Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 138 of 352
Found at i:44800794 original size:14 final size:14
Alignment explanation
Indices: 44800775--44800804 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
44800765 TTGAAAGTTT
44800775 GTCCTTGGAGGAAA
1 GTCCTTGGAGGAAA
*
44800789 GTCCTTGGAGGCAA
1 GTCCTTGGAGGAAA
44800803 GT
1 GT
44800805 TGAGTCCTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.23
Consensus pattern (14 bp):
GTCCTTGGAGGAAA
Found at i:44801359 original size:16 final size:17
Alignment explanation
Indices: 44801338--44801372 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
44801328 AAATATTATG
44801338 AAATAAA-AACAAACAA
1 AAATAAACAACAAACAA
*
44801354 AAATAAACATCAAACAA
1 AAATAAACAACAAACAA
44801371 AA
1 AA
44801373 GTCATCCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.77, C:0.14, G:0.00, T:0.09
Consensus pattern (17 bp):
AAATAAACAACAAACAA
Found at i:44803830 original size:661 final size:661
Alignment explanation
Indices: 44802570--44803891 Score: 2617
Period size: 661 Copynumber: 2.0 Consensus size: 661
44802560 CATATGTTAT
44802570 TTCTAGTACTATAATTAGGCAATTAATTTCATGCACATCAAACACCGAATAAATCAAACAAGTGG
1 TTCTAGTACTATAATTAGGCAATTAATTTCATGCACATCAAACACCGAATAAATCAAACAAGTGG
44802635 CATTCCTTAGTTGCTAGTAAACCACTCCATGGAAGCTTCATTTATCATTAGTAAAAATTCATGCT
66 CATTCCTTAGTTGCTAGTAAACCACTCCATGGAAGCTTCATTTATCATTAGTAAAAATTCATGCT
44802700 TCACACATCGTGTTATCAATCAACAATACACTGTAAGTCATTTAATAATTAAACTCAAACATGCC
131 TCACACATCGTGTTATCAATCAACAATACACTGTAAGTCATTTAATAATTAAACTCAAACATGCC
44802765 ACAAAATTATTATAAAACCATCCAAAATAAATGTCCAAAGTCCAATTACAACCAAAGTCAAACTA
196 ACAAAATTATTATAAAACCATCCAAAATAAATGTCCAAAGTCCAATTACAACCAAAGTCAAACTA
44802830 ATTCTCGGGAGTTCGAAAATGCCTGATTACAGTCTCTAAAATGTGTAATAAAGTCTCTAGCAAGC
261 ATTCTCGGGAGTTCGAAAATGCCTGATTACAGTCTCTAAAATGTGTAATAAAGTCTCTAGCAAGC
44802895 CTAAATCTCTTGGAACTCTCTTGGTCGACTCCTCTACTCCTCAATCCCGATGAGTATTTGCATGA
326 CTAAATCTCTTGGAACTCTCTTGGTCGACTCCTCTACTCCTCAATCCCGATGAGTATTTGCATGA
44802960 ATTATGAGGGTGTGAGCTTTAAAAAGCTCAATGAGTTAATAAAAACGACTAGTAAATTAACATTA
391 ATTATGAGGGTGTGAGCTTTAAAAAGCTCAATGAGTTAATAAAAACGACTAGTAAATTAACATTA
44803025 AATTCACGCTTAATTCATAACAAAACATTCACCAATTGTCAACCAAAATAATTAAACATGTCAAC
456 AATTCACGCTTAATTCATAACAAAACATTCACCAATTGTCAACCAAAATAATTAAACATGTCAAC
44803090 TTAATTTCTATAAGTATTTTCAATGCCAAAAATCATTTATTCATGGCTTTCAATCATCAATTGAT
521 TTAATTTCTATAAGTATTTTCAATGCCAAAAATCATTTATTCATGGCTTTCAATCATCAATTGAT
44803155 ATAGAAACAATCACACATAAATATATTGGCATACACTTCTCATGGCTTAATCGACTGATCATAAA
586 ATAGAAACAATCACACATAAATATATTGGCATACACTTCTCATGGCTTAATCGACTGATCATAAA
44803220 TCAAATAAACA
651 TCAAATAAACA
44803231 TTCTAGTACTATAATTAGGCAATTAATTTCATGCACATCAAACACCGAATAAATCAAACAAGTGG
1 TTCTAGTACTATAATTAGGCAATTAATTTCATGCACATCAAACACCGAATAAATCAAACAAGTGG
44803296 CATTCCTTAGTTGCTAGTAAACCACTCCATGGAAGCTTCATTTATCATTAGTAAAAATTCATGCT
66 CATTCCTTAGTTGCTAGTAAACCACTCCATGGAAGCTTCATTTATCATTAGTAAAAATTCATGCT
44803361 TCACACATCGTGTTATCAATCAACAATACACTGTAAGTCATTTAATAATTAAACTCAAACATGCC
131 TCACACATCGTGTTATCAATCAACAATACACTGTAAGTCATTTAATAATTAAACTCAAACATGCC
44803426 ACAAAATTATTATAAAACCATCCAAAATAAATGTCCAAAGTCCAATTACAACCAAAGTCAAACTA
196 ACAAAATTATTATAAAACCATCCAAAATAAATGTCCAAAGTCCAATTACAACCAAAGTCAAACTA
44803491 ATTCTCGGGAGTTCGAAAATGCCTGATTACAGTCTCTAAAATGTGTAATAAAGTCTCTAGCAAGC
261 ATTCTCGGGAGTTCGAAAATGCCTGATTACAGTCTCTAAAATGTGTAATAAAGTCTCTAGCAAGC
*
44803556 CTAAATCTCTTGGAACTCTCTTGGTCGACTCCTCTACTCCTCAATCCTGATGAGTATTTGCATGA
326 CTAAATCTCTTGGAACTCTCTTGGTCGACTCCTCTACTCCTCAATCCCGATGAGTATTTGCATGA
44803621 ATTATGAGGGTGTGAGCTTTAAAAAGCTCAATGAGTTAATAAAAACGACTAGTAAATTAACATTA
391 ATTATGAGGGTGTGAGCTTTAAAAAGCTCAATGAGTTAATAAAAACGACTAGTAAATTAACATTA
* *
44803686 AATTCACGCTTAATTTATAACAAATCATTCACCAATTGTCAACCAAAATAATTAAACATGTCAAC
456 AATTCACGCTTAATTCATAACAAAACATTCACCAATTGTCAACCAAAATAATTAAACATGTCAAC
44803751 TTAATTTCTATAAGTATTTTCAATGCCAAAAATCATTTATTCATGGCTTTCAATCATCAATTGAT
521 TTAATTTCTATAAGTATTTTCAATGCCAAAAATCATTTATTCATGGCTTTCAATCATCAATTGAT
44803816 ATAGAAACAATCACACATAAATATATTGGCATACACTTCTCATGGCTTAATCGACTGATCATAAA
586 ATAGAAACAATCACACATAAATATATTGGCATACACTTCTCATGGCTTAATCGACTGATCATAAA
44803881 TCAAATAAACA
651 TCAAATAAACA
44803892 GATCTACGAA
Statistics
Matches: 658, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
661 658 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (661 bp):
TTCTAGTACTATAATTAGGCAATTAATTTCATGCACATCAAACACCGAATAAATCAAACAAGTGG
CATTCCTTAGTTGCTAGTAAACCACTCCATGGAAGCTTCATTTATCATTAGTAAAAATTCATGCT
TCACACATCGTGTTATCAATCAACAATACACTGTAAGTCATTTAATAATTAAACTCAAACATGCC
ACAAAATTATTATAAAACCATCCAAAATAAATGTCCAAAGTCCAATTACAACCAAAGTCAAACTA
ATTCTCGGGAGTTCGAAAATGCCTGATTACAGTCTCTAAAATGTGTAATAAAGTCTCTAGCAAGC
CTAAATCTCTTGGAACTCTCTTGGTCGACTCCTCTACTCCTCAATCCCGATGAGTATTTGCATGA
ATTATGAGGGTGTGAGCTTTAAAAAGCTCAATGAGTTAATAAAAACGACTAGTAAATTAACATTA
AATTCACGCTTAATTCATAACAAAACATTCACCAATTGTCAACCAAAATAATTAAACATGTCAAC
TTAATTTCTATAAGTATTTTCAATGCCAAAAATCATTTATTCATGGCTTTCAATCATCAATTGAT
ATAGAAACAATCACACATAAATATATTGGCATACACTTCTCATGGCTTAATCGACTGATCATAAA
TCAAATAAACA
Found at i:44805306 original size:69 final size:69
Alignment explanation
Indices: 44805214--44805348 Score: 243
Period size: 69 Copynumber: 2.0 Consensus size: 69
44805204 TATTTTTGTG
* *
44805214 TACTTTTGAGAATAATTTTAGGTGAATTGAGAGAGTATTTTGATAACAAAATTGGTTGGATCTAT
1 TACTTTTGAGAATAATTTCAGGTGAATTGAGAGAGTATTTTGAGAACAAAATTGGTTGGATCTAT
44805279 TGGC
66 TGGC
*
44805283 TACTTTTGAGAATAATTTCAGGTGAATTGAGAGGGTATTTTGAGAACAAAATTGGTTGGATCTAT
1 TACTTTTGAGAATAATTTCAGGTGAATTGAGAGAGTATTTTGAGAACAAAATTGGTTGGATCTAT
44805348 T
66 T
44805349 CTCTAATGAT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.39
Consensus pattern (69 bp):
TACTTTTGAGAATAATTTCAGGTGAATTGAGAGAGTATTTTGAGAACAAAATTGGTTGGATCTAT
TGGC
Found at i:44805325 original size:34 final size:33
Alignment explanation
Indices: 44805217--44805328 Score: 84
Period size: 34 Copynumber: 3.3 Consensus size: 33
44805207 TTTTGTGTAC
*
44805217 TTTTGAGAATAATTTTAGGTGAATTGAGAGAGTA
1 TTTTGAGAATAA-TTTAGGTGAATTGAGAGGGTA
* * * * ** *
44805251 TTTTGATAACAAAATT-GGTTGGATCT-ATTGGCTA
1 TTTTGAGAA-TAATTTAGG-TGAAT-TGAGAGGGTA
44805285 CTTTTGAGAATAATTTCAGGTGAATTGAGAGGGTA
1 -TTTTGAGAATAATTT-AGGTGAATTGAGAGGGTA
44805320 TTTTGAGAA
1 TTTTGAGAA
44805329 CAAAATTGGT
Statistics
Matches: 56, Mismatches: 15, Indels: 14
0.66 0.18 0.16
Matches are distributed among these distances:
33 2 0.04
34 32 0.57
35 20 0.36
36 2 0.04
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.38
Consensus pattern (33 bp):
TTTTGAGAATAATTTAGGTGAATTGAGAGGGTA
Found at i:44805714 original size:16 final size:16
Alignment explanation
Indices: 44805693--44805723 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
44805683 CGACCCAAAT
*
44805693 TAATTATTTTCATTAA
1 TAATTATTTTAATTAA
44805709 TAATTATTTTAATTA
1 TAATTATTTTAATTA
44805724 CTTTAAAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
TAATTATTTTAATTAA
Found at i:44809994 original size:40 final size:40
Alignment explanation
Indices: 44809950--44810030 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
44809940 TATTTGATTG
44809950 AGTAAAACTATGATTATGGTATAATTGTATTATAATTGTA
1 AGTAAAACTATGATTATGGTATAATTGTATTATAATTGTA
*
44809990 AGTAAAATTATGATTATGGTATAATTGTATTATAATTGTA
1 AGTAAAACTATGATTATGGTATAATTGTATTATAATTGTA
44810030 A
1 A
44810031 CATAACTAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.41, C:0.01, G:0.15, T:0.43
Consensus pattern (40 bp):
AGTAAAACTATGATTATGGTATAATTGTATTATAATTGTA
Found at i:44810915 original size:37 final size:37
Alignment explanation
Indices: 44810856--44810964 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
44810846 AGCTCAGACG
* *
44810856 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
44810893 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
44810930 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
44810965 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:44811227 original size:99 final size:96
Alignment explanation
Indices: 44811110--44811294 Score: 300
Period size: 99 Copynumber: 1.9 Consensus size: 96
44811100 GCACATCGCC
*
44811110 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTCACAT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATAT-TTCACAT
44811175 T-GACCATTCAGCTTTACCACATATGCATATCTCA
63 TAG-CCATTCAGCTTTACCACATATGCATATCTCA
*
44811209 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
44811274 CCATTCGGCTTTACCACATAT
66 CCATTCAGCTTTACCACATAT
44811295 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
96 28 0.34
97 8 0.10
99 46 0.56
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCAGCTTTACCACATATGCATATCTCA
Found at i:44811239 original size:48 final size:48
Alignment explanation
Indices: 44811110--44811295 Score: 293
Period size: 48 Copynumber: 3.8 Consensus size: 48
44811100 GCACATCGCC
*
44811110 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
44811160 TATATATATTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATAT-TTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
44811209 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
44811257 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
44811296 TGCATGTTCA
Statistics
Matches: 126, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
48 76 0.60
49 8 0.06
50 7 0.06
51 35 0.28
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:44811344 original size:47 final size:47
Alignment explanation
Indices: 44811265--44811458 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
44811255 CATACATATT
* * * *
44811265 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
44811312 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
44811359 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
44811406 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
44811453 TCACAT
1 TCACAT
44811459 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:44811375 original size:94 final size:94
Alignment explanation
Indices: 44811218--44811458 Score: 290
Period size: 94 Copynumber: 2.6 Consensus size: 94
44811208 ATACATATTT
* * * *
44811218 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
* *
44811280 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* ** *
44811313 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* *
44811378 TTATCACATATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
44811407 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
44811459 AAAATCCTAA
Statistics
Matches: 127, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
93 1 0.01
94 93 0.73
95 19 0.15
96 4 0.03
97 10 0.08
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:44811385 original size:22 final size:22
Alignment explanation
Indices: 44811358--44811429 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
44811348 GCTCACATTC
44811358 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
44811380 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
44811404 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
44811427 ATC
1 ATC
44811430 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:44815238 original size:31 final size:31
Alignment explanation
Indices: 44815200--44815259 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
44815190 ATACTTCCAC
44815200 TCGCTAATCCCCCATAGAAGGATTAGTTCAT
1 TCGCTAATCCCCCATAGAAGGATTAGTTCAT
44815231 TCGCTAATCCCCCATAGAAGGATTAGTTC
1 TCGCTAATCCCCCATAGAAGGATTAGTTC
44815260 GTCATGACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
TCGCTAATCCCCCATAGAAGGATTAGTTCAT
Found at i:44820385 original size:16 final size:17
Alignment explanation
Indices: 44820350--44820386 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
44820340 AAAATTTAAT
44820350 AAAATAAAACCTAAGAA
1 AAAATAAAACCTAAGAA
44820367 AAAATAAAACCTAAGAA
1 AAAATAAAACCTAAGAA
44820384 AAA
1 AAA
44820387 GGCTATCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.73, C:0.11, G:0.05, T:0.11
Consensus pattern (17 bp):
AAAATAAAACCTAAGAA
Found at i:44821376 original size:46 final size:49
Alignment explanation
Indices: 44821237--44821463 Score: 210
Period size: 46 Copynumber: 4.8 Consensus size: 49
44821227 CCACATTATG
*
44821237 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACG-
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-TGAGATGT
* *
44821285 AGAGCTC-GTGTAAGA-CATGTTTGGGACAT-GCAACGGCCT-TGAGATGT
1 AGAGC-CAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTATGAGATGT
* **
44821332 A-AGCCAGTGTAAGA-CATGTCTGGGACAT-GCGTCGGCTACAAGATGT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGT
* * *
44821378 ---GTCAGTGTAAGACCATGCCTGGGACATGGCATCGGC-ATAGATATGT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAT-GAGATGT
** *
44821424 GAGAGGTAGTGTAAGACCATGTCTGGGACATGGCGTCGGC
1 -AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
44821464 CTCGATTTCG
Statistics
Matches: 148, Mismatches: 18, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
44 11 0.07
45 17 0.11
46 59 0.40
47 15 0.10
48 13 0.09
49 1 0.01
50 32 0.22
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.22
Consensus pattern (49 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGT
Found at i:44825290 original size:26 final size:26
Alignment explanation
Indices: 44825246--44825297 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
44825236 AAGGGTTAAG
*
44825246 AAGCAAGATGTACCAAAAATCGCATT
1 AAGCAAGATGTACCAAAAACCGCATT
**
44825272 AAGCAAGATGTACTGAAAACCGCATT
1 AAGCAAGATGTACCAAAAACCGCATT
44825298 TAGGATGAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.19
Consensus pattern (26 bp):
AAGCAAGATGTACCAAAAACCGCATT
Found at i:44831277 original size:48 final size:46
Alignment explanation
Indices: 44831176--44831349 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
44831166 TTATTTGTAT
* * *
44831176 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCA-C-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCG-GCATCGA-GACGAGA
* * *
44831222 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGAGA
* * * * *
44831270 GCTAGTGTAAGACATGTCTAGGACATGTATCAGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACG-AGA
44831316 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
44831350 TACAAGATGT
Statistics
Matches: 106, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
46 55 0.52
47 28 0.26
48 22 0.21
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGA
Found at i:44831358 original size:46 final size:46
Alignment explanation
Indices: 44831171--44831395 Score: 176
Period size: 46 Copynumber: 4.8 Consensus size: 46
44831161 TCAGGTTATT
* * * **
44831171 TGTATGCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATTA
1 TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGA
* * **
44831217 TG-AGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC-ATTGAGA
1 TGTA-AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CAAGA
* * * * *
44831265 CG-AGAGCTAGTGTAAGACATGTCTAGGACATGTATCAGCCT-CGAGA
1 TGTA-AGCTAGTGTAAGACATGTCTGGGACATGCATC-GGCTACAAGA
44831311 TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGA
1 TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGA
* *
44831357 TGT--G-TCAGTGTAAGACCATGCCTAGGACATGGCATCGGC
1 TGTAAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
44831396 ACGGATATGT
Statistics
Matches: 146, Mismatches: 22, Indels: 22
0.77 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 10 0.07
45 16 0.11
46 67 0.46
47 29 0.20
48 23 0.16
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGA
Found at i:44835706 original size:98 final size:100
Alignment explanation
Indices: 44835530--44835723 Score: 277
Period size: 98 Copynumber: 2.0 Consensus size: 100
44835520 TTTGAGATTT
* *
44835530 TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCGGGTCCGGTG
1 TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCAGGTCCGATG
***
44835595 ATCGGATTGGGTAA-GGGGT-GTTACATTTATTGA
66 ATCGGACCAGGTAATGGGGTAGTTACATTTATTGA
* * *
44835628 TCTTTAATAAATTGTGTGCAGTTGTTTGGTAATTGTTCATAACATCTCATTACTCAGGTCCGATG
1 TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCAGGTCCGATG
*
44835693 A-CTGGACCAGGTAATGGGGTATTTACATTTA
66 ATC-GGACCAGGTAATGGGGTAGTTACATTTA
44835724 GAACATGCAA
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
97 1 0.01
98 69 0.82
99 5 0.06
100 9 0.11
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (100 bp):
TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCAGGTCCGATG
ATCGGACCAGGTAATGGGGTAGTTACATTTATTGA
Found at i:44837132 original size:42 final size:43
Alignment explanation
Indices: 44837067--44837148 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
44837057 TCTTCCATGT
* ** *
44837067 AATTCAATATCGATGCCTCTGTCCTAGACAGGGTCTTACACAA
1 AATTAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACAA
*
44837110 AATTAAATAT-GATGCCAATGTCCCAGACATGGTCTTACA
1 AATTAAATATCGATGCCAATGTCCCAGACAGGGTCTTACA
44837149 TGTAAATCTC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
42 25 0.74
43 9 0.26
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (43 bp):
AATTAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACAA
Found at i:44858765 original size:65 final size:65
Alignment explanation
Indices: 44858661--44858790 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
44858651 TACTTATTGC
44858661 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
1 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
44858726 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
1 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
44858791 GAGTTGTAGC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.37
Consensus pattern (65 bp):
AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
Found at i:44860619 original size:65 final size:65
Alignment explanation
Indices: 44860515--44860644 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
44860505 TACTTATTGC
44860515 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
1 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
44860580 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
1 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
44860645 GAGTTGTAGC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.37
Consensus pattern (65 bp):
AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
Found at i:44862476 original size:65 final size:65
Alignment explanation
Indices: 44862372--44862501 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
44862362 TACTTATTGC
44862372 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
1 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
44862437 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
1 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
44862502 GAGTTGTAGC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.37
Consensus pattern (65 bp):
AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
Found at i:44865125 original size:40 final size:40
Alignment explanation
Indices: 44865031--44865175 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
44865021 TACTCGAATG
* *
44865031 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
44865072 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
44865112 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
44865152 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
44865176 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:44871751 original size:19 final size:19
Alignment explanation
Indices: 44871728--44871776 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
44871718 AAATATTAAA
*
44871728 AATATTTTTTTATAATTTT
1 AATATTTTTTAATAATTTT
*
44871747 TATATTTTCTTAATAATTTT
1 AATATTTT-TTAATAATTTT
44871767 AATTATTTTT
1 AA-TATTTTT
44871777 AATTTTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 7 0.28
20 12 0.48
21 6 0.24
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
AATATTTTTTAATAATTTT
Found at i:44871778 original size:19 final size:20
Alignment explanation
Indices: 44871729--44871779 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
44871719 AATATTAAAA
44871729 ATATTTTTTT-ATAATTTTT
1 ATATTTTTTTAATAATTTTT
*
44871748 ATATTTTCTTAATAA-TTTT
1 ATATTTTTTTAATAATTTTT
44871767 A-ATTATTTTTAAT
1 ATATT-TTTTTAAT
44871780 TTTAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 3 0.11
19 21 0.75
20 4 0.14
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (20 bp):
ATATTTTTTTAATAATTTTT
Found at i:44871993 original size:16 final size:17
Alignment explanation
Indices: 44871952--44871993 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
44871942 AAAAAAATAC
44871952 AAATTAAAAGATTAAAT
1 AAATTAAAAGATTAAAT
**
44871969 AAACGAAAA-ATTAAAT
1 AAATTAAAAGATTAAAT
*
44871985 AGATTAAAA
1 AAATTAAAA
44871994 TAACTTTTTT
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (17 bp):
AAATTAAAAGATTAAAT
Found at i:44873337 original size:10 final size:10
Alignment explanation
Indices: 44873322--44873346 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
44873312 AATAAAAATA
44873322 ATTATTTATT
1 ATTATTTATT
44873332 ATTATTTATT
1 ATTATTTATT
44873342 ATTAT
1 ATTAT
44873347 ATAAAATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTATTTATT
Found at i:44874096 original size:30 final size:30
Alignment explanation
Indices: 44874029--44874088 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
44874019 TTATCATTTG
* *
44874029 AAAAAAATAAAAAATATATATAAATTCCAA
1 AAAAAAATAAAAAATATATATAAACTCAAA
*
44874059 AAAAAAATTAAAAATATATA-AAACT-AAA
1 AAAAAAATAAAAAATATATATAAACTCAAA
44874087 AA
1 AA
44874089 GTAAAAATCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 4 0.15
29 4 0.15
30 19 0.70
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (30 bp):
AAAAAAATAAAAAATATATATAAACTCAAA
Found at i:44875265 original size:11 final size:11
Alignment explanation
Indices: 44875251--44875286 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
44875241 AATTATAATA
44875251 AAATATTTTTT
1 AAATATTTTTT
44875262 AAATATTTTTT
1 AAATATTTTTT
* *
44875273 TAAGATTTTTT
1 AAATATTTTTT
44875284 AAA
1 AAA
44875287 ATTAATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (11 bp):
AAATATTTTTT
Found at i:44877623 original size:46 final size:46
Alignment explanation
Indices: 44877580--44877694 Score: 144
Period size: 46 Copynumber: 2.5 Consensus size: 46
44877570 TCATCTCGTA
* *
44877580 GCCGATGCATGTTCCAGACATGTCTTACACTAGC-TTACGTCTCGAG
1 GCCGATGCATGTTCCAGACATGTCTTACACCAGCACT-CGTCTCGAG
* *
44877626 GCCGATGCATG-TCCCGAACATGTCTTACACCAGCACTCGTCTCGAT
1 GCCGATGCATGTTCCAG-ACATGTCTTACACCAGCACTCGTCTCGAG
*
44877672 GCCGATGCCATGTCCCAGACATG
1 GCCGATG-CATGTTCCAGACATG
44877695 GTTTTATACA
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
45 4 0.07
46 42 0.71
47 10 0.17
48 3 0.05
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (46 bp):
GCCGATGCATGTTCCAGACATGTCTTACACCAGCACTCGTCTCGAG
Found at i:44880571 original size:18 final size:18
Alignment explanation
Indices: 44880548--44880583 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
44880538 TTCTTGGGTG
44880548 ATAATCAATTATTAGCTC
1 ATAATCAATTATTAGCTC
**
44880566 ATAATCTTTTATTAGCTC
1 ATAATCAATTATTAGCTC
44880584 TGGCCACCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.06, T:0.44
Consensus pattern (18 bp):
ATAATCAATTATTAGCTC
Found at i:44890035 original size:30 final size:30
Alignment explanation
Indices: 44890001--44890059 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
44889991 GGACAGAGAC
** *
44890001 ACGGGAGTGTGTCTCAGCCGTGTATGACAT
1 ACGGGAGCATGTCTCAACCGTGTATGACAT
*
44890031 ACGGGAGCATGTTTCAACCGTGTATGACA
1 ACGGGAGCATGTCTCAACCGTGTATGACA
44890060 CACATTAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (30 bp):
ACGGGAGCATGTCTCAACCGTGTATGACAT
Found at i:44891387 original size:36 final size:36
Alignment explanation
Indices: 44891340--44891413 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
44891330 CACTGAGTAC
44891340 GAAAGAGAATTCTTACGATTAAACAAATACGCTCGG
1 GAAAGAGAATTCTTACGATTAAACAAATACGCTCGG
*
44891376 GAAAGAGAATTCTTACGATTAAACAAATATGCTCGG
1 GAAAGAGAATTCTTACGATTAAACAAATACGCTCGG
44891412 GA
1 GA
44891414 GTATGTATCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (36 bp):
GAAAGAGAATTCTTACGATTAAACAAATACGCTCGG
Found at i:44912144 original size:55 final size:55
Alignment explanation
Indices: 44912029--44912145 Score: 144
Period size: 55 Copynumber: 2.1 Consensus size: 55
44912019 GTGATATGGT
* * * * *
44912029 CGTGGTCGAGCCTACCAAAACAACACGGGCGTGCAACATGCCCATGTGGAAGAAC
1 CGTGGTCGAGCCTACCAAAACAACACAGGCATGCAACACGCCCATGTGAAACAAC
* * * * *
44912084 TGTGGTCGAGCCTACCAAAACAACACAGGCATTCGACACGCCCGTGTGAAACACC
1 CGTGGTCGAGCCTACCAAAACAACACAGGCATGCAACACGCCCATGTGAAACAAC
44912139 CGTGGTC
1 CGTGGTC
44912146 TAACCTGTTA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.29, C:0.31, G:0.26, T:0.15
Consensus pattern (55 bp):
CGTGGTCGAGCCTACCAAAACAACACAGGCATGCAACACGCCCATGTGAAACAAC
Found at i:44918504 original size:9 final size:9
Alignment explanation
Indices: 44918490--44918518 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
44918480 TATCTCTTAA
44918490 CATATGACT
1 CATATGACT
44918499 CATATGACT
1 CATATGACT
44918508 CATATGA-T
1 CATATGACT
44918516 CAT
1 CAT
44918519 TTTGTTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.20
9 16 0.80
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (9 bp):
CATATGACT
Found at i:44919434 original size:40 final size:40
Alignment explanation
Indices: 44919389--44919567 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
44919379 CACTTGAATA
*
44919389 CCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
* *
44919429 GCTTCGAGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
44919469 CCTTCGGGACTTAGCCCGGATA-TGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
* * *
44919509 CCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
44919549 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
44919568 TTATCATCCA
Statistics
Matches: 126, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.02
40 123 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:44919497 original size:80 final size:80
Alignment explanation
Indices: 44919389--44919567 Score: 295
Period size: 80 Copynumber: 2.2 Consensus size: 80
44919379 CACTTGAATA
* *
44919389 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGGCTTCGAGACTTAGCCCGGAACTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGAACTAG
*
44919454 TAACTCGCACAAATG
66 TAACTAGCACAAATG
* *
44919469 CCTTCGGGACTTAGCCCGGATATGGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGAACTAG
* *
44919534 TCACTAGCGCAAATG
66 TAACTAGCACAAATG
44919549 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
44919568 TTATCATCCA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 92 1.00
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.21
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGAACTAG
TAACTAGCACAAATG
Found at i:44927723 original size:39 final size:40
Alignment explanation
Indices: 44927605--44927781 Score: 272
Period size: 40 Copynumber: 4.5 Consensus size: 40
44927595 CACTCGAATA
*
44927605 CCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
44927645 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
44927685 CCTTCGGGACTTAGCCCGG-A-TATGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTA-GTAACTCGCACAAATG
* * *
44927724 CCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
44927764 CCTTC-GGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
44927782 TTATCATCCA
Statistics
Matches: 129, Mismatches: 4, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
38 2 0.02
39 50 0.39
40 75 0.58
41 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:44927725 original size:79 final size:80
Alignment explanation
Indices: 44927605--44927781 Score: 304
Period size: 79 Copynumber: 2.2 Consensus size: 80
44927595 CACTCGAATA
*
44927605 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
*
44927670 TAACTCGCACAAATG
66 TAACTAGCACAAATG
44927685 CCTTCGGGACTTAGCCCGGATAT-GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
* *
44927749 TCACTAGCGCAAATG
66 TAACTAGCACAAATG
44927764 CCTTC-GGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
44927782 TTATCATCCA
Statistics
Matches: 93, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
78 13 0.14
79 58 0.62
80 22 0.24
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
TAACTAGCACAAATG
Found at i:44935309 original size:83 final size:82
Alignment explanation
Indices: 44935158--44935311 Score: 183
Period size: 83 Copynumber: 1.9 Consensus size: 82
44935148 CCGGATATAG
* * *
44935158 AACTCGCACAAATGGCTTCGAGACTTTGCCCGGAACTAGTACGTCGCACAACATGCCTTTCGGAC
1 AACTCGCACAAATGCCTTCGAGACTTTGCCCGGAACTAGTACGTAGCACAACATGCCATTCGGAC
44935223 TTAGCCGCGGCTATGGT
66 TTAGCCGCGGCTATGGT
*
44935240 AACTCGCACAAAATGCCTTTCG-GACTTTAGCCC-G-ACTAGTCAC-TAGCGCAA-ATGCCATTC
1 AACTCGCAC-AAATGCC-TTCGAGACTTT-GCCCGGAACTAGT-ACGTAGCACAACATGCCATTC
44935300 GGCGACTTAGCC
62 -G-GACTTAGCC
44935312 CGGTTATCAT
Statistics
Matches: 62, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
81 8 0.13
82 22 0.35
83 24 0.39
84 8 0.13
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.23
Consensus pattern (82 bp):
AACTCGCACAAATGCCTTCGAGACTTTGCCCGGAACTAGTACGTAGCACAACATGCCATTCGGAC
TTAGCCGCGGCTATGGT
Found at i:44943742 original size:38 final size:38
Alignment explanation
Indices: 44943679--44943763 Score: 102
Period size: 38 Copynumber: 2.2 Consensus size: 38
44943669 TGCTCGGCGA
44943679 ACTTAGCCCGCAATAGTAACTTCGCAC-ATGCCTTCGG
1 ACTTAGCCCGCAATAGTAACTTCGCACAATGCCTTCGG
* * *
44943716 ACTTTAGCCCGGATATGGTAAC-TCGCACAAATGCCTTGGG
1 AC-TTAGCCCGCA-ATAGTAACTTCGCAC-AATGCCTTCGG
44943756 ACTTAGCC
1 ACTTAGCC
44943764 GGACTAGTCA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
37 2 0.05
38 15 0.37
39 13 0.32
40 11 0.27
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (38 bp):
ACTTAGCCCGCAATAGTAACTTCGCACAATGCCTTCGG
Found at i:44949747 original size:36 final size:36
Alignment explanation
Indices: 44949688--44949764 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
44949678 TTATTACGAA
* *
44949688 GTCTTACCCGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGACAAAATCTCCACACGAAGTCATCGG
*
44949724 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCC-GACAAAATCTCCACACGAAGTCATCGG
44949760 GTCTT
1 GTCTT
44949765 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 29 0.78
37 8 0.22
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (36 bp):
GTCTTACCCGACAAAATCTCCACACGAAGTCATCGG
Found at i:44950073 original size:47 final size:47
Alignment explanation
Indices: 44949937--44950295 Score: 660
Period size: 47 Copynumber: 7.8 Consensus size: 47
44949927 GGCCCTCGGC
44949937 CCTT-TCACATATATACAC-TTCACATTCATCACATCGGCC-TTAGG
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
44949981 CCTTATCACATATATACAC-TTCACATTCATCACATCGG-CATTAGG
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
44950026 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
44950073 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-G
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
44950119 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
44950166 CCTTATCACATATATTACACTTTCACATTCATCACATCGGCCATTAGG
1 CCTTATCACATATA-TACACTTTCACATTCATCACATCGGCCATTAGG
44950214 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
44950261 CCTTATCACATATATACACTTTCACA-TCATCACAT
1 CCTTATCACATATATACACTTTCACATTCATCACAT
44950296 AGAATCCTAA
Statistics
Matches: 309, Mismatches: 0, Indels: 10
0.97 0.00 0.03
Matches are distributed among these distances:
44 5 0.02
45 57 0.18
46 74 0.24
47 126 0.41
48 47 0.15
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
Found at i:44950128 original size:93 final size:94
Alignment explanation
Indices: 44949937--44950295 Score: 660
Period size: 93 Copynumber: 3.9 Consensus size: 94
44949927 GGCCCTCGGC
44949937 CCTT-TCACATATATACAC-TTCACATTCATCACATCGGCC-TTAGGCCTTATCACATATATACA
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
44949999 C-TTCACATTCATCACATCGG-CATTAGG
66 CTTTCACATTCATCACATCGGCCATTAGG
44950026 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
44950091 CTTTCACATTCATCACATCGGCCATTA-G
66 CTTTCACATTCATCACATCGGCCATTAGG
44950119 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTAC
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA-TAC
44950184 ACTTTCACATTCATCACATCGGCCATTAGG
65 ACTTTCACATTCATCACATCGGCCATTAGG
44950214 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
44950279 CTTTCACA-TCATCACAT
66 CTTTCACATTCATCACAT
44950296 AGAATCCTAA
Statistics
Matches: 263, Mismatches: 0, Indels: 10
0.96 0.00 0.04
Matches are distributed among these distances:
89 4 0.02
90 14 0.05
91 21 0.08
92 24 0.09
93 90 0.34
94 48 0.18
95 62 0.24
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGG
Found at i:44953204 original size:40 final size:38
Alignment explanation
Indices: 44953147--44953384 Score: 151
Period size: 40 Copynumber: 6.0 Consensus size: 38
44953137 CGAATACACG
* * *
44953147 TCACCAGCATGATTGCTCTTCGTGACCTAGCCTGGATATA
1 TCACCAGCACGAATGCTCTTCG-GACTTAGCC-GGATATA
* **
44953187 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTC-GGACTTAGC-CGGATATA
* *
44953227 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGG-ACTTAG-CCGGATATA
* * *
44953267 TCACTAGCACAAATGCTCTTCGGAACTTAGCCCGGTTATA
1 TCACCAGCACGAATGCTCTTCGG-ACTTAG-CCGGATATA
* * * *
44953307 GTAACTC-GCACAAATGC-CTTCGGGACTTAACCCGGATTTA
1 -TCAC-CAGCACGAATGCTCTTC-GGACTT-AGCCGGATATA
* * *
44953347 GTAACTC-GCACCAATGC-CTTCGGGCTTAGTCCGGATAT
1 -TCAC-CAGCACGAATGCTCTTCGGACTTAG-CCGGATAT
44953385 GGTCACTTAG
Statistics
Matches: 166, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.01
39 14 0.08
40 132 0.80
41 19 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (38 bp):
TCACCAGCACGAATGCTCTTCGGACTTAGCCGGATATA
Found at i:44953297 original size:80 final size:76
Alignment explanation
Indices: 44953164--44953420 Score: 219
Period size: 80 Copynumber: 3.2 Consensus size: 76
44953154 CATGATTGCT
* * * * * * *
44953164 CTTCGTGACCTAGCCTGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATATC
1 CTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGCTCTTC-GGGCTTAGC-CGGATATATC
44953229 ACTAGCACGAATGC
64 ACTAGCAC-AATGC
* * * *
44953243 TCTTCGGAACTTAGCCCGGATACATCACTAGCACAAATGCTCTTCGGAACTTAGCCCGGTTATAG
1 -CTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGCTCTTCGG-GCTTAG-CCGGATATA-
* *
44953308 TAACTCGCACAAATGC
62 TCACTAGCAC-AATGC
* * * * * *
44953324 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGC-CTTCGGGCTTAGTCCGGATATGGT
1 CTTCGGGACTTAGCCCGGATATA-TCACTAGCACAAATGCTCTTCGGGCTTAG-CCGGATAT-AT
*
44953388 CACTTAGCACAAAGC
63 CAC-TAGCACAATGC
44953403 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
44953421 GCATCATTCG
Statistics
Matches: 142, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
79 38 0.27
80 77 0.54
81 27 0.19
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (76 bp):
CTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGCTCTTCGGGCTTAGCCGGATATATCAC
TAGCACAATGC
Found at i:44955318 original size:37 final size:37
Alignment explanation
Indices: 44955268--44955346 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
44955258 TTATTACGAA
* * *
44955268 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
44955305 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
44955342 GTCTT
1 GTCTT
44955347 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:44955540 original size:47 final size:47
Alignment explanation
Indices: 44955462--44956076 Score: 749
Period size: 47 Copynumber: 12.7 Consensus size: 47
44955452 CCCTTCGGGA
* * * * * *
44955462 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44955509 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44955556 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** *
44955603 CTTATCACATATATACACTTTCACATTCATTACA-CTTTCACATTCA-TC
1 CTTATCACATATATACACTTTCACATTCATCACATC-GGC-CATT-AGGC
* ** ** **
44955651 AC--ATCGGCCAT-TAGGC-CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 -CTTATC--ACATATATACACTT-TCAC--AT-T-CA---TCACA-TCGGC-CAT---TA----G
44955712 GC
46 GC
44955714 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44955761 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44955808 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44955855 CTTATCACATATATACACTTTCACATT-ATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44955901 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44955948 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44955995 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44956042 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
44956077 AGAATCCTAA
Statistics
Matches: 502, Mismatches: 37, Indels: 58
0.84 0.06 0.10
Matches are distributed among these distances:
46 46 0.09
47 389 0.77
48 12 0.02
49 5 0.01
50 2 0.00
51 1 0.00
52 2 0.00
54 3 0.01
55 7 0.01
56 11 0.02
57 1 0.00
59 2 0.00
60 1 0.00
61 2 0.00
62 4 0.01
63 8 0.02
64 6 0.01
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:44955638 original size:17 final size:17
Alignment explanation
Indices: 44955616--44955649 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
44955606 ATCACATATA
44955616 TACACTTTCACATTCAT
1 TACACTTTCACATTCAT
44955633 TACACTTTCACATTCAT
1 TACACTTTCACATTCAT
44955650 CACATCGGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.41
Consensus pattern (17 bp):
TACACTTTCACATTCAT
Found at i:44955646 original size:64 final size:64
Alignment explanation
Indices: 44955569--44955696 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
44955559 ATCACATATA
44955569 TACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 TACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTTTCACATTCAT
*
44955633 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 TACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTTTCACATTCAT
44955697 CACATCGGCC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.34
Consensus pattern (64 bp):
TACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTTTCACATTCAT
Found at i:44955659 original size:111 final size:111
Alignment explanation
Indices: 44955522--44955743 Score: 435
Period size: 111 Copynumber: 2.0 Consensus size: 111
44955512 GTCACATATA
44955522 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
44955587 ACATCGACCATTAGGCCTTATCACATATATACACTTTCACATTCAT
66 ACATCGACCATTAGGCCTTATCACATATATACACTTTCACATTCAT
44955633 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
*
44955698 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
66 ACATCGACCATTAGGCCTTATCACATATATACACTTTCACATTCAT
44955744 CACATCGGCC
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 110 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (111 bp):
TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
ACATCGACCATTAGGCCTTATCACATATATACACTTTCACATTCAT
Found at i:44955763 original size:158 final size:158
Alignment explanation
Indices: 44955461--44955790 Score: 563
Period size: 158 Copynumber: 2.1 Consensus size: 158
44955451 GCCCTTCGGG
* * * * *
44955461 ACTTATCACATTTA-TACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 ACTT-TCACATTCATTACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
44955525 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
44955590 TCGACCATTAGGCCTTATCACATATATAC
130 TCGACCATTAGGCCTTATCACATATATAC
* * *
44955619 ACTTTCACATTCATTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 ACTTTCACATTCATTACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACA
44955684 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
*
44955749 CGGCCATTAGGCCTTATCACATATATAC
131 CGACCATTAGGCCTTATCACATATATAC
44955777 ACTTTCACATTCAT
1 ACTTTCACATTCAT
44955791 CACATCGGCT
Statistics
Matches: 162, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
157 8 0.05
158 154 0.95
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (158 bp):
ACTTTCACATTCATTACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGACCATTAGGCCTTATCACATATATAC
Found at i:44955903 original size:234 final size:235
Alignment explanation
Indices: 44955633--44956076 Score: 863
Period size: 234 Copynumber: 1.9 Consensus size: 235
44955623 TCACATTCAT
44955633 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
44955698 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
66 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
44955763 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTT
131 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTT
44955828 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATA
196 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATA
44955868 TACACTTTCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
* *
44955932 ACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCT
66 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
44955997 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTT
131 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTT
44956062 TCACATTCATCACAT
196 TCACATTCATCACAT
44956077 AGAATCCTAA
Statistics
Matches: 207, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
234 193 0.93
235 14 0.07
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (235 bp):
TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTT
TCACATTCATCACATCGGCTATTAGGCCTTATCACATATA
Found at i:44968602 original size:35 final size:35
Alignment explanation
Indices: 44968556--44968626 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
44968546 CTCGAAATCT
44968556 CGTAAAGGTTGGAGACCGGTCAGAGCATCATCACA
1 CGTAAAGGTTGGAGACCGGTCAGAGCATCATCACA
*
44968591 CGTAAAGGTTGGAGACCGGTCGGAGCATCATCACA
1 CGTAAAGGTTGGAGACCGGTCAGAGCATCATCACA
44968626 C
1 C
44968627 TATCTCCAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.30, C:0.24, G:0.30, T:0.17
Consensus pattern (35 bp):
CGTAAAGGTTGGAGACCGGTCAGAGCATCATCACA
Found at i:44984604 original size:77 final size:71
Alignment explanation
Indices: 44984417--44984605 Score: 227
Period size: 71 Copynumber: 2.6 Consensus size: 71
44984407 GGGGAATCAT
* * * *
44984417 CACTTAGCAACCCCTCGGGGGAATCAGCACATAACAACCCCCTTTTCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATACAATGG
44984482 ATATCG
66 ATATCG
* ***
44984488 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATACAATG
44984553 GATATCG
65 GATATCG
*
44984560 CACTTAGC-ACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCC
1 CACTTAGCAACC-CC--T---CCGGGGAATCAGCACATAGCAACCCC
44984606 TCGGGGAATC
Statistics
Matches: 103, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
71 47 0.46
72 31 0.30
74 1 0.01
77 24 0.23
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (71 bp):
CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATACAATGG
ATATCG
Found at i:44984611 original size:26 final size:26
Alignment explanation
Indices: 44984581--44984631 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
44984571 ACCAATGAAC
*
44984581 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
44984607 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
44984632 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:44984671 original size:103 final size:104
Alignment explanation
Indices: 44984487--44984709 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
44984477 AATGGATATC
44984487 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
44984552 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
44984591 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
44984655 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
44984694 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
44984710 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 94 0.84
104 18 0.16
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:44985071 original size:29 final size:29
Alignment explanation
Indices: 44985038--44985101 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
44985028 TAATCCACCA
44985038 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
44985067 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
44985097 CCCAA
1 CCCAA
44985102 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:44985075 original size:30 final size:30
Alignment explanation
Indices: 44985045--44985101 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
44985035 CCACCCAACT
44985045 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
44985074 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
44985102 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:44991978 original size:26 final size:26
Alignment explanation
Indices: 44991942--44991994 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
44991932 CACCACTGAA
* *
44991942 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
44991968 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
44991994 T
1 T
44991995 TTTCATTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.34, G:0.21, T:0.17
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:44992068 original size:69 final size:70
Alignment explanation
Indices: 44991954--44992138 Score: 223
Period size: 69 Copynumber: 2.6 Consensus size: 70
44991944 GGGGAATCAT
* *
44991954 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAA-CCCCTTTTCATTTCAAATATACAATGGA
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATACAATGGA
44992018 TATCG
66 TATCG
***
44992023 CACTTAGCAA-CCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATACAATG
44992087 GATATCG
64 GATATCG
*
44992094 CACTTAGC-ACCACCAATGAACGGGGAATCAGCACTTAGCAACCCC
1 CACTTAGCAACC-CC--T---CGGGGAATCAGCACATAGCAACCCC
44992139 TCGGGGAATA
Statistics
Matches: 100, Mismatches: 6, Indels: 13
0.84 0.05 0.11
Matches are distributed among these distances:
68 5 0.05
69 30 0.30
70 8 0.08
71 30 0.30
72 2 0.02
74 1 0.01
76 23 0.23
77 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.21
Consensus pattern (70 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAAGATACAATGGA
TATCG
Found at i:44992157 original size:25 final size:26
Alignment explanation
Indices: 44992114--44992164 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
44992104 CACCAATGAA
*
44992114 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
44992140 CGGGGAAT-AGCACATAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
44992165 TTCACATTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.29, C:0.33, G:0.24, T:0.14
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:44992202 original size:100 final size:104
Alignment explanation
Indices: 44992022--44992240 Score: 342
Period size: 100 Copynumber: 2.2 Consensus size: 104
44992012 AATGGATATC
44992022 GCACTTAGCAA-CCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
44992086 GGATATCGCACTTAGCACCACCAATGAA-CGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAATCGGGGAATCA
44992124 GCACTTAGCAACCCCTC-GGGGAAT-AGCACATAGCAA-CCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
*
44992186 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAATCGGGGAATCA
**
44992225 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
44992241 TTTATATACA
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
100 49 0.45
101 37 0.34
102 18 0.17
103 5 0.05
ACGTcount: A:0.32, C:0.31, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAATCGGGGAATCA
Found at i:44997457 original size:27 final size:27
Alignment explanation
Indices: 44997420--44997569 Score: 108
Period size: 27 Copynumber: 5.4 Consensus size: 27
44997410 AATTGTGACA
*
44997420 GCACTTAAGTGTGCGATTTGACTATGTT
1 GCAC-TAAGTGTGCGATTTGACTATGTG
** *
44997448 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * * * *
44997475 GCCCTAAGTGTGCGAATTGCCCATAGCG
1 GCACTAAGTGTGCGATTTGACTAT-GTG
*
44997503 GC-CTAAGTGTGCCAGTTTGACTATGTACG
1 GCACTAAGTGTGCGA-TTTGACTATGT--G
* * *
44997532 GCACTAAGTGTGCGATTT-ATTACGTA
1 GCACTAAGTGTGCGATTTGACTATGTG
44997558 GCACTAAGTGTG
1 GCACTAAGTGTG
44997570 TGAGTTGATT
Statistics
Matches: 97, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
26 12 0.12
27 49 0.51
28 19 0.20
29 6 0.06
30 11 0.11
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:45016268 original size:106 final size:106
Alignment explanation
Indices: 45016064--45016283 Score: 256
Period size: 106 Copynumber: 2.1 Consensus size: 106
45016054 TCGCACTTAG
45016064 AACCCCTTCGGGGGGAATCAGCACATAGCAACCCCCTTCCACATTTCAAAGAATATTGGTGGATA
1 AACCCC-TCGGGGGGAATCAGCACATAGCAACCCCCTTCCACATTTCAAAGAATATTGGTGGATA
* * *
45016129 TCGCACTTAAGCACCACCAATGAACGGGCATCAG-CACTAGCAA
65 TCGCACATAAGCACCACCAATAAACGGGAATCAGCCAC-AGC-A
* * *
45016172 AACCCCTC-GGGGGAATCAGCACTTAAGCAA-CCCCTTTCACATTTCAAAG-ATTTATGGTGGAT
1 AACCCCTCGGGGGGAATCAGCACAT-AGCAACCCCCTTCCACATTTCAAAGAATAT-TGGTGGAT
*
45016234 CA-CGCACAT-AGGACCACC-ATAAATCGGGGAATCAGCCACAGCA
64 -ATCGCACATAAGCACCACCAATAAA-C-GGGAATCAGCCACAGCA
45016277 AACCCCT
1 AACCCCT
45016284 TGTTATATAC
Statistics
Matches: 99, Mismatches: 7, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
104 4 0.04
105 20 0.20
106 58 0.59
107 11 0.11
108 6 0.06
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (106 bp):
AACCCCTCGGGGGGAATCAGCACATAGCAACCCCCTTCCACATTTCAAAGAATATTGGTGGATAT
CGCACATAAGCACCACCAATAAACGGGAATCAGCCACAGCA
Found at i:45023954 original size:26 final size:27
Alignment explanation
Indices: 45023918--45023969 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
45023908 ACCAATGAAC
*
45023918 CGGGGAATCAGCA-CTTAGCAACCCCT
1 CGGGGAATCAGCACCATAGCAACCCCT
45023944 CGGGGAATCAGCACCATAGCAACCCC
1 CGGGGAATCAGCACCATAGCAACCCC
45023970 CTTTCACTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.29, C:0.37, G:0.23, T:0.12
Consensus pattern (27 bp):
CGGGGAATCAGCACCATAGCAACCCCT
Found at i:45024205 original size:11 final size:11
Alignment explanation
Indices: 45024189--45024213 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
45024179 ATCCAACATT
45024189 ATATCAAAATA
1 ATATCAAAATA
45024200 ATATCAAAATA
1 ATATCAAAATA
45024211 ATA
1 ATA
45024214 CATTAGTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
ATATCAAAATA
Found at i:45027065 original size:27 final size:27
Alignment explanation
Indices: 45027034--45027211 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
45027024 TAAATTGTAC
45027034 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
45027061 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45027087 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
45027115 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
45027143 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45027170 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
45027197 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45027212 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:45027148 original size:82 final size:81
Alignment explanation
Indices: 45027035--45027190 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
45027025 AAATTGTACA
* *
45027035 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
45027099 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
45027116 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
45027181 TGCGAGTTGA
65 TGCGAATTGA
45027191 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:45027202 original size:82 final size:81
Alignment explanation
Indices: 45027031--45027211 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
45027021 GATTAAATTG
* *
45027031 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
45027096 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
45027112 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
45027176 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
45027194 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
45027212 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:45035235 original size:27 final size:27
Alignment explanation
Indices: 45035204--45035380 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
45035194 TAAATTGTAC
45035204 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
45035231 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45035257 ATGC-CTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
45035284 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
45035312 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45035339 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
45035366 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45035381 GACTCAATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
26 21 0.17
27 83 0.65
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:45035267 original size:53 final size:55
Alignment explanation
Indices: 45035204--45035380 Score: 191
Period size: 53 Copynumber: 3.3 Consensus size: 55
45035194 TAAATTGTAC
*
45035204 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGA-AATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGT
* * ** ** *
45035257 ATGC-CTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGT
* * * * *
45035312 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGT
*
45035366 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45035381 GACTCAATAT
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
53 36 0.35
54 33 0.32
55 35 0.34
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGT
Found at i:45041858 original size:21 final size:21
Alignment explanation
Indices: 45041811--45041863 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
45041801 TGCAAGGCAT
*
45041811 ACACGCCCGTGTGGTCCAGGG
1 ACACGCCCGTGTGGTCCAGAG
*
45041832 AGACGCCCGTGTGGTCCTA-AG
1 ACACGCCCGTGTGGTCC-AGAG
45041853 ACACGCCCGTG
1 ACACGCCCGTG
45041864 CTGCAGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.17, C:0.34, G:0.34, T:0.15
Consensus pattern (21 bp):
ACACGCCCGTGTGGTCCAGAG
Found at i:45052744 original size:37 final size:37
Alignment explanation
Indices: 45052601--45052746 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
45052591 AGCTCAGACG
* * * *
45052601 AAATCTCCACATGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
45052638 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
45052675 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
45052712 TAATCTCCACATGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
45052747 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:45053017 original size:47 final size:47
Alignment explanation
Indices: 45052955--45053343 Score: 526
Period size: 47 Copynumber: 8.1 Consensus size: 47
45052945 ACACGTTTCG
* * * *
45052955 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
45053002 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
45053049 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
45053096 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * *
45053143 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATATGCATGTTCACATTCATCA
* * *
45053196 CATTGGCCATTCGGCCTTATCACGCATACGTATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
**
45053243 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCAT----GTTCACATTCATCA
* *
45053294 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
45053341 CAT
1 CAT
45053344 AAAATCCTAA
Statistics
Matches: 308, Mismatches: 24, Indels: 20
0.88 0.07 0.06
Matches are distributed among these distances:
47 220 0.71
49 1 0.00
51 45 0.15
53 42 0.14
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:45053231 original size:100 final size:98
Alignment explanation
Indices: 45052955--45053343 Score: 587
Period size: 94 Copynumber: 4.0 Consensus size: 98
45052945 ACACGTTTCG
* *
45052955 CATTAGCCATTCGGCCTTA-C-CACATATAT-T-CATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* * *
45053016 CCTTATCTCATATATGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
** *
45053049 CATTGGCCATTCGGCCTTATCACAC----ATACGCATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
45053110 CCTTATCACACATACGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
*
45053143 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCA--CACATATATATACAGGTTCACATTCATCACATTGGCCATTC
* *
45053208 GGCCTTATCACGCATACGTATGTTCACATTCATCA
64 GGCCTTATCACACATACGCATGTTCACATTCATCA
*
45053243 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
45053308 CCTTATCACACATACGCATGTTCACATCCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
45053341 CAT
1 CAT
45053344 AAAATCCTAA
Statistics
Matches: 269, Mismatches: 16, Indels: 16
0.89 0.05 0.05
Matches are distributed among these distances:
92 2 0.01
94 101 0.38
95 1 0.00
96 5 0.02
98 74 0.28
100 86 0.32
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.32
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATACGCATGTTCACATTCATCA
Found at i:45053235 original size:147 final size:146
Alignment explanation
Indices: 45052955--45053322 Score: 539
Period size: 147 Copynumber: 2.5 Consensus size: 146
45052945 ACACGTTTCG
* * * *
45052955 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
45053020 AT---C-T-CATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGC
66 ATCACCATACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGC
45053080 ATGTTCACATTCATCA
131 ATGTTCACATTCATCA
**
45053096 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
45053161 ATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATACG
66 ATCAC-CATACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
*
45053226 TATGTTCACATTCATCA
130 CATGTTCACATTCATCA
*
45053243 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATACAT----GTTCACATTCATCACATTGGCCATTCGG
45053308 CCTTATCACACATAC
62 CCTTATCAC-CATAC
45053323 GCATGTTCAC
Statistics
Matches: 202, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
141 62 0.31
145 1 0.00
146 1 0.00
147 97 0.48
151 41 0.20
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.32
Consensus pattern (146 bp):
CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACCATACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGC
ATGTTCACATTCATCA
Found at i:45055411 original size:85 final size:85
Alignment explanation
Indices: 45055282--45055460 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
45055272 TATTTTATTG
*
45055282 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
45055347 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
45055367 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
45055432 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
45055452 CCCATGCTC
1 CCCATGCTC
45055461 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:45059108 original size:31 final size:30
Alignment explanation
Indices: 45059073--45059134 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
45059063 TCTTTACTAC
*
45059073 AAACTTTGGAAAAATTACATTTTTTGCCCCT
1 AAACTTTGGAAAAATTACA-CTTTTGCCCCT
* * *
45059104 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
45059134 A
1 A
45059135 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 11 0.41
31 16 0.59
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:45060364 original size:43 final size:43
Alignment explanation
Indices: 45060304--45060417 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
45060294 TCGATGCCAC
* *
45060304 TGTCCCAGGC-TGAGTCTTACATGAAATCGATT-A-ACAATACCAA
1 TGTCCCAGACATG-GTCTTACATGTAATC--TTAATACAATACCAA
* * *
45060347 TGTCTCAGACATGGTCTTACACGTAATCTTAATACAATTCCAA
1 TGTCCCAGACATGGTCTTACATGTAATCTTAATACAATACCAA
45060390 TGTCCCAGACATGGTCTTACATGTAATC
1 TGTCCCAGACATGGTCTTACATGTAATC
45060418 ACATCTCGGT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
41 2 0.03
42 1 0.02
43 56 0.92
44 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.30
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACATGTAATCTTAATACAATACCAA
Found at i:45060561 original size:36 final size:36
Alignment explanation
Indices: 45060521--45060593 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
45060511 GCTTGTATTT
*
45060521 ACTCGTTCCACGTTCATAGTAATTCAATCATAATTA
1 ACTCGTTCCACATTCATAGTAATTCAATCATAATTA
45060557 ACTCGTTCCACATTCATAGTAATTCAATCATAATTA
1 ACTCGTTCCACATTCATAGTAATTCAATCATAATTA
45060593 A
1 A
45060594 ACACATAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.36
Consensus pattern (36 bp):
ACTCGTTCCACATTCATAGTAATTCAATCATAATTA
Found at i:45062787 original size:40 final size:40
Alignment explanation
Indices: 45062732--45062815 Score: 159
Period size: 40 Copynumber: 2.1 Consensus size: 40
45062722 CCCGAAACAA
*
45062732 AATCCATAATCACTCTATCCTATTTCCACTCGGGGATCAT
1 AATCCATAATCACTCTATCCCATTTCCACTCGGGGATCAT
45062772 AATCCATAATCACTCTATCCCATTTCCACTCGGGGATCAT
1 AATCCATAATCACTCTATCCCATTTCCACTCGGGGATCAT
45062812 AATC
1 AATC
45062816 GACTGCAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (40 bp):
AATCCATAATCACTCTATCCCATTTCCACTCGGGGATCAT
Found at i:45065934 original size:50 final size:50
Alignment explanation
Indices: 45065810--45066058 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
45065800 GATAATAACA
* * ** * *
45065810 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
45065861 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
45065911 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
45065961 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
45066016 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
45066059 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:45065988 original size:100 final size:104
Alignment explanation
Indices: 45065809--45066058 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
45065799 TGATAATAAC
**
45065809 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
45065874 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
45065911 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
45065974 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
45066016 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
45066059 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:45066174 original size:13 final size:13
Alignment explanation
Indices: 45066153--45066184 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
45066143 GCTTGGATCA
*
45066153 TCATCAAATAAAT
1 TCATAAAATAAAT
45066166 TCATAAAATAAAT
1 TCATAAAATAAAT
45066179 TCATAA
1 TCATAA
45066185 TTTCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:45066430 original size:30 final size:29
Alignment explanation
Indices: 45066395--45066451 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
45066385 CCTCGACTCT
*
45066395 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTAC-ATTTTGCCCCTA
* *
45066425 AACTTTTACATAATTACATTTTTCCCC
1 AACTTTTACAAAATTACATTTTGCCCC
45066452 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.32, C:0.25, G:0.02, T:0.42
Consensus pattern (29 bp):
AACTTTTACAAAATTACATTTTGCCCCTA
Found at i:45073172 original size:50 final size:50
Alignment explanation
Indices: 45073042--45073285 Score: 265
Period size: 50 Copynumber: 4.7 Consensus size: 50
45073032 GATAATAACA
* ** ** * *
45073042 TGCCAAAGCCATGTCCCAGACATGGTCTTACATTGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* * *
45073093 TACCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
45073143 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
45073193 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
*
45073248 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA
45073286 TCTTTTTACC
Statistics
Matches: 163, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.56
51 31 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 35 0.21
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:45073220 original size:100 final size:105
Alignment explanation
Indices: 45073041--45073287 Score: 344
Period size: 100 Copynumber: 2.4 Consensus size: 105
45073031 TGATAATAAC
* **
45073041 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATTGGATGTTCTCGTGATGGTACCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCGTGATGGTACCCATGCCATG
* *
45073106 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
66 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* * *
45073143 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGT-CTCGGTGCCCATGCCAT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCGTGAT-GGTACCCATGCCAT
45073205 GTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 GTCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
*
45073248 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATC
45073288 TTTTTACCCA
Statistics
Matches: 128, Mismatches: 9, Indels: 11
0.86 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 49 0.38
101 35 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 36 0.28
107 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.26
Consensus pattern (105 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCGTGATGGTACCCATGCCATG
TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:45073406 original size:13 final size:13
Alignment explanation
Indices: 45073385--45073416 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
45073375 GCTTGGATCA
*
45073385 TCATCAAATAAAT
1 TCATAAAATAAAT
45073398 TCATAAAATAAAT
1 TCATAAAATAAAT
45073411 TCATAA
1 TCATAA
45073417 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:45073663 original size:30 final size:30
Alignment explanation
Indices: 45073628--45073685 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
45073618 CCTCGACTCT
*
45073628 AACTTTTTCAAAATTACAATTTTACCCCTA
1 AACTTTTACAAAATTACAATTTTACCCCTA
* * *
45073658 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTACCCC
45073686 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.02, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTACCCCTA
Found at i:45077758 original size:43 final size:43
Alignment explanation
Indices: 45077675--45077789 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
45077665 TCGATGCTAC
* *
45077675 TGTCCCAGACAGGGTCTTACACG-AGATCAATTAACGATGCCAA
1 TGTCCCAGACATGGTCTTACACGTA-ATCAATTAACAATGCCAA
*
45077718 TGTCCCAGACATGGTCTTACACGTAATCTGAA-T-ACAATGCCAT
1 TGTCCCAGACATGGTCTTACACGTAATC--AATTAACAATGCCAA
* *
45077761 TTTCCCAGACATGGTCTTACATGTAATCA
1 TGTCCCAGACATGGTCTTACACGTAATCA
45077790 TATCTTGGTA
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
41 1 0.02
43 59 0.92
44 2 0.03
45 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACACGTAATCAATTAACAATGCCAA
Found at i:45078323 original size:28 final size:29
Alignment explanation
Indices: 45078282--45078337 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
45078272 ATTTCATGAA
*
45078282 TTAACCCCTCAATTTACACTTTTT-TCAAT
1 TTAACCCCTCAATTGACA-TTTTTGTCAAT
*
45078311 TTAATCCCT-AATTGACATTTTTGTCAA
1 TTAACCCCTCAATTGACATTTTTGTCAA
45078338 AAATCACTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 5 0.21
28 11 0.46
29 8 0.33
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.45
Consensus pattern (29 bp):
TTAACCCCTCAATTGACATTTTTGTCAAT
Found at i:45079779 original size:20 final size:21
Alignment explanation
Indices: 45079754--45079801 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
45079744 ATTATGAGCT
45079754 TTGTTC-AAAATCTTCTATAC
1 TTGTTCTAAAATCTTCTATAC
*
45079774 TTGTTCTGAAATCTTCTATAC
1 TTGTTCTAAAATCTTCTATAC
45079795 TTGTTCT
1 TTGTTCT
45079802 GAATTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.23, C:0.19, G:0.08, T:0.50
Consensus pattern (21 bp):
TTGTTCTAAAATCTTCTATAC
Found at i:45079787 original size:21 final size:21
Alignment explanation
Indices: 45079761--45079804 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
45079751 GCTTTGTTCA
45079761 AAATCTTCTATACTTGTTCTG
1 AAATCTTCTATACTTGTTCTG
45079782 AAATCTTCTATACTTGTTCTG
1 AAATCTTCTATACTTGTTCTG
45079803 AA
1 AA
45079805 TTATTAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.09, T:0.45
Consensus pattern (21 bp):
AAATCTTCTATACTTGTTCTG
Found at i:45095586 original size:26 final size:26
Alignment explanation
Indices: 45095557--45095616 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
45095547 TCCCTTTGAA
* * *
45095557 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
45095583 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
45095611 CCATTC
1 TCATTC
45095617 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:45095602 original size:28 final size:28
Alignment explanation
Indices: 45095571--45095642 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
45095561 TCGATATTTT
*
45095571 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
45095599 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
45095627 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
45095643 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:45100616 original size:28 final size:27
Alignment explanation
Indices: 45100583--45100792 Score: 150
Period size: 28 Copynumber: 7.4 Consensus size: 27
45100573 CCAATCTTGT
*
45100583 ACACACAGTGCTTGGTTACGAAACTCGC
1 ACACACAGTGCTCGGTTACG-AACTCGC
**** * *
45100611 ACACACAGTGCCTCAACAACCGATCTCTC
1 ACACACAGTG-CTCGGTTA-CGAACTCGC
45100640 ACACACAGTGCTCGGTTACAGAACTCGC
1 ACACACAGTGCTCGGTTAC-GAACTCGC
**** *
45100668 ACACACAGTGCCTCAACAACCGATCTCGC
1 ACACACAGTG-CTCGGTTA-CGAACTCGC
45100697 ACACACAGTGCTCGGTTACGGAACTCGC
1 ACACACAGTGCTCGGTTAC-GAACTCGC
**** * *
45100725 ACACACAGTGCCTCAACAACCGATCTCAC
1 ACACACAGTG-CTCGGTTA-CGAACTCGC
* *
45100754 ACACACAGTGCTTGGTTACGGAACTCAC
1 ACACACAGTGCTCGGTTAC-GAACTCGC
45100782 ACACACAGTGC
1 ACACACAGTGC
45100793 CTATGTTCAC
Statistics
Matches: 138, Mismatches: 35, Indels: 18
0.72 0.18 0.09
Matches are distributed among these distances:
27 3 0.02
28 72 0.52
29 59 0.43
30 4 0.03
ACGTcount: A:0.30, C:0.35, G:0.18, T:0.17
Consensus pattern (27 bp):
ACACACAGTGCTCGGTTACGAACTCGC
Found at i:45100648 original size:57 final size:57
Alignment explanation
Indices: 45100560--45100794 Score: 348
Period size: 57 Copynumber: 4.1 Consensus size: 57
45100550 TCACATACTT
* * * *
45100560 AGTGCCCCAACAACCAATCT-TGTACACACAGTGCTTGGTTACGAAACTCGCACACAC
1 AGTGCCTCAACAACCGATCTCT-CACACACAGTGCTCGGTTACGAAACTCGCACACAC
45100617 AGTGCCTCAACAACCGATCTCTCACACACAGTGCTCGGTTAC-AGAACTCGCACACAC
1 AGTGCCTCAACAACCGATCTCTCACACACAGTGCTCGGTTACGA-AACTCGCACACAC
* *
45100674 AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACACAC
1 AGTGCCTCAACAACCGATCTCTCACACACAGTGCTCGGTTACGAAACTCGCACACAC
* * * *
45100731 AGTGCCTCAACAACCGATCTCACACACACAGTGCTTGGTTACGGAACTCACACACAC
1 AGTGCCTCAACAACCGATCTCTCACACACAGTGCTCGGTTACGAAACTCGCACACAC
45100788 AGTGCCT
1 AGTGCCT
45100795 ATGTTCACTT
Statistics
Matches: 166, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
56 1 0.01
57 164 0.99
58 1 0.01
ACGTcount: A:0.30, C:0.35, G:0.17, T:0.18
Consensus pattern (57 bp):
AGTGCCTCAACAACCGATCTCTCACACACAGTGCTCGGTTACGAAACTCGCACACAC
Found at i:45100697 original size:29 final size:29
Alignment explanation
Indices: 45100606--45100764 Score: 178
Period size: 29 Copynumber: 5.6 Consensus size: 29
45100596 GGTTACGAAA
45100606 CTCGCACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAACAACCGAT
* **** * *
45100635 CTCTCACACACAGTG-CTCGGTTACAGAA
1 CTCGCACACACAGTGCCTCAACAACCGAT
45100663 CTCGCACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAACAACCGAT
**** * *
45100692 CTCGCACACACAGTG-CTCGGTTACGGAA
1 CTCGCACACACAGTGCCTCAACAACCGAT
45100720 CTCGCACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAACAACCGAT
*
45100749 CTCACACACACAGTGC
1 CTCGCACACACAGTGC
45100765 TTGGTTACGG
Statistics
Matches: 101, Mismatches: 27, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
28 43 0.43
29 58 0.57
ACGTcount: A:0.30, C:0.38, G:0.16, T:0.16
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCAACAACCGAT
Found at i:45101967 original size:20 final size:21
Alignment explanation
Indices: 45101929--45101969 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
45101919 AAATTTTATC
*
45101929 TTATAATCATTTTTGTAAAAA
1 TTATAATCATTTTTCTAAAAA
*
45101950 TTATAATGA-TTTTCTAAAAA
1 TTATAATCATTTTTCTAAAAA
45101970 CAGAACAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (21 bp):
TTATAATCATTTTTCTAAAAA
Found at i:45106464 original size:46 final size:45
Alignment explanation
Indices: 45106396--45106569 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
45106386 GTAACCCGCC
45106396 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
45106441 CAATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 C-ATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * *
45106491 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
** *
45106534 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGG
1 -CATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
45106570 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 3 0.03
46 61 0.56
47 27 0.25
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (45 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:45106517 original size:93 final size:93
Alignment explanation
Indices: 45106402--45106573 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
45106392 CGCCCATAAG
* * *
45106402 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCAATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAATGAACTCGGACTCAACTCA
45106467 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
45106495 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAATGAACTCGGACTCAACTCA
*
45106560 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
45106574 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:45107025 original size:30 final size:30
Alignment explanation
Indices: 45106991--45107050 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
45106981 ATTTAATATG
45106991 AACTTTGGAAAAATTACACTTTTACCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
* * * *
45107021 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
45107051 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTACCCCTA
Found at i:45113983 original size:46 final size:46
Alignment explanation
Indices: 45113916--45114090 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
45113906 TGTAACCCGC
45113916 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
45113962 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
45114012 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
45114055 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
45114091 ATGCTCAACC
Statistics
Matches: 111, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 64 0.58
47 27 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:45114036 original size:93 final size:93
Alignment explanation
Indices: 45113924--45114094 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
45113914 GCCCATAAGT
* * *
45113924 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
45113989 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
45114017 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
45114082 CGAGTTCGGATGC
66 CGAGCTCGGATGC
45114095 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:45114546 original size:30 final size:30
Alignment explanation
Indices: 45114512--45114571 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
45114502 ATTTAATACG
45114512 AACTTTGGAAAAATTACACTTTTACCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
* * * *
45114542 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
45114572 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTACCCCTA
Found at i:45115594 original size:35 final size:35
Alignment explanation
Indices: 45115548--45115709 Score: 173
Period size: 35 Copynumber: 4.6 Consensus size: 35
45115538 AATACTCAAG
*
45115548 GTTCATTATATCATCACATATGGCCAAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * * **
45115583 GTACAATATATCATCATATATGACTGAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * * * * *
45115618 GCTCAATGA-AACATCACATGTAGTCAAATATTCAA
1 GTTCAAT-ATATCATCACATATGGCCAAATATACAA
* * *
45115653 GTTTAATATAACATCACATGTGGCCAAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
45115688 GTTCAATATATCATCACATATG
1 GTTCAATATATCATCACATATG
45115710 TACATACCTA
Statistics
Matches: 100, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
34 1 0.01
35 98 0.98
36 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (35 bp):
GTTCAATATATCATCACATATGGCCAAATATACAA
Found at i:45120746 original size:16 final size:16
Alignment explanation
Indices: 45120696--45120746 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
45120686 GTAGATCAGC
* *
45120696 AAATCCCGAAAAGCCA
1 AAATGCCGAAAAGCCG
*
45120712 AAATGCCGAAACA-CTG
1 AAATGCCGAAA-AGCCG
*
45120728 AAATGCTGAAAAGCCG
1 AAATGCCGAAAAGCCG
45120744 AAA
1 AAA
45120747 GTTTGGATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 1 0.04
16 26 0.93
17 1 0.04
ACGTcount: A:0.49, C:0.24, G:0.18, T:0.10
Consensus pattern (16 bp):
AAATGCCGAAAAGCCG
Found at i:45125887 original size:35 final size:35
Alignment explanation
Indices: 45125840--45126001 Score: 153
Period size: 35 Copynumber: 4.6 Consensus size: 35
45125830 AATACTCAAG
* *
45125840 GTTCATTATATCATCACATATGGCCAAATATACAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
* * * *
45125875 GTACAATATATCATCATATATGACCGAGTATACAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
* * * * * * *
45125910 GCTCAATAAAACATCACATGTAATCAAATATTCAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
* * * * *
45125945 GTTTAATATAACATCACATGTGGCCAGATATACAA
1 GTTCAATATATCATCACATATGACCAAATATACAA
*
45125980 GTTTAATATATCATCACATATG
1 GTTCAATATATCATCACATATG
45126002 TACATACCTA
Statistics
Matches: 100, Mismatches: 27, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
35 100 1.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (35 bp):
GTTCAATATATCATCACATATGACCAAATATACAA
Found at i:45127125 original size:33 final size:33
Alignment explanation
Indices: 45127068--45127152 Score: 125
Period size: 33 Copynumber: 2.6 Consensus size: 33
45127058 TCTCAGCTTG
* *
45127068 AGCCCTATTCAGTATCAGTATAGTCTGGGCCTT
1 AGCCCTATACAGTAACAGTATAGTCTGGGCCTT
* *
45127101 AGCCTTATACCGTAACAGTATAGTCTGGGCCTT
1 AGCCCTATACAGTAACAGTATAGTCTGGGCCTT
*
45127134 AGCCCTATATAGTAACAGT
1 AGCCCTATACAGTAACAGT
45127153 GTAATGCAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (33 bp):
AGCCCTATACAGTAACAGTATAGTCTGGGCCTT
Found at i:45127525 original size:27 final size:27
Alignment explanation
Indices: 45127495--45127664 Score: 200
Period size: 27 Copynumber: 6.3 Consensus size: 27
45127485 GGCATAATCA
* * *
45127495 TCATTTTACCATACAAGAGTATTACGA
1 TCATTTTACCATACAGGGGTATTACGG
* *
45127522 TCATTTTACCTTACAGGGGTATTATGG
1 TCATTTTACCATACAGGGGTATTACGG
* * *
45127549 TCATTTTACCCTACAAGGGCATTACGG
1 TCATTTTACCATACAGGGGTATTACGG
45127576 TCATTTTA-CACTACAGGGGTATTACGG
1 TCATTTTACCA-TACAGGGGTATTACGG
*
45127603 TCATTTTACCCTACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGG
* * *
45127630 TCATTTTACCCTATA-GGGTATTACAG
1 TCATTTTACCATACAGGGGTATTACGG
*
45127656 TAATTTTAC
1 TCATTTTAC
45127665 TAACCGAGGG
Statistics
Matches: 125, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
26 19 0.15
27 105 0.84
28 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGG
Found at i:45127580 original size:54 final size:53
Alignment explanation
Indices: 45127495--45127664 Score: 225
Period size: 54 Copynumber: 3.2 Consensus size: 53
45127485 GGCATAATCA
* * * *
45127495 TCATTTTACCATACAAGAGTATTACGATCATTTTACCTTACAGGGGTATTATGG
1 TCATTTTACCCTACAAGGGTATTACGGTCATTTTACC-TACAGGGGTATTACGG
*
45127549 TCATTTTACCCTACAAGGGCATTACGGTCATTTTACACTACAGGGGTATTACGG
1 TCATTTTACCCTACAAGGGTATTACGGTCATTTTAC-CTACAGGGGTATTACGG
* * *
45127603 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATA-GGGTATTACAG
1 TCATTTTACCCTACAAGGGTATTACGGTCATTTTA-CCTACAGGGGTATTACGG
*
45127656 TAATTTTAC
1 TCATTTTAC
45127665 TAACCGAGGG
Statistics
Matches: 104, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
53 18 0.17
54 84 0.81
55 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (53 bp):
TCATTTTACCCTACAAGGGTATTACGGTCATTTTACCTACAGGGGTATTACGG
Found at i:45127581 original size:81 final size:81
Alignment explanation
Indices: 45127482--45127664 Score: 237
Period size: 81 Copynumber: 2.3 Consensus size: 81
45127472 TACGGAACAT
* *
45127482 AAGGGCATAATCA-TCATTTTACCA-TACAAGAGTATTACGATCATTTTACCTTACAGGGGTATT
1 AAGGGCATTA-CAGTCATTTTACCACTACAAGAGTATTACGATCATTTTACCCTACAGGGGTATT
*
45127545 ATGGTCATTTTACCCTA
65 ACGGTCATTTTACCCTA
* * * *
45127562 CAAGGGCATTACGGTCATTTTA-CACTACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATT
1 -AAGGGCATTACAGTCATTTTACCACTACAAGAGTATTACGATCATTTTACCCTACAGGGGTATT
45127626 ACGGTCATTTTACCCTA
65 ACGGTCATTTTACCCTA
* * *
45127643 TAGGGTATTACAGTAATTTTAC
1 AAGGGCATTACAGTCATTTTAC
45127665 TAACCGAGGG
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
80 20 0.23
81 68 0.77
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (81 bp):
AAGGGCATTACAGTCATTTTACCACTACAAGAGTATTACGATCATTTTACCCTACAGGGGTATTA
CGGTCATTTTACCCTA
Found at i:45153871 original size:40 final size:39
Alignment explanation
Indices: 45153808--45153967 Score: 171
Period size: 40 Copynumber: 4.1 Consensus size: 39
45153798 TTTGGGATTA
* * *
45153808 AGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTT
1 AGCCCGATATAGCAACTCACACAAATGCCTTCGGGTCTT
45153847 AGCCCAGATATAGCAACTCACACAAATGCCTTCGGGTCTT
1 AGCCC-GATATAGCAACTCACACAAATGCCTTCGGGTCTT
* ** * *
45153887 AGCCCGGATATAATC-ACT-AGCATGAATGCCTTCGGGACAT
1 AGCCC-GATAT-AGCAACTCA-CACAAATGCCTTCGGGTCTT
* * *
45153927 AGCCCGATATAGCAACTCGCACGAATGCCTTCGGATCTT
1 AGCCCGATATAGCAACTCACACAAATGCCTTCGGGTCTT
45153966 AG
1 AG
45153968 TCCGGTTATC
Statistics
Matches: 101, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.31
40 66 0.65
41 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (39 bp):
AGCCCGATATAGCAACTCACACAAATGCCTTCGGGTCTT
Found at i:45158829 original size:71 final size:71
Alignment explanation
Indices: 45158741--45158905 Score: 294
Period size: 71 Copynumber: 2.3 Consensus size: 71
45158731 CTCAATAGCG
* *
45158741 TCGCACACTTAGTGTCCATAATGATTCAAGAATATATATTAAGTCTGCACACTCAGTTCTATATA
1 TCGCACACTTAGTGTCCATAATGATTCAAGAATATATATTAAGTCCGCACACTCAGTGCTATATA
45158806 ATCAAC
66 ATCAAC
45158812 TCGCACACTTAGTGTCCATAATGATTCAAGAATATATATTAAGTCCGCACACTCAGTGCTATATA
1 TCGCACACTTAGTGTCCATAATGATTCAAGAATATATATTAAGTCCGCACACTCAGTGCTATATA
45158877 ATCAAC
66 ATCAAC
*
45158883 TCGCACACTTAGTGCTACATAAT
1 TCGCACACTTAGTG-TCCATAAT
45158906 CAAACTCGCA
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 83 0.92
72 7 0.08
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.31
Consensus pattern (71 bp):
TCGCACACTTAGTGTCCATAATGATTCAAGAATATATATTAAGTCCGCACACTCAGTGCTATATA
ATCAAC
Found at i:45158874 original size:27 final size:27
Alignment explanation
Indices: 45158857--45159034 Score: 133
Period size: 27 Copynumber: 6.6 Consensus size: 27
45158847 ATATTAAGTC
45158857 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
45158884 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
45158912 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *** ** *
45158939 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
45158966 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
45158993 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
45159020 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
45159035 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 104 0.79
28 27 0.21
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:45158996 original size:54 final size:54
Alignment explanation
Indices: 45158857--45159033 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
45158847 ATATTAAGTC
* * *
45158857 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAA-T
* ** * *
45158912 CGCACACTTAGTGC-TACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
45158966 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
45159020 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45159034 TGTACAATTT
Statistics
Matches: 105, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 44 0.42
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:45159023 original size:81 final size:82
Alignment explanation
Indices: 45158878--45159033 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
45158868 TGCTATATAA
* *
45158878 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
45158943 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
45158960 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
45159023 ACACTTAGTGC
65 ACACTTAGTGC
45159034 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 42 0.63
82 25 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Done.