATCTTTGTC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
18 24 0.80
19 6 0.20
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (18 bp):
ATAAGTAATAATATTTTA
Found at i:43181495 original size:162 final size:161
Alignment explanation
Indices: 43181228--43181524 Score: 558
Period size: 162 Copynumber: 1.8 Consensus size: 161
43181218 GAAATGATTA
*
43181228 GAAGATGAATTCTAGCTTGTTAGAAGTGTGAAAAAGAAATAAAAATGAATGGAAAATTTACTTGG
1 GAAGATGAATTCTAGCTTGTTAGAAGTGTGAAAAAGAAATAAAAATAAATGGAAAATTTACTTGG
43181293 TATATTTGGCCATGTTAAAGGGAAAGTAGAGAACATTGGCCCACTTTGTGTAATATTAATGCTAA
66 TATATTTGGCCATGTTAAAGGGAAAGTAGAGAACATTGG-CCACTTTGTGTAATATTAATGCTAA
43181358 ATGATAGCTTGTGAAGCAGTGAGTATTTTGGT
130 ATGATAGCTTGTGAAGCAGTGAGTATTTTGGT
* *
43181390 GAAGATGAATTCTAGTTTGTTAGAAGTGTGAAAAAGAAATAAAAATAAATTGAAAATTTACTTGG
1 GAAGATGAATTCTAGCTTGTTAGAAGTGTGAAAAAGAAATAAAAATAAATGGAAAATTTACTTGG
43181455 TATATTTGGCCATGTTAAAGGGAAAGTAGAGAACATTGGCCACTTTGTGTAATATTAATGCTAAA
66 TATATTTGGCCATGTTAAAGGGAAAGTAGAGAACATTGGCCACTTTGTGTAATATTAATGCTAAA
43181520 TGATA
131 TGATA
43181525 CTAGGAAACT
Statistics
Matches: 132, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
161 31 0.23
162 101 0.77
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (161 bp):
GAAGATGAATTCTAGCTTGTTAGAAGTGTGAAAAAGAAATAAAAATAAATGGAAAATTTACTTGG
TATATTTGGCCATGTTAAAGGGAAAGTAGAGAACATTGGCCACTTTGTGTAATATTAATGCTAAA
TGATAGCTTGTGAAGCAGTGAGTATTTTGGT
Found at i:43184431 original size:28 final size:28
Alignment explanation
Indices: 43184399--43184459 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
43184389 TATCCTTTTA
43184399 ATTGACTAGTAAATCCAATAACTAAAAG
1 ATTGACTAGTAAATCCAATAACTAAAAG
*
43184427 ATTGACTAGTAAATCCTATAACTAAAAG
1 ATTGACTAGTAAATCCAATAACTAAAAG
43184455 ATTGA
1 ATTGA
43184460 TTCTAGCATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (28 bp):
ATTGACTAGTAAATCCAATAACTAAAAG
Found at i:43188686 original size:19 final size:19
Alignment explanation
Indices: 43188659--43188701 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
43188649 TCATTAGTCT
*
43188659 AAATGCCTTATTTAAATTA
1 AAATACCTTATTTAAATTA
*
43188678 AAATACCTTATTTCAATTA
1 AAATACCTTATTTAAATTA
43188697 AAATA
1 AAATA
43188702 TTTACGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.40
Consensus pattern (19 bp):
AAATACCTTATTTAAATTA
Found at i:43188882 original size:21 final size:23
Alignment explanation
Indices: 43188838--43188882 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
43188828 AAAAAATTTG
*
43188838 ACAAATAAATTTTAATAGTTTTA
1 ACAAATAAATTCTAATAGTTTTA
*
43188861 ACAAATAAA-TCT-ATATTTTTA
1 ACAAATAAATTCTAATAGTTTTA
43188882 A
1 A
43188883 ACTTAAAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 2 0.10
23 9 0.45
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (23 bp):
ACAAATAAATTCTAATAGTTTTA
Found at i:43188920 original size:30 final size:29
Alignment explanation
Indices: 43188898--43188976 Score: 131
Period size: 29 Copynumber: 2.7 Consensus size: 29
43188888 AAAGGTAGAG
43188898 GGATTAAATTCTTAAAAATAAAAAGGAAA
1 GGATTAAATTCTTAAAAATAAAAAGGAAA
*
43188927 AGATTAAATTCTTAAAAATAAAAAGGAAA
1 GGATTAAATTCTTAAAAATAAAAAGGAAA
*
43188956 GGATTAAATTCTAACAAAATA
1 GGATTAAATTCTTA-AAAATA
43188977 TACCCAACGT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
29 40 0.87
30 6 0.13
ACGTcount: A:0.58, C:0.05, G:0.11, T:0.25
Consensus pattern (29 bp):
GGATTAAATTCTTAAAAATAAAAAGGAAA
Found at i:43192461 original size:19 final size:22
Alignment explanation
Indices: 43192438--43192486 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 22
43192428 TATGCAAGTG
43192438 AATAAATAAT-TT-AAAAAAT-
1 AATAAATAATGTTCAAAAAATA
*
43192457 TATAAAT-ATGTTCAAAAAATA
1 AATAAATAATGTTCAAAAAATA
43192478 AATAAATAA
1 AATAAATAA
43192487 AAATATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 2 0.08
19 8 0.33
20 7 0.29
21 6 0.25
22 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (22 bp):
AATAAATAATGTTCAAAAAATA
Found at i:43207851 original size:21 final size:22
Alignment explanation
Indices: 43207827--43207873 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 22
43207817 GTAAATGCTA
43207827 AAAAATTGAAAT-TT-ATGGTAG
1 AAAAA-TGAAATGTTGATGGTAG
*
43207848 -AAAATGAAATGTTGTTGGTAG
1 AAAAATGAAATGTTGATGGTAG
43207869 AAAAA
1 AAAAA
43207874 CAACTTTTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
19 6 0.27
20 6 0.27
21 6 0.27
22 4 0.18
ACGTcount: A:0.49, C:0.00, G:0.21, T:0.30
Consensus pattern (22 bp):
AAAAATGAAATGTTGATGGTAG
Found at i:43207857 original size:19 final size:22
Alignment explanation
Indices: 43207828--43207872 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
43207818 TAAATGCTAA
43207828 AAAATTGAAAT-TT-ATGGTAG
1 AAAATTGAAATGTTGATGGTAG
*
43207848 AAAA-TGAAATGTTGTTGGTAG
1 AAAATTGAAATGTTGATGGTAG
43207869 AAAA
1 AAAA
43207873 ACAACTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 6 0.27
20 6 0.27
21 10 0.45
ACGTcount: A:0.47, C:0.00, G:0.22, T:0.31
Consensus pattern (22 bp):
AAAATTGAAATGTTGATGGTAG
Found at i:43211773 original size:11 final size:11
Alignment explanation
Indices: 43211757--43211782 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
43211747 GTAGACACCA
43211757 AAAAAATTATT
1 AAAAAATTATT
43211768 AAAAAATTATT
1 AAAAAATTATT
43211779 AAAA
1 AAAA
43211783 TATTTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
AAAAAATTATT
Found at i:43213596 original size:47 final size:47
Alignment explanation
Indices: 43213520--43213729 Score: 287
Period size: 47 Copynumber: 4.4 Consensus size: 47
43213510 CTTCGGGACT
* * * * * *
43213520 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
43213567 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
43213613 TCATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
43213661 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
43213708 TATCACATATATATACACTTTC
1 TATCAC--ATATATACACTTTC
43213730 TGTGACACCC
Statistics
Matches: 146, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
46 3 0.02
47 127 0.87
48 2 0.01
49 14 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:43215778 original size:47 final size:47
Alignment explanation
Indices: 43215727--43215902 Score: 291
Period size: 47 Copynumber: 3.7 Consensus size: 47
43215717 TTAGGATTCT
* * *
43215727 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
43215774 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
43215821 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
43215868 ATGTGACGAATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
43215903 TCCCGAAGGG
Statistics
Matches: 123, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
46 1 0.01
47 122 0.99
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:43215802 original size:25 final size:25
Alignment explanation
Indices: 43215774--43215852 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
43215764 CTAATGGCCG
43215774 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
43215799 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
43215821 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
43215846 ATGTGAT
1 ATGTGAT
43215853 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:43216077 original size:37 final size:37
Alignment explanation
Indices: 43216021--43216099 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
43216011 CCGAGCTCTA
* * *
43216021 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
43216058 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
43216095 AAGAC
1 AAGAC
43216100 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:43217634 original size:47 final size:47
Alignment explanation
Indices: 43217521--43217808 Score: 477
Period size: 47 Copynumber: 6.0 Consensus size: 47
43217511 TACGGGGTGT
43217521 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATA
* * *
43217570 TACACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
43217617 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
43217664 TACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATA
* *
43217713 TACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
43217760 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
43217807 TA
1 TA
43217809 TATACATTCA
Statistics
Matches: 224, Mismatches: 13, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
47 141 0.63
49 83 0.37
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
Found at i:43217712 original size:96 final size:95
Alignment explanation
Indices: 43217521--43217821 Score: 487
Period size: 96 Copynumber: 3.1 Consensus size: 95
43217511 TACGGGGTGT
43217521 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCA
* * *
43217586 TCACATTGGTCATTCGGCCTTATCAC-ATATA
64 TCACATCGGCCATTAGGCCTTATCACAATATA
*
43217617 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTCCACATTCATC
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
43217682 ACATCGGCCATTAGGCCTTATCACATATATA
66 ACATCGGCCATTAGGCCTTATCACA-ATATA
* *
43217713 TACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATC
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
43217778 ACATCGGCCATTAGGCCTTATCACACATATA
66 ACATCGGCCATTAGGCCTTATCACA-ATATA
* *
43217809 TATACATTCACAT
1 TACACTTTCACAT
43217822 CACAATTATC
Statistics
Matches: 193, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
94 43 0.22
96 150 0.78
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (95 bp):
TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
ACATCGGCCATTAGGCCTTATCACAATATA
Found at i:43217779 original size:143 final size:143
Alignment explanation
Indices: 43217521--43217808 Score: 549
Period size: 143 Copynumber: 2.0 Consensus size: 143
43217511 TACGGGGTGT
*
43217521 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
1 TACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
*
43217586 TCACATTGGTCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
43217651 CTTATCACATATA
131 CTTATCACACATA
43217664 TACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
1 TACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
43217729 TCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43217794 CTTATCACACATA
131 CTTATCACACATA
43217807 TA
1 TA
43217809 TATACATTCA
Statistics
Matches: 142, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
143 142 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (143 bp):
TACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
TCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
CTTATCACACATA
Found at i:43220625 original size:35 final size:35
Alignment explanation
Indices: 43220586--43220667 Score: 85
Period size: 35 Copynumber: 2.3 Consensus size: 35
43220576 ATACACACAA
* *
43220586 ATTTATCATCTCAT-CAATAGACCACATTACCAAAC
1 ATTTAACAT-TCATGCAATAAACCACATTACCAAAC
* * *
43220621 ATTTAACATTCATGCCATAAATCACATTTCCAAAC
1 ATTTAACATTCATGCAATAAACCACATTACCAAAC
* *
43220656 AATTCACATTCA
1 ATTTAACATTCA
43220668 CCAAGCATAC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
34 4 0.10
35 35 0.90
ACGTcount: A:0.40, C:0.27, G:0.02, T:0.30
Consensus pattern (35 bp):
ATTTAACATTCATGCAATAAACCACATTACCAAAC
Found at i:43226133 original size:40 final size:40
Alignment explanation
Indices: 43226050--43226312 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
43226040 TTGAATGCTG
* * * * * *
43226050 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
43226090 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
43226130 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
43226170 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
43226210 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
43226250 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
43226289 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
43226313 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:43226332 original size:79 final size:80
Alignment explanation
Indices: 43226089--43226347 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
43226079 AAGTGAATAT
* * * * * * *
43226089 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
43226153 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
43226169 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
43226234 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
43226249 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
43226313 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
43226328 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
43226348 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:43234086 original size:40 final size:40
Alignment explanation
Indices: 43234003--43234265 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
43233993 TTGAATGCTG
* * * * * *
43234003 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
43234043 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
43234083 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
43234123 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
43234163 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
43234203 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
43234242 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
43234266 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:43234285 original size:79 final size:80
Alignment explanation
Indices: 43234042--43234300 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
43234032 AAGTGAATAT
* * * * * * *
43234042 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
43234106 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
43234122 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
43234187 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
43234202 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
43234266 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
43234281 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
43234301 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:43244210 original size:25 final size:26
Alignment explanation
Indices: 43244175--43244232 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
43244165 CACTTTTATC
43244175 TTTA-TTTATCTT-CTTTAAGTACT-T
1 TTTATTTTATCTTCCTTTAA-TACTAT
43244199 TTTATTTTATCTTCCTTTAATACTAT
1 TTTATTTTATCTTCCTTTAATACTAT
*
43244225 TTCATTTT
1 TTTATTTT
43244233 TAGGTTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 12 0.40
26 14 0.47
ACGTcount: A:0.21, C:0.14, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTATTTTATCTTCCTTTAATACTAT
Found at i:43245890 original size:28 final size:28
Alignment explanation
Indices: 43245853--43245911 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
43245843 ACTTATGGTT
43245853 TATTTTGAGATATTATTGATAGGAATTA
1 TATTTTGAGATATTATTGATAGGAATTA
*
43245881 TATTTTGAGATATTATTGATTGGAATTA
1 TATTTTGAGATATTATTGATAGGAATTA
43245909 TAT
1 TAT
43245912 GTATCATTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (28 bp):
TATTTTGAGATATTATTGATAGGAATTA
Found at i:43255861 original size:16 final size:16
Alignment explanation
Indices: 43255840--43255890 Score: 102
Period size: 16 Copynumber: 3.2 Consensus size: 16
43255830 CCTTGAATTG
43255840 ATCAAATAGATCATCA
1 ATCAAATAGATCATCA
43255856 ATCAAATAGATCATCA
1 ATCAAATAGATCATCA
43255872 ATCAAATAGATCATCA
1 ATCAAATAGATCATCA
43255888 ATC
1 ATC
43255891 TTTGGCAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.49, C:0.20, G:0.06, T:0.25
Consensus pattern (16 bp):
ATCAAATAGATCATCA
Found at i:43270806 original size:46 final size:46
Alignment explanation
Indices: 43270671--43270888 Score: 146
Period size: 46 Copynumber: 4.7 Consensus size: 46
43270661 GTTATTGTAA
* * * *
43270671 GCTAGTGTAAGACATGTCTGGGACATGAATCAGCCACATTATGA-GA--
1 GCTAGTGTAAGACATGTCTGGGGCATGCATC-GGCA-ATGA-GACGAGT
* * * * * *
43270717 GCCAGTGTAAGACCATGTCTAGGACATGGCATCAGTATTGAGACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGGCAT-GCATCGGCAATGAGACGAGT
* *
43270765 GCTAGTGTAAGACATGTTTGGGGCATGCATCGGC-CTCGAGAC-A-T
1 GCTAGTGTAAGACATGTCTGGGGCATGCATCGGCAAT-GAGACGAGT
* * * *
43270809 AAGCCAATGTAAGACATGTCTGGGACATTCATCGGCAATGAGA-G-GT
1 --GCTAGTGTAAGACATGTCTGGGGCATGCATCGGCAATGAGACGAGT
43270855 GCTAGTGTAAGACCATGTCTGGGGCATGGCATCG
1 GCTAGTGTAAGA-CATGTCTGGGGCAT-GCATCG
43270889 ACACAGATAT
Statistics
Matches: 134, Mismatches: 25, Indels: 26
0.72 0.14 0.14
Matches are distributed among these distances:
44 11 0.08
45 17 0.13
46 65 0.49
47 26 0.19
48 15 0.11
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGGCATGCATCGGCAATGAGACGAGT
Found at i:43273009 original size:42 final size:42
Alignment explanation
Indices: 43272920--43273011 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 42
43272910 CAAATCAGTG
* * *
43272920 CCGACGCCATGTCCCAGACATGGTATTATACGAGACCTCATA
1 CCGATGCCATGTCCCAGACATGGTATTATACGAAACCACATA
* * * * *
43272962 TCGATGCCATGTCTCAGACATGGTCTTATACGAAATCACTTA
1 CCGATGCCATGTCCCAGACATGGTATTATACGAAACCACATA
43273004 CCGATGCC
1 CCGATGCC
43273012 GAAGCCATAT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (42 bp):
CCGATGCCATGTCCCAGACATGGTATTATACGAAACCACATA
Found at i:43273012 original size:90 final size:90
Alignment explanation
Indices: 43272833--43273039 Score: 211
Period size: 90 Copynumber: 2.3 Consensus size: 90
43272823 TAGGGTTCCA
* * * * *
43272833 AAGCCATGTCCCAGACATGGTCTTACATGGGACCACACATCGATGCGATATCCTAGATATGGTCT
1 AAGCCATGTCCCAGACATGGTATTACACGAGACCACACATCGATGCCATATCCTAGACATGGTCT
* * *
43272898 TATACGAAGTCTCAAATCAGTGCCG
66 TATACGAAATCACAAACCAGTGCCG
* * * * *
43272923 ACGCCATGTCCCAGACATGGTATTATACGAGACCTCATATCGATGCCATGT-CTCAGACATGGTC
1 AAGCCATGTCCCAGACATGGTATTACACGAGACCACACATCGATGCCATATCCT-AGACATGGTC
**
43272987 TTATACGAAATCACTTACC-GATGCCG
65 TTATACGAAATCACAAACCAG-TGCCG
* * * *
43273013 AAGCCATATCCCTGATATGGTTTTACA
1 AAGCCATGTCCCAGACATGGTATTACA
43273040 TAGGATCGTG
Statistics
Matches: 94, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
89 3 0.03
90 91 0.97
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (90 bp):
AAGCCATGTCCCAGACATGGTATTACACGAGACCACACATCGATGCCATATCCTAGACATGGTCT
TATACGAAATCACAAACCAGTGCCG
Found at i:43279692 original size:12 final size:12
Alignment explanation
Indices: 43279644--43279697 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
43279634 ACCTAATCAC
43279644 TTTAATATTAAA
1 TTTAATATTAAA
43279656 -TTAATATTGATAA
1 TTTAATATT-A-AA
**
43279669 TTATTTTATTAAA
1 TT-TAATATTAAA
43279682 TTTAATATTAAA
1 TTTAATATTAAA
43279694 TTTA
1 TTTA
43279698 TTAAAATAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
11 8 0.24
12 13 0.38
13 6 0.18
14 2 0.06
15 5 0.15
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:43296351 original size:54 final size:58
Alignment explanation
Indices: 43296271--43296409 Score: 182
Period size: 54 Copynumber: 2.5 Consensus size: 58
43296261 AAAATTATTA
***
43296271 AAAGTTAATTAGTTTTTTATGATTTTAAAATTTGAAA-ATT-T-TTGAA-CTTTTTTT
1 AAAGTTAATTAGTTTTTTATGATTTTAAAATTTGAAATATTATAAAAAAGCTTTTTTT
* * *
43296325 AAAGTTAATTAGATTTTTATGATTTT-AAATTTTAAATATTATAAAAAAGGTTTTTTT
1 AAAGTTAATTAGTTTTTTATGATTTTAAAATTTGAAATATTATAAAAAAGCTTTTTTT
43296382 -AAGTTAATTAGTTTTTTATGATTTTAAA
1 AAAGTTAATTAGTTTTTTATGATTTTAAA
43296410 TTTTATTATT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
53 9 0.12
54 28 0.38
55 1 0.01
56 26 0.36
57 9 0.12
ACGTcount: A:0.37, C:0.01, G:0.09, T:0.53
Consensus pattern (58 bp):
AAAGTTAATTAGTTTTTTATGATTTTAAAATTTGAAATATTATAAAAAAGCTTTTTTT
Found at i:43296391 original size:56 final size:53
Alignment explanation
Indices: 43296271--43296414 Score: 182
Period size: 56 Copynumber: 2.6 Consensus size: 53
43296261 AAAATTATTA
* ***
43296271 AAAGTTAATTAGTTTTTTATGATTTTAAAATTTGAAAATTTTTGAACTTTTTTT
1 AAAGTTAATTAGTTTTTTATGATTTT-AAATTTTAAAATTTAAAAACTTTTTTT
* *
43296325 AAAGTTAATTAGATTTTTATGATTTTAAATTTTAAATATTATAAAAAAGGTTTTTTT
1 AAAGTTAATTAGTTTTTTATGATTTTAAATTTTAAA-ATT-T-AAAAA-CTTTTTTT
43296382 -AAGTTAATTAGTTTTTTATGATTTTAAATTTTA
1 AAAGTTAATTAGTTTTTTATGATTTTAAATTTTA
43296415 TTATTTCATT
Statistics
Matches: 79, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
53 9 0.11
54 28 0.35
55 1 0.01
56 34 0.43
57 7 0.09
ACGTcount: A:0.36, C:0.01, G:0.09, T:0.54
Consensus pattern (53 bp):
AAAGTTAATTAGTTTTTTATGATTTTAAATTTTAAAATTTAAAAACTTTTTTT
Found at i:43298795 original size:33 final size:34
Alignment explanation
Indices: 43298695--43298799 Score: 122
Period size: 34 Copynumber: 3.1 Consensus size: 34
43298685 AACACATGTC
* * *
43298695 ATAAGCATGTTTACTGCTACCGTATTGATCTATT
1 ATAAGCATGTTTATTGCTACCGTATTGATTTGTT
* * * ** *
43298729 ATAAGCATGATAATTGCTACAGTATCAACTTGTT
1 ATAAGCATGTTTATTGCTACCGTATTGATTTGTT
43298763 ATAAGCAT-TTTATTGCTACCGTATTGATTTGTT
1 ATAAGCATGTTTATTGCTACCGTATTGATTTGTT
43298796 ATAA
1 ATAA
43298800 TTATGTTGCA
Statistics
Matches: 56, Mismatches: 15, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
33 23 0.41
34 33 0.59
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.41
Consensus pattern (34 bp):
ATAAGCATGTTTATTGCTACCGTATTGATTTGTT
Found at i:43298922 original size:48 final size:48
Alignment explanation
Indices: 43298851--43298985 Score: 207
Period size: 48 Copynumber: 2.8 Consensus size: 48
43298841 AGTAGTCGAT
* * *
43298851 AGTTTATCTGCACGACTAATGGTTCATCCACAACGTATTTTAGTCGGC
1 AGTTTATCTGCACGACCAATGGTTCATCCACAACATATTTTAGTAGGC
* *
43298899 AGTTTATCTGCATGACCAGTGGTTCATCCACAACATATTTTAGTAGGC
1 AGTTTATCTGCACGACCAATGGTTCATCCACAACATATTTTAGTAGGC
* *
43298947 AGTTTATCTACACAACCAATGGTTCATCCACAACATATT
1 AGTTTATCTGCACGACCAATGGTTCATCCACAACATATT
43298986 AGCATCTTTT
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33
Consensus pattern (48 bp):
AGTTTATCTGCACGACCAATGGTTCATCCACAACATATTTTAGTAGGC
Found at i:43299648 original size:18 final size:19
Alignment explanation
Indices: 43299625--43299660 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
43299615 TAATTTTAAT
43299625 TTTTAG-GAATAAATAAAC
1 TTTTAGAGAATAAATAAAC
*
43299643 TTTTAGATAATAAATAAA
1 TTTTAGAGAATAAATAAA
43299661 TTAAAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.36
Consensus pattern (19 bp):
TTTTAGAGAATAAATAAAC
Found at i:43300998 original size:17 final size:17
Alignment explanation
Indices: 43300976--43301009 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
43300966 ATTATAAAAT
43300976 CAAATCTTATT-AGATTA
1 CAAATCTT-TTAAGATTA
43300993 CAAATCTTTTAAGATTA
1 CAAATCTTTTAAGATTA
43301010 TTTTTCCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (17 bp):
CAAATCTTTTAAGATTA
Found at i:43303887 original size:18 final size:18
Alignment explanation
Indices: 43303838--43303883 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
43303828 CAGATTAAAA
*
43303838 GGGCTCACACGCCCGTGT
1 GGGCTCACACGCCTGTGT
*
43303856 GGGCCCACACGCCTGTGT
1 GGGCTCACACGCCTGTGT
43303874 GGG-TCACACG
1 GGGCTCACACG
43303884 GCCTAAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 6 0.24
18 19 0.76
ACGTcount: A:0.13, C:0.37, G:0.35, T:0.15
Consensus pattern (18 bp):
GGGCTCACACGCCTGTGT
Found at i:43319186 original size:27 final size:29
Alignment explanation
Indices: 43319156--43319211 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 29
43319146 AAAGATTGTT
* *
43319156 AAAACTCTTCTAAAAGAAAA-CT-AAAGA
1 AAAAATCTTCAAAAAGAAAAGCTCAAAGA
*
43319183 AAAAATCTTGAAAAAGAAAAGCTCAAAGA
1 AAAAATCTTCAAAAAGAAAAGCTCAAAGA
43319212 GAAGTTGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 17 0.71
28 2 0.08
29 5 0.21
ACGTcount: A:0.61, C:0.12, G:0.11, T:0.16
Consensus pattern (29 bp):
AAAAATCTTCAAAAAGAAAAGCTCAAAGA
Found at i:43323789 original size:49 final size:48
Alignment explanation
Indices: 43323683--43323935 Score: 197
Period size: 49 Copynumber: 5.4 Consensus size: 48
43323673 GGTATAATGT
* * * * * * *
43323683 CGATGCCATGTTCTAGACATGGTCTTACACTGGC-T-CACCCATCAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGACTTACATCTATCAGGC
* * * *
43323730 CGATGCCATGTCTCAGACAAGTCTTACACTGACTTTCATATATCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTACATCTATC-AGGC
* *
43323779 CGATGCCATGTCCCAAACAGGTCTTACACT-AGCTCT-CATCTATCAGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CT-TACATCTATCAG-GC
* *
43323828 CGATGCCATGTCCCAGGCATGGTCTTACACTAAC--ACATCTCAT-A-GC
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGACTTACATCT-ATCAGGC
* *
43323874 CGATG-CATGTCCCAGACATGTCTTACACTGGCTTACAT-T-TCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTACATCTATC-AGGC
43323920 CGATG-CATGTCCCAGA
1 CGATGCCATGTCCCAGA
43323936 TATGTATTAC
Statistics
Matches: 169, Mismatches: 22, Indels: 31
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 11 0.07
45 14 0.08
46 40 0.24
47 17 0.10
48 14 0.08
49 58 0.34
50 13 0.08
51 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTTACATCTATCAGGC
Found at i:43323922 original size:46 final size:48
Alignment explanation
Indices: 43323730--43324045 Score: 246
Period size: 46 Copynumber: 6.7 Consensus size: 48
43323720 CCCATCAAGT
* * *
43323730 CGATGCCATGTCTCAGACAAGTCTTACACT-GACTTTCATATATCGAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAG-CTCTCATAT-TCGAGGC
* * * *
43323779 CGATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATCTATC-AGTGT
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATAT-TCGAG-GC
* * *
43323828 CGATGCCATGTCCCAGGCATGGTCTTACACTAACACATC-TCA-T--A-GC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTC-TCAT-ATTCGAGGC
*
43323874 CGATG-CATGTCCCAGACATGTCTTACACTGGCT-TACAT-TTCGAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTCT-CATATTCGAGGC
* * * * *
43323920 CGATG-CATGTCCCAGATATGTATTACACTAGCTCTCGT-TTCAATGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATATTCGAGGC
* * * * * *
43323966 TGATGCCATATCCCAGGCATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCATATTCGAGGC
*
43324014 TGATG-CATGTCCCAGACATGTCTTACACTAGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGC
43324046 ACACAAATAA
Statistics
Matches: 215, Mismatches: 37, Indels: 33
0.75 0.13 0.12
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 12 0.06
45 14 0.07
46 62 0.29
47 24 0.11
48 26 0.12
49 57 0.27
50 15 0.07
51 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATATTCGAGGC
Found at i:43323991 original size:94 final size:92
Alignment explanation
Indices: 43323875--43324045 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 92
43323865 TCTCATAGCC
* * *
43323875 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACAT-TTCGAGGCCGATGCATGTCCCAGATA
1 GATGCATATCCCAGACATGTCTTACACTGGCTCT-CATAAT-GAGGCCGATGCATGTCCCAGACA
43323938 TGTATTACACTAGCTCTCGTTTCAATGCT
64 TGTATTACACTAGCTCTCGTTTCAATGCT
* * *
43323967 GATGCCATATCCCAGGCATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAGACA
1 GATG-CATATCCCAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACA
*
43324032 TGTCTTACACTAGC
64 TGTATTACACTAGC
43324046 ACACAAATAA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 4 0.06
93 12 0.18
94 50 0.74
95 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (92 bp):
GATGCATATCCCAGACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACATG
TATTACACTAGCTCTCGTTTCAATGCT
Found at i:43324020 original size:140 final size:143
Alignment explanation
Indices: 43323730--43324042 Score: 379
Period size: 140 Copynumber: 2.2 Consensus size: 143
43323720 CCCATCAAGT
* * *
43323730 CGATGCCATGTCTCAGACAAGTCTTACACTGACTTTCATATATCGAGGCCGATGCCATGTCCCAA
1 CGATG-CATGTCCCAGACATGTCTTACACTGACTTACATATATCGAGGCCGATGCCATGTCCCAA
* * *
43323795 ACAGGTCTTACACTAGCTCTCATCTATCAGTGTCGATGCCATGTCCCAGGCATGGTCTTACACTA
65 ACAGGTATTACACTAGCTCTCATCTATCAATGTCGATGCCATATCCCAGGCATGGTCTTACACTA
*
43323860 ACACATCTCATAGC
130 ACACATCTAATAGC
* *
43323874 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACAT-T-TCGAGGCCGATG-CATGTCCCAGA
1 CGATGCATGTCCCAGACATGTCTTACACTGACTTACATATATCGAGGCCGATGCCATGTCCCAAA
* * * *
43323936 TATGTATTACACTAGCTCTCGT-T-TCAATG-CTGATGCCATATCCCAGGCATGGTCTTACACTG
66 CAGGTATTACACTAGCTCTCATCTATCAATGTC-GATGCCATATCCCAGGCATGGTCTTACACTA
* * *
43323998 GCTC-TCATAATGTGGC
130 ACACATC-TAA--TAGC
*
43324014 TGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
43324043 AGCACACAAA
Statistics
Matches: 148, Mismatches: 17, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
137 3 0.02
138 38 0.26
139 1 0.01
140 59 0.40
141 12 0.08
142 1 0.01
143 29 0.20
144 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (143 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACTTACATATATCGAGGCCGATGCCATGTCCCAAA
CAGGTATTACACTAGCTCTCATCTATCAATGTCGATGCCATATCCCAGGCATGGTCTTACACTAA
CACATCTAATAGC
Found at i:43328456 original size:23 final size:23
Alignment explanation
Indices: 43328410--43328456 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
43328400 ATTTGGATGA
* *
43328410 TGATTTTTGAGTTATTCTATTGT
1 TGATTTTTGAGTTATTATAATGT
43328433 TGATTTTGTGAGTT-TTATAATGT
1 TGATTTT-TGAGTTATTATAATGT
43328456 T
1 T
43328457 AGTTGATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.19, C:0.02, G:0.19, T:0.60
Consensus pattern (23 bp):
TGATTTTTGAGTTATTATAATGT
Found at i:43333437 original size:13 final size:13
Alignment explanation
Indices: 43333419--43333461 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
43333409 TTTAATAATA
43333419 AAATAAAGAAATG
1 AAATAAAGAAATG
43333432 AAATAAAGAAAT-
1 AAATAAAGAAATG
* *
43333444 AAATGAAATAAAAG
1 AAAT-AAAGAAATG
43333458 AAAT
1 AAAT
43333462 GAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 4 0.15
13 18 0.69
14 4 0.15
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
AAATAAAGAAATG
Found at i:43333449 original size:17 final size:18
Alignment explanation
Indices: 43333415--43333461 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
43333405 ATAGTTTAAT
* *
43333415 AATAAAATAAAGAAATGA
1 AATAAAAGAAATAAATGA
43333433 AAT-AAAGAAATAAATGA
1 AATAAAAGAAATAAATGA
43333450 AATAAAAGAAAT
1 AATAAAAGAAAT
43333462 GAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (18 bp):
AATAAAAGAAATAAATGA
Found at i:43333453 original size:9 final size:9
Alignment explanation
Indices: 43333427--43333461 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
43333417 TAAAATAAAG
43333427 AAATGAAAT
1 AAATGAAAT
43333436 AAA-GAAAT
1 AAATGAAAT
43333444 AAATGAAAT
1 AAATGAAAT
*
43333453 AAAAGAAAT
1 AAATGAAAT
43333462 GAAAAAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.17
Consensus pattern (9 bp):
AAATGAAAT
Found at i:43333513 original size:4 final size:4
Alignment explanation
Indices: 43333504--43333538 Score: 61
Period size: 4 Copynumber: 8.5 Consensus size: 4
43333494 AGAACAAGGG
43333504 AGAA AGAA AGGAA AGAA AGAA AGAA AGAA AGAA AG
1 AGAA AGAA A-GAA AGAA AGAA AGAA AGAA AGAA AG
43333539 GGAGAAAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 26 0.87
5 4 0.13
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:43333544 original size:12 final size:12
Alignment explanation
Indices: 43333499--43333545 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
43333489 AGAGAAGAAC
*
43333499 AAGGGAGAAAGA
1 AAGGAAGAAAGA
43333511 AAGGAAAGAAAGA
1 AAGG-AAGAAAGA
*
43333524 AAGAAAGAAAGA
1 AAGGAAGAAAGA
*
43333536 AAGGGAGAAA
1 AAGGAAGAAA
43333546 AGGGAAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
12 20 0.67
13 10 0.33
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (12 bp):
AAGGAAGAAAGA
Found at i:43334857 original size:5 final size:5
Alignment explanation
Indices: 43334842--43334883 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
43334832 AGTGGAAAAG
* *
43334842 TGAATT TGAAT TGAAT TGAAT TGAAT TGAAT GGAAT GGAAT T
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT T
43334884 ATGATTAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
5 30 0.88
6 4 0.12
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (5 bp):
TGAAT
Found at i:43335356 original size:45 final size:45
Alignment explanation
Indices: 43335292--43335435 Score: 207
Period size: 45 Copynumber: 3.2 Consensus size: 45
43335282 CTGTTAACGC
* * * *
43335292 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCAAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
43335337 TACTGTTACCGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
* * * * *
43335382 TACTGTTACCGTAATCGATTCGGCACTGTGTGAGTTGAATACTGT
1 TACTGTTACCGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
43335427 TACTGTTAC
1 TACTGTTAC
43335436 TGTTGCTATT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 90 1.00
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.38
Consensus pattern (45 bp):
TACTGTTACCGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
Found at i:43335851 original size:18 final size:18
Alignment explanation
Indices: 43335609--43335854 Score: 106
Period size: 18 Copynumber: 13.3 Consensus size: 18
43335599 AAATGTATAA
* *
43335609 AATAACTGATTATTACTG
1 AATAATTGATTGTTACTG
*
43335627 AATAATTGACTGTTACTG
1 AATAATTGATTGTTACTG
* * *
43335645 GAT-ATTAGACTGTTACTA
1 AATAATT-GATTGTTACTG
* * *
43335663 AATAACTGAATATTACTG
1 AATAATTGATTGTTACTG
**
43335681 AATAATTGATCATTACTG
1 AATAATTGATTGTTACTG
* *
43335699 AATAACTGATTGTCACTG
1 AATAATTGATTGTTACTG
* *
43335717 AATGAA-TGACTGCTACTG
1 AAT-AATTGATTGTTACTG
* * *
43335735 AATAACTTAATAGTTATTG
1 AATAA-TTGATTGTTACTG
*
43335754 AAT-ATCTGA-T-TTATTG
1 AATAAT-TGATTGTTACTG
* *
43335770 AATAATTAACTGTTACTGG
1 AATAATTGATTGTTACT-G
* *
43335789 ATAACCGATCAATTGATCGATACTG
1 ---A---AT-AATTGATTGTTACTG
* * * *
43335814 AATAACTGGTTATTATTG
1 AATAATTGATTGTTACTG
43335832 AATAATTGATTGTTACTG
1 AATAATTGATTGTTACTG
43335850 AATAA
1 AATAA
43335855 ATAATTATTC
Statistics
Matches: 168, Mismatches: 43, Indels: 34
0.69 0.18 0.14
Matches are distributed among these distances:
16 11 0.07
17 9 0.05
18 116 0.69
19 17 0.10
22 2 0.01
25 3 0.02
26 10 0.06
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (18 bp):
AATAATTGATTGTTACTG
Found at i:43338684 original size:23 final size:23
Alignment explanation
Indices: 43338615--43338754 Score: 81
Period size: 23 Copynumber: 5.9 Consensus size: 23
43338605 CAGCTCGTAT
*
43338615 GAGCTTACCGATATATCAGCTCATAA
1 GAGCTTACCG-T-T-TCAGCTCATTA
** * *
43338641 GAGCTTACTATTTTCAACTCATTG
1 GAGCTTAC-CGTTTCAGCTCATTA
43338665 GAGCTTACCGTTTCAGCTCA-TA
1 GAGCTTACCGTTTCAGCTCATTA
* * *
43338687 TGAGGTTA-C-TATTCACCTTGA-TA
1 -GAGCTTACCGT-TTCAGC-TCATTA
*
43338710 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACCGTTTCAGCTCATTA
*
43338733 GAGCTTACTGTTCATCAGCTCA
1 GAGCTTACCGTT--TCAGCTCA
43338755 AGAGGAGCTT
Statistics
Matches: 89, Mismatches: 16, Indels: 19
0.72 0.13 0.15
Matches are distributed among these distances:
21 1 0.01
22 15 0.17
23 38 0.43
24 17 0.19
25 9 0.10
26 9 0.10
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCATTA
Found at i:43338696 original size:47 final size:45
Alignment explanation
Indices: 43338615--43338746 Score: 133
Period size: 45 Copynumber: 2.8 Consensus size: 45
43338605 CAGCTCGTAT
*
43338615 GAGCTTACCGATATATCAGCTCATAAGAGCTTACTATTTTCAAC-TCATTG
1 GAGCTTACCG-T-T-TCAGCTCATAAGAGCTTACTA--TTCAACTTCA-TA
* * * *
43338665 GAGCTTACCGTTTCAGCTCATATGAGGTTACTATTCACCTTGATA
1 GAGCTTACCGTTTCAGCTCATAAGAGCTTACTATTCAACTTCATA
*
43338710 GAGCTTACCGTTTCAGCTCA-ATAGAGCTTACTGTTCA
1 GAGCTTACCGTTTCAGCTCATA-AGAGCTTACTATTCA
43338747 TCAGCTCAAG
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
44 1 0.01
45 38 0.53
46 2 0.03
47 19 0.26
48 1 0.01
49 1 0.01
50 10 0.14
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.34
Consensus pattern (45 bp):
GAGCTTACCGTTTCAGCTCATAAGAGCTTACTATTCAACTTCATA
Found at i:43338778 original size:25 final size:25
Alignment explanation
Indices: 43338709--43338786 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 25
43338699 TCACCTTGAT
* *
43338709 AGAGCTTACCGTT--TCAGCTCAAT
1 AGAGCTTACTGTTCATCAGCTCAAG
43338732 AGAGCTTACTGTTCATCAGCTCAAG
1 AGAGCTTACTGTTCATCAGCTCAAG
* *
43338757 AGGAGCTTACTGTTCAT-GGCTCAAA
1 A-GAGCTTACTGTTCATCAGCTCAAG
43338782 AGAGC
1 AGAGC
43338787 ATAAATGATA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
23 12 0.25
24 4 0.08
25 17 0.35
26 15 0.31
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (25 bp):
AGAGCTTACTGTTCATCAGCTCAAG
Done.