Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 141 of 352
Found at i:45966512 original size:39 final size:39
Alignment explanation
Indices: 45966443--45966577 Score: 216
Period size: 39 Copynumber: 3.5 Consensus size: 39
45966433 TTATATGATT
* *
45966443 TGGTGTTATATCCGGGCTAAGACCCAAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
45966482 TGGTGTTATATCTGGGTTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
45966521 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
45966560 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
45966578 TAAAGTCCCG
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 88 1.00
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:45967575 original size:68 final size:68
Alignment explanation
Indices: 45967462--45967608 Score: 276
Period size: 68 Copynumber: 2.2 Consensus size: 68
45967452 CTTGTAGTGA
* *
45967462 ATTTGTGATTTTGTTGCGAACATGGTTAAAACTTGTTAATTAGATGCTTTTCGAGTTCTTATGAT
1 ATTTGTGATTTTGTTGCAAACATGGTTAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGAT
45967527 CTT
66 CTT
45967530 ATTTGTGATTTTGTTGCAAACATGGTTAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGAT
1 ATTTGTGATTTTGTTGCAAACATGGTTAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGAT
45967595 CTT
66 CTT
45967598 ATTTGTGATTT
1 ATTTGTGATTT
45967609 CAATATTTGG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 77 1.00
ACGTcount: A:0.24, C:0.10, G:0.19, T:0.48
Consensus pattern (68 bp):
ATTTGTGATTTTGTTGCAAACATGGTTAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGAT
CTT
Found at i:45970703 original size:19 final size:19
Alignment explanation
Indices: 45970679--45970719 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
45970669 TTAAATTATT
*
45970679 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
45970698 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
45970717 TTA
1 TTA
45970720 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:45972759 original size:39 final size:39
Alignment explanation
Indices: 45972705--45972839 Score: 234
Period size: 39 Copynumber: 3.5 Consensus size: 39
45972695 TTATATGATT
45972705 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
45972744 TGGTGTTATATCCGGGCTAAGCCCCAAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
45972783 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
45972822 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
45972840 TAAAGTCCCG
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 91 1.00
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:45981549 original size:41 final size:41
Alignment explanation
Indices: 45981492--45981641 Score: 203
Period size: 41 Copynumber: 3.7 Consensus size: 41
45981482 TTGGGGTTTA
*
45981492 AATCCGAGCTTGGTCTCAAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
45981533 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCTAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
45981574 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
45981614 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
45981642 TGAGTCAGCG
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 60 0.66
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:45985558 original size:48 final size:48
Alignment explanation
Indices: 45985487--45985583 Score: 140
Period size: 48 Copynumber: 2.0 Consensus size: 48
45985477 ACCACGGCTA
* * *
45985487 ATGAGAGCTTGTGTAAGAATATGTCTGGGACATGGCATCGACGTTGAT
1 ATGAGAGCTAGTATAAGAATATGTCTGGGACATGGCATCGACATTGAT
** *
45985535 ATGAGAGCTAGTATAAGGCTATGTCTGGGACATGGCATCGGCATTGAT
1 ATGAGAGCTAGTATAAGAATATGTCTGGGACATGGCATCGACATTGAT
45985583 A
1 A
45985584 CGTATGCTAG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.28, C:0.13, G:0.31, T:0.28
Consensus pattern (48 bp):
ATGAGAGCTAGTATAAGAATATGTCTGGGACATGGCATCGACATTGAT
Found at i:45985593 original size:48 final size:48
Alignment explanation
Indices: 45985489--45985626 Score: 134
Period size: 48 Copynumber: 2.9 Consensus size: 48
45985479 CACGGCTAAT
* * * * * *
45985489 GAGAGCTTGTGTAAGAATATGTCTGGGACATGGCATCGACGTTGATAT
1 GAGAGCTAGTATAAGACTATGTCTGGGACATGGCATCGGCATTGATAC
*
45985537 GAGAGCTAGTATAAGGCTATGTCTGGGACATGGCATCGGCATTGATAC
1 GAGAGCTAGTATAAGACTATGTCTGGGACATGGCATCGGCATTGATAC
* * * * * * *
45985585 GTA-TGCTAGTGTAAGACCATATCTGGGATATGGAATCAGCAT
1 G-AGAGCTAGTATAAGACTATGTCTGGGACATGGCATCGGCAT
45985627 CAGTATGTGA
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
48 73 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (48 bp):
GAGAGCTAGTATAAGACTATGTCTGGGACATGGCATCGGCATTGATAC
Found at i:45988245 original size:27 final size:27
Alignment explanation
Indices: 45988078--45988255 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
45988068 TAAATTGTAC
*
45988078 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
45988105 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
45988131 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
45988159 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
45988187 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
45988214 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
45988241 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45988256 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:45988246 original size:82 final size:81
Alignment explanation
Indices: 45988075--45988255 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
45988065 GATTAAATTG
* * * *
45988075 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
45988140 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
45988156 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
45988220 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
45988238 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
45988256 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:45996251 original size:27 final size:27
Alignment explanation
Indices: 45996084--45996261 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
45996074 TAAATTGTAC
*
45996084 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
45996111 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
45996137 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
45996165 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
45996193 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
45996220 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
45996247 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45996262 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:45996252 original size:82 final size:81
Alignment explanation
Indices: 45996081--45996261 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
45996071 GATTAAATTG
* * * *
45996081 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
45996146 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
45996162 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
45996226 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
45996244 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
45996262 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:45998335 original size:18 final size:19
Alignment explanation
Indices: 45998312--45998349 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
45998302 GTTACATGGC
*
45998312 CTAAGG-ACACGGGCGTGT
1 CTAAGGCACAAGGGCGTGT
45998330 CTAAGGCACAAGGGCGTGT
1 CTAAGGCACAAGGGCGTGT
45998349 C
1 C
45998350 CTTGTGTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.24, C:0.24, G:0.37, T:0.16
Consensus pattern (19 bp):
CTAAGGCACAAGGGCGTGT
Found at i:46003896 original size:48 final size:48
Alignment explanation
Indices: 46003825--46003921 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 48
46003815 ACCACGGCTA
* * *
46003825 ATGAGAGCTTGTGTAAGAATATGTCTGGGACATGGCATCGGCGTTGAT
1 ATGAGAGCTAGTATAAGAATATGTCTGGGACATGGCATCGGCATTGAT
**
46003873 ATGAGAGCTAGTATAAGGCTATGTCTGGGACATGGCATCGGCATTGAT
1 ATGAGAGCTAGTATAAGAATATGTCTGGGACATGGCATCGGCATTGAT
46003921 A
1 A
46003922 CGTATGCTAG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (48 bp):
ATGAGAGCTAGTATAAGAATATGTCTGGGACATGGCATCGGCATTGAT
Found at i:46003931 original size:48 final size:48
Alignment explanation
Indices: 46003827--46003964 Score: 143
Period size: 48 Copynumber: 2.9 Consensus size: 48
46003817 CACGGCTAAT
* * * * *
46003827 GAGAGCTTGTGTAAGAATATGTCTGGGACATGGCATCGGCGTTGATAT
1 GAGAGCTAGTATAAGACTATGTCTGGGACATGGCATCGGCATTGATAC
*
46003875 GAGAGCTAGTATAAGGCTATGTCTGGGACATGGCATCGGCATTGATAC
1 GAGAGCTAGTATAAGACTATGTCTGGGACATGGCATCGGCATTGATAC
* * * * * * *
46003923 GTA-TGCTAGTGTAAGACCATATCTGGGATATGGAATCAGCAT
1 G-AGAGCTAGTATAAGACTATGTCTGGGACATGGCATCGGCAT
46003965 CAGTATGTGA
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
48 74 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (48 bp):
GAGAGCTAGTATAAGACTATGTCTGGGACATGGCATCGGCATTGATAC
Found at i:46005663 original size:17 final size:18
Alignment explanation
Indices: 46005641--46005674 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
46005631 CACATTGAAG
46005641 TGTTTT-ATTGAAAACCT
1 TGTTTTCATTGAAAACCT
46005658 TGTTTTCATTGAAAACC
1 TGTTTTCATTGAAAACC
46005675 CTTCTTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (18 bp):
TGTTTTCATTGAAAACCT
Found at i:46006924 original size:28 final size:28
Alignment explanation
Indices: 46006891--46006992 Score: 143
Period size: 28 Copynumber: 3.6 Consensus size: 28
46006881 GGCCCCTTTT
* *
46006891 GGCCCAATCTCATTCATATGTCCCATCG
1 GGCCCAATCACATTCATATGTCCCATCA
*
46006919 GGCCCAATCACATTCATATGGCCCATCA
1 GGCCCAATCACATTCATATGTCCCATCA
* *
46006947 GGCCCAATAACTTTCATAT-TGCCCATCA
1 GGCCCAATCACATTCATATGT-CCCATCA
46006975 GGCCCAATCACATTCATA
1 GGCCCAATCACATTCATA
46006993 GTCATGCAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.27, C:0.34, G:0.13, T:0.25
Consensus pattern (28 bp):
GGCCCAATCACATTCATATGTCCCATCA
Found at i:46011330 original size:71 final size:71
Alignment explanation
Indices: 46011246--46011387 Score: 275
Period size: 71 Copynumber: 2.0 Consensus size: 71
46011236 GATGAAATGA
*
46011246 TAATGTCTTGAAATAATATCGCATGATGAGCTCATTTATCCTTACTTGATGTATATGAAGATTTT
1 TAATGTCTTGAAATAATATCGCATGATGAGCTCATTTATCCTTACTTAATGTATATGAAGATTTT
46011311 GTGACT
66 GTGACT
46011317 TAATGTCTTGAAATAATATCGCATGATGAGCTCATTTATCCTTACTTAATGTATATGAAGATTTT
1 TAATGTCTTGAAATAATATCGCATGATGAGCTCATTTATCCTTACTTAATGTATATGAAGATTTT
46011382 GTGACT
66 GTGACT
46011388 AACATGTTTG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (71 bp):
TAATGTCTTGAAATAATATCGCATGATGAGCTCATTTATCCTTACTTAATGTATATGAAGATTTT
GTGACT
Found at i:46014063 original size:40 final size:40
Alignment explanation
Indices: 46013976--46014196 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 40
46013966 TATTTGGATG
* *
46013976 ATATCTGGGCTAAGTCCCGAAGGCA-TGGTGCT-TGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAT-TGACT
46014015 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* *
46014055 ATACCCGGGCTAAGTCCCGAAGGC-GTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGACT
** *
46014095 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
46014135 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
*
46014175 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
46014197 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 41 0.25
40 114 0.71
41 6 0.04
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:46014114 original size:80 final size:79
Alignment explanation
Indices: 46013982--46014196 Score: 299
Period size: 80 Copynumber: 2.7 Consensus size: 79
46013972 GATGATATCT
* * **
46013982 GGGCTAAGTCCCGAAGGCATGGTGCTTG-TGACTATATCCGGGCTAAGTCCCGAAGGCAGTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGCAGTTGTG
*
46014046 CTATTGACTATACCC
65 CTAGTGACTATACCC
**
46014061 GGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCTTTTGTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTGTG
*
46014126 CTAGTGACTATATCC
65 CTAGTGACTATACCC
* *
46014141 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
46014197 TACTTGGGTT
Statistics
Matches: 123, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 33 0.27
80 88 0.72
81 2 0.02
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGC
TAGTGACTATACCC
Found at i:46018586 original size:25 final size:25
Alignment explanation
Indices: 46018558--46018605 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
46018548 GTTATTGCTT
* * *
46018558 TTCGGCGAATTTGATGTTATTTTCA
1 TTCGACGAATTTAATGTGATTTTCA
*
46018583 TTCGATGAATTTAATGTGATTTT
1 TTCGACGAATTTAATGTGATTTT
46018606 GGGAATGGAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.23, C:0.08, G:0.19, T:0.50
Consensus pattern (25 bp):
TTCGACGAATTTAATGTGATTTTCA
Found at i:46021341 original size:6 final size:6
Alignment explanation
Indices: 46021311--46021385 Score: 64
Period size: 6 Copynumber: 12.3 Consensus size: 6
46021301 AAGAAACATT
* * *
46021311 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
46021360 ATCATA ATCAGA ATAAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT
46021386 TAGGTGATAG
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
5 2 0.04
6 47 0.87
7 4 0.07
8 1 0.02
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:46021361 original size:19 final size:19
Alignment explanation
Indices: 46021337--46021407 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
46021327 AAATGAGAAT
46021337 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTGA
* *
46021356 CAGAATCATAATCAGAAT-A
1 CAGAATCAGAATCAG-GTGA
*
46021375 -AGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGGTGA
* *
46021393 TAGAATCAAAATCAG
1 CAGAATCAGAATCAG
46021408 TATCAGGTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 1 0.02
18 13 0.31
19 27 0.64
20 1 0.02
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.20
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTGA
Found at i:46021373 original size:37 final size:37
Alignment explanation
Indices: 46021320--46021413 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
46021310 TATCAGAACT
*
46021320 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
* * * *
46021357 AGAATCATAATCAGAATAAGAATCAGAATTAGGTGAT
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
*
46021394 AGAATCAAAATCAGTATCAG
1 AGAATCAAAATCAGAATCAG
46021414 GTAACAGAGT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:46021380 original size:18 final size:18
Alignment explanation
Indices: 46021296--46021381 Score: 68
Period size: 18 Copynumber: 4.7 Consensus size: 18
46021286 AGCCCATTAT
* *
46021296 AGAATAAGAAACATTATC
1 AGAATAAGAATCATAATC
* *
46021314 AGAACT-AGAATCAAAATG
1 AGAA-TAAGAATCATAATC
* *
46021332 AGAATCAGAATCAGAATC
1 AGAATAAGAATCATAATC
*
46021350 AG-GTGACAGAATCATAATC
1 AGAAT-A-AGAATCATAATC
46021369 AGAATAAGAATCA
1 AGAATAAGAATCA
46021382 GAATTAGGTG
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
17 2 0.04
18 35 0.66
19 15 0.28
20 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (18 bp):
AGAATAAGAATCATAATC
Found at i:46021415 original size:25 final size:25
Alignment explanation
Indices: 46021356--46021435 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
46021346 AATCAGGTGA
46021356 CAGAATCA--TAATCAGAAT-AAGAAT
1 CAGAATCAGGTAA-CAGAATCAA-AAT
* * *
46021380 CAGAATTAGGTGATAGAATCAAAAT
1 CAGAATCAGGTAACAGAATCAAAAT
* *
46021405 CAGTATCAGGTAACAGAGTCAAAAT
1 CAGAATCAGGTAACAGAATCAAAAT
46021430 CAGAAT
1 CAGAAT
46021436 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
24 7 0.16
25 33 0.75
26 4 0.09
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.21
Consensus pattern (25 bp):
CAGAATCAGGTAACAGAATCAAAAT
Found at i:46021631 original size:27 final size:27
Alignment explanation
Indices: 46021601--46021653 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
46021591 ATTGCGGTAG
* *
46021601 AGCCACTAGAAA-AGATATTTGTGGCAT
1 AGCCACCAGAAACAGATA-ATGTGGCAT
46021628 AGCCACCAGAAACAGATAATGTGGCA
1 AGCCACCAGAAACAGATAATGTGGCA
46021654 AAGAAACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (27 bp):
AGCCACCAGAAACAGATAATGTGGCAT
Found at i:46021847 original size:22 final size:22
Alignment explanation
Indices: 46021819--46021883 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
46021809 GCAAATACGT
*
46021819 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
46021841 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
46021863 TTGGCACAAAGCCATACTCAG
1 TTGGCACAAAGCCATAATCAG
46021884 AATAATTGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 33 0.92
23 1 0.03
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:46022401 original size:27 final size:27
Alignment explanation
Indices: 46022290--46022402 Score: 147
Period size: 27 Copynumber: 4.2 Consensus size: 27
46022280 GGTATCTCGA
* * *
46022290 TAATTTTACCCTAGAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
46022317 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
46022344 TAATTCTACCCTACAGTGGTATTTC-G
1 TAATTCTACCCTACAGGGGTATTTCAG
46022370 ATAATTCTACCCTACAGGGGTATTTCAG
1 -TAATTCTACCCTACAGGGGTATTTCAG
46022398 TAATT
1 TAATT
46022403 TTGTAAATTA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.01
27 72 0.97
28 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:46022417 original size:27 final size:27
Alignment explanation
Indices: 46022387--46022511 Score: 108
Period size: 27 Copynumber: 4.6 Consensus size: 27
46022377 TACCCTACAG
* **
46022387 GGGTATTTCAGTAATTTTGTAAATTAA
1 GGGTATTTCAGTAATTTTATAAATCGA
*** * *
46022414 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
* * * *
46022441 GAGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTATAAATCGA
**
46022468 GGGTATTTCAGTAATTTTATAGGTCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
46022495 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
46022512 CACAAACTAG
Statistics
Matches: 79, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
26 3 0.04
27 76 0.96
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTATAAATCGA
Found at i:46022525 original size:27 final size:27
Alignment explanation
Indices: 46022495--46022592 Score: 126
Period size: 27 Copynumber: 3.6 Consensus size: 27
46022485 TATAGGTCGA
**
46022495 GGGTATTTCAGTAATTTCACAAACTAG
1 GGGTATTTTGGTAATTTCACAAACTAG
46022522 GGGTATTTTGGTAATTTCACAAACTAG
1 GGGTATTTTGGTAATTTCACAAACTAG
** * *
46022549 GGGTATTTTGGTAATTTTGCTAA-TCG
1 GGGTATTTTGGTAATTTCACAAACTAG
46022575 AGGGTATTTTGGTAATTT
1 -GGGTATTTTGGTAATTT
46022593 GGTAAACTAA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 2 0.03
27 62 0.97
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTCACAAACTAG
Found at i:46025554 original size:26 final size:26
Alignment explanation
Indices: 46025525--46025580 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
46025515 TGATAAAAAT
46025525 TGATAATGGGTTAGGTAAATGTTCAA
1 TGATAATGGGTTAGGTAAATGTTCAA
*
46025551 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCAA
46025577 TGAT
1 TGAT
46025581 GGGCATTCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCAA
Found at i:46031997 original size:40 final size:40
Alignment explanation
Indices: 46031941--46032053 Score: 149
Period size: 40 Copynumber: 2.9 Consensus size: 40
46031931 TTTGGATGAT
46031941 AACCGGGC-ATGTCCCGAAGGCATTTGTGCGAGTTACT-A
1 AACCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTCA
* * * *
46031979 AATCCGGGCTAAGTCCCGAAGGCAATTGTGTGAGTTACTCT
1 AA-CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTCA
* *
46032020 AACCGGGCTATGTCCCGAAAGCATTTGAGCGAGT
1 AACCGGGCTATGTCCCGAAGGCATTTGTGCGAGT
46032054 AGCTATATCC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.03
39 6 0.10
40 53 0.84
41 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
AACCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTCA
Found at i:46041050 original size:26 final size:26
Alignment explanation
Indices: 46041014--46041065 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
46041004 CACCACTGAA
* *
46041014 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
46041040 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
46041066 ATTTCATTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:46041141 original size:70 final size:70
Alignment explanation
Indices: 46041026--46041175 Score: 223
Period size: 72 Copynumber: 2.1 Consensus size: 70
46041016 GGGGAATCAT
*
46041026 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCATTT-CATTTCAAATATACAATGGA
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCATTTACATTTCAAAGATACAATGGA
46041090 TATCG
66 TATCG
***
46041095 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAATCCCC-TTTCACATTTCAAAGATATGGT
1 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAA-CCCCATTT-ACATTTCAAAGATACAAT
46041159 GGATATCG
63 GGATATCG
46041167 CACTTAGCA
1 CACTTAGCA
46041176 CCACCAATGA
Statistics
Matches: 73, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
69 16 0.22
70 23 0.32
71 4 0.05
72 30 0.41
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (70 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCATTTACATTTCAAAGATACAATGGA
TATCG
Found at i:46041399 original size:103 final size:104
Alignment explanation
Indices: 46041094--46041420 Score: 568
Period size: 104 Copynumber: 3.2 Consensus size: 104
46041084 AATGGATATC
*
46041094 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAATCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
46041159 GGATATCGCACTTAGCACCACCAATGAATCGGGGAATCA
66 GGATATCGCACTTAGCACCACCAATGAATCGGGGAATCA
46041198 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
*
46041263 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACTTAGCACCACCAATGAATCGGGGAATCA
46041302 GCACTTAGCAA-CCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* * *
46041366 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCA
**
46041405 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
46041421 TTTATATACA
Statistics
Matches: 213, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
103 95 0.45
104 118 0.55
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACTTAGCACCACCAATGAATCGGGGAATCA
Found at i:46046870 original size:27 final size:27
Alignment explanation
Indices: 46046835--46046936 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 27
46046825 CCACTGAATC
* *
46046835 GGGGAATCATCACTTAGCAACCCCTCG
1 GGGGAATCAGCACATAGCAACCCCTCG
*
46046862 GGGGAATCAGCACATAGCAACCCCCTCA
1 GGGGAATCAGCACATAGCAA-CCCCTCG
** *
46046890 ATGG-AT---CACTTAGCAACCCCTCG
1 GGGGAATCAGCACATAGCAACCCCTCG
46046913 GGGGAATCAGCACATAGCAACCCC
1 GGGGAATCAGCACATAGCAACCCC
46046937 CTTTCACATT
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
23 8 0.13
24 11 0.18
27 33 0.55
28 8 0.13
ACGTcount: A:0.29, C:0.34, G:0.22, T:0.15
Consensus pattern (27 bp):
GGGGAATCAGCACATAGCAACCCCTCG
Found at i:46046921 original size:24 final size:24
Alignment explanation
Indices: 46046843--46046921 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 24
46046833 TCGGGGAATC
46046843 ATCACTTAGCAACCCCTCGGGGGA
1 ATCACTTAGCAACCCCTCGGGGGA
* ***
46046867 ATCAGCACATAGCAACCCCCTCAATGG-
1 AT---CACTTAGCAA-CCCCTCGGGGGA
46046894 ATCACTTAGCAACCCCTCGGGGGA
1 ATCACTTAGCAACCCCTCGGGGGA
46046918 ATCA
1 ATCA
46046922 GCACATAGCA
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
23 8 0.19
24 15 0.36
27 11 0.26
28 8 0.19
ACGTcount: A:0.29, C:0.34, G:0.20, T:0.16
Consensus pattern (24 bp):
ATCACTTAGCAACCCCTCGGGGGA
Found at i:46047025 original size:104 final size:104
Alignment explanation
Indices: 46046896--46047222 Score: 584
Period size: 104 Copynumber: 3.1 Consensus size: 104
46046886 CTCAATGGAT
46046896 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
46046961 GATATCGCACTTAGCACCACCAATGAATCGGGGAATCAG
66 GATATCGCACTTAGCACCACCAATGAATCGGGGAATCAG
46047000 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
*
46047065 GATATCGCACTTAGCACCACCAATGAACCGGGGAATCAG
66 GATATCGCACTTAGCACCACCAATGAATCGGGGAATCAG
46047104 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* * *
46047169 GATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAG
66 GAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAG
**
46047208 CACACAGCAACCCCT
1 CACTTAGCAACCCCT
46047223 TTTATATACA
Statistics
Matches: 215, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
104 214 1.00
105 1 0.00
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (104 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATATCGCACTTAGCACCACCAATGAATCGGGGAATCAG
Found at i:46047584 original size:29 final size:29
Alignment explanation
Indices: 46047551--46047614 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
46047541 TAATCCACCA
46047551 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
46047580 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
46047610 CCCAA
1 CCCAA
46047615 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:46047588 original size:30 final size:30
Alignment explanation
Indices: 46047558--46047614 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
46047548 CCACCCAACT
46047558 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
46047587 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
46047615 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:46054229 original size:43 final size:42
Alignment explanation
Indices: 46054156--46054324 Score: 196
Period size: 42 Copynumber: 4.0 Consensus size: 42
46054146 CATGGTACCG
* * **
46054156 TATCAATGCCATATCCCATATATGGTCTTACATGTAATCTTG
1 TATCGATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
* * *
46054198 TATCGATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCA
1 TATCGATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCA
* *
46054241 TCTCGATGCCATATCCCAGATATGGTCTTACATGTAGTCTCA
1 TATCGATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
* * * *
46054283 TATTGATTCCATATCCCAGATATGGTCTTACACGTAGTCTCA
1 TATCGATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
46054325 GTAACCCTAA
Statistics
Matches: 108, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 75 0.69
43 33 0.31
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (42 bp):
TATCGATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
Found at i:46061775 original size:85 final size:84
Alignment explanation
Indices: 46061669--46061824 Score: 215
Period size: 85 Copynumber: 1.8 Consensus size: 84
46061659 GGTGCCGTAC
* * *
46061669 CAATGCCATATCCTAATTATGGTCTTACCTGTAATCTCATATCAATGCCAATAGCCCAGCTATGG
1 CAATGCCATATCCCAATTATGGTCTTACATGTAATCTCATATCAATG-CAATAGCCCAGATATGG
46061734 TCTTACACGAAGTCTCATAT
65 TCTTACACGAAGTCTCATAT
* ** * *
46061754 CAATGCCATATCCCAGA-TATGGTCTTACATGTAGTCTCATATTGATGCAATATCCTAGATATGG
1 CAATGCCATATCCCA-ATTATGGTCTTACATGTAATCTCATATCAATGCAATAGCCCAGATATGG
46061818 TCTTACA
65 TCTTACA
46061825 TGTAGTCTTA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
84 21 0.34
85 40 0.65
86 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (84 bp):
CAATGCCATATCCCAATTATGGTCTTACATGTAATCTCATATCAATGCAATAGCCCAGATATGGT
CTTACACGAAGTCTCATAT
Found at i:46061825 original size:42 final size:42
Alignment explanation
Indices: 46061669--46061832 Score: 195
Period size: 42 Copynumber: 3.9 Consensus size: 42
46061659 GGTGCCGTAC
* * * *
46061669 CAATGCCATATCCTA-ATTATGGTCTTACCTGTAATCTCATAT
1 CAATGCAATATCCCAGA-TATGGTCTTACATGTAGTCTCATAT
* * * *
46061711 CAATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATAT
1 CAATG-CAATATCCCAGATATGGTCTTACATGTAGTCTCATAT
*
46061754 CAATGCCATATCCCAGATATGGTCTTACATGTAGTCTCATAT
1 CAATGCAATATCCCAGATATGGTCTTACATGTAGTCTCATAT
** *
46061796 TGATGCAATATCCTAGATATGGTCTTACATGTAGTCT
1 CAATGCAATATCCCAGATATGGTCTTACATGTAGTCT
46061833 TAGTAGCCCT
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 70 0.68
43 33 0.32
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.34
Consensus pattern (42 bp):
CAATGCAATATCCCAGATATGGTCTTACATGTAGTCTCATAT
Found at i:46067510 original size:49 final size:49
Alignment explanation
Indices: 46067340--46067516 Score: 183
Period size: 49 Copynumber: 3.6 Consensus size: 49
46067330 TGAGGTCACG
* *
46067340 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCGGATAGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
** * ** ** * ***
46067389 CATGTAGTACTAAGTGCAGGTTACTATGCATACCCAATAACTTCGATCATG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT-GGTCGCA
* *
46067440 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
* *
46067489 TGTGTAGTACTACGTACAGGCTACTATG
1 TGTGTAGTACTAAGTGCAGGCTACTATG
46067517 CATACCAGAT
Statistics
Matches: 96, Mismatches: 30, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
49 58 0.60
50 4 0.04
51 34 0.35
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
Found at i:46067514 original size:100 final size:100
Alignment explanation
Indices: 46067339--46067522 Score: 287
Period size: 100 Copynumber: 1.8 Consensus size: 100
46067329 GTGAGGTCAC
* * *
46067339 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCGGATAGTTGGTCGCACATGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCACATGTAGTACTAAGT
* *
46067404 GCAGGTTACTATGCATACCCAATAACTTCGATCAT
66 ACAGGCTACTATGCATACCCAATAACTTCGATCAT
* ** *
46067439 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTACGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCACATGTAGTACTAAGT
46067504 ACAGGCTACTATGCATACC
66 ACAGGCTACTATGCATACC
46067523 AGATAGCTTT
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 75 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCACATGTAGTACTAAGT
ACAGGCTACTATGCATACCCAATAACTTCGATCAT
Found at i:46068977 original size:27 final size:27
Alignment explanation
Indices: 46068942--46068999 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
46068932 ACCCTCTAAT
* *
46068942 TGATCAAATGACTATTATGCCCCTATG
1 TGATAAAATGACTATTATGCCCCTACG
*
46068969 TGATAAAATGACTATTATGCCTCTACG
1 TGATAAAATGACTATTATGCCCCTACG
46068996 TGAT
1 TGAT
46069000 GTATGACTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (27 bp):
TGATAAAATGACTATTATGCCCCTACG
Found at i:46089368 original size:39 final size:40
Alignment explanation
Indices: 46089267--46089451 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
46089257 TTAAATGATG
* * * * *
46089267 TCCGGCCTAAATCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
46089306 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
46089347 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
46089386 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
46089425 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
46089452 AATGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:46089473 original size:79 final size:79
Alignment explanation
Indices: 46089320--46089484 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
46089310 GGACTAAGAT
* **
46089320 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
46089385 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
46089399 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
46089462 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
46089478 CCGAAGG
1 CCGAAGG
46089485 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:46097464 original size:40 final size:40
Alignment explanation
Indices: 46097273--46097457 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
46097263 TCGAATGATG
* * * *
46097273 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
46097313 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46097353 TCCGAGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46097392 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46097433 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46097458 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46097479 original size:79 final size:79
Alignment explanation
Indices: 46097326--46097480 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
46097316 GGACTAAGAT
* **
46097326 CCGAAGGCATTTGTGCGAGATACTAATTCCGAGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
46097391 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * * *
46097405 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGAGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
46097468 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
46097481 ATTCCGAGGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:46110965 original size:31 final size:30
Alignment explanation
Indices: 46110923--46110986 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 30
46110913 CCTTTTCATA
46110923 TTTTATATTTCATAACACCGGGCCGAAGCC
1 TTTTATATTTCATAACACCGGGCCGAAGCC
** *
46110953 TTTTCATATTTCATATTACTGGGCCGAAGCC
1 TTTT-ATATTTCATAACACCGGGCCGAAGCC
46110984 TTT
1 TTT
46110987 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (30 bp):
TTTTATATTTCATAACACCGGGCCGAAGCC
Found at i:46111235 original size:24 final size:25
Alignment explanation
Indices: 46111195--46111277 Score: 134
Period size: 25 Copynumber: 3.4 Consensus size: 25
46111185 CTGGAGGCCT
46111195 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTAATAAACTGGGGCAAA
*
46111219 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
46111244 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
46111269 AGCCCTTTT
1 AGCCCTTTT
46111278 CGGTAAACTA
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
23 7 0.13
24 13 0.24
25 35 0.64
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:46111291 original size:26 final size:24
Alignment explanation
Indices: 46111195--46111302 Score: 128
Period size: 25 Copynumber: 4.4 Consensus size: 24
46111185 CTGGAGGCCT
*
46111195 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
46111219 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGC-AA
*
46111244 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGC-AA
* * *
46111269 AGCCCTTTTCGGTAAACTAGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
46111294 AGCCCTTTT
1 AGCCCTTTT
46111303 TGTAGTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
23 7 0.09
24 13 0.17
25 45 0.60
26 10 0.13
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:46111373 original size:20 final size:20
Alignment explanation
Indices: 46111350--46111396 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
46111340 TTATAAATAC
46111350 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
46111369 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
46111390 ATCATGT
1 ATCATGT
46111397 ATATCAAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:46112100 original size:27 final size:27
Alignment explanation
Indices: 46112058--46112183 Score: 155
Period size: 27 Copynumber: 4.7 Consensus size: 27
46112048 AGTTCTATTC
** *
46112058 AAGGGTATTTCT-GTAATTTTGTAAATT
1 AAGGGTATTT-TGGTAATTTTACAAACT
* *
46112085 AAGGGTATTTTGGTAATTTTATAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
* *
46112112 GAGGGTATTTCGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
*
46112139 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
*
46112166 AGGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
46112184 CTATCCTACA
Statistics
Matches: 90, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 89 0.99
ACGTcount: A:0.29, C:0.05, G:0.22, T:0.44
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:46112223 original size:27 final size:27
Alignment explanation
Indices: 46112060--46112223 Score: 118
Period size: 27 Copynumber: 6.1 Consensus size: 27
46112050 TTCTATTCAA
* ** *
46112060 GGGTATTTCTGTAATTTTGTAAATTAA-
1 GGGTATTTCGGTAATTTTACAAA-CAAG
* * **
46112087 GGGTATTTTGGTAATTTTATAAA-TTG
1 GGGTATTTCGGTAATTTTACAAACAAG
*
46112113 AGGGTATTTCGGTAATTTTACAAACTAG
1 -GGGTATTTCGGTAATTTTACAAACAAG
* *
46112141 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTTACAAACAAG
* * **
46112168 GGGTATTTTGGTAATTCTATCCTAC-AG
1 GGGTATTTCGGTAATTTTA-CAAACAAG
* * *
46112195 GGGTATTTCAGTAATTTCACAATCAAG
1 GGGTATTTCGGTAATTTTACAAACAAG
46112222 GG
1 GG
46112224 TAAAACGATA
Statistics
Matches: 113, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.02
27 106 0.94
28 5 0.04
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAACAAG
Found at i:46112262 original size:53 final size:52
Alignment explanation
Indices: 46112205--46112316 Score: 138
Period size: 53 Copynumber: 2.1 Consensus size: 52
46112195 GGGTATTTCA
*
46112205 GTAATTT-CACAATCAAGGGTAAAACGATAATTTTATAAA-CTAAAGGTAAAATG
1 GTAATTTGCA-AATCAAGGGT-AAACGATAATTCTATAAATC-AAAGGTAAAATG
* * *
46112258 GTAATTTTGTAAATCGAGGGTAAACGATAATTCTATAAATCAAGGGTAAAATG
1 GTAA-TTTGCAAATCAAGGGTAAACGATAATTCTATAAATCAAAGGTAAAATG
46112311 GTAATT
1 GTAATT
46112317 CTATAAATCG
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
52 2 0.04
53 36 0.69
54 13 0.25
55 1 0.02
ACGTcount: A:0.44, C:0.08, G:0.18, T:0.30
Consensus pattern (52 bp):
GTAATTTGCAAATCAAGGGTAAACGATAATTCTATAAATCAAAGGTAAAATG
Found at i:46112279 original size:80 final size:80
Alignment explanation
Indices: 46112215--46112405 Score: 267
Period size: 80 Copynumber: 2.4 Consensus size: 80
46112205 GTAATTTCAC
* *
46112215 AATCAAGGGTAAAACGATAATTTTATAAACTAAAG-GTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCAAGGGTAAAACGATAATTCTATAAA-TAAAGCGTAAAACGGTAATTTTGTAAATCGAGGGT
46112279 AAACGATAATTCTATA
65 AAACGATAATTCTATA
* * **
46112295 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGCGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCAAGGGTAAAACGATAATTCTATAAATAAAGCGTAAAACGGTAATTTTGTAAATCGAGGGT-
46112360 AAACGATAATTCTATA
65 AAACGATAATTCTATA
* * * *
46112376 AATCGAGGGTAAAATGGTAATTCTACAAAT
1 AATCAAGGGTAAAACGATAATTCTATAAAT
46112406 TGAGGGTATT
Statistics
Matches: 101, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
79 3 0.03
80 54 0.53
81 44 0.44
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.29
Consensus pattern (80 bp):
AATCAAGGGTAAAACGATAATTCTATAAATAAAGCGTAAAACGGTAATTTTGTAAATCGAGGGTA
AACGATAATTCTATA
Found at i:46112410 original size:27 final size:27
Alignment explanation
Indices: 46112215--46112413 Score: 204
Period size: 27 Copynumber: 7.4 Consensus size: 27
46112205 GTAATTTCAC
* * *
46112215 AATCAAGGGTAAAACGATAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * * *
46112242 AA-CTAAAGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
*
46112269 AATCGAGGGT-AAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
46112295 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
46112322 AATCGAGCGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
46112349 AATCGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
46112376 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
46112403 AATTGAGGGTA
1 AATCGAGGGTA
46112414 TTTCAGTAAT
Statistics
Matches: 141, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
26 22 0.16
27 118 0.84
28 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:46114351 original size:13 final size:14
Alignment explanation
Indices: 46114327--46114359 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
46114317 AACACACACA
46114327 TATCACTTAACATG
1 TATCACTTAACATG
46114341 TATCA-TTAACATG
1 TATCACTTAACATG
46114354 T-TCACT
1 TATCACT
46114360 GTAAAACATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 3 0.17
13 10 0.56
14 5 0.28
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.39
Consensus pattern (14 bp):
TATCACTTAACATG
Found at i:46123416 original size:39 final size:39
Alignment explanation
Indices: 46123360--46123617 Score: 311
Period size: 39 Copynumber: 6.6 Consensus size: 39
46123350 ATAATGGAGA
* * * * * *
46123360 ATTATATACGGGTTAAGTCTCAAAGGCATTTGTGTTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
46123399 GTTATATTCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * * *
46123438 ATTATATCCAGGCTAAGTCCCGAAGGAATTCGTACTAGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
46123477 ATTGTATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
*
46123516 GTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
46123555 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTAGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGT
46123594 ATTATATCCGGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
46123618 CATGCTTTGT
Statistics
Matches: 191, Mismatches: 26, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
39 169 0.88
40 22 0.12
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
Found at i:46123593 original size:117 final size:117
Alignment explanation
Indices: 46123360--46123634 Score: 365
Period size: 117 Copynumber: 2.3 Consensus size: 117
46123350 ATAATGGAGA
* * * * * *
46123360 ATTATATACGGGTTAAGTCTCAAAGGCATTTGTGTTGGTGTTATATTCGGGCTAAGTCCCGAAGG
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
46123425 AATTCGTGCTGGTATTATATCCAGGCTAAGTCCCGAAGGAATTCGTACTAGT
66 AATTCGTGCTGGTATTATATCCAGGCTAAGTCCCGAAGGAATTCGTACTAGT
*
46123477 ATTGTATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
* * * * * *
46123542 CATTCGTGCTGGTATTATATCCGGGCTAAAGTCCCGCAGG-CTTTGTGCTAGT
66 AATTCGTGCTGGTATTATATCCAGGCT-AAGTCCCGAAGGAATTCGTACTAGT
* * *
46123594 ATTATATCCGGGCTTAAAGTCCCGCATGC-TTTGTGGTGGTG
1 ATTATATCCGGGC-T-AAGTCCCGAAGGCATTTGTGCTGGTG
46123635 ATTGGAATTG
Statistics
Matches: 138, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
117 104 0.75
118 23 0.17
119 11 0.08
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (117 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
AATTCGTGCTGGTATTATATCCAGGCTAAGTCCCGAAGGAATTCGTACTAGT
Found at i:46129259 original size:39 final size:39
Alignment explanation
Indices: 46129174--46129469 Score: 380
Period size: 39 Copynumber: 7.6 Consensus size: 39
46129164 ATAATGGAGA
* * *
46129174 ATTATATCCGGGTTAAGTCCCGAA-GCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
* *
46129212 GTTATATCCGGGCTAAGTCCCGAAGGAATTCATGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
*
46129251 ATTATATCCGGGCTAAGTCCCAAAGGAATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
* * * * *
46129290 ATTATATCTGGGCTAAGTCCAGACGGAATTCGTACCGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
* *
46129329 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
* *
46129368 GTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
* * * *
46129407 ATTATATTCGGGCTAAAGTCCCGTAGG-GTTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGAATTCGTGCTGGT
46129446 ATTATATCCGGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
46129470 CATGCTTTGT
Statistics
Matches: 226, Mismatches: 29, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
38 22 0.10
39 183 0.81
40 21 0.09
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
Found at i:46141254 original size:39 final size:39
Alignment explanation
Indices: 46141210--46141287 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
46141200 GATGAGAGAA
46141210 GGATGTTACAATTAGATGAGTTGATAGAGATGAGGTTGT
1 GGATGTTACAATTAGATGAGTTGATAGAGATGAGGTTGT
*
46141249 GGATGTTACAATTGGATGAGTTGATAGAGATGAGGTTGT
1 GGATGTTACAATTAGATGAGTTGATAGAGATGAGGTTGT
46141288 TTTCCTATGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.29, C:0.03, G:0.35, T:0.33
Consensus pattern (39 bp):
GGATGTTACAATTAGATGAGTTGATAGAGATGAGGTTGT
Found at i:46152500 original size:31 final size:31
Alignment explanation
Indices: 46152464--46152548 Score: 109
Period size: 31 Copynumber: 2.7 Consensus size: 31
46152454 CCACAGAGAA
*
46152464 AGTCCGCTGGGACAATAAACACAGAAA-AGAT
1 AGTCCGCTGGGACAGTAAACACA-AAATAGAT
*
46152495 AGTCCGTTGGGACAGTAAACACAAAATAGAT
1 AGTCCGCTGGGACAGTAAACACAAAATAGAT
* * *
46152526 AGTCCACTAGGATAGTAAACACA
1 AGTCCGCTGGGACAGTAAACACA
46152549 TAACAAATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 3 0.06
31 44 0.94
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.16
Consensus pattern (31 bp):
AGTCCGCTGGGACAGTAAACACAAAATAGAT
Found at i:46154392 original size:25 final size:25
Alignment explanation
Indices: 46154343--46154393 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
46154333 CCCTTATAAT
** *
46154343 GTGAAAATGACCATTTTGCCCCTAG
1 GTGAAAATGACCATGATACCCCTAG
*
46154368 GTGAAAATGACCATGATACCTCTAG
1 GTGAAAATGACCATGATACCCCTAG
46154393 G
1 G
46154394 GATATGCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (25 bp):
GTGAAAATGACCATGATACCCCTAG
Found at i:46154445 original size:10 final size:10
Alignment explanation
Indices: 46154430--46154469 Score: 71
Period size: 10 Copynumber: 3.9 Consensus size: 10
46154420 CTGGTTTGTA
46154430 CATGATATGC
1 CATGATATGC
46154440 CATGATATGC
1 CATGATATGC
46154450 ACATGATATGC
1 -CATGATATGC
46154461 CATGATATG
1 CATGATATG
46154470 TTCATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 19 0.66
11 10 0.34
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (10 bp):
CATGATATGC
Found at i:46154455 original size:21 final size:21
Alignment explanation
Indices: 46154429--46154469 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
46154419 ACTGGTTTGT
46154429 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
46154450 ACATGATATGCCATGATATG
1 ACATGATATGCCATGATATG
46154470 TTCATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:46162263 original size:25 final size:25
Alignment explanation
Indices: 46162214--46162264 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
46162204 CCCTTATACT
** * *
46162214 GTGAAAATGACCATTTTGCCTCTAG
1 GTGAAAATGACCATGATACCCCTAG
46162239 GTGAAAATGACCATGATACCCCTAG
1 GTGAAAATGACCATGATACCCCTAG
46162264 G
1 G
46162265 GATATGCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (25 bp):
GTGAAAATGACCATGATACCCCTAG
Found at i:46162319 original size:10 final size:10
Alignment explanation
Indices: 46162304--46162343 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
46162294 CTGGTTTGTA
46162304 CATGATATGC
1 CATGATATGC
46162314 CATGATATGC
1 CATGATATGC
*
46162324 ATATGATATGC
1 -CATGATATGC
46162335 CATGATATG
1 CATGATATG
46162344 TTCATATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (10 bp):
CATGATATGC
Found at i:46180993 original size:22 final size:22
Alignment explanation
Indices: 46180940--46180983 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
46180930 GAAAATGACC
* *
46180940 AAAATTAGTCAAAATTTATTAT
1 AAAATTAATTAAAATTTATTAT
46180962 AAAATTAATTAAAATTTATTAT
1 AAAATTAATTAAAATTTATTAT
46180984 GTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
AAAATTAATTAAAATTTATTAT
Found at i:46186272 original size:23 final size:23
Alignment explanation
Indices: 46186220--46186355 Score: 139
Period size: 23 Copynumber: 5.8 Consensus size: 23
46186210 GTCATGGTCG
*
46186220 GTAAGCTCTTACTGAGCTGATAAACA
1 GTAAGCTC-TAATGAGCTG--AAACA
* *
46186246 GTAAGC-CTATTGAGCTGGAAACG
1 GTAAGCTCTAATGAGCT-GAAACA
46186269 GTAAGCTCTAATGAGCTGAAACA
1 GTAAGCTCTAATGAGCTGAAACA
** * *
46186292 GTAAGCTCTTTTGAGCTGAATCG
1 GTAAGCTCTAATGAGCTGAAACA
*
46186315 GTAAGCTCCAATGAGCTGAAACA
1 GTAAGCTCTAATGAGCTGAAACA
* *
46186338 GTAAGCTCTTACGAGCTG
1 GTAAGCTCTAATGAGCTG
46186356 TGGTGAGTCC
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
23 67 0.73
24 17 0.18
25 2 0.02
26 6 0.07
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (23 bp):
GTAAGCTCTAATGAGCTGAAACA
Found at i:46186347 original size:46 final size:47
Alignment explanation
Indices: 46186217--46186347 Score: 185
Period size: 46 Copynumber: 2.8 Consensus size: 47
46186207 CGAGTCATGG
* *
46186217 TCGGTAAGCTCTTACTGAGCTGATAAACAGTAAGC-CTATTGAGCTGGAA
1 TCGGTAAGCTC-TAATGAGCTG--AAACAGTAAGCTCTTTTGAGCTGGAA
*
46186266 ACGGTAAGCTCTAATGAGCTGAAACAGTAAGCTCTTTTGAGCT-GAA
1 TCGGTAAGCTCTAATGAGCTGAAACAGTAAGCTCTTTTGAGCTGGAA
*
46186312 TCGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTT
1 TCGGTAAGCTCTAATGAGCTGAAACAGTAAGCTCTT
46186348 ACGAGCTGTG
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
46 48 0.63
47 9 0.12
48 9 0.12
49 10 0.13
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (47 bp):
TCGGTAAGCTCTAATGAGCTGAAACAGTAAGCTCTTTTGAGCTGGAA
Found at i:46189150 original size:16 final size:16
Alignment explanation
Indices: 46189131--46189161 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46189121 CTTCTTCACT
46189131 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
46189147 TACTTACTTACTTAA
1 TACTCACTTACTTAA
46189162 TCAAATTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:46189167 original size:20 final size:20
Alignment explanation
Indices: 46189128--46189167 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
46189118 AAACTTCTTC
* *
46189128 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
46189148 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
46189168 TATTAATACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:46189257 original size:24 final size:23
Alignment explanation
Indices: 46189236--46189282 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
46189226 ACCGTTACTC
*
46189236 TTCTAGCATGAACTTGTCTTACCT
1 TTCTAGCAT-AACTCGTCTTACCT
*
46189260 TTTTAGCATAACTCGTCTTACCT
1 TTCTAGCATAACTCGTCTTACCT
46189283 ACCATACCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.43
Consensus pattern (23 bp):
TTCTAGCATAACTCGTCTTACCT
Found at i:46189541 original size:55 final size:53
Alignment explanation
Indices: 46189413--46189547 Score: 146
Period size: 53 Copynumber: 2.5 Consensus size: 53
46189403 AACTTACCAT
* * * * *
46189413 TGCCATGTCTTGACATGCTCTTACATAGTATTATTGCCTTATGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGAATATTGCCTTATGAACTCACAAA
* * * * *
46189466 TGCCATGCCTCGGCATGGTCTTACATGGGACAT-TTGCCTTATAGTAACTTATAAA
1 TGCCATGTCTTGACATGGTCTTACATGGGA-ATATTGCCTTAT-G-AACTCACAAA
46189521 TGCCATGTCTTGACATGGTCTTACATG
1 TGCCATGTCTTGACATGGTCTTACATG
46189548 ATTTCCTTGC
Statistics
Matches: 66, Mismatches: 13, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
53 33 0.50
54 2 0.03
55 31 0.47
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGAATATTGCCTTATGAACTCACAAA
Found at i:46189558 original size:108 final size:108
Alignment explanation
Indices: 46189413--46189609 Score: 260
Period size: 108 Copynumber: 1.8 Consensus size: 108
46189403 AACTTACCAT
46189413 TGCCATGTCTTGACATGCTCTTACATAGTATTATTGCCTTATG-AA-CTCACCAA-TGCCATGCC
1 TGCCATGTCTTGACATGCTCTTACATAGTATTATTGCCTTA-GAAACCTCACCAATTGCCATGCC
*
46189475 TCGGCATGGTCTTACATGGGACATTTGCCTTATAGTAACTTATAAA
65 TCGGCATGGTCGTACAT--GACATTTGCCTTATAGTAACTTATAAA
* * * *
46189521 TGCCATGTCTTGACATGGTCTTACAT-G-ATTTCCTTGCCTTAGAAACCTTACCAATTTCCATGC
1 TGCCATGTCTTGACATGCTCTTACATAGTA-TT-ATTGCCTTAGAAACCTCACCAATTGCCATGC
*
46189584 CTTGGCATGGTCGTACATGACATTTG
64 CTCGGCATGGTCGTACATGACATTTG
46189610 TATCCTACAC
Statistics
Matches: 78, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
106 1 0.01
107 4 0.05
108 43 0.55
109 7 0.09
110 23 0.29
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (108 bp):
TGCCATGTCTTGACATGCTCTTACATAGTATTATTGCCTTAGAAACCTCACCAATTGCCATGCCT
CGGCATGGTCGTACATGACATTTGCCTTATAGTAACTTATAAA
Found at i:46189582 original size:55 final size:53
Alignment explanation
Indices: 46189356--46189603 Score: 158
Period size: 55 Copynumber: 4.7 Consensus size: 53
46189346 ACACGGGTAC
* * * *
46189356 CTTACC-ATTTCCATGACTTGTCATGGTCTTACATGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATAT-CTTGCCTTAGAAA
* * *
46189405 CTTACC-ATTGCCATGTCTTGACATGCTCTTACAT-AGTATTATTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGA-TA-TCTTGCCTTA-GAAA
* * * * *
46189458 CTCACCAA-TGCCATGCCTCGGCATGGTCTTACATGGGACAT-TTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACAT--GATATCTTGCC-T-TAGAAA
* * * *
46189513 CTTA-TAAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATAT-CTTGCCTTAGAAA
* * *
46189566 CCTTACCAATTTCCATGCCTTGGCATGGTCGTACATGA
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGA
46189604 CATTTGTATC
Statistics
Matches: 154, Mismatches: 26, Indels: 32
0.73 0.12 0.15
Matches are distributed among these distances:
49 34 0.22
50 1 0.01
52 2 0.01
53 42 0.27
54 12 0.08
55 62 0.40
56 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (53 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCTTGCCTTAGAAA
Found at i:46196816 original size:23 final size:23
Alignment explanation
Indices: 46196776--46196937 Score: 147
Period size: 23 Copynumber: 7.1 Consensus size: 23
46196766 AATCTCTATT
46196776 GAGCTGAA-CAGTAAGCTCTTTC
1 GAGCTGAATCAGTAAGCTCTTTC
* *
46196798 AAGCTGAATCTGTAAGCTCTATT-
1 GAGCTGAATCAGTAAGCTCT-TTC
*
46196821 GAGTTGAA-CAGTAAGCTCTTTC
1 GAGCTGAATCAGTAAGCTCTTTC
* *
46196843 GAGCTGAATCGGTAAGCTCCAATT-
1 GAGCTGAATCAGTAAGCT-C-TTTC
*
46196867 -AGCTGAAACAGTAAGCTCTTTC
1 GAGCTGAATCAGTAAGCTCTTTC
* **
46196889 GAGCTGAATCGGTAAGCTCCAAT-
1 GAGCTGAATCAGTAAGCT-CTTTC
* *
46196912 GAGCTGAAACAGTAAGCTCTTAC
1 GAGCTGAATCAGTAAGCTCTTTC
46196935 GAG
1 GAG
46196938 TTGTGGTGAG
Statistics
Matches: 110, Mismatches: 20, Indels: 19
0.74 0.13 0.13
Matches are distributed among these distances:
21 4 0.04
22 26 0.24
23 73 0.66
24 5 0.05
25 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (23 bp):
GAGCTGAATCAGTAAGCTCTTTC
Found at i:46196821 original size:45 final size:46
Alignment explanation
Indices: 46196763--46196937 Score: 248
Period size: 46 Copynumber: 3.8 Consensus size: 46
46196753 AACTGGAAAT
* *
46196763 GGTAATCTCTATTGAGCTG-AACAGTAAGCTCTTTCAAGCTGAATC
1 GGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTTTCGAGCTGAATC
* *
46196808 TGTAAGCTCTATTGAGTTG-AACAGTAAGCTCTTTCGAGCTGAATC
1 GGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTTTCGAGCTGAATC
*
46196853 GGTAAGCTCCAATT-AGCTGAAACAGTAAGCTCTTTCGAGCTGAATC
1 GGTAAGCT-CTATTGAGCTGAAACAGTAAGCTCTTTCGAGCTGAATC
* * *
46196899 GGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTTACGAG
1 GGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTTTCGAG
46196938 TTGTGGTGAG
Statistics
Matches: 117, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
45 55 0.47
46 62 0.53
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (46 bp):
GGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTTTCGAGCTGAATC
Found at i:46201125 original size:40 final size:40
Alignment explanation
Indices: 46201047--46201227 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
46201037 ACCCAAGTAT
* *
46201047 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
46201086 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
46201126 CTTCGGGACTTAGCCCGGATATAGTCACGAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
46201166 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
46201206 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
46201228 CATCCGAATA
Statistics
Matches: 128, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 11 0.09
40 116 0.91
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:46205595 original size:39 final size:40
Alignment explanation
Indices: 46205518--46205624 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
46205508 TAGCTCCTCG
* * *
46205518 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATATTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATATAAACTCA
* *
46205558 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
**
46205597 CACGAATGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
46205625 ATTAGTATCT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 25 0.43
40 33 0.57
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
Found at i:46205623 original size:79 final size:80
Alignment explanation
Indices: 46205524--46205744 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
46205514 CTCGTTCAAG
* * * ** * *
46205524 TGCCTTCGGGACATAGCCCGG-TTATATTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
46205587 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
46205603 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
46205668 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
46205683 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
46205745 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
79 36 0.31
80 75 0.64
81 6 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:46205675 original size:80 final size:80
Alignment explanation
Indices: 46205564--46205744 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
46205554 CTCATTCAAT
* * *
46205564 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
46205627 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
46205643 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
46205707 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
46205724 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
46205745 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:46205704 original size:40 final size:40
Alignment explanation
Indices: 46205561--46205744 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
46205551 TAACTCATTC
* *
46205561 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
46205601 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
46205641 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
46205681 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
46205722 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46205745 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:46213480 original size:79 final size:79
Alignment explanation
Indices: 46213381--46213600 Score: 205
Period size: 79 Copynumber: 2.8 Consensus size: 79
46213371 CTCGTTCAAG
* * ** * *
46213381 TGCCTTCGGGACATAGCCCGGTCATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACATAACCCGG-AATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-AT
*
46213445 TAA-AACTCGCACGAA
64 TAATAACTCGCACAAA
* * * *
46213460 TGCCTTCGGGACTTAACCCGGAATTGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATTA
1 TGCCTTCGGGACATAACCCGGAATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATTA
46213525 ATAACTCGCACAAA
66 ATAACTCGCACAAA
* * ** * * *
46213539 TACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGA-ATAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
46213601 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
78 16 0.14
79 68 0.59
80 26 0.22
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
TGCCTTCGGGACATAACCCGGAATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATTA
ATAACTCGCACAAA
Found at i:46213560 original size:40 final size:40
Alignment explanation
Indices: 46213418--46213600 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
46213408 TAACTCATTC
* *
46213418 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
46213458 AATGCCTTCGGGACTTAACCCGGAATT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
46213497 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
46213537 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
46213578 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46213601 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
39 41 0.34
40 68 0.57
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:46216805 original size:27 final size:27
Alignment explanation
Indices: 46216704--46216810 Score: 137
Period size: 27 Copynumber: 3.9 Consensus size: 27
46216694 AGGAAGCGTC
* *
46216704 CTGGTGGCTATGCCACAATAATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
46216731 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
46216758 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
46216786 CTGGTGACTCTGTCACATTATCTGT
1 CTGGTGGCTCTGCCACATTATCTGT
46216811 TTTGGTAGCC
Statistics
Matches: 72, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
26 2 0.03
27 53 0.74
28 17 0.24
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:46216808 original size:54 final size:54
Alignment explanation
Indices: 46216704--46216816 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
46216694 AGGAAGCGTC
*
46216704 CTGGTGGCTATGCCACAATAATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATAATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
46216758 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATAATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
*
46216812 TTGGT
1 CTGGT
46216817 AGCCATGCTG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATAATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:46220405 original size:51 final size:51
Alignment explanation
Indices: 46220350--46220449 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
46220340 CTACCTTATA
46220350 ACATGTAACACATCCATAATGAACTCGAACC-TCTCAACGAGCTCAGATGTT
1 ACATGTAACACATCCATAATGAACTCGAACCAT-TCAACGAGCTCAGATGTT
* * * *
46220401 ACATGTATCGCATCCATTATGAACTCGAACCATTCAACGAGCTCGGATG
1 ACATGTAACACATCCATAATGAACTCGAACCATTCAACGAGCTCAGATG
46220450 CTCACATCCA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 43 0.98
52 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (51 bp):
ACATGTAACACATCCATAATGAACTCGAACCATTCAACGAGCTCAGATGTT
Found at i:46220520 original size:42 final size:43
Alignment explanation
Indices: 46220421--46220576 Score: 143
Period size: 43 Copynumber: 3.7 Consensus size: 43
46220411 CATCCATTAT
* * * * ** ** *
46220421 GAACTCGAACCATTCAACGAGCTCGGATGCTCACATCCAAAAT
1 GAACTCGGACCACTCAACGAGCTCGAATGCTTACATATATCAC
* * *
46220464 GAACTCAGACCACTCAAGGAGCTCGGATGC-TACATATATCAC
1 GAACTCGGACCACTCAACGAGCTCGAATGCTTACATATATCAC
* * * *
46220506 GAACTTGGACCACTCAACAAGTTCGAATTCTTACATATATCAC
1 GAACTCGGACCACTCAACGAGCTCGAATGCTTACATATATCAC
* *
46220549 GAACTCGGACCATTCAATGAGCTCGAAT
1 GAACTCGGACCACTCAACGAGCTCGAAT
46220577 TTCTTAATTC
Statistics
Matches: 90, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
42 29 0.32
43 61 0.68
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.22
Consensus pattern (43 bp):
GAACTCGGACCACTCAACGAGCTCGAATGCTTACATATATCAC
Found at i:46222620 original size:20 final size:20
Alignment explanation
Indices: 46222595--46222633 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
46222585 AAAGTGAGAC
46222595 TGTTGAAATCTAATATCATG
1 TGTTGAAATCTAATATCATG
46222615 TGTTGAAATCTAATATCAT
1 TGTTGAAATCTAATATCAT
46222634 TGTCATTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (20 bp):
TGTTGAAATCTAATATCATG
Found at i:46223365 original size:18 final size:18
Alignment explanation
Indices: 46223342--46223378 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
46223332 CTTTTAAGAA
46223342 GTTGAATTTTGATCTTAT
1 GTTGAATTTTGATCTTAT
46223360 GTTGAATTTTGATCTTAT
1 GTTGAATTTTGATCTTAT
46223378 G
1 G
46223379 CAAGCAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.05, G:0.19, T:0.54
Consensus pattern (18 bp):
GTTGAATTTTGATCTTAT
Found at i:46235937 original size:18 final size:20
Alignment explanation
Indices: 46235895--46235931 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
46235885 ATATTTTATG
*
46235895 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
46235914 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
46235932 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:46238097 original size:46 final size:46
Alignment explanation
Indices: 46238045--46238365 Score: 417
Period size: 46 Copynumber: 7.0 Consensus size: 46
46238035 AGTGTGCTCT
*
46238045 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
46238091 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
46238137 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
46238183 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *** *
46238229 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
46238275 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * * * *
46238321 ATGACAAAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
46238366 TCATGTCAAA
Statistics
Matches: 248, Mismatches: 26, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
46 215 0.87
47 33 0.13
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:46252739 original size:66 final size:67
Alignment explanation
Indices: 46252613--46252739 Score: 186
Period size: 66 Copynumber: 1.9 Consensus size: 67
46252603 CGGGATGTAT
* * * *
46252613 ACCATGTAGACAAGAGAGCTACAGGATAAATGTAGCTAGGTCACATGTGTGGTTCCAAGTGAAGG
1 ACCATGTAGACAACAGAGCTACAGGATAAATGTAGCTAGGTCACATGGGTGGTACAAAGTGAAGG
46252678 AC
66 AC
*
46252680 ACCATGTAGACAACAGAGCTACGAGG-TAAA-GTGGCTAGGTCACATGGGTGGTACAAAGTG
1 ACCATGTAGACAACAGAGCTAC-AGGATAAATGTAGCTAGGTCACATGGGTGGTACAAAGTG
46252740 TTCATGTCCA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
66 26 0.48
67 25 0.46
68 3 0.06
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.20
Consensus pattern (67 bp):
ACCATGTAGACAACAGAGCTACAGGATAAATGTAGCTAGGTCACATGGGTGGTACAAAGTGAAGG
AC
Found at i:46255775 original size:31 final size:31
Alignment explanation
Indices: 46255737--46255846 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
46255727 CTCAACATAT
*
46255737 ACTGGGCCGAAGCCTTTGCATTATTCATGTC
1 ACTGGGCCGAAGCCTTTCCATTATTCATGTC
* *
46255768 ACTGGGCCGAAGCCTTTTCATTACTCATGTC
1 ACTGGGCCGAAGCCTTTCCATTATTCATGTC
*
46255799 ACTGGGCCGAAGCCTTTCCATTATTCATATC
1 ACTGGGCCGAAGCCTTTCCATTATTCATGTC
46255830 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
46255847 ACTGTAAACG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.31
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTCCATTATTCATGTC
Found at i:46256100 original size:25 final size:25
Alignment explanation
Indices: 46256066--46256135 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
46256056 CTCTTTTAAT
*
46256066 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
* * *
46256091 AACTGGGGCATAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
46256116 AACTAGGGCAAAACCCTTTT
1 AACTAGGGCAAAGCCCTTTT
46256136 GCACTTCCTC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:46256199 original size:11 final size:11
Alignment explanation
Indices: 46256183--46256251 Score: 67
Period size: 11 Copynumber: 6.7 Consensus size: 11
46256173 TATATGAATT
46256183 TATCATGTGCA
1 TATCATGTGCA
*
46256194 TATCA--TACA
1 TATCATGTGCA
*
46256203 TGTCATGTGCA
1 TATCATGTGCA
*
46256214 TATCA--TACA
1 TATCATGTGCA
46256223 TATCATGTGCA
1 TATCATGTGCA
46256234 TATCATGT-CA
1 TATCATGTGCA
*
46256244 AATCATGT
1 TATCATGT
46256252 ATATCAAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
9 15 0.32
10 9 0.19
11 23 0.49
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:46256210 original size:20 final size:20
Alignment explanation
Indices: 46256183--46256239 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
46256173 TATATGAATT
46256183 TATCATGTGCATATCATACA
1 TATCATGTGCATATCATACA
*
46256203 TGTCATGTGCATATCATACA
1 TATCATGTGCATATCATACA
46256223 TATCATGTGCATATCAT
1 TATCATGTGCATATCAT
46256240 GTCAAATCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
TATCATGTGCATATCATACA
Found at i:46266305 original size:12 final size:12
Alignment explanation
Indices: 46266288--46266313 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46266278 AACATCATCA
46266288 AAATAAATGTCC
1 AAATAAATGTCC
46266300 AAATAAATGTCC
1 AAATAAATGTCC
46266312 AA
1 AA
46266314 TGTCCATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (12 bp):
AAATAAATGTCC
Found at i:46273094 original size:24 final size:24
Alignment explanation
Indices: 46273067--46273114 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
46273057 TAAAGAAAAA
46273067 AGAAAACATGCCACAAGAGCAGAC
1 AGAAAACATGCCACAAGAGCAGAC
*** *
46273091 AGAAAGTGTGCCACAAGAGTAGAC
1 AGAAAACATGCCACAAGAGCAGAC
46273115 TAAAAAAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.46, C:0.21, G:0.25, T:0.08
Consensus pattern (24 bp):
AGAAAACATGCCACAAGAGCAGAC
Found at i:46279109 original size:19 final size:19
Alignment explanation
Indices: 46279085--46279130 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
46279075 TGTTAAATAC
46279085 AATTTGATG-TATATGATTT
1 AATTTGATGTTATATGA-TT
*
46279104 AATTTG-TGTTCTATGATT
1 AATTTGATGTTATATGATT
46279122 AATTTGATG
1 AATTTGATG
46279131 AAAGTTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.28, C:0.02, G:0.17, T:0.52
Consensus pattern (19 bp):
AATTTGATGTTATATGATT
Found at i:46279232 original size:19 final size:18
Alignment explanation
Indices: 46279195--46279233 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
46279185 TATAACTTCT
* *
46279195 ATTAAATATAAATATCAC
1 ATTAAATAAAAATAACAC
46279213 ATTAAATAAAAAATAACAC
1 ATTAAAT-AAAAATAACAC
46279232 AT
1 AT
46279234 ACAACACGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (18 bp):
ATTAAATAAAAATAACAC
Found at i:46290319 original size:43 final size:43
Alignment explanation
Indices: 46290272--46290358 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
46290262 AGGTTAAATC
* *
46290272 CAACAACCCATGTTTATCACCTCCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCACCTCCTCTTTTTAAATTCTTTTTT
* ** *
46290315 CAACAACCTAAGATTATCTTCTCCTTTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCACCTCCTCTTTTTAAATTCTTTTTT
46290358 C
1 C
46290359 TAGGATAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.24, C:0.25, G:0.02, T:0.48
Consensus pattern (43 bp):
CAACAACCCAAGATTATCACCTCCTCTTTTTAAATTCTTTTTT
Found at i:46290387 original size:56 final size:56
Alignment explanation
Indices: 46290315--46290461 Score: 190
Period size: 57 Copynumber: 2.6 Consensus size: 56
46290305 ATTCTTTTTT
*
46290315 CAACAACCTAAGATTATCTTCTCCTTTTTTTAAATTCTT-TTTTCTAGGATAAAAAC
1 CAACAACCCAAGATTATCTTCTCCTTTTTTTAAATT-TTCTTTTCTAGGATAAAAAC
* * *
46290371 CAACAACCCAATATTATCTTTTCCTTTTTTAAAAATTTTCTTTTCTAGGATAAAAAC
1 CAACAACCCAAGATTATCTTCTCCTTTTTT-TAAATTTTCTTTTCTAGGATAAAAAC
* *
46290428 CAAC-ATCCAAGGATTATATTCTCCTCTTTTTTAA
1 CAACAACCCAA-GATTATCTTCTCCT-TTTTTTAA
46290462 GCAGAATTTT
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
56 34 0.44
57 39 0.50
58 5 0.06
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.42
Consensus pattern (56 bp):
CAACAACCCAAGATTATCTTCTCCTTTTTTTAAATTTTCTTTTCTAGGATAAAAAC
Found at i:46294760 original size:27 final size:27
Alignment explanation
Indices: 46294700--46294752 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
46294690 TTAGCCTATT
* *
46294700 GACCATTTGGATTATTATTGAGACCAA
1 GACCATTTGGATTATCACTGAGACCAA
*
46294727 GACCATTTGGATTATCACTGCGACCA
1 GACCATTTGGATTATCACTGAGACCA
46294753 TGATCATTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (27 bp):
GACCATTTGGATTATCACTGAGACCAA
Found at i:46299266 original size:42 final size:43
Alignment explanation
Indices: 46299220--46299303 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
46299210 TGTAAGGACA
* * * * *
46299220 TGTCTGGGACATTGGTATCG-TATTTGATTTCGTGTAAGACCT
1 TGTCTGGGACAGTGGCATCGATACTTGATTACATGTAAGACCT
*
46299262 TGTCTGGGATAGTGGCATCGATACTTGATTACATGTAAGACC
1 TGTCTGGGACAGTGGCATCGATACTTGATTACATGTAAGACC
46299304 GCGTTTGGGA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
42 17 0.49
43 18 0.51
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (43 bp):
TGTCTGGGACAGTGGCATCGATACTTGATTACATGTAAGACCT
Found at i:46302909 original size:40 final size:41
Alignment explanation
Indices: 46302849--46303069 Score: 282
Period size: 40 Copynumber: 5.6 Consensus size: 41
46302839 TATTCGAATG
*
46302849 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
46302889 ATATCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCT-AG-TGACT
*
46302929 ATATCCGGGCTAAGA-CCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
46302969 ATATCCGGGCTAA-CTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
46303009 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
46303049 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
46303070 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 11, Indels: 21
0.83 0.06 0.11
Matches are distributed among these distances:
38 1 0.01
39 16 0.10
40 137 0.86
41 6 0.04
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:46314605 original size:21 final size:20
Alignment explanation
Indices: 46314581--46314626 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
46314571 CGAAATGCAA
46314581 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
46314602 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
46314622 T-AACC
1 TCAACC
46314627 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:46315486 original size:12 final size:12
Alignment explanation
Indices: 46315469--46315504 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
46315459 GAAAATTAAT
46315469 TAAAATTTATTA
1 TAAAATTTATTA
46315481 TAAAATTTATTA
1 TAAAATTTATTA
*
46315493 TAAAATTAATTA
1 TAAAATTTATTA
46315505 AAATTCATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
TAAAATTTATTA
Found at i:46315486 original size:22 final size:22
Alignment explanation
Indices: 46315450--46315515 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
46315440 TAATTCTGTC
* *
46315450 AAAAATAATGAAAATTAATTA-
1 AAAATTAATTAAAATTAATTAT
* * *
46315471 AAATTTATTATAAAATTTATTAT
1 AAAATTAAT-TAAAATTAATTAT
*
46315494 AAAATTAATTAAAATTCATTAT
1 AAAATTAATTAAAATTAATTAT
46315516 TTTAATAATT
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 6 0.17
22 22 0.63
23 7 0.20
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (22 bp):
AAAATTAATTAAAATTAATTAT
Found at i:46324332 original size:5 final size:5
Alignment explanation
Indices: 46324322--46324356 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
46324312 TTTAGCCGAC
46324322 TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT
1 TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT
46324357 CCCTCTTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (5 bp):
TCTCT
Found at i:46326057 original size:49 final size:49
Alignment explanation
Indices: 46325985--46326259 Score: 306
Period size: 49 Copynumber: 5.5 Consensus size: 49
46325975 TTGATACGCA
* *
46325985 TAGTAGCCTACACTTTGTACTACACATGTGATCAACAATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCAACAATTCGGTACACG
46326034 TAGTAGCCTGCACTTAGTACTACACATGTGATCAACAATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCAACAATTCGGTACACG
* * * * *
46326083 TAGTAGCCTGTACTTAGTACTACACACGTGACCTCATC-ATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGA--TCAACAATTCGGTACACG
* * *
46326133 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC-ATT-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGATC-AA--CAATTCG-GTACACG
* * * *
46326184 TAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTAT-GATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-TCAACAAT-TCGGTACACG
* *
46326234 TAGTAGCCTACAGTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
46326260 CGTGTTTTCA
Statistics
Matches: 195, Mismatches: 22, Indels: 17
0.83 0.09 0.07
Matches are distributed among these distances:
48 2 0.01
49 78 0.40
50 70 0.36
51 44 0.23
52 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGATCAACAATTCGGTACACG
Found at i:46326238 original size:101 final size:97
Alignment explanation
Indices: 46325975--46326263 Score: 334
Period size: 101 Copynumber: 2.9 Consensus size: 97
46325965 CCAAAGCTAT
* * *
46325975 TTGA-TACGCATAGTAGCCTACACTTTGTACTACACATGTGA-TCAACAATTCGGTACACGTAGT
1 TTGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTCAAC-ATT-GATACACGTAGT
*
46326038 AGCCTGCACTTAGTACTACACATGTGATCAACAA
64 AGCCTGCACTTAGTACTACACACGTGATCAACAA
* * * * * *
46326072 TTCG-GTACACGTAGTAGCCTGTACTTAGTACTACACACGTGACCTCATCATCCGATACACGTAG
1 TT-GAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA-CTCAACAT-TGATACACGTAG
46326136 TAGCCTGCACTTAGTACTACACACGTGATCGAAGTC-A
63 TAGCCTGCACTTAGTACTACACACGTGATC-AA--CAA
* *
46326173 TTGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGATACACGTAGT
1 TTGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTCAACA-T-TGATACACGTAGT
* *
46326238 AGCCTACAGTTAGTACTACACACGTG
64 AGCCTGCACTTAGTACTACACACGTG
46326264 TTTTCACAAT
Statistics
Matches: 161, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
97 2 0.01
98 32 0.20
99 41 0.25
100 12 0.07
101 73 0.45
102 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (97 bp):
TTGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTCAACATTGATACACGTAGTAG
CCTGCACTTAGTACTACACACGTGATCAACAA
Found at i:46333608 original size:51 final size:50
Alignment explanation
Indices: 46333482--46333670 Score: 184
Period size: 50 Copynumber: 3.8 Consensus size: 50
46333472 AGTCGAAGCT
* * * **
46333482 ATCTAATACGCATAGTAGCCTACACTTAGTACTACACACGTGACCTCATC
1 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCGAATC
* * * *
46333532 ATCTGATACACGTAGTAGCCTGCACTTTGTACTACACATGTGATCGAAGTC
1 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCGAA-TC
* **
46333583 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAA-C
1 ATCTGA-TACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCGAATC
* *** *
46333632 AGTATGATACATGTAGTAGCCTACACTTAGTACTACACA
1 A-TCTGATACGCATAGTAGCCTGCACTTAGTACTACACA
46333671 CATCCATTCA
Statistics
Matches: 115, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
49 2 0.02
50 71 0.62
51 42 0.37
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (50 bp):
ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCGAATC
Found at i:46333649 original size:101 final size:101
Alignment explanation
Indices: 46333488--46333670 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 101
46333478 AGCTATCTAA
* * *
46333488 TACGCATAGTAGCCTACACTTAGTACTACACACGTGACCTCATCATCTGATACACGTAGTAGCCT
1 TACGCATAGTAGCCTACACTTAGTACTACACACGCGACCTCAACATATGATACACGTAGTAGCCT
* *
46333553 GCACTTTGTACTACACATGTGATCGAAGTCATTGAG
66 ACACTTAGTACTACACATGTGATCGAAGTCATTGAG
* * * *
46333589 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CTTAACAGTATGATACATGTAGTAGCC
1 TACGCATAGTAGCCTACACTTAGTACTACACACGCGACCTCAACA-TATGATACACGTAGTAGCC
46333653 TACACTTAGTACTACACA
65 TACACTTAGTACTACACA
46333671 CATCCATTCA
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 5 0.07
101 67 0.93
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (101 bp):
TACGCATAGTAGCCTACACTTAGTACTACACACGCGACCTCAACATATGATACACGTAGTAGCCT
ACACTTAGTACTACACATGTGATCGAAGTCATTGAG
Found at i:46336563 original size:17 final size:17
Alignment explanation
Indices: 46336541--46336575 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
46336531 ATTCCCTTAT
*
46336541 TCAAGATTAAGTTGCAA
1 TCAAGATTAAGCTGCAA
46336558 TCAAGATTAAGCTGCAA
1 TCAAGATTAAGCTGCAA
46336575 T
1 T
46336576 TTTTGTCCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (17 bp):
TCAAGATTAAGCTGCAA
Found at i:46339564 original size:3 final size:3
Alignment explanation
Indices: 46339556--46339588 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
46339546 AAGCATAAAC
*
46339556 TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
46339589 CATTGGAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Done.