Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 146 of 352
Found at i:47825642 original size:80 final size:81
Alignment explanation
Indices: 47825505--47825685 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
47825495 TTGAATGCTG
* * *
47825505 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
47825569 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
47825585 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
47825646 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
47825665 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
47825686 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:47825709 original size:39 final size:38
Alignment explanation
Indices: 47825586--47825735 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
47825576 GTTATTAATT
* ** * *
47825586 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
47825626 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
47825665 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
47825705 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
47825736 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:47831328 original size:17 final size:18
Alignment explanation
Indices: 47831297--47831331 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
47831287 TGAACGTGAA
*
47831297 TTTGGAAAAGGGAAAAAT
1 TTTGGAAAAGAGAAAAAT
47831315 TTTGGAAAA-AGAAAAAT
1 TTTGGAAAAGAGAAAAAT
47831332 AAAATTGACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (18 bp):
TTTGGAAAAGAGAAAAAT
Found at i:47833998 original size:40 final size:40
Alignment explanation
Indices: 47833893--47834037 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
47833883 GCTACTCGTT
*
47833893 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
47833933 CAAATGCCTTCGGGAGTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
47833973 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACGTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
47834014 CAAA-GCCTTC-GGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47834038 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
39 13 0.14
40 68 0.75
41 10 0.11
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:47842055 original size:40 final size:40
Alignment explanation
Indices: 47841910--47842055 Score: 154
Period size: 40 Copynumber: 3.6 Consensus size: 40
47841900 GCTACTCGTT
* *
47841910 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
* * * * *
47841950 CAAATGCCTTCGGGAGTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
47841990 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACGTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
47842031 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47842056 CATCATTCAA
Statistics
Matches: 86, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 3 0.03
40 72 0.84
41 11 0.13
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:47845111 original size:31 final size:30
Alignment explanation
Indices: 47845003--47845117 Score: 105
Period size: 31 Copynumber: 3.8 Consensus size: 30
47844993 ATAAATCTCA
* *
47845003 AAAT-TATACATG-AACTTTGATTTAATGTGC
1 AAATGTATACATGAAACTTTAATTT--GGTGC
*
47845033 AATTGTATACATG-AACTTTAATTTGGTGC
1 AAATGTATACATGAAACTTTAATTTGGTGC
*
47845062 -AAT-TATACACGTGAAACTTTAATTGTGGTTC
1 AAATGTATACA--TGAAACTTTAATT-TGGTGC
*
47845093 AAATGTATACTTGAAACTTTAATTT
1 AAATGTATACATGAAACTTTAATTT
47845118 TGATTTAATC
Statistics
Matches: 72, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
27 6 0.08
28 2 0.03
29 6 0.08
30 14 0.19
31 36 0.50
32 3 0.04
33 5 0.07
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.41
Consensus pattern (30 bp):
AAATGTATACATGAAACTTTAATTTGGTGC
Found at i:47852597 original size:17 final size:18
Alignment explanation
Indices: 47852558--47852600 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
47852548 GGCCTAGAAT
47852558 CCCACACGCCCGTGTGGG
1 CCCACACGCCCGTGTGGG
* *
47852576 CCCACAGGCCCGTGT-TG
1 CCCACACGCCCGTGTGGG
47852593 CCCACACG
1 CCCACACG
47852601 ACCCAAACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.14, C:0.47, G:0.28, T:0.12
Consensus pattern (18 bp):
CCCACACGCCCGTGTGGG
Found at i:47855909 original size:33 final size:32
Alignment explanation
Indices: 47855860--47855923 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
47855850 CTTGCTGCAA
* *
47855860 TCTGGTGGCTTTGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
47855893 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
47855924 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:47855937 original size:27 final size:26
Alignment explanation
Indices: 47855885--47855944 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
47855875 ACATATATAT
*
47855885 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
47855911 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
47855938 ATATCTG
1 ATATCTG
47855945 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:47867604 original size:39 final size:39
Alignment explanation
Indices: 47867561--47867704 Score: 200
Period size: 39 Copynumber: 3.7 Consensus size: 39
47867551 ACTAGCTCGA
* * * * *
47867561 AGCCTGCGGGA-CTTTAGCCCGGAAATATTTCCAGCACGT
1 AGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCACAT
47867600 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
*
47867639 AGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
* *
47867678 AGCCTACGGACCCTAAGTCCGGATATA
1 AGCCTGCGGACCTTAAGTCCGGATATA
47867705 CATCACTGAA
Statistics
Matches: 97, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
38 3 0.03
39 94 0.97
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (39 bp):
AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
Found at i:47872052 original size:12 final size:12
Alignment explanation
Indices: 47872035--47872063 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
47872025 CCACACATGC
47872035 CCGTGTGCTAGG
1 CCGTGTGCTAGG
47872047 CCGTGTGCTAGG
1 CCGTGTGCTAGG
47872059 CCGTG
1 CCGTG
47872064 GAACTCACTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.28, G:0.41, T:0.24
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:47873552 original size:89 final size:89
Alignment explanation
Indices: 47873395--47873568 Score: 296
Period size: 89 Copynumber: 2.0 Consensus size: 89
47873385 TTACCTCAAC
* * *
47873395 AACTAGGGTTGTAGTAGTAGAGTCGAACTAATTCGAAGCTTTATCTTTTCCTTGATTTAAGTCTA
1 AACTAGGATTGTAGTAGTAGAGTCGAACTAATTCGAAGCTTCAGCTTTTCCTTGATTTAAGTCTA
47873460 ATTGTGGTTTATCTTGATCTCGGT
66 ATTGTGGTTTATCTTGATCTCGGT
*
47873484 AACTAGGATTGTAGTAGTAGAGTTGAACTAATTCGAAGCTTCAGCTTTTCCTTGATTTAAGT-TC
1 AACTAGGATTGTAGTAGTAGAGTCGAACTAATTCGAAGCTTCAGCTTTTCCTTGATTTAAGTCT-
47873548 AATTGTGGTTTATCTTGATCT
65 AATTGTGGTTTATCTTGATCT
47873569 AAATAAATAA
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
88 1 0.01
89 79 0.99
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (89 bp):
AACTAGGATTGTAGTAGTAGAGTCGAACTAATTCGAAGCTTCAGCTTTTCCTTGATTTAAGTCTA
ATTGTGGTTTATCTTGATCTCGGT
Found at i:47881875 original size:46 final size:46
Alignment explanation
Indices: 47881707--47881882 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
47881697 TGTAACCCGC
* * * * * * *
47881707 CCATAAGAGAAATCGGACTCAAATCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
47881753 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
47881803 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
47881846 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
47881883 TGCCCAAATA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.56
47 29 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:47881901 original size:46 final size:46
Alignment explanation
Indices: 47881758--47881901 Score: 122
Period size: 46 Copynumber: 3.1 Consensus size: 46
47881748 CGCATCCATG
* *
47881758 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-TTC-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATATCCT
* * *
47881806 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC----ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATATCC-T
47881850 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
47881897 AGTGA
1 AGTGA
47881902 CATGTCACTT
Statistics
Matches: 77, Mismatches: 8, Indels: 24
0.71 0.07 0.22
Matches are distributed among these distances:
42 2 0.03
44 4 0.05
45 1 0.01
46 33 0.43
47 29 0.38
48 5 0.06
49 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
Found at i:47887301 original size:40 final size:40
Alignment explanation
Indices: 47887179--47887362 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
47887169 TATTTGAATG
* *
47887179 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * * * *
47887219 ATATCCGGACTAAAATCCAAAGACATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* *
47887259 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
47887299 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
*
47887339 ATATCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
47887363 CCTTGTGCGA
Statistics
Matches: 120, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 117 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:47887390 original size:40 final size:40
Alignment explanation
Indices: 47887179--47887400 Score: 216
Period size: 40 Copynumber: 5.5 Consensus size: 40
47887169 TATTTGAATG
* * * *
47887179 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
47887219 ATATCCGGACTAAAATCCAAAGACATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGACT
* *
47887259 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
47887299 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* ** **
47887339 ATATCTGGGCTAAGACCCGAAGGCCCTTGTGCGAGTGGTTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GACT
47887380 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
47887401 ATACTTGGTT
Statistics
Matches: 148, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
39 2 0.01
40 138 0.93
41 8 0.05
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:47887398 original size:120 final size:120
Alignment explanation
Indices: 47887179--47887400 Score: 304
Period size: 120 Copynumber: 1.9 Consensus size: 120
47887169 TATTTGAATG
* * *
47887179 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAAATCCAAAGACA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATATCCGGACTAAAACCCAAAGACA
* *
47887244 TTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
66 CTTGTGCGAGTGGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * * * *
47887299 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATATCTGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATATCCGGACTAAAACCCAAAGACA
*
47887364 CTTGTGCGAGTGGTTTATATCC-GGCTAA-ATCCCGAAG
66 CTTGTGCGAGTGG-CTATATCCGGGCTAAGA-CCCGAAG
47887401 ATACTTGGTT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
119 1 0.01
120 80 0.91
121 7 0.08
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (120 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATATCCGGACTAAAACCCAAAGACA
CTTGTGCGAGTGGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:47895334 original size:42 final size:41
Alignment explanation
Indices: 47895190--47895345 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 41
47895180 TATTGAATGA
* *
47895190 TATCCGGGCTAAGTCCG-AAGGCTTTTATGCTAGTGACTAT
1 TATCCGGGCTAAGTCCGAAAGGCATTTATGCTAGTGACTAC
* * * *
47895230 TATCCGGACTAAATCC-AAA-GCATCTTGTGCGAGTTG-CTAC
1 TATCCGGGCTAAGTCCGAAAGGCAT-TTATGCTAG-TGACTAC
* * *
47895270 TATCCGGGCTAAGACCCGAAAGGCATTTGTGCTAGCGACTA-
1 TATCCGGGCTAAG-TCCGAAAGGCATTTATGCTAGTGACTAC
47895311 TATCCGGGCTAAGTCCCGAAAAGGCATTTATGCTA
1 TATCCGGGCTAAGT-CCG-AAAGGCATTTATGCTA
47895346 TGCAGTTGGA
Statistics
Matches: 94, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
39 3 0.03
40 37 0.39
41 21 0.22
42 29 0.31
43 4 0.04
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (41 bp):
TATCCGGGCTAAGTCCGAAAGGCATTTATGCTAGTGACTAC
Found at i:47895933 original size:26 final size:25
Alignment explanation
Indices: 47895889--47895937 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
47895879 TTTAAATTGT
47895889 TTGATTATAGCACTAAGTGTGCGAG
1 TTGATTATAGCACTAAGTGTGCGAG
*
47895914 TTGATTATAAGCACTGAGTGTGCG
1 TTGATTAT-AGCACTAAGTGTGCG
47895938 GACTTAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.33
Consensus pattern (25 bp):
TTGATTATAGCACTAAGTGTGCGAG
Found at i:47895948 original size:26 final size:26
Alignment explanation
Indices: 47895889--47895948 Score: 61
Period size: 26 Copynumber: 2.3 Consensus size: 26
47895879 TTTAAATTGT
* *
47895889 TTGATTAT-AGCACTAAGTGTGCGAG
1 TTGAATATAAGCACTAAGTGTGCGAC
* *
47895914 TTGATTATAAGCACTGAGTGTGCGGAC
1 TTGAATATAAGCACTAAGTGTGC-GAC
47895941 TT-AATATA
1 TTGAATATA
47895949 TATTTTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 8 0.27
26 18 0.60
27 4 0.13
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (26 bp):
TTGAATATAAGCACTAAGTGTGCGAC
Found at i:47903912 original size:27 final size:28
Alignment explanation
Indices: 47903828--47903925 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
47903818 CATGAGATTG
* * * *
47903828 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
47903857 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
47903885 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
47903912 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
47903926 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:47903936 original size:27 final size:27
Alignment explanation
Indices: 47903856--47903938 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
47903846 TAAATTGTAC
* *
47903856 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
47903884 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
47903911 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
47903938 A
1 A
47903939 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:47903939 original size:29 final size:27
Alignment explanation
Indices: 47903828--47903939 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
47903818 CATGAGATTG
** * *
47903828 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
47903857 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
47903885 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
47903912 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
47903940 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:47908423 original size:40 final size:39
Alignment explanation
Indices: 47908227--47908409 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 39
47908217 GAATGATGTC
* * * *
47908227 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAT
* *
47908266 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 -CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
47908306 CTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAT
1 C-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
47908345 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
*
47908386 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
47908410 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:47908431 original size:79 final size:79
Alignment explanation
Indices: 47908278--47908442 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
47908268 GGACTAAGAT
* **
47908278 CCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
47908343 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
47908357 CCGAAGGCATTTGTGCGAGTTACTATAATC-GGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCTGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
47908420 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
47908436 CCGAAGG
1 CCGAAGG
47908443 TACGTGACTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
79 48 0.64
80 27 0.36
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:47916184 original size:21 final size:21
Alignment explanation
Indices: 47916158--47916199 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
47916148 TTTGACCAAG
47916158 TTAACTTATAGATGCCATTAT
1 TTAACTTATAGATGCCATTAT
47916179 TTAACTTATAGATGCCATTAT
1 TTAACTTATAGATGCCATTAT
47916200 ACCAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43
Consensus pattern (21 bp):
TTAACTTATAGATGCCATTAT
Found at i:47924580 original size:47 final size:47
Alignment explanation
Indices: 47924526--47924655 Score: 161
Period size: 47 Copynumber: 2.8 Consensus size: 47
47924516 GTGCGAATAA
* * * ** *
47924526 TACCTTGATTTGGCTATGGGTCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGAGAGAAGT
* * *
47924573 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGAGAGAAGT
* *
47924620 TACCTTGGTTGGGCTATGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
47924656 TATCGGTTGT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.21, C:0.15, G:0.31, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGAGAGAAGT
Found at i:47926588 original size:17 final size:17
Alignment explanation
Indices: 47926563--47926603 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
47926553 TCGCAGTCTC
* *
47926563 TCTCTGTTTTGCTACAG
1 TCTCAGTTTTACTACAG
47926580 TCTCAGTTTTACTACAG
1 TCTCAGTTTTACTACAG
*
47926597 TTTCAGT
1 TCTCAGT
47926604 ATACACTGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.17, C:0.22, G:0.15, T:0.46
Consensus pattern (17 bp):
TCTCAGTTTTACTACAG
Found at i:47942858 original size:18 final size:18
Alignment explanation
Indices: 47942835--47942872 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
47942825 TATCCTTGTA
*
47942835 TTTTTTTATT-ATTT-TC
1 TTTTTTTTTTAATTTCTC
47942851 TTTTTTTTTTAATTTCTC
1 TTTTTTTTTTAATTTCTC
47942869 TTTT
1 TTTT
47942873 CTTTCTTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 9 0.47
17 4 0.21
18 6 0.32
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTTTTTTAATTTCTC
Found at i:47944303 original size:24 final size:24
Alignment explanation
Indices: 47944276--47944351 Score: 107
Period size: 24 Copynumber: 3.2 Consensus size: 24
47944266 TAAACAGTAC
* *
47944276 AGTAACAGAAATCAGTGTAGTAAT
1 AGTAACAGTAATCAGTGCAGTAAT
*
47944300 AGTAATAGTAATCAGTGCAGTAAT
1 AGTAACAGTAATCAGTGCAGTAAT
* *
47944324 AGTAACGGTAATCAATGCAGTAAT
1 AGTAACAGTAATCAGTGCAGTAAT
47944348 AGTA
1 AGTA
47944352 TACAAGTCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.26
Consensus pattern (24 bp):
AGTAACAGTAATCAGTGCAGTAAT
Found at i:47944739 original size:27 final size:27
Alignment explanation
Indices: 47944665--47944878 Score: 232
Period size: 27 Copynumber: 8.0 Consensus size: 27
47944655 ATATATACAT
*
47944665 CACAT-AGGGCAAAACAGTCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
** * * *
47944691 CATGTAGGGGCAACATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * * *
47944718 TACATAAAGGTAAAACAATCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
47944745 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* **
47944772 AACATAAAAGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
47944799 CATATAAGGGCAAGACAGTCATATTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
47944826 CATATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
47944853 CACATAAGGGAAAAATAGTAATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
47944879 TCAATTAGCG
Statistics
Matches: 151, Mismatches: 36, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
26 3 0.02
27 148 0.98
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:47948496 original size:27 final size:27
Alignment explanation
Indices: 47948445--47948658 Score: 277
Period size: 27 Copynumber: 8.0 Consensus size: 27
47948435 ATAAATACAT
* *
47948445 CACAT-AGGGCAAAACAATCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
** * **
47948471 CATGTAAGGGCAAAATAGTCAACTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* ** *
47948498 CACATAAGGGAAAAACAAACATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
*
47948525 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
47948552 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
47948579 CATATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
47948606 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
47948633 CACATAAGGGCAAAATAGTCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
47948659 TCAATTAGGG
Statistics
Matches: 162, Mismatches: 25, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 3 0.02
27 159 0.98
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:47948654 original size:81 final size:81
Alignment explanation
Indices: 47948445--47948658 Score: 322
Period size: 81 Copynumber: 2.7 Consensus size: 81
47948435 ATAAATACAT
* * ** **
47948445 CACAT-AGGGCAAAACAATCATCTTACCATGTAAGGGCAAAATAGTCAACTTACCACATAAGGGA
1 CACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTACCACATAAGGGA
*
47948509 AAAACAAACATTTTAT
66 AAAACAAACATTTTAC
* * *
47948525 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTACCATATAAGGGC
1 CACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTACCACATAAGGGA
*
47948590 AAAACAATCATTTTAC
66 AAAACAAACATTTTAC
47948606 CACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTA
47948659 TCAATTAGGG
Statistics
Matches: 121, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 5 0.04
81 116 0.96
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (81 bp):
CACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTACCACATAAGGGA
AAAACAAACATTTTAC
Found at i:47953309 original size:15 final size:15
Alignment explanation
Indices: 47953289--47953323 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
47953279 GCCCTCTATT
47953289 TTTTTCTTCTTCTTC
1 TTTTTCTTCTTCTTC
47953304 TTTTTCTTCTTCTTC
1 TTTTTCTTCTTCTTC
47953319 TTTTT
1 TTTTT
47953324 TCCTTTTAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTCTTCTTCTTC
Found at i:47967383 original size:16 final size:16
Alignment explanation
Indices: 47967362--47967397 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
47967352 TTTATTTTTG
47967362 GATTGTTTAACAATTT
1 GATTGTTTAACAATTT
47967378 GATTGTTTAACAATTT
1 GATTGTTTAACAATTT
47967394 GATT
1 GATT
47967398 CTTTTGGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.31, C:0.06, G:0.14, T:0.50
Consensus pattern (16 bp):
GATTGTTTAACAATTT
Found at i:47974457 original size:21 final size:21
Alignment explanation
Indices: 47974431--47974473 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
47974421 AGGATATGCG
47974431 GTAAGTGACAAAGTATAGAAT
1 GTAAGTGACAAAGTATAGAAT
*
47974452 GTAAGTGACAAAGTATGGAAT
1 GTAAGTGACAAAGTATAGAAT
47974473 G
1 G
47974474 GGACAAGGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.05, G:0.28, T:0.23
Consensus pattern (21 bp):
GTAAGTGACAAAGTATAGAAT
Found at i:47995459 original size:26 final size:26
Alignment explanation
Indices: 47995390--47995463 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
47995380 TTTTGATCCA
*
47995390 AATTTTA-CTCTAATAAAATTTTGAC
1 AATTTTACCCCTAATAAAATTTTGAC
** *
47995415 AATTTTATCCCCTGTTAAAATTTTGAT
1 AATTTTA-CCCCTAATAAAATTTTGAC
*
47995442 GATTTTACCCCTAATAAAATTT
1 AATTTTACCCCTAATAAAATTT
47995464 GGAGAAAATT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
25 7 0.17
26 13 0.32
27 20 0.50
ACGTcount: A:0.35, C:0.15, G:0.05, T:0.45
Consensus pattern (26 bp):
AATTTTACCCCTAATAAAATTTTGAC
Found at i:48000665 original size:229 final size:230
Alignment explanation
Indices: 48000220--48000679 Score: 861
Period size: 229 Copynumber: 2.0 Consensus size: 230
48000210 TAGTGGAAGG
*
48000220 ACCGGTTGAACATATGTGATTAAGGTTGAAATAATTTATAATTAAGTTCTAGCTTTTCACCTGTT
1 ACCGGTTGAACATATGTGATTAAGGTTGAAATAATTTATAATTAAGTTCTAGCTTTTCACCTGAT
48000285 AATTATAAAATCATTTAGCCATGAAGTAATTCCACTATAGTATCGTGACTAAGTTCACCCTAATG
66 AATTATAAAATCATTTAGCCATGAAGTAATTCCACTATAGTATCGTGACTAAGTTCACCCTAATG
*
48000350 GCATACCATTACAAAAGCTACTCAGCTAGTGCTCGTGCAATGACATTGTCATAAGTATGTTACCC
131 GCATACCATTACAAAAGCTACTCAGCTAGTGCTAGTGCAATGACATTGTCATAAGTATGTTACCC
48000415 TCATAGGATATCCTCAATCTCTTTGGGATAATTTC
196 TCATAGGATATCCTCAATCTCTTTGGGATAATTTC
*
48000450 ACCGGTTGAACATATGTGATTAAGGTTTAAATAATTTATAATTAAGTTCTAGCTTTTCACCTGAT
1 ACCGGTTGAACATATGTGATTAAGGTTGAAATAATTTATAATTAAGTTCTAGCTTTTCACCTGAT
48000515 AATTATAAAATCATTTAGCCATGAAGTAATTCCACTATAG-ATCGTGACTAAGTTCACCCTAATG
66 AATTATAAAATCATTTAGCCATGAAGTAATTCCACTATAGTATCGTGACTAAGTTCACCCTAATG
*
48000579 GCATACCATTACAAAAGCTACTCAGCTAGTTCTAGT-CTAATGACATTGTCATAAGTATGTTACC
131 GCATACCATTACAAAAGCTACTCAGCTAGTGCTAGTGC-AATGACATTGTCATAAGTATGTTACC
48000643 CTCATAGGATATCCTCAATCTCTTTGGGATAATTTC
195 CTCATAGGATATCCTCAATCTCTTTGGGATAATTTC
48000679 A
1 A
48000680 TTCTCCTAAT
Statistics
Matches: 225, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
228 1 0.00
229 121 0.54
230 103 0.46
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (230 bp):
ACCGGTTGAACATATGTGATTAAGGTTGAAATAATTTATAATTAAGTTCTAGCTTTTCACCTGAT
AATTATAAAATCATTTAGCCATGAAGTAATTCCACTATAGTATCGTGACTAAGTTCACCCTAATG
GCATACCATTACAAAAGCTACTCAGCTAGTGCTAGTGCAATGACATTGTCATAAGTATGTTACCC
TCATAGGATATCCTCAATCTCTTTGGGATAATTTC
Found at i:48005881 original size:26 final size:26
Alignment explanation
Indices: 48005850--48005931 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
48005840 TGAAATGCCC
48005850 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
48005876 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
48005902 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
48005928 ATCA
1 ATCA
48005932 ATTTGTACCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:48016600 original size:27 final size:27
Alignment explanation
Indices: 48016562--48016623 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
48016552 CCAAGATCTT
** *
48016562 CATGTTTAGTGTCCTTACGGGCTATCC
1 CATGTTTAGTGTCCCAACGGACTATCC
*
48016589 CATGTTTAGTGTCCCAATGGACTATCC
1 CATGTTTAGTGTCCCAACGGACTATCC
48016616 CATGTTTA
1 CATGTTTA
48016624 ATATTTTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (27 bp):
CATGTTTAGTGTCCCAACGGACTATCC
Found at i:48016659 original size:27 final size:27
Alignment explanation
Indices: 48016608--48016659 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
48016598 TGTCCCAATG
*
48016608 GACTATCCCATGTTTAATATTTTGTTA
1 GACTATCCCATGTTTAATATCTTGTTA
* * *
48016635 GACTATCTCATGTTTGATGTCTTGT
1 GACTATCCCATGTTTAATATCTTGT
48016660 CAGTCTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.48
Consensus pattern (27 bp):
GACTATCCCATGTTTAATATCTTGTTA
Found at i:48016667 original size:27 final size:27
Alignment explanation
Indices: 48016608--48016667 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
48016598 TGTCCCAATG
* *
48016608 GACTATCCCATGTTTAATATTTTGTTA
1 GACTATCCCATGTTTAATATCTTGTCA
* * *
48016635 GACTATCTCATGTTTGATGTCTTGTCA
1 GACTATCCCATGTTTAATATCTTGTCA
*
48016662 GTCTAT
1 GACTAT
48016668 TTATGATGCC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.17, G:0.15, T:0.47
Consensus pattern (27 bp):
GACTATCCCATGTTTAATATCTTGTCA
Found at i:48019395 original size:47 final size:47
Alignment explanation
Indices: 48019317--48019771 Score: 757
Period size: 47 Copynumber: 9.6 Consensus size: 47
48019307 CCCTTCGGGA
* * * * * *
48019317 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48019364 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48019411 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTATGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48019458 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48019505 CTTATCACATATATTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATA-TACACTTTCACATTCATCACATCGGCCATTAGGC
*
48019553 CTAATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48019600 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48019649 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48019696 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48019743 CTTATCACATATATATACGCTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
48019772 TATTCAAATA
Statistics
Matches: 386, Mismatches: 17, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 275 0.71
48 46 0.12
49 65 0.17
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48019736 original size:238 final size:237
Alignment explanation
Indices: 48019320--48019771 Score: 780
Period size: 238 Copynumber: 1.9 Consensus size: 237
48019310 TTCGGGACTT
* * * * *
48019320 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTT
1 ATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTT
48019385 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
48019450 CATTATGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
131 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
48019515 ATAT-TACACTTTCACATTCATCACATCGGCCATTAGGCCTA
196 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTA
* * *
48019556 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
1 ATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATACACT
48019621 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
64 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
*
48019686 GCCATTAGGTCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
129 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48019751 ATATATATACGCTTTCACATT
194 ATATATATACACTTTCACATT
48019772 TATTCAAATA
Statistics
Matches: 202, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
236 44 0.22
238 145 0.72
239 13 0.06
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (237 bp):
ATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTA
Found at i:48024092 original size:40 final size:40
Alignment explanation
Indices: 48024052--48024239 Score: 205
Period size: 40 Copynumber: 4.7 Consensus size: 40
48024042 ACACGTCACC
* * * *
48024052 AGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACC
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* ** * * *
48024092 AGCACGAATGCTCTTCGGGGTTTAGCACAGATATATCACT
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* * ** * *
48024132 AGCACGAATGCTCTTCGGAACTTAGCCCAAATACATCACT
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* * *
48024172 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
48024212 AGCATGAATGCTCTTCGGGACTTAGCCC
1 AGCATGAATGCTCTTCGGGACTTAGCCC
48024240 AGATTTAGTA
Statistics
Matches: 127, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
AGCATGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
Found at i:48024268 original size:80 final size:79
Alignment explanation
Indices: 48024092--48024281 Score: 202
Period size: 80 Copynumber: 2.4 Consensus size: 79
48024082 ACATAACACC
* * * * *
48024092 AGCACGAATGCTCTTCGGGGTTTAGCACAGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 AGCACCAATGCTCTTC-GGGCTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
*
48024157 CCCAAATACATCACT
65 CCCAAATACATAACT
** * * *
48024172 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGGACTTAG
1 AGCACCAATGCTCTTCGGG-CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
* **
48024237 CCCAGATTTAGTAACT
65 CCCAAATACA-TAACT
* *
48024253 CGTACCAATGC-CTTCGGGCTTAGCCCGGA
1 AGCACCAATGCTCTTCGGGCTTAGCCCGGA
48024282 ATTAGTATCT
Statistics
Matches: 92, Mismatches: 16, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
79 14 0.15
80 67 0.73
81 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
AGCACCAATGCTCTTCGGGCTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGC
CCAAATACATAACT
Found at i:48024268 original size:120 final size:119
Alignment explanation
Indices: 48024047--48024278 Score: 277
Period size: 120 Copynumber: 1.9 Consensus size: 119
48024037 CGAATACACG
* * *
48024047 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACACAACACCAGCACGAATGCTCTTCGGGA
* * *
48024112 TTTAGCACAGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCAAATACA
66 CTTAGCACAGATATATAACTAGCACCAATGCTCTTCGG-ACTTAGCCCAAATACA
* * * * * * *
48024167 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGGA
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACACAACACCAGCACGAATGCTCTTCGGGA
* * * * *
48024232 CTTAGCCCAGATTTAGTAACTCGTACCAATGC-CTTCGGGCTTAGCCC
66 CTTAGCACAGATATA-TAACTAGCACCAATGCTCTTCGGACTTAGCCC
48024279 GGAATTAGTA
Statistics
Matches: 93, Mismatches: 18, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
119 8 0.09
120 73 0.78
121 12 0.13
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (119 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACACAACACCAGCACGAATGCTCTTCGGGA
CTTAGCACAGATATATAACTAGCACCAATGCTCTTCGGACTTAGCCCAAATACA
Found at i:48024287 original size:39 final size:40
Alignment explanation
Indices: 48024218--48024308 Score: 121
Period size: 39 Copynumber: 2.3 Consensus size: 40
48024208 CGCTAGCATG
* * *
48024218 AATGCTCTTCGGGACTTAGCCCAGATTTAGTAACTCGTACC
1 AATGC-CTTCGGGACTTAGCCCAGAATTAGTAACTCGCACA
* *
48024259 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACA
48024298 AATGCCTTCGG
1 AATGCCTTCGG
48024309 ATCTTAGTTC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
39 33 0.73
40 7 0.16
41 5 0.11
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACA
Found at i:48024708 original size:29 final size:29
Alignment explanation
Indices: 48024674--48024744 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
48024664 TCAACCACGT
* *
48024674 ACACTTAGTGCCATGTACTTT-AAACTCGC
1 ACACTTAGTGCCATGCA-TTTCAAACCCGC
*
48024703 ACACTTAGTGCCATGCATTTCAAGCCCGC
1 ACACTTAGTGCCATGCATTTCAAACCCGC
48024732 ACACTTAGTGCCA
1 ACACTTAGTGCCA
48024745 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
ACACTTAGTGCCATGCATTTCAAACCCGC
Found at i:48024787 original size:43 final size:43
Alignment explanation
Indices: 48024726--48024871 Score: 292
Period size: 43 Copynumber: 3.4 Consensus size: 43
48024716 TGCATTTCAA
48024726 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
48024769 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
48024812 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
48024855 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
48024872 TGAAAACCAA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:48026372 original size:47 final size:47
Alignment explanation
Indices: 48026294--48026748 Score: 768
Period size: 47 Copynumber: 9.6 Consensus size: 47
48026284 CCCTTTGGGA
* * * * * *
48026294 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48026341 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48026388 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48026435 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48026482 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48026531 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48026578 CTTATCACATATATATACACTTTCACATTCATCACATC-GCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48026626 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48026673 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48026720 CTTATCACATATATATACGCTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
48026749 TATTCAAATA
Statistics
Matches: 390, Mismatches: 11, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
46 28 0.07
47 251 0.64
48 18 0.05
49 93 0.24
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48026523 original size:96 final size:96
Alignment explanation
Indices: 48026294--48026748 Score: 771
Period size: 96 Copynumber: 4.8 Consensus size: 96
48026284 CCCTTTGGGA
* * * * * * *
48026294 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
48026357 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
48026388 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
48026451 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
48026482 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
48026547 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
48026578 CTTATCACATATATATACACTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
48026642 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
48026673 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
48026736 ACGCTTTCACATT
64 ACACTTTCACATT
48026749 TATTCAAATA
Statistics
Matches: 346, Mismatches: 8, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
93 29 0.08
94 110 0.32
95 65 0.19
96 142 0.41
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48026711 original size:238 final size:237
Alignment explanation
Indices: 48026294--48026748 Score: 804
Period size: 238 Copynumber: 1.9 Consensus size: 237
48026284 CCCTTTGGGA
* * * * *
48026294 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
48026359 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
48026424 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
48026489 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
48026531 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
48026596 ACTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
48026660 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
48026725 CACATATATATACGCTTTCACATT
194 CACATATATATACACTTTCACATT
48026749 TATTCAAATA
Statistics
Matches: 207, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
237 47 0.23
238 132 0.64
239 28 0.14
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (237 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48030093 original size:21 final size:21
Alignment explanation
Indices: 48030068--48030171 Score: 87
Period size: 20 Copynumber: 5.2 Consensus size: 21
48030058 TAGCCTTCAG
48030068 GCTTCCGTTTAGCACTTGTGT
1 GCTTCCGTTTAGCACTTGTGT
* **
48030089 GCTTCAG-TTAGC-CTTCAG-
1 GCTTCCGTTTAGCACTTGTGT
*
48030107 GCTTCCGTTTAACACTTGTGT
1 GCTTCCGTTTAGCACTTGTGT
*
48030128 GCTTCAG-TTAGC-CTTCG-G-
1 GCTTCCGTTTAGCACTT-GTGT
* *
48030146 GCTTCCATTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTGTGT
48030167 GCTTC
1 GCTTC
48030172 AGCTAGACTT
Statistics
Matches: 63, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
18 11 0.17
19 17 0.27
20 18 0.29
21 17 0.27
ACGTcount: A:0.13, C:0.26, G:0.21, T:0.39
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTGTGT
Found at i:48030096 original size:39 final size:39
Alignment explanation
Indices: 48030050--48030189 Score: 226
Period size: 39 Copynumber: 3.6 Consensus size: 39
48030040 GCTCTGATGA
48030050 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTGTGT
*
48030089 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAACACTTGTGT
1 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTGTGT
* * *
48030128 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTGTGT
* *
48030167 GCTTCAGCTAGACTTCAGGCTTC
1 GCTTCAGTTAGCCTTCAGGCTTC
48030190 AAATCACGAT
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 93 1.00
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTGTGT
Found at i:48030881 original size:3 final size:3
Alignment explanation
Indices: 48030873--48030923 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
48030863 TGAGTTTTTA
*
48030873 AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AA- AA- AAT AAAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
48030916 AA- AAT AAT
1 AAT AAT AAT
48030924 TATATTACGA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 8 0.19
3 32 0.74
4 3 0.07
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:48036619 original size:40 final size:40
Alignment explanation
Indices: 48036563--48036846 Score: 444
Period size: 40 Copynumber: 7.1 Consensus size: 40
48036553 CGGATGATAA
* *
48036563 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
48036603 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
48036643 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
48036683 CCGGGCTAAGTACCGAAGGCATTTTTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48036723 CCGGGCTAAGTCCCGAAGGCATTTGTGCGCGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
48036763 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
48036803 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
48036843 CCGG
1 CCGG
48036847 TTAAAGCCCG
Statistics
Matches: 224, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 223 1.00
41 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48042165 original size:18 final size:18
Alignment explanation
Indices: 48042142--48042178 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
48042132 TTAGAGAGAC
48042142 AAGGTAAGTACTTCAAGA
1 AAGGTAAGTACTTCAAGA
48042160 AAGGTAAGTACTTCAAGA
1 AAGGTAAGTACTTCAAGA
48042178 A
1 A
48042179 CTTTACTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.22
Consensus pattern (18 bp):
AAGGTAAGTACTTCAAGA
Found at i:48043067 original size:20 final size:19
Alignment explanation
Indices: 48043042--48043085 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
48043032 AACGATACCG
*
48043042 ATACTAGGATAAAGGTATCA
1 ATACTAGAATAAAGGTAT-A
*
48043062 ATACTATAATAAAGGTATA
1 ATACTAGAATAAAGGTATA
48043081 ATACT
1 ATACT
48043086 TTAATAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.48, C:0.09, G:0.14, T:0.30
Consensus pattern (19 bp):
ATACTAGAATAAAGGTATA
Found at i:48043093 original size:39 final size:40
Alignment explanation
Indices: 48043050--48043128 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 40
48043040 CGATACTAGG
* * * *
48043050 ATAAAGGTATCAATACTATAATAAAGGTAT-AATACTTTA
1 ATAAAAGTATCAAAACTATAAGAAAAGTATCAATACTTTA
* *
48043089 ATAAAAGTATCAAAACTTTGAGAAAAGTATCAATACTTTA
1 ATAAAAGTATCAAAACTATAAGAAAAGTATCAATACTTTA
48043129 CTTTAAGGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
39 24 0.73
40 9 0.27
ACGTcount: A:0.49, C:0.09, G:0.10, T:0.32
Consensus pattern (40 bp):
ATAAAAGTATCAAAACTATAAGAAAAGTATCAATACTTTA
Found at i:48043095 original size:20 final size:20
Alignment explanation
Indices: 48043050--48043128 Score: 97
Period size: 20 Copynumber: 4.0 Consensus size: 20
48043040 CGATACTAGG
* *
48043050 ATAAAGGTATCAATACTATA
1 ATAAAAGTATCAATACTTTA
*
48043070 ATAAAGGTAT-AATACTTTA
1 ATAAAAGTATCAATACTTTA
* *
48043089 ATAAAAGTATCAAAACTTTG
1 ATAAAAGTATCAATACTTTA
*
48043109 AGAAAAGTATCAATACTTTA
1 ATAAAAGTATCAATACTTTA
48043129 CTTTAAGGAA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
19 17 0.33
20 34 0.67
ACGTcount: A:0.49, C:0.09, G:0.10, T:0.32
Consensus pattern (20 bp):
ATAAAAGTATCAATACTTTA
Found at i:48055299 original size:9 final size:9
Alignment explanation
Indices: 48055287--48055316 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
48055277 TTTTATATTA
48055287 TTTATGAGT
1 TTTATGAGT
48055296 TTTATGAGT
1 TTTATGAGT
*
48055305 TTTATGAAT
1 TTTATGAGT
48055314 TTT
1 TTT
48055317 TATAAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (9 bp):
TTTATGAGT
Found at i:48055330 original size:10 final size:10
Alignment explanation
Indices: 48055304--48055338 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
48055294 GTTTTATGAG
* *
48055304 TTTTATGAAT
1 TTTTATAAAA
48055314 TTTTATAAAA
1 TTTTATAAAA
48055324 TTTTATAAAA
1 TTTTATAAAA
48055334 TTTTA
1 TTTTA
48055339 AATACGTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (10 bp):
TTTTATAAAA
Found at i:48055369 original size:10 final size:10
Alignment explanation
Indices: 48055354--48055400 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
48055344 GTTTTATTAA
48055354 TTTTATAATT
1 TTTTATAATT
48055364 TTTTATAATT
1 TTTTATAATT
* *
48055374 TATTA-GATCT
1 TTTTATAAT-T
48055384 TTTTAT-ATT
1 TTTTATAATT
48055393 TTTTATAA
1 TTTTATAA
48055401 GGTTGTATGA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
9 9 0.29
10 22 0.71
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (10 bp):
TTTTATAATT
Found at i:48055476 original size:10 final size:10
Alignment explanation
Indices: 48055440--48055486 Score: 52
Period size: 10 Copynumber: 5.3 Consensus size: 10
48055430 TTTATATCAA
48055440 TTTTAATA-T
1 TTTTAATATT
48055449 TTTT-AT-TT
1 TTTTAATATT
48055457 TTTT-A-A-T
1 TTTTAATATT
48055464 TTTTAATATT
1 TTTTAATATT
48055474 TTTTAATATT
1 TTTTAATATT
48055484 TTT
1 TTT
48055487 ATGATAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
7 5 0.15
8 9 0.27
9 5 0.15
10 14 0.42
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTTAATATT
Found at i:48055485 original size:9 final size:9
Alignment explanation
Indices: 48055440--48055487 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
48055430 TTTATATCAA
48055440 TTTTAATAT
1 TTTTAATAT
48055449 TTTT-AT-T
1 TTTTAATAT
*
48055456 TTTTTA-AT
1 TTTTAATAT
48055464 TTTTAATATT
1 TTTTAATA-T
48055474 TTTTAATAT
1 TTTTAATAT
48055483 TTTTA
1 TTTTA
48055488 TGATAAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
7 5 0.15
8 9 0.26
9 11 0.32
10 9 0.26
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTTAATAT
Found at i:48056056 original size:31 final size:31
Alignment explanation
Indices: 48056019--48056087 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 31
48056009 TAGATGATAC
48056019 ACTATTAC-AAAA-TATAATA-ATATTATATGTA
1 ACTATTACTAAAACTATAATACATA-TATA--TA
*
48056050 ACTATTACTAAAACTTTAATACATATATATA
1 ACTATTACTAAAACTATAATACATATATATA
48056081 ACTATTA
1 ACTATTA
48056088 TTATATTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
31 17 0.50
32 4 0.12
33 10 0.29
34 3 0.09
ACGTcount: A:0.49, C:0.10, G:0.01, T:0.39
Consensus pattern (31 bp):
ACTATTACTAAAACTATAATACATATATATA
Found at i:48061832 original size:19 final size:20
Alignment explanation
Indices: 48061798--48061837 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
48061788 TTATGTTATC
48061798 ATTTTATAAAAAT-AAATTA
1 ATTTTATAAAAATAAAATTA
**
48061817 ATTTTATAAATTTAAAATTA
1 ATTTTATAAAAATAAAATTA
48061837 A
1 A
48061838 AATATTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTTTATAAAAATAAAATTA
Found at i:48064276 original size:26 final size:26
Alignment explanation
Indices: 48064247--48064298 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
48064237 AATATTGACA
*
48064247 TAAACAATATTTATCTTAATGATAAT
1 TAAACAATATTTATATTAATGATAAT
* *
48064273 TAAATAATATTTATATTGATGATAAT
1 TAAACAATATTTATATTAATGATAAT
48064299 ATTATTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (26 bp):
TAAACAATATTTATATTAATGATAAT
Found at i:48064379 original size:20 final size:20
Alignment explanation
Indices: 48064346--48064413 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
48064336 TTCTCATCTA
*
48064346 AAAAGTTTAGGTAAAATTTTC
1 AAAA-TTTACGTAAAATTTTC
*
48064367 AAAATTTACGT-AACTCTTTC
1 AAAATTTACGTAAAAT-TTTC
* * *
48064387 AAAGTTTACCTAAAAATTT-
1 AAAATTTACGTAAAATTTTC
48064406 AAAATTTA
1 AAAATTTA
48064414 TTTATTTAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
19 10 0.26
20 22 0.58
21 6 0.16
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.38
Consensus pattern (20 bp):
AAAATTTACGTAAAATTTTC
Found at i:48068812 original size:2 final size:2
Alignment explanation
Indices: 48068805--48068836 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
48068795 ACTTGGAGGG
48068805 GA GA GA GA GA GA GA GA GA GA GA GA GA GA -A GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
48068837 TGTTTTTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:48069437 original size:24 final size:24
Alignment explanation
Indices: 48069402--48069464 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
48069392 TATTTTCTTA
*
48069402 TTTTA-GTTATTTATTCATTTGTT
1 TTTTATGTTATTTATTCATTTATT
*
48069425 TTTTATGTTATTTATTCGTTTATT
1 TTTTATGTTATTTATTCATTTATT
* * *
48069449 GTTCATATTATTTATT
1 TTTTATGTTATTTATT
48069465 TATTACTCCT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 5 0.15
24 29 0.85
ACGTcount: A:0.19, C:0.05, G:0.08, T:0.68
Consensus pattern (24 bp):
TTTTATGTTATTTATTCATTTATT
Found at i:48069779 original size:3 final size:3
Alignment explanation
Indices: 48069773--48069804 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
48069763 AGATTTCATC
*
48069773 ATT ATT ATT ATT ATT ATT ATT ATT ATG ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
48069805 ACTTTCTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:48070074 original size:16 final size:16
Alignment explanation
Indices: 48070053--48070085 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
48070043 TTAATATCTT
*
48070053 TTTATTTATTTATTTG
1 TTTATTTATTCATTTG
48070069 TTTATTTATTCATTTG
1 TTTATTTATTCATTTG
48070085 T
1 T
48070086 CCTATTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.06, T:0.73
Consensus pattern (16 bp):
TTTATTTATTCATTTG
Found at i:48070165 original size:16 final size:15
Alignment explanation
Indices: 48070139--48070168 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
48070129 ATTGTTATTG
48070139 TTATTATTTATTTTA
1 TTATTATTTATTTTA
48070154 TTATTCATTTATTTT
1 TTATT-ATTTATTTT
48070169 TCTCTAATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (15 bp):
TTATTATTTATTTTA
Found at i:48073570 original size:18 final size:18
Alignment explanation
Indices: 48073547--48073581 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
48073537 ATAATCTTTA
*
48073547 AAAGTAAAAATTAAAAAT
1 AAAGTAAAAATGAAAAAT
48073565 AAAGTAAAAATGAAAAA
1 AAAGTAAAAATGAAAAA
48073582 AATGTGAACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (18 bp):
AAAGTAAAAATGAAAAAT
Found at i:48073792 original size:31 final size:29
Alignment explanation
Indices: 48073755--48073813 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 29
48073745 CAAAAGGACT
*
48073755 TAATTAATATAACCTCAACAATTTAAAAATA
1 TAATTAAAATAACCT-AA-AATTTAAAAATA
**
48073786 TAATTAAAATAATGTAAAATTTAAAAAT
1 TAATTAAAATAACCTAAAATTTAAAAAT
48073814 CAATTTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 11 0.44
30 2 0.08
31 12 0.48
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.34
Consensus pattern (29 bp):
TAATTAAAATAACCTAAAATTTAAAAATA
Found at i:48077235 original size:40 final size:40
Alignment explanation
Indices: 48077191--48077269 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
48077181 TTACAGTACC
**
48077191 ACTTGATGTGTAGGGCTGGATGGGTCGATTTTATCCCCAT
1 ACTTGATGTGTAGGGCTGGATGGGTCGAACTTATCCCCAT
* *
48077231 ACTTGGTGTGTAGGGCTGGGTGGGTCGAACTTATCCCCA
1 ACTTGATGTGTAGGGCTGGATGGGTCGAACTTATCCCCA
48077270 CATGGTGTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.16, C:0.19, G:0.33, T:0.32
Consensus pattern (40 bp):
ACTTGATGTGTAGGGCTGGATGGGTCGAACTTATCCCCAT
Found at i:48083380 original size:24 final size:24
Alignment explanation
Indices: 48083347--48083444 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
48083337 AAGGCTATCA
48083347 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
48083371 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
48083395 GGAGAGGATTTAGGAGTTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
48083419 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
48083444 G
1 G
48083445 AGCAGGAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 64 0.96
25 3 0.04
ACGTcount: A:0.36, C:0.04, G:0.39, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:48085141 original size:33 final size:34
Alignment explanation
Indices: 48085064--48085144 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 34
48085054 TATGGGCCGT
*
48085064 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
48085098 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
48085131 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
48085145 GGGCTTAGGC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 13 0.34
33 14 0.37
34 11 0.29
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:48085149 original size:32 final size:31
Alignment explanation
Indices: 48085064--48085156 Score: 78
Period size: 32 Copynumber: 2.8 Consensus size: 31
48085054 TATGGGCCGT
*
48085064 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAAT---GGGCTAAGGCCCAGTTC
* * * **
48085098 AATGTAATCTGAAAAGGGCTCTGGCCCAGTATC
1 ACTGTTATCTG-AATGGGCTAAGGCCCAGT-TC
*
48085131 ACTGTTATCTGAATGGGCTTAGGCCC
1 ACTGTTATCTGAATGGGCTAAGGCCC
48085157 GATGGGCTTG
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
32 25 0.54
33 10 0.22
34 9 0.20
35 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (31 bp):
ACTGTTATCTGAATGGGCTAAGGCCCAGTTC
Found at i:48090691 original size:51 final size:51
Alignment explanation
Indices: 48090636--48090735 Score: 119
Period size: 51 Copynumber: 2.0 Consensus size: 51
48090626 CTACCTTATA
* * * *
48090636 ACATGTAACACATCCATAATGAACTCGGCCCTCTCAATGAGCTCGAATGTT
1 ACATGTAACACATCCATAATGAACTCGGACCACTCAACGAGCTCAAATGTT
* * * * *
48090687 ACATGTATCGCATCCATTATGACCTTGGACCACTCAACGAGCTCAAATG
1 ACATGTAACACATCCATAATGAACTCGGACCACTCAACGAGCTCAAATG
48090736 CTCGCATCCA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (51 bp):
ACATGTAACACATCCATAATGAACTCGGACCACTCAACGAGCTCAAATGTT
Found at i:48090833 original size:43 final size:43
Alignment explanation
Indices: 48090780--48090863 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
48090770 GCTCAGATAG
* *
48090780 CACATATATCACGAACTTGGACCACTCAACAAGTTCGGATTCT
1 CACATATATCACGAACTCGGACCACTCAACAAGCTCGGATTCT
48090823 CACATATATCACGAACTCGGACCACTCAACAAGCTCGGATT
1 CACATATATCACGAACTCGGACCACTCAACAAGCTCGGATT
48090864 TCTTAATTCC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (43 bp):
CACATATATCACGAACTCGGACCACTCAACAAGCTCGGATTCT
Found at i:48104361 original size:42 final size:43
Alignment explanation
Indices: 48104262--48104373 Score: 115
Period size: 43 Copynumber: 2.6 Consensus size: 43
48104252 GCTCGTACAT
* * ** * *
48104262 TGCCAATGTCCCAAACATAGTCTTACATGTAATCAACTATTGA
1 TGCCAACGTCCCAGACAGGGTCTTACATGAAATCAACTATCGA
48104305 TGCC-ACTGTCCCAGACAGGGTCTTACATGAAATC-A-TATACGA
1 TGCCAAC-GTCCCAGACAGGGTCTTACATGAAATCAACTAT-CGA
48104347 TGCCAACGTCCCAGAC-GTGGTCTTACA
1 TGCCAACGTCCCAGACAG-GGTCTTACA
48104374 CAATAACACA
Statistics
Matches: 59, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
41 4 0.07
42 26 0.44
43 29 0.49
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
TGCCAACGTCCCAGACAGGGTCTTACATGAAATCAACTATCGA
Found at i:48107471 original size:57 final size:57
Alignment explanation
Indices: 48107405--48107521 Score: 175
Period size: 57 Copynumber: 2.1 Consensus size: 57
48107395 TTTCTTTTTT
* *
48107405 TTTTCATTTTCATTTTGGAGAAAACCATATTTATTTACAAATGA-TTCC-ATTTCTCCA
1 TTTTCATTTTCATTTTGAAGAAAACCATAGTTATTTACAAAT-ATTTCCTA-TTCTCCA
*
48107462 TTTTCATTTTCATTTTGAAGAAAACCATAGTTATTTCCAAATATTTCCTATTCTCCA
1 TTTTCATTTTCATTTTGAAGAAAACCATAGTTATTTACAAATATTTCCTATTCTCCA
48107519 TTT
1 TTT
48107522 CACTATTTCC
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
56 1 0.02
57 53 0.96
58 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (57 bp):
TTTTCATTTTCATTTTGAAGAAAACCATAGTTATTTACAAATATTTCCTATTCTCCA
Found at i:48110557 original size:17 final size:20
Alignment explanation
Indices: 48110525--48110563 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
48110515 ATGTGGCTGA
48110525 ATATACTTCACAATTA-CAT
1 ATATACTTCACAATTAGCAT
48110544 ATATA-TTCAC-ATTAGCAT
1 ATATACTTCACAATTAGCAT
48110562 AT
1 AT
48110564 TGTATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 10 0.53
19 5 0.26
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.38
Consensus pattern (20 bp):
ATATACTTCACAATTAGCAT
Found at i:48110808 original size:43 final size:43
Alignment explanation
Indices: 48110737--48110891 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 43
48110727 ATATCATATA
* * *
48110737 ATGCCAATGTCCCAGA-TGTGGTCGTACATGCAATAACATATCG
1 ATGCCACTGTCCCAGACAGTGGTCTTACATG-AATAACATATCG
48110780 ATGCCACTGTCCCAGACAG-GGTCTTACATGAATCAA-ATA-CG
1 ATGCCACTGTCCCAGACAGTGGTCTTACATGAAT-AACATATCG
* * * *
48110821 ATGCTGA-TGTCCTAAACA-TGGTCTTACATGTAATCACATATCG
1 ATGC-CACTGTCCCAGACAGTGGTCTTACATG-AATAACATATCG
*
48110864 ATGCCAAC-ATCCCAGAC-GTGGTCTTACA
1 ATGCC-ACTGTCCCAGACAGTGGTCTTACA
48110892 CAAGAACACA
Statistics
Matches: 91, Mismatches: 11, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
41 27 0.30
42 13 0.14
43 50 0.55
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACAGTGGTCTTACATGAATAACATATCG
Found at i:48112377 original size:46 final size:44
Alignment explanation
Indices: 48112310--48112434 Score: 171
Period size: 46 Copynumber: 2.8 Consensus size: 44
48112300 GGTGGTACGT
*
48112310 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGGCACATT-ATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCA-G--CATTGACGA
48112356 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATT--GACGA
* *
48112402 GAGCTAGTGTAAGACATGTCTAGGACATGCATC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC
48112435 GGCTTCGAGA
Statistics
Matches: 73, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 68 0.93
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTGACGA
Found at i:48112606 original size:49 final size:48
Alignment explanation
Indices: 48112501--48112611 Score: 141
Period size: 48 Copynumber: 2.3 Consensus size: 48
48112491 TGTGTGTCAG
** * * ** *
48112501 TGTAAGACCTGTCTGGGACATGGCATCGACACCATAGATGAAATTCAT
1 TGTAAGACCTGTCTCAGACATGACATCAACACCATAGATGAAAGCCAC
*
48112549 TGTAAGACCTGTCTCAGACATGACATCAACACCGATAGATGAGAGCCAC
1 TGTAAGACCTGTCTCAGACATGACATCAACACC-ATAGATGAAAGCCAC
48112598 TGTAAGACCTGTCT
1 TGTAAGACCTGTCT
48112612 GGGATATGGC
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
48 29 0.54
49 25 0.46
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (48 bp):
TGTAAGACCTGTCTCAGACATGACATCAACACCATAGATGAAAGCCAC
Found at i:48116381 original size:46 final size:47
Alignment explanation
Indices: 48116328--48116448 Score: 140
Period size: 46 Copynumber: 2.6 Consensus size: 47
48116318 TGTGAGCCAA
* *
48116328 TGTAAGACATGTCTGGGACATGCATCGGCAT-TGA-G-ACAAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGACATCGGATGTACAAG-G-TAG
* *
48116374 TGTAAGACATGTCTGGGACATGCGTCGACCTCGGGATGTACAAGGTAG
1 TGTAAGACATGTCTGGGACATGCATCGACATC-GGATGTACAAGGTAG
*
48116422 TGTAAGACCTGTCTGGGACATGGCATC
1 TGTAAGACATGTCTGGGACAT-GCATC
48116449 AGCTTGTTGT
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
46 28 0.44
48 25 0.39
49 6 0.09
50 5 0.08
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.23
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGCATCGACATCGGATGTACAAGGTAG
Found at i:48116532 original size:48 final size:49
Alignment explanation
Indices: 48116461--48116631 Score: 220
Period size: 49 Copynumber: 3.5 Consensus size: 49
48116451 CTTGTTGTGT
*
48116461 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACC-ATAAATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCAACACCGATAAATGAAA
* * * *
48116509 GTCAGTGTAAGACCTGCCTGGGACATGACATCAACACCGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCAACACCGATAAATGAAA
* * * * *
48116558 GCCAGTGTAAGACCTGTCTGGGATATTGCATCAAC-CTCGATATATGTAA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCAACAC-CGATAAATGAAA
*
48116607 GTTAGTGTAAGACCTGTCTGGGACA
1 GTCAGTGTAAGACCTGTCTGGGACA
48116632 CGCATTGACT
Statistics
Matches: 105, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
48 36 0.34
49 69 0.66
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCAACACCGATAAATGAAA
Found at i:48122206 original size:13 final size:13
Alignment explanation
Indices: 48122188--48122212 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48122178 TTTTAGGTTG
48122188 AATAAGATGATAA
1 AATAAGATGATAA
48122201 AATAAGATGATA
1 AATAAGATGATA
48122213 TTTTCTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (13 bp):
AATAAGATGATAA
Found at i:48125885 original size:42 final size:43
Alignment explanation
Indices: 48125831--48125933 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
48125821 GGTTTACGTA
** * *
48125831 TAAGACCATGTCTGGGACATCGCCATCG-TATCTG-ATTTCGTG
1 TAAGACCATGTCTGGGACAGAGCCATCGATAT-TGAATTACATG
* * *
48125873 TAAGACCCTGTCTGGGATAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCTGGGACAGAGCCATCGATATTGAATTACATG
48125916 TAAGACCATGTCTGGGAC
1 TAAGACCATGTCTGGGAC
48125934 GTCGACATTG
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
42 25 0.50
43 25 0.50
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAGAGCCATCGATATTGAATTACATG
Found at i:48130416 original size:40 final size:40
Alignment explanation
Indices: 48130372--48130599 Score: 343
Period size: 40 Copynumber: 5.7 Consensus size: 40
48130362 GCTACTTGCT
* *
48130372 CAAATGCCTTCGGGGCTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
*
48130412 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
48130452 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
48130492 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* * * *
48130532 CAAATGCCTTCGGG-CTTAGCCCAG-AATTAGTCACTAACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCACA
*
48130571 CAAGTGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
48130600 CATCCGAATA
Statistics
Matches: 171, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 31 0.18
40 138 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:48135035 original size:27 final size:30
Alignment explanation
Indices: 48135004--48135068 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 30
48134994 TGAATTTTGA
48135004 TGAAATTGAACT-ATTT-GGGA-TAAATTG
1 TGAAATTGAACTGATTTGGGGACTAAATTG
* *
48135031 TGAAAAT-AA-TGTTTTGGGGACTAAATTG
1 TGAAATTGAACTGATTTGGGGACTAAATTG
48135059 TG-AATTGAAC
1 TGAAATTGAAC
48135069 ATGTTGTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
25 1 0.03
26 5 0.17
27 13 0.43
28 11 0.37
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.35
Consensus pattern (30 bp):
TGAAATTGAACTGATTTGGGGACTAAATTG
Found at i:48135686 original size:43 final size:42
Alignment explanation
Indices: 48135584--48135686 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 42
48135574 GGTTTACTTA
** * * *
48135584 TAAGACCATGTCTGGGACATCGGTATCGTATCTGATTTCGTG
1 TAAGACCATGTCTGGGACAGAGGCATCGTATCTGATTACATG
* *
48135626 TAAGACCCTGTTTGGGACAGAGGCATCGATAT-TGAATTACATG
1 TAAGACCATGTCTGGGACAGAGGCATCG-TATCTG-ATTACATG
*
48135669 TAAGACCATGTCCGGGAC
1 TAAGACCATGTCTGGGAC
48135687 GTCGACATTG
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 25 0.51
43 24 0.49
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACAGAGGCATCGTATCTGATTACATG
Found at i:48144400 original size:26 final size:25
Alignment explanation
Indices: 48144370--48144418 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
48144360 GATAGTAAAA
* *
48144370 ATATAATTTTGGTATTTTTTAATATG
1 ATAT-ATTTTGATAATTTTTAATATG
*
48144396 ATATATTTTTATAATTTTTAATA
1 ATATATTTTGATAATTTTTAATA
48144419 GATTGAATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (25 bp):
ATATATTTTGATAATTTTTAATATG
Found at i:48144488 original size:31 final size:31
Alignment explanation
Indices: 48144452--48144515 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
48144442 TTAAAAAAAG
*
48144452 ATAAAATATAATTTACTGTTATTAATTTAAA
1 ATAAAATATAATTTACTGATATTAATTTAAA
48144483 ATAAAATATAATTTACTGATATTAATTTAAA
1 ATAAAATATAATTTACTGATATTAATTTAAA
48144514 AT
1 AT
48144516 GGTCATTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (31 bp):
ATAAAATATAATTTACTGATATTAATTTAAA
Found at i:48145007 original size:20 final size:19
Alignment explanation
Indices: 48144942--48145012 Score: 103
Period size: 19 Copynumber: 3.8 Consensus size: 19
48144932 AGTTTAGGGT
48144942 ATTAGGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
48144961 ATTAGGG---ATTGATTAA
1 ATTAGGGTTAATTGATTAA
*
48144977 ATTAAGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
48144996 ATTTAGGGTTAATTGAT
1 A-TTAGGGTTAATTGAT
48145013 ACATAATCAT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
16 15 0.33
19 17 0.37
20 14 0.30
ACGTcount: A:0.37, C:0.00, G:0.21, T:0.42
Consensus pattern (19 bp):
ATTAGGGTTAATTGATTAA
Found at i:48145774 original size:126 final size:126
Alignment explanation
Indices: 48145546--48145926 Score: 627
Period size: 126 Copynumber: 3.0 Consensus size: 126
48145536 TTTCTGCAAG
* * *
48145546 AATAATTTTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATTCATTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
* * * *
48145611 AGCAAAATTTCTGAAAAAAGCTTCCACGTGGATGCTCTTTTGTTACAGTAGTTCATAGAAA
66 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * * * *
48145672 AATAATTCTAAGTAGATGTTTCTGAATAAATAGTGTCGAAAACGTTTCAAGCAAGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
48145737 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* *
48145798 AATAATTCTGAGTAGACGTTTTTGAACAAATAGTGTCGAAAACACTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
*
48145863 AGTAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
48145924 AAT
1 AAT
48145927 GAGGCTATAA
Statistics
Matches: 235, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 235 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (126 bp):
AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:48152920 original size:40 final size:40
Alignment explanation
Indices: 48152864--48153079 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 40
48152854 GGATGATAAT
* * * *
48152864 CGGGCAAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATC
*
48152904 CGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
48152944 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
48152984 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * *
48153024 CGGGCTATGTCCCGAAGGCA-TTGAGCAAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* *
48153063 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
48153080 TACTTGCCTT
Statistics
Matches: 158, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
38 15 0.09
39 15 0.09
40 128 0.81
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:48161148 original size:40 final size:40
Alignment explanation
Indices: 48160925--48161181 Score: 281
Period size: 40 Copynumber: 6.5 Consensus size: 40
48160915 CAGATGATAA
** * *
48160925 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
** * * *
48160965 CCAAGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* **
48161005 TCGGGCTAAGTCCCGAATACATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48161045 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48161085 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
48161125 CCGGGCTATGTCCCGAAGGCA-TTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
48161164 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
48161182 TACTTGGCTT
Statistics
Matches: 191, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
38 15 0.08
39 15 0.08
40 161 0.84
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48163036 original size:12 final size:13
Alignment explanation
Indices: 48163012--48163040 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
48163002 GGGCCATAAC
48163012 TATTGCATTTATT
1 TATTGCATTTATT
48163025 TATTGC-TTTATT
1 TATTGCATTTATT
48163037 TATT
1 TATT
48163041 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:48170016 original size:7 final size:7
Alignment explanation
Indices: 48170004--48170049 Score: 92
Period size: 7 Copynumber: 6.6 Consensus size: 7
48169994 TATTACTTAT
48170004 ATACATA
1 ATACATA
48170011 ATACATA
1 ATACATA
48170018 ATACATA
1 ATACATA
48170025 ATACATA
1 ATACATA
48170032 ATACATA
1 ATACATA
48170039 ATACATA
1 ATACATA
48170046 ATAC
1 ATAC
48170050 TAAATGGTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (7 bp):
ATACATA
Found at i:48170067 original size:7 final size:7
Alignment explanation
Indices: 48170045--48170087 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
48170035 CATAATACAT
48170045 AATACTA
1 AATACTA
**
48170052 AATGGTA
1 AATACTA
48170059 AATACTA
1 AATACTA
48170066 AATACTA
1 AATACTA
*
48170073 AATACAA
1 AATACTA
48170080 AATGACTA
1 AAT-ACTA
48170088 TTTTATTATG
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
7 26 0.90
8 3 0.10
ACGTcount: A:0.56, C:0.12, G:0.07, T:0.26
Consensus pattern (7 bp):
AATACTA
Found at i:48170082 original size:21 final size:21
Alignment explanation
Indices: 48170010--48170082 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
48170000 TTATATACAT
*
48170010 AATACATAATACATAATAC-A
1 AATACAAAATACATAATACTA
*
48170030 TAATACATAATACATAATACTA
1 -AATACAAAATACATAATACTA
***
48170052 AATGGTAAATAC-TAAATACTA
1 AATACAAAATACAT-AATACTA
48170073 AATACAAAAT
1 AATACAAAAT
48170083 GACTATTTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.02
21 41 0.95
22 1 0.02
ACGTcount: A:0.58, C:0.12, G:0.03, T:0.27
Consensus pattern (21 bp):
AATACAAAATACATAATACTA
Found at i:48171188 original size:47 final size:45
Alignment explanation
Indices: 48171061--48171195 Score: 139
Period size: 45 Copynumber: 3.0 Consensus size: 45
48171051 ATGCAAACAT
* ** * *
48171061 CATAAATGAAAAAAAAATCAAGCAATATTGAAACTTTAATAATTG
1 CATAAATGAATAAAAAATCAAATAGTATTGAAAATTTAATAATTG
* **
48171106 CATAAATGAATAAAATATCAAATAGTATTTCAAATTTAATTAAATTTG
1 CATAAATGAATAAAAAATCAAATAGTATTGAAAATTTAA-T-AA-TTG
* *
48171154 CATAAATTAA-AAAAAATCGAATAGTATTGAAAATTTAA-AATT
1 CATAAATGAATAAAAAATCAAATAGTATTGAAAATTTAATAATT
48171196 ATCACTTACC
Statistics
Matches: 74, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
43 2 0.03
44 2 0.03
45 31 0.42
46 1 0.01
47 26 0.35
48 12 0.16
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (45 bp):
CATAAATGAATAAAAAATCAAATAGTATTGAAAATTTAATAATTG
Found at i:48187456 original size:19 final size:19
Alignment explanation
Indices: 48187432--48187476 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
48187422 GTCCCGAATT
48187432 GCCTCGATGTATGTTTTAG
1 GCCTCGATGTATGTTTTAG
48187451 GCCTCGATGTATGTTTTAG
1 GCCTCGATGTATGTTTTAG
48187470 GCCTCGA
1 GCCTCGA
48187477 AGGCCTGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.16, C:0.20, G:0.27, T:0.38
Consensus pattern (19 bp):
GCCTCGATGTATGTTTTAG
Found at i:48191889 original size:96 final size:96
Alignment explanation
Indices: 48191749--48191940 Score: 375
Period size: 96 Copynumber: 2.0 Consensus size: 96
48191739 TCAATCAGAC
48191749 CCCTCTAATGTGATTTCACCGGTAGAGATTGAGATTAGACCGGATATCGATTATGGCGAGGAACC
1 CCCTCTAATGTGATTTCACCGGTAGAGATTGAGATTAGACCGGATATCGATTATGGCGAGGAACC
48191814 GGTCAAGATTTTAGCTCGCGATATTAAACAG
66 GGTCAAGATTTTAGCTCGCGATATTAAACAG
*
48191845 CCCTCTAATGTGATTTCACCGGTAGAGATTGAGATTAGACCGGATATGGATTATGGCGAGGAACC
1 CCCTCTAATGTGATTTCACCGGTAGAGATTGAGATTAGACCGGATATCGATTATGGCGAGGAACC
48191910 GGTCAAGATTTTAGCTCGCGATATTAAACAG
66 GGTCAAGATTTTAGCTCGCGATATTAAACAG
48191941 TTGAGAAATA
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 95 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (96 bp):
CCCTCTAATGTGATTTCACCGGTAGAGATTGAGATTAGACCGGATATCGATTATGGCGAGGAACC
GGTCAAGATTTTAGCTCGCGATATTAAACAG
Found at i:48192177 original size:42 final size:42
Alignment explanation
Indices: 48192097--48192182 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 42
48192087 GGGGAAGAAA
* *
48192097 TGTAACATCCCGAAATAGGGCCTAGTCGGAACAATGGTTTCG
1 TGTAACATCCCGAAATAGGGCCTAATCAGAACAATGGTTTCG
* * * * *
48192139 TGTAATATCCCGAATTAGGGCCTAATCATAATAGTGGTTTCG
1 TGTAACATCCCGAAATAGGGCCTAATCAGAACAATGGTTTCG
48192181 TG
1 TG
48192183 ACCACAAATC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (42 bp):
TGTAACATCCCGAAATAGGGCCTAATCAGAACAATGGTTTCG
Found at i:48198247 original size:336 final size:336
Alignment explanation
Indices: 48197633--48198305 Score: 1283
Period size: 336 Copynumber: 2.0 Consensus size: 336
48197623 TAAGCAAGGA
48197633 CTAAATTGTAAAAATTGTAAAATTTAGGGCAAAAGTGTAATTTTAGGGATAAAGGGTATAGACTG
1 CTAAATTGTAAAAATTGTAAAATTTAGGGCAAAAGTGTAATTTTAGGGATAAAGGGTATAGACTG
48197698 TGAAGTAGAGTAAAATTGAAATGAATTCTAATAAATGAATGATTTTACAATTATAGATCAAAAAC
66 TGAAGTAGAGTAAAATTGAAATGAATTCTAATAAATGAATGATTTTACAATTATAGATCAAAAAC
48197763 CCGAAGTGAATCGTAGAAAAGAGAAAATAGCCGATTAGTCCAAGAACTTGTACAACTTTTGCAAA
131 CCGAAGTGAATCGTAGAAAAGAGAAAATAGCCGATTAGTCCAAGAACTTGTACAACTTTTGCAAA
* *
48197828 TTTGCCTAGGTAAGTTCATATGGCTAAATTTAATGAATTGTTATGAAAATTCATGGATGCTATGG
196 TTTGCCCAGGTAAGTTCATATGGCTAAATTTAATGAATTGTTATGAAAATTCATGAATGCTATGG
48197893 TATGGTATTGTATATGAATGTTATTAAGCTGAGATAATTGTGAAAGTATGAATATTTGAATCGGA
261 TATGGTATTGTATATGAATGTTATTAAGCTGAGATAATTGTGAAAGTATGAATATTTGAATCGGA
48197958 TTGAGTACTTT
326 TTGAGTACTTT
*
48197969 CTAAATTGTAAAAATTGTAAAATTTAGGGCAAAAGTGTAATTTTGGGGATAAAGGGTATAGACTG
1 CTAAATTGTAAAAATTGTAAAATTTAGGGCAAAAGTGTAATTTTAGGGATAAAGGGTATAGACTG
48198034 TGAAGTAGAGTAAAATTGAAATGAATTCTAATAAATGAATGATTTTACAATTATAGATCAAAAAC
66 TGAAGTAGAGTAAAATTGAAATGAATTCTAATAAATGAATGATTTTACAATTATAGATCAAAAAC
* * *
48198099 CTGAAGTGAATCGTAGAAAAGAGAAAATAGTCGATTAGTCCATGAACTTGTACAACTTTTGCAAA
131 CCGAAGTGAATCGTAGAAAAGAGAAAATAGCCGATTAGTCCAAGAACTTGTACAACTTTTGCAAA
48198164 TTTGCCCAGGTAAGTTCATATGGCTAAATTTAATGAATTGTTATGAAAATTCATGAATGCTATGG
196 TTTGCCCAGGTAAGTTCATATGGCTAAATTTAATGAATTGTTATGAAAATTCATGAATGCTATGG
*
48198229 TATGGTATTGTCTATGAATGTTATTAAGCTGAGATAATTGTGAAAGTATGAATATTTGAATCGGA
261 TATGGTATTGTATATGAATGTTATTAAGCTGAGATAATTGTGAAAGTATGAATATTTGAATCGGA
48198294 TTGAGTACTTT
326 TTGAGTACTTT
48198305 C
1 C
48198306 ATTCAGTGAC
Statistics
Matches: 330, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
336 330 1.00
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (336 bp):
CTAAATTGTAAAAATTGTAAAATTTAGGGCAAAAGTGTAATTTTAGGGATAAAGGGTATAGACTG
TGAAGTAGAGTAAAATTGAAATGAATTCTAATAAATGAATGATTTTACAATTATAGATCAAAAAC
CCGAAGTGAATCGTAGAAAAGAGAAAATAGCCGATTAGTCCAAGAACTTGTACAACTTTTGCAAA
TTTGCCCAGGTAAGTTCATATGGCTAAATTTAATGAATTGTTATGAAAATTCATGAATGCTATGG
TATGGTATTGTATATGAATGTTATTAAGCTGAGATAATTGTGAAAGTATGAATATTTGAATCGGA
TTGAGTACTTT
Found at i:48198427 original size:47 final size:48
Alignment explanation
Indices: 48198360--48198514 Score: 190
Period size: 47 Copynumber: 3.3 Consensus size: 48
48198350 CATGGCAATA
* * * * *
48198360 TGTGATATATGATTTCCGTATAAGACCATAGCTGGGCTACGGCATCGG
1 TGTGATATGTGATTTTCGTATAAGACCATATCTGGGATATGGCATCGG
48198408 TGTGATATGTG-TTTTCGTATAAGACCATATCTGGGATATGGCATCGG
1 TGTGATATGTGATTTTCGTATAAGACCATATCTGGGATATGGCATCGG
** * *
48198455 TGAAATATGTGCTTCTT--TGTAAGACCATATCTGGGATATGGCATCGG
1 TGTGATATGTGATT-TTCGTATAAGACCATATCTGGGATATGGCATCGG
*
48198502 TATGATATGTGAT
1 TGTGATATGTGAT
48198515 CCATGTAAAA
Statistics
Matches: 93, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
47 79 0.85
48 12 0.13
49 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.34
Consensus pattern (48 bp):
TGTGATATGTGATTTTCGTATAAGACCATATCTGGGATATGGCATCGG
Found at i:48199977 original size:24 final size:24
Alignment explanation
Indices: 48199861--48200021 Score: 137
Period size: 24 Copynumber: 6.6 Consensus size: 24
48199851 CAATCGATTT
*
48199861 CGCACACATACTGCTATTCAAATC
1 CGCACACATAGTGCTATTCAAATC
* * * * *
48199885 CGCACACTTAGTGCCATGCCAACC
1 CGCACACATAGTGCTATTCAAATC
**
48199909 CGCACACATAGTGCCT-TAGAAATC
1 CGCACACATAGTG-CTATTCAAATC
* *
48199933 CACACACTCATATTGAC-ATTCAAATC
1 CGCACA--CATAGTG-CTATTCAAATC
* *
48199959 AGCACACATAGTGCTATTCAATTC
1 CGCACACATAGTGCTATTCAAATC
*
48199983 CGCACACATAGTGCCATTCAAAATC
1 CGCACACATAGTGCTATTC-AAATC
*
48200008 CGCACACTTAGTGC
1 CGCACACATAGTGC
48200022 CAATGTCATT
Statistics
Matches: 106, Mismatches: 25, Indels: 11
0.75 0.18 0.08
Matches are distributed among these distances:
23 1 0.01
24 70 0.66
25 18 0.17
26 17 0.16
ACGTcount: A:0.32, C:0.32, G:0.12, T:0.23
Consensus pattern (24 bp):
CGCACACATAGTGCTATTCAAATC
Found at i:48199997 original size:74 final size:75
Alignment explanation
Indices: 48199876--48200015 Score: 187
Period size: 74 Copynumber: 1.9 Consensus size: 75
48199866 ACATACTGCT
* *
48199876 ATTCAAATCCGCACACTTAGTGCCATGCCAACCCGCACACATAGTGCC-TT-AGAAATCCACACA
1 ATTCAAATCAGCACACATAGTGCCATGCCAACCCGCACACATAGTGCCATTCA-AAATCCACACA
48199939 CTCATATTGAC
65 CTCATATTGAC
* * * *
48199950 ATTCAAATCAGCACACATAGTGCTAT-TCAATTCCGCACACATAGTGCCATTCAAAATCCGCACA
1 ATTCAAATCAGCACACATAGTGCCATGCCAA-CCCGCACACATAGTGCCATTCAAAATCCACACA
48200014 CT
65 CT
48200016 TAGTGCCAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
73 3 0.05
74 39 0.68
75 14 0.25
76 1 0.02
ACGTcount: A:0.34, C:0.32, G:0.11, T:0.23
Consensus pattern (75 bp):
ATTCAAATCAGCACACATAGTGCCATGCCAACCCGCACACATAGTGCCATTCAAAATCCACACAC
TCATATTGAC
Found at i:48212168 original size:2 final size:2
Alignment explanation
Indices: 48212161--48212194 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
48212151 AGCAAAGATC
48212161 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
48212195 AGTGAACATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:48213216 original size:21 final size:21
Alignment explanation
Indices: 48213190--48213229 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
48213180 ACCATACAAG
48213190 TATTGTGTT-GATTAATTAAAA
1 TATTGT-TTAGATTAATTAAAA
48213211 TATTGTTTAGATTAATTAA
1 TATTGTTTAGATTAATTAA
48213230 TTAATTCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (21 bp):
TATTGTTTAGATTAATTAAAA
Found at i:48216697 original size:15 final size:15
Alignment explanation
Indices: 48216677--48216706 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
48216667 TTTACTATTA
48216677 TGTCTTTCATATTTT
1 TGTCTTTCATATTTT
*
48216692 TGTCTTTTATATTTT
1 TGTCTTTCATATTTT
48216707 GTATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.10, G:0.07, T:0.70
Consensus pattern (15 bp):
TGTCTTTCATATTTT
Found at i:48216706 original size:14 final size:14
Alignment explanation
Indices: 48216666--48216708 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
48216656 TTATTTCACA
*
48216666 TTTTACTATTATGTC
1 TTTTA-TATTTTGTC
*
48216681 TTTCATATTTTTGTC
1 TTTTATA-TTTTGTC
48216696 TTTTATATTTTGT
1 TTTTATATTTTGT
48216709 ATGCATAGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.16, C:0.09, G:0.07, T:0.67
Consensus pattern (14 bp):
TTTTATATTTTGTC
Found at i:48222159 original size:46 final size:44
Alignment explanation
Indices: 48221990--48222203 Score: 171
Period size: 46 Copynumber: 4.6 Consensus size: 44
48221980 ATTGTGAGCT
* ** *
48221990 AGTGTAAGACATGTCTAGGACATGCATCGACCATATTATGA-GAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCC-T-CGA-GAGGTGCC
* * * * *
48222036 AGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGA-G-GTGCC
*
48222084 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGGTAAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAGGT--GCC
* * **
48222130 AGTGTAAGACATGTCTAGGACATGTATCGG-CTACGAGATGTGTT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCT-CGAGAGGTGCC
*
48222174 AGCGTAAGACCATGTCTAGGACATGGCATC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATC
48222204 AGCATAGATA
Statistics
Matches: 140, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
44 11 0.08
45 19 0.14
46 65 0.46
47 26 0.19
48 19 0.14
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAGGTGCC
Found at i:48229040 original size:148 final size:148
Alignment explanation
Indices: 48228772--48229067 Score: 511
Period size: 148 Copynumber: 2.0 Consensus size: 148
48228762 TGTATATGAT
*
48228772 GTTGAAAATATACCTGACAAAGCCCGATTAATGAAAATGCCTGATAAAGGATAAATGAGAAAAAT
1 GTTGAAAATATACCTGACAAAGCCCGATTAATGAAAATGCCTGATAAAGGATAAATAAGAAAAAT
* * * *
48228837 GTTACTTTTATGCTTGGAACGAATGTGGAGTGTGATCATTTAAATTATATGAATGTCAAATATGT
66 GTTACTTTTATGCTTGAAACGAATGTGGAATATGATCATTTAAATTATATGAATGTCAAAGATGT
*
48228902 ATGAAATAATTACGTGCC
131 AAGAAATAATTACGTGCC
*
48228920 GTTGAAAATATACCTGACAAAGCCCGATTAATGAAAATTCCTGATAAAGGATAAATAAGAAAAAT
1 GTTGAAAATATACCTGACAAAGCCCGATTAATGAAAATGCCTGATAAAGGATAAATAAGAAAAAT
*
48228985 GTTACTTTTATGCTTGAAACGAATGTGGAATATGATCATTTAAATTATATGAATGTCATAGATGT
66 GTTACTTTTATGCTTGAAACGAATGTGGAATATGATCATTTAAATTATATGAATGTCAAAGATGT
*
48229050 AAGAAATAATTATGTGCC
131 AAGAAATAATTACGTGCC
48229068 AGGAAATGCT
Statistics
Matches: 139, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
148 139 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (148 bp):
GTTGAAAATATACCTGACAAAGCCCGATTAATGAAAATGCCTGATAAAGGATAAATAAGAAAAAT
GTTACTTTTATGCTTGAAACGAATGTGGAATATGATCATTTAAATTATATGAATGTCAAAGATGT
AAGAAATAATTACGTGCC
Done.