Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 149 of 352
Found at i:48975254 original size:49 final size:47
Alignment explanation
Indices: 48975134--48975457 Score: 217
Period size: 46 Copynumber: 6.9 Consensus size: 47
48975124 GGTATAATGT
* * *
48975134 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGC
*
48975181 CGATGCCATGTCCCAGACATGGTCTTATACTGACT-ATCGAAATCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATCAA-GC
* * * **
48975230 CGATACCATGTCCCTGACATGGTCTTACACTAGCTCTCA-CATATTCGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-G-ACTCATCA-A-TCAAGC
* * *
48975280 CAATGCCATGTCCCAGACATGGTCTTACACTGACAT-ATC--TCGTATC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-TCATCAATC-AAGC
* * * *
48975326 AGATG-CATGTCTCAGACAT-GTCTTACACTGGCTTACATC--TCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-T-CATCAATC-AAGC
* * **
48975372 TGATG-CATGCCCCAGACAT-GTCTTACACT-AGCTC-TCGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCATC-AATCAA-GC
* *
48975418 CGATGCCATGTCCCAGACATAGTCTTACACTGGCTC-TCAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAA
48975458 GTAACCCGAA
Statistics
Matches: 221, Mismatches: 35, Indels: 42
0.74 0.12 0.14
Matches are distributed among these distances:
43 2 0.01
44 14 0.06
45 17 0.08
46 49 0.22
47 46 0.21
48 22 0.10
49 33 0.15
50 32 0.14
51 5 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGC
Found at i:48975312 original size:99 final size:97
Alignment explanation
Indices: 48975134--48975318 Score: 250
Period size: 96 Copynumber: 1.9 Consensus size: 97
48975124 GGTATAATGT
* * *
48975134 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAGAC
1 CGATACCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCAATGCCATGTCCCAGAC
*
48975199 ATGGTCTTATACTGAC-TATCGAAATCAAGGC
66 ATGGTCTTACACTGACATATCGAAATCAAGGC
* *
48975230 CGATACCATGTCCCTGACATGGTCTTACACTAGCTC-TCACAT-ATTCGTGCCAATGCCATGTCC
1 CGATACCATGTCCCAGACATGGTCTTACACTAGCTCATC-CATCA--AGT--CAATGCCATGTCC
48975293 CAGACATGGTCTTACACTGACATATC
61 CAGACATGGTCTTACACTGACATATC
48975319 TCGTATCAGA
Statistics
Matches: 77, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
95 3 0.04
96 36 0.47
97 2 0.03
99 32 0.42
100 4 0.05
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (97 bp):
CGATACCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCAATGCCATGTCCCAGAC
ATGGTCTTACACTGACATATCGAAATCAAGGC
Found at i:48975888 original size:52 final size:52
Alignment explanation
Indices: 48975806--48975907 Score: 159
Period size: 52 Copynumber: 2.0 Consensus size: 52
48975796 CATGCTCATT
* * *
48975806 TAATCATACGGACTTACCTCAAATGGAATTTTGGCTAATTATTCTCTTTTAG
1 TAATCACACGGACTTACCTCAAATGCAATTTCGGCTAATTATTCTCTTTTAG
* *
48975858 TAATCACATGGACTTACCTCAAATGCAATTTCGGCTAATTATTCTTTTTT
1 TAATCACACGGACTTACCTCAAATGCAATTTCGGCTAATTATTCTCTTTT
48975908 TGTCTTTAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.41
Consensus pattern (52 bp):
TAATCACACGGACTTACCTCAAATGCAATTTCGGCTAATTATTCTCTTTTAG
Found at i:48979794 original size:18 final size:19
Alignment explanation
Indices: 48979761--48979796 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
48979751 GCTTCATTCC
48979761 CACTCATCTCTCTCTCTTG
1 CACTCATCTCTCTCTCTTG
*
48979780 CACTCA-CTTTCTCTCTT
1 CACTCATCTCTCTCTCTT
48979797 CTATTCCCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.11, C:0.42, G:0.03, T:0.44
Consensus pattern (19 bp):
CACTCATCTCTCTCTCTTG
Found at i:48987388 original size:52 final size:52
Alignment explanation
Indices: 48987310--48987410 Score: 184
Period size: 52 Copynumber: 1.9 Consensus size: 52
48987300 TGAATGAATG
*
48987310 GTTCACCCAGCACATTGGAACCAATCCGACTGGACAACAACCTCACCCCCTA
1 GTTCACCCAACACATTGGAACCAATCCGACTGGACAACAACCTCACCCCCTA
*
48987362 GTTCACCCAACACATTGGAACCAATCCGACTGTACAACAACCTCACCCC
1 GTTCACCCAACACATTGGAACCAATCCGACTGGACAACAACCTCACCCC
48987411 TAGGTTAATC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.32, C:0.41, G:0.12, T:0.16
Consensus pattern (52 bp):
GTTCACCCAACACATTGGAACCAATCCGACTGGACAACAACCTCACCCCCTA
Found at i:48994570 original size:40 final size:40
Alignment explanation
Indices: 48994513--48994730 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
48994503 CGGATGATAA
* * *
48994513 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
48994553 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
48994593 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
48994633 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48994673 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
48994713 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
48994731 TACTTAGTTT
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 17 0.10
40 147 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48996617 original size:43 final size:43
Alignment explanation
Indices: 48996570--48996678 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 43
48996560 CCCCGATTGA
* **
48996570 GATTTACGTATAAGACCATGTCTGGGACATCGGCATC-ATATCT
1 GATTTACGTGTAAGACCATGTCTGGGACAGAGGCATCGATAT-T
* *
48996613 GATTT-TGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATT
1 GATTTACGTGTAAGACCATGTCTGGGACAGAGGCATCGATATT
* * *
48996655 GAATTACATGTAAGACCACGTCTG
1 GATTTACGTGTAAGACCATGTCTG
48996679 AGATGTCGGC
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 31 0.57
43 23 0.43
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (43 bp):
GATTTACGTGTAAGACCATGTCTGGGACAGAGGCATCGATATT
Found at i:48999702 original size:21 final size:21
Alignment explanation
Indices: 48999678--48999747 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
48999668 TGATCTAAAC
48999678 TCATTGAATTGTGGTCTGAGT
1 TCATTGAATTGTGGTCTGAGT
* *
48999699 TCA-TGATATATGTGATATCTGAGC
1 TCATTGA-AT-TGTG--GTCTGAGT
*
48999723 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAATTGTGGTCTGAGT
48999744 TCAT
1 TCAT
48999748 GATGTATGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
20 3 0.08
21 15 0.38
22 4 0.10
23 4 0.10
24 10 0.26
25 3 0.08
ACGTcount: A:0.21, C:0.11, G:0.26, T:0.41
Consensus pattern (21 bp):
TCATTGAATTGTGGTCTGAGT
Found at i:49003691 original size:36 final size:36
Alignment explanation
Indices: 49003644--49003717 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
49003634 GAGAAGGAAG
*
49003644 AGCATCAAGTTCCTTCAAGTCTTCTTTAGCCTATCT
1 AGCATCAAGTTCCTTCAAGTCATCTTTAGCCTATCT
*
49003680 AGCATCAAGTTCCTTCAGGTCATCTTTAGCCTATCT
1 AGCATCAAGTTCCTTCAAGTCATCTTTAGCCTATCT
49003716 AG
1 AG
49003718 ATTCTGTAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (36 bp):
AGCATCAAGTTCCTTCAAGTCATCTTTAGCCTATCT
Found at i:49013474 original size:13 final size:13
Alignment explanation
Indices: 49013456--49013480 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49013446 CCTAATAGGT
49013456 AATTGAACTTGAA
1 AATTGAACTTGAA
49013469 AATTGAACTTGA
1 AATTGAACTTGA
49013481 GATTGTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.16, T:0.32
Consensus pattern (13 bp):
AATTGAACTTGAA
Found at i:49018150 original size:15 final size:16
Alignment explanation
Indices: 49018123--49018153 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
49018113 TTAAGCTAAA
49018123 GAAAGTAAATGAAATG
1 GAAAGTAAATGAAATG
49018139 GAAAGT-AATGAAATG
1 GAAAGTAAATGAAATG
49018154 CAAATGAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.55, C:0.00, G:0.26, T:0.19
Consensus pattern (16 bp):
GAAAGTAAATGAAATG
Found at i:49018629 original size:15 final size:16
Alignment explanation
Indices: 49018609--49018638 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49018599 TGGTGCCTTG
49018609 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
49018624 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
49018639 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:49021095 original size:15 final size:14
Alignment explanation
Indices: 49021072--49021107 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
49021062 CACAATTCAC
*
49021072 TATTTTGTCTTTTG
1 TATTTTGTCTTTTA
49021086 TATTTATGTCTTTTA
1 TATTT-TGTCTTTTA
49021101 TATTTTG
1 TATTTTG
49021108 CATGCATAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.14, C:0.06, G:0.11, T:0.69
Consensus pattern (14 bp):
TATTTTGTCTTTTA
Found at i:49026737 original size:46 final size:47
Alignment explanation
Indices: 49026548--49026758 Score: 164
Period size: 46 Copynumber: 4.5 Consensus size: 47
49026538 TGTGTGAGCT
* * ** *
49026548 AGTGTAAGACATGTCTGGGACATGCATCGACCACA-TTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGATGATAGCC
* * ** ** ** *
49026594 AGTGTAAAACCATGTCTGGGACATGGCATCAGC-ATTGAGACAAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAGAGATGATAGCC
* **
49026642 AGTGTAAGACATGTCTGGGACATGTATCGGCCT-C-GAGGCG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACAGAGATGAT-AGCC
*
49026688 AGTGTAAGACATGTCTGGGACATGCATCGGCTA-AGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGATGATAGCC
*
49026734 AGTGTAAGACCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
49026759 GCATATACTT
Statistics
Matches: 130, Mismatches: 25, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
45 2 0.02
46 64 0.49
47 45 0.35
48 19 0.15
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGATGATAGCC
Found at i:49026804 original size:140 final size:140
Alignment explanation
Indices: 49026548--49026805 Score: 326
Period size: 140 Copynumber: 1.8 Consensus size: 140
49026538 TGTGTGAGCT
** *
49026548 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCAGTGTAAAACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACAAGATGAGAGCCAGTGTAAAACCATGTCTAG
* * * **
49026613 GACATGGCATCAGCATTGAGACAAGGGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGA
66 GACATGGCATCAACATTGAGACAAGAGCCAGTGTAAGACATGTCTAAGACATGTATCGGCCTCGA
49026678 GGCGTAAGCC
131 GGCGTAAGCC
* * * * *
49026688 AGTGTAAGACATGTCTGGGACATGCATCGGCTA-AGAGATGATAGTCAGTGTAAGACCATGTCTA
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACA-AGATGAGAGCCAGTGTAAAACCATGTCTA
*
49026752 GGACATGGCAT-ATAC-TTGAG-CTATGAGCCAGTGTAAGACTATGTCTAAGACATG
65 GGACATGGCATCA-ACATTGAGAC-AAGAGCCAGTGTAAGAC-ATGTCTAAGACATG
49026806 GCATTGGCAC
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
138 1 0.01
139 21 0.21
140 78 0.78
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACAAGATGAGAGCCAGTGTAAAACCATGTCTAG
GACATGGCATCAACATTGAGACAAGAGCCAGTGTAAGACATGTCTAAGACATGTATCGGCCTCGA
GGCGTAAGCC
Found at i:49034209 original size:47 final size:45
Alignment explanation
Indices: 49034141--49034451 Score: 243
Period size: 47 Copynumber: 6.6 Consensus size: 45
49034131 TGTGTGAGCA
**
49034141 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATAAGAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-AAGATAAGAGTC
** * *
49034187 AGTGTAAGACCATGTCCAGGACATGGCATCGG-CATTAAGACAAG-GGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--AAGATAAGAGTC
* * *
49034234 TAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGATAGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCAA-AGATAAGAGTC
** *
49034281 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCCAGACGT-A-AGCC
1 AGTGTAAGA-CATGTCTGGGACATGCATCGGCC-AAAGA--TAAGAGTC
* * *
49034328 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAA-AGATAAGAGTC
** *** * * *
49034374 AGTGTAAGACCATGTCTGGGACATGGCATCTACTTGAGCTATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAAAGATAAGAGTC
49034421 AGTGTAAGACCATGTCTGGGACATGACATCG
1 AGTGTAAGA-CATGTCTGGGACATG-CATCG
49034452 ACACTTAACC
Statistics
Matches: 216, Mismatches: 32, Indels: 33
0.77 0.11 0.12
Matches are distributed among these distances:
44 1 0.00
45 2 0.01
46 67 0.31
47 116 0.54
48 29 0.13
49 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCAAAGATAAGAGTC
Found at i:49034359 original size:93 final size:93
Alignment explanation
Indices: 49034141--49034451 Score: 389
Period size: 93 Copynumber: 3.3 Consensus size: 93
49034131 TGTGTGAGCA
* ** * * **
49034141 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TTATAAGAGTCAGTGTAAGACCATGTCCA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTA-AGAGATGATAGTCAGTGTAAGACCATGTCTG
* *
49034205 GGACATGGCATCGGCATTAAGAC-AAGGGCT
65 GGACATGGCATCGGCCTTAAGACTAA--GCC
49034235 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGATAGTCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGATAGTCAGTGTAAGACCATGTCTGG
**
49034300 GACAT-GCATCGGCCTCCAGACGTAAGCC
66 GACATGGCATCGGCCTTAAGAC-TAAGCC
49034328 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGATAGTCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGATAGTCAGTGTAAGACCATGTCTGG
** *
49034393 GACATGGCATC-TACTTGAG-CTATGAGCC
66 GACATGGCATCGGCCTTAAGACTA--AGCC
49034421 AGTGTAAGACCATGTCTGGGACATGACATCG
1 AGTGTAAGA-CATGTCTGGGACATG-CATCG
49034452 ACACTTAACC
Statistics
Matches: 194, Mismatches: 15, Indels: 15
0.87 0.07 0.07
Matches are distributed among these distances:
91 2 0.01
92 1 0.01
93 103 0.53
94 81 0.42
95 7 0.04
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGATAGTCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCCTTAAGACTAAGCC
Found at i:49035550 original size:20 final size:21
Alignment explanation
Indices: 49035493--49035550 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
49035483 GGGTGTGGGG
*
49035493 CACGGGTGTGTTACCCTCCCA
1 CACGGGCGTGTTACCCTCCCA
*
49035514 CACGGGCGTGTTACCCTTCCA
1 CACGGGCGTGTTACCCTCCCA
49035535 CACGGGCGTG-TACCCT
1 CACGGGCGTGTTACCCT
49035551 ATTTTAAAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 6 0.17
21 29 0.83
ACGTcount: A:0.14, C:0.38, G:0.26, T:0.22
Consensus pattern (21 bp):
CACGGGCGTGTTACCCTCCCA
Found at i:49036297 original size:19 final size:19
Alignment explanation
Indices: 49036259--49036297 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
49036249 CAAACCCTCA
* *
49036259 AAAATTTTTATTTTCCCCC
1 AAAATTTTTACTCTCCCCC
*
49036278 AAAATTTTTACTCTCTCCC
1 AAAATTTTTACTCTCCCCC
49036297 A
1 A
49036298 CTTTTCCCCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (19 bp):
AAAATTTTTACTCTCCCCC
Found at i:49040282 original size:6 final size:6
Alignment explanation
Indices: 49040245--49040271 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
49040235 TGTAGTTCCC
49040245 TTTTTG TTTTTG TTTTTG TTTTTG TTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTT
49040272 CTTTTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:49042594 original size:36 final size:37
Alignment explanation
Indices: 49042553--49042628 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 37
49042543 TTGTAATTAA
*
49042553 AATAAATTATGTTATTCGGAAG-TATTTTAAT-TTTTT
1 AATAAATTATGTTATTC-AAAGATATTTTAATCTTTTT
*
49042589 AATAAATTATTTTATTCAAAGATATTTTAATCTTTTT
1 AATAAATTATGTTATTCAAAGATATTTTAATCTTTTT
49042626 AAT
1 AAT
49042629 TTAAAAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
35 3 0.08
36 25 0.69
37 8 0.22
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.53
Consensus pattern (37 bp):
AATAAATTATGTTATTCAAAGATATTTTAATCTTTTT
Found at i:49046831 original size:13 final size:13
Alignment explanation
Indices: 49046813--49046837 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49046803 GGTTTGTTTA
49046813 TTAAACTAATTAT
1 TTAAACTAATTAT
49046826 TTAAACTAATTA
1 TTAAACTAATTA
49046838 ACAGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:49049774 original size:6 final size:6
Alignment explanation
Indices: 49049765--49049827 Score: 67
Period size: 6 Copynumber: 10.8 Consensus size: 6
49049755 AATAAAATTG
* * *
49049765 AAATGA AAATAA AAATCA AAAGAA AAATAA AAAT-A AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
* *
49049812 AACTAA ATA-AA AAATA
1 AAATAA AAATAA AAATA
49049828 GGAGGATTCA
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
5 9 0.20
6 37 0.80
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:49049824 original size:17 final size:18
Alignment explanation
Indices: 49049746--49049827 Score: 73
Period size: 17 Copynumber: 4.7 Consensus size: 18
49049736 ATGTCTTTCA
* *
49049746 AAATAAAATAATAAAATTG
1 AAATAAAA-AATAAAAATC
*
49049765 AAAT-GAAAATAAAAATC
1 AAATAAAAAATAAAAATC
*
49049782 AAA-AGAAAAATAAAAATA
1 AAATA-AAAAATAAAAATC
*
49049800 AAAT-AAAAATAAAACT-
1 AAATAAAAAATAAAAATC
49049816 AAATAAAAAATA
1 AAATAAAAAATA
49049828 GGAGGATTCA
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
16 4 0.08
17 29 0.55
18 16 0.30
19 4 0.08
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (18 bp):
AAATAAAAAATAAAAATC
Found at i:49055148 original size:13 final size:13
Alignment explanation
Indices: 49055130--49055154 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49055120 GGTTTGTTTA
49055130 TTAAACTAATTAT
1 TTAAACTAATTAT
49055143 TTAAACTAATTA
1 TTAAACTAATTA
49055155 ACGGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:49068768 original size:13 final size:12
Alignment explanation
Indices: 49068732--49068769 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
49068722 TCGCCCGTAT
49068732 TAATTTTTAATA
1 TAATTTTTAATA
*
49068744 TTATTTTT-ATA
1 TAATTTTTAATA
49068755 TAATTTTTAAATA
1 TAATTTTT-AATA
49068768 TA
1 TA
49068770 TATAATACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
11 10 0.45
12 7 0.32
13 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TAATTTTTAATA
Found at i:49068929 original size:30 final size:30
Alignment explanation
Indices: 49068886--49068943 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
49068876 CTTAACAAGA
49068886 AAATGCCTATAAAATAATAAAAAAATTAAC
1 AAATGCCTATAAAATAATAAAAAAATTAAC
* * *
49068916 AAATGGCTTTAAAATAATAACAAAATTA
1 AAATGCCTATAAAATAATAAAAAAATTA
49068944 GCAATAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.26
Consensus pattern (30 bp):
AAATGCCTATAAAATAATAAAAAAATTAAC
Found at i:49071013 original size:41 final size:41
Alignment explanation
Indices: 49070968--49071055 Score: 115
Period size: 41 Copynumber: 2.1 Consensus size: 41
49070958 AAACAGGTTT
*
49070968 TTAGCGGCGTTT-GAATAGAAAACGCCACTAAAAATCAAGCA
1 TTAGCGGCGTTTCGAA-AAAAAACGCCACTAAAAATCAAGCA
* * * *
49071009 TTAGCGGCGTTTCTAAAAAAAACGCCGCTAAAGATCGAGCA
1 TTAGCGGCGTTTCGAAAAAAAACGCCACTAAAAATCAAGCA
49071050 TTAGCG
1 TTAGCG
49071056 CCTTTTTAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
41 39 0.95
42 2 0.05
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (41 bp):
TTAGCGGCGTTTCGAAAAAAAACGCCACTAAAAATCAAGCA
Found at i:49071082 original size:39 final size:40
Alignment explanation
Indices: 49071034--49071111 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 40
49071024 AAAAAAACGC
49071034 CGCTAAAGATCGAGCATTAGC-GCCTTTTTAAGAAAGTGT
1 CGCTAAAGATCGAGCATTAGCGGCCTTTTTAAGAAAGTGT
**
49071073 CGCTAAAGATCGAGCATTAGCGGTGTTTTTAAGAAAGTG
1 CGCTAAAGATCGAGCATTAGCGGCCTTTTTAAGAAAGTG
49071112 CCGTTATGGG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
39 21 0.58
40 15 0.42
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (40 bp):
CGCTAAAGATCGAGCATTAGCGGCCTTTTTAAGAAAGTGT
Found at i:49072065 original size:14 final size:14
Alignment explanation
Indices: 49072043--49072087 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
49072033 TAAACCCTCA
*
49072043 AAACTCCAAGCCCT
1 AAACCCCAAGCCCT
49072057 AAACCCCAA-CCCTT
1 AAACCCCAAGCCC-T
*
49072071 AAACCCCAAGCCTT
1 AAACCCCAAGCCCT
49072085 AAA
1 AAA
49072088 ACTAACCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 3 0.11
14 22 0.81
15 2 0.07
ACGTcount: A:0.40, C:0.42, G:0.04, T:0.13
Consensus pattern (14 bp):
AAACCCCAAGCCCT
Found at i:49072144 original size:14 final size:14
Alignment explanation
Indices: 49072127--49072179 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
49072117 CGTAAATCCC
49072127 AAACCCTAAACTAT
1 AAACCCTAAACTAT
*
49072141 AAACCATAAA-TCAT
1 AAACCCTAAACT-AT
* *
49072155 AAACTCTTAAACTGT
1 AAAC-CCTAAACTAT
49072170 AAACCCTAAA
1 AAACCCTAAA
49072180 ATCTAAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
13 1 0.03
14 20 0.62
15 10 0.31
16 1 0.03
ACGTcount: A:0.51, C:0.25, G:0.02, T:0.23
Consensus pattern (14 bp):
AAACCCTAAACTAT
Found at i:49072150 original size:28 final size:28
Alignment explanation
Indices: 49072098--49072179 Score: 74
Period size: 29 Copynumber: 2.9 Consensus size: 28
49072088 ACTAACCTTT
* * * *
49072098 AAACCCATAAACTATAGATCGTAAATCCC
1 AAACCC-TAAACTATAAACCATAAATCAC
*
49072127 AAACCCTAAACTATAAACCATAAATCAT
1 AAACCCTAAACTATAAACCATAAATCAC
* * *
49072155 AAACTCTTAAACTGTAAACCCTAAA
1 AAAC-CCTAAACTATAAACCATAAA
49072180 ATCTAAAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 21 0.48
29 23 0.52
ACGTcount: A:0.49, C:0.26, G:0.04, T:0.22
Consensus pattern (28 bp):
AAACCCTAAACTATAAACCATAAATCAC
Found at i:49072686 original size:6 final size:7
Alignment explanation
Indices: 49072662--49072712 Score: 50
Period size: 7 Copynumber: 7.0 Consensus size: 7
49072652 AATCTTCAAA
49072662 AAAAATT
1 AAAAATT
49072669 AAAAATT
1 AAAAATT
*
49072676 AAAAATA
1 AAAAATT
49072683 AAAAATTT
1 AAAAA-TT
*
49072691 TAAAA-T
1 AAAAATT
49072697 AAAAAGCTT
1 AAAAA--TT
49072706 AAAAATT
1 AAAAATT
49072713 TAATATTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
6 5 0.14
7 20 0.56
8 5 0.14
9 6 0.17
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (7 bp):
AAAAATT
Found at i:49072687 original size:15 final size:15
Alignment explanation
Indices: 49072669--49072711 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
49072659 AAAAAAAATT
49072669 AAAAATTAAAAATAA
1 AAAAATTAAAAATAA
* *
49072684 AAAATTTTAAAATAA
1 AAAAATTAAAAATAA
**
49072699 AAAGCTTAAAAAT
1 AAAAATTAAAAAT
49072712 TTAATATTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (15 bp):
AAAAATTAAAAATAA
Found at i:49077235 original size:20 final size:20
Alignment explanation
Indices: 49077210--49077250 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
49077200 TTTGTGGGAA
49077210 AAGCGCCGCTAAAGGCCATG
1 AAGCGCCGCTAAAGGCCATG
*
49077230 AAGCGCCGCTAAAGGTCATG
1 AAGCGCCGCTAAAGGCCATG
49077250 A
1 A
49077251 CTTTTAGCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.27, G:0.29, T:0.12
Consensus pattern (20 bp):
AAGCGCCGCTAAAGGCCATG
Found at i:49077301 original size:18 final size:18
Alignment explanation
Indices: 49077278--49077316 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
49077268 TCAAATAAAT
49077278 GCCGCAAAATTTAGCGAC
1 GCCGCAAAATTTAGCGAC
49077296 GCCGCAAAATTTAGCGAC
1 GCCGCAAAATTTAGCGAC
49077314 GCC
1 GCC
49077317 TATAGTAGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.31, G:0.23, T:0.15
Consensus pattern (18 bp):
GCCGCAAAATTTAGCGAC
Found at i:49085636 original size:45 final size:43
Alignment explanation
Indices: 49085520--49085637 Score: 123
Period size: 45 Copynumber: 2.7 Consensus size: 43
49085510 AATGGCATCA
* * * * *
49085520 TCCCAAACAGGGTCTTACACGAATCA-A-ATACGATGCCGATG
1 TCCCAGACATGGTCTTACACGAAACACATATACGATGCCAACG
*
49085561 TCCCAGACATGGTCTTACACGTAACTACATATACCGATGCCAACG
1 TCCCAGACATGGTCTTACACGAAAC-ACATATA-CGATGCCAACG
**
49085606 TCCCAGATGTGGTCTTACACGAGAACACATAT
1 TCCCAGACATGGTCTTACACGA-AACACATAT
49085638 CAGAAATTCT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
41 21 0.33
42 1 0.02
43 1 0.02
44 3 0.05
45 34 0.54
46 3 0.05
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGAAACACATATACGATGCCAACG
Found at i:49093894 original size:16 final size:15
Alignment explanation
Indices: 49093873--49093902 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
49093863 TTAAAATTAT
49093873 AAATAATATATATTTG
1 AAATAATAT-TATTTG
49093889 AAATAATATTATTT
1 AAATAATATTATTT
49093903 AAAAAATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
AAATAATATTATTTG
Found at i:49094130 original size:19 final size:22
Alignment explanation
Indices: 49094106--49094154 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
49094096 TTGTTTCACA
49094106 GAAAATAAC-T-T-GGTCAACG
1 GAAAATAACTTATAGGTCAACG
*
49094125 GAAAATGACTTATAGGTCAACG
1 GAAAATAACTTATAGGTCAACG
*
49094147 TAAAATAA
1 GAAAATAA
49094155 GTCATTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 8 0.33
20 1 0.04
21 1 0.04
22 14 0.58
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.22
Consensus pattern (22 bp):
GAAAATAACTTATAGGTCAACG
Found at i:49094337 original size:13 final size:14
Alignment explanation
Indices: 49094319--49094347 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
49094309 TTTAAAAATA
49094319 TTAAAATATTA-AT
1 TTAAAATATTATAT
49094332 TTAAAATATTATAT
1 TTAAAATATTATAT
49094346 TT
1 TT
49094348 TTTAATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTAAAATATTATAT
Found at i:49094443 original size:16 final size:18
Alignment explanation
Indices: 49094392--49094444 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 18
49094382 ATATTTAGTC
49094392 ATTTAATAAATTATTAAT
1 ATTTAATAAATTATTAAT
49094410 ATAATTAATATAATTTATT-AT
1 AT--TTAATA-AA-TTATTAAT
49094431 -TTTAATAAATTATT
1 ATTTAATAAATTATT
49094445 TGATATTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
16 5 0.16
17 2 0.06
18 8 0.26
20 7 0.23
21 4 0.13
22 5 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTAATAAATTATTAAT
Found at i:49094476 original size:13 final size:14
Alignment explanation
Indices: 49094460--49094501 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
49094450 TTTTAATTTT
49094460 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
49094473 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
49094488 ATTTTAAATAATAT
1 ATTTT-AATAATAT
49094502 TCTTCATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:49094486 original size:16 final size:16
Alignment explanation
Indices: 49094464--49094500 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
49094454 AATTTTATTT
49094464 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
49094481 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
49094496 TAATA
1 TAATA
49094501 TTCTTCATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:49100338 original size:15 final size:15
Alignment explanation
Indices: 49100318--49100374 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
49100308 ATTCAATATT
49100318 AATATTTTAATAATA
1 AATATTTTAATAATA
*
49100333 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
49100352 AATATATTAATAATA
1 AATATTTTAATAATA
*
49100367 AATGTTTT
1 AATATTTT
49100375 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:49100853 original size:14 final size:14
Alignment explanation
Indices: 49100834--49100863 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
49100824 CCAGAAAAGT
49100834 AAATCATTTTCCAG
1 AAATCATTTTCCAG
49100848 AAATCATTTTCCAG
1 AAATCATTTTCCAG
49100862 AA
1 AA
49100864 GCCATTTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:49104837 original size:21 final size:21
Alignment explanation
Indices: 49104791--49104837 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
49104781 TGCCTAGACC
* * *
49104791 ATGGGGGGTCAACACGCCCGT
1 ATGGGGGGTAAACACGACCAT
49104812 ATGGGGGGTAAACACGACCAT
1 ATGGGGGGTAAACACGACCAT
*
49104833 GTGGG
1 ATGGG
49104838 AGGAGGCACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.21, G:0.40, T:0.15
Consensus pattern (21 bp):
ATGGGGGGTAAACACGACCAT
Found at i:49105795 original size:14 final size:15
Alignment explanation
Indices: 49105769--49105799 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
49105759 TCCATATCAC
49105769 AAAAATAATAAATAA
1 AAAAATAATAAATAA
49105784 AAAAATAA-AAATAA
1 AAAAATAATAAATAA
49105798 AA
1 AA
49105800 TCTAACCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (15 bp):
AAAAATAATAAATAA
Found at i:49107337 original size:17 final size:18
Alignment explanation
Indices: 49107317--49107360 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
49107307 TTATAACATT
49107317 ATTAATATT-ATTTAAAA
1 ATTAATATTAATTTAAAA
*
49107334 ATTATATTTTAATTTAAAA
1 ATTA-ATATTAATTTAAAA
49107353 ATT-ATATT
1 ATTAATATT
49107361 TCATTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 8 0.35
18 4 0.17
19 11 0.48
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
ATTAATATTAATTTAAAA
Found at i:49107372 original size:19 final size:19
Alignment explanation
Indices: 49107326--49107373 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
49107316 TATTAATATT
*
49107326 ATTTAAAAATTATATTTTA
1 ATTTAAAAATTATATTTCA
49107345 ATTTAAAAATTATATTTCA
1 ATTTAAAAATTATATTTCA
* *
49107364 TTTTTAAAAT
1 ATTTAAAAAT
49107374 AACAAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAAAATTATATTTCA
Found at i:49108399 original size:13 final size:13
Alignment explanation
Indices: 49108381--49108405 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49108371 TTTATTAATG
49108381 TAAAATTATTTTT
1 TAAAATTATTTTT
49108394 TAAAATTATTTT
1 TAAAATTATTTT
49108406 ATAGTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAAAATTATTTTT
Found at i:49108417 original size:104 final size:105
Alignment explanation
Indices: 49108177--49108490 Score: 416
Period size: 104 Copynumber: 3.0 Consensus size: 105
49108167 TGAATGTAAT
* * * *
49108177 TTTTTTATAATTATTTTAAAATTATTTTGTTAGTAATTTATGATTACGTTATAATTTGTTTGTGT
1 TTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTACGTTATAAATTG-TTGTG-
* * *
49108242 TTTAGTTTAGTGTTTTGTGAATTTTTATTAATGTAAATTTTTG
64 TTTAGTTTAGTGTTTTGTGATTTTTTATTAATGTAAA-TATTA
* * *
49108285 TTTTTTTAAATTATTTTATAGTTATTTTGTTAATAACTTT-TTATTACGTTATAAATTGTTGTGT
1 TTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAA-TTTATGATTACGTTATAAATTGTTGTGT
* * * *
49108349 TTGGTTTAGTATTTTTTTATTTTTTATTAATGTAAA-ATTA
65 TTAGTTTAGTGTTTTGTGATTTTTTATTAATGTAAATATTA
* *
49108389 TTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTAT
1 TTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTACGTTATAAATTGTT-GTGT
*
49108454 TTAGTTTAGTGTTTTGTGATTTTTTATTGATGTAAAT
65 TTAGTTTAGTGTTTTGTGATTTTTTATTAATGTAAAT
49108491 TTTTTATAAT
Statistics
Matches: 178, Mismatches: 24, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
103 3 0.02
104 54 0.30
105 34 0.19
106 32 0.18
107 5 0.03
108 47 0.26
109 3 0.02
ACGTcount: A:0.27, C:0.01, G:0.12, T:0.60
Consensus pattern (105 bp):
TTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTACGTTATAAATTGTTGTGTT
TAGTTTAGTGTTTTGTGATTTTTTATTAATGTAAATATTA
Found at i:49114241 original size:18 final size:21
Alignment explanation
Indices: 49114203--49114244 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 21
49114193 TGACACCACT
49114203 AATAAAATAATATATTTAAAA
1 AATAAAATAATATATTTAAAA
49114224 AATAAAA-AA-ATA-TTAAAA
1 AATAAAATAATATATTTAAAA
49114242 AAT
1 AAT
49114245 TGGTGGTGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.43
19 3 0.14
20 2 0.10
21 7 0.33
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (21 bp):
AATAAAATAATATATTTAAAA
Found at i:49114242 original size:19 final size:21
Alignment explanation
Indices: 49114203--49114243 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
49114193 TGACACCACT
*
49114203 AATAAAATAATATATTTAAAA
1 AATAAAATAATATATTAAAAA
49114224 AATAAAA-AA-ATATTAAAAA
1 AATAAAATAATATATTAAAAA
49114243 A
1 A
49114244 TTGGTGGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 10 0.53
20 2 0.11
21 7 0.37
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (21 bp):
AATAAAATAATATATTAAAAA
Found at i:49114721 original size:19 final size:19
Alignment explanation
Indices: 49114679--49114729 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
49114669 AAAAATTAAA
*
49114679 AAAAATTCAAAATAATTTT
1 AAAAATTTAAAATAATTTT
*
49114698 TAAAATTTAAAAT-ATTTAT
1 AAAAATTTAAAATAATTT-T
49114717 AAAAATTTCAAAA
1 AAAAATTT-AAAA
49114730 ATTATATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 4 0.15
19 19 0.70
20 4 0.15
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATTTAAAATAATTTT
Found at i:49114752 original size:17 final size:17
Alignment explanation
Indices: 49114703--49114764 Score: 54
Period size: 18 Copynumber: 3.5 Consensus size: 17
49114693 ATTTTTAAAA
*
49114703 TTTAAAATATTTATAAAAAT
1 TTTAAAA-A-TTAT-AAATT
* *
49114723 TTCAAAAATTAT-ATTT
1 TTTAAAAATTATAAATT
49114739 TTTAAAATATTATAAATT
1 TTTAAAA-ATTATAAATT
49114757 TTTAAAAA
1 TTTAAAAA
49114765 AAATTCTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
16 8 0.23
17 6 0.17
18 14 0.40
19 1 0.03
20 6 0.17
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
TTTAAAAATTATAAATT
Found at i:49118425 original size:19 final size:20
Alignment explanation
Indices: 49118391--49118429 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
49118381 TAATATTAGT
*
49118391 TTTATTGTAGATTATAGTAA
1 TTTATTATAGATTATAGTAA
49118411 TTTATTATA-ATTATAGTAA
1 TTTATTATAGATTATAGTAA
49118430 AGATTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.51
Consensus pattern (20 bp):
TTTATTATAGATTATAGTAA
Found at i:49121372 original size:16 final size:17
Alignment explanation
Indices: 49121351--49121389 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
49121341 AAAACAATGC
49121351 ATTTTAAAATACTTT-A
1 ATTTTAAAATACTTTAA
* *
49121367 ATTTTAAATTTCTTTAA
1 ATTTTAAAATACTTTAA
49121384 ATTTTA
1 ATTTTA
49121390 GAGTTCTCGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTAAAATACTTTAA
Found at i:49121801 original size:10 final size:10
Alignment explanation
Indices: 49121766--49121811 Score: 60
Period size: 9 Copynumber: 4.8 Consensus size: 10
49121756 TAAAAAACTT
*
49121766 TTAATAATTA
1 TTAAAAATTA
49121776 TTAAAAATTA
1 TTAAAAATTA
49121786 TT-AAAATTA
1 TTAAAAATTA
49121795 TTAAAAA-TA
1 TTAAAAATTA
*
49121804 CTAAAAAT
1 TTAAAAAT
49121812 AATGTTTGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 17 0.53
10 15 0.47
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:49121810 original size:19 final size:19
Alignment explanation
Indices: 49121771--49121811 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
49121761 AACTTTTAAT
*
49121771 AATTATTAAAAATTATTAA
1 AATTATTAAAAATTATAAA
49121790 AATTATTAAAAA-TACTAAA
1 AATTATTAAAAATTA-TAAA
49121809 AAT
1 AAT
49121812 AATGTTTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (19 bp):
AATTATTAAAAATTATAAA
Found at i:49122911 original size:11 final size:11
Alignment explanation
Indices: 49122895--49122940 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
49122885 ACATTATAAA
49122895 AAATAATTTTT
1 AAATAATTTTT
49122906 AAATAATTTTGT
1 AAATAATTTT-T
49122918 --ATAATTTTT
1 AAATAATTTTT
*
49122927 TAATAATTATTT
1 AAATAATT-TTT
49122939 AA
1 AA
49122941 GAAATTCAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
9 1 0.03
10 8 0.27
11 16 0.53
12 5 0.17
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (11 bp):
AAATAATTTTT
Found at i:49136798 original size:39 final size:40
Alignment explanation
Indices: 49136698--49136882 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
49136688 TCGAATGATG
* * *
49136698 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
49136737 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
49136778 TTCGGGCTAAG-CCCGAAGGCATTAGTGCGAGCTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
49136817 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
49136856 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
49136883 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:49136904 original size:79 final size:79
Alignment explanation
Indices: 49136751--49136905 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
49136741 GGACTAAGAT
** **
49136751 CCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTAGTGCGAGCTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTAGAACGAGCTACTAA
49136816 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
49136830 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTAGAACGAGCTA-C
*
49136893 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
49136906 ATTTCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTAGAACGAGCTACTAA
ATCCGGGTTAAGTC
Found at i:49147832 original size:24 final size:24
Alignment explanation
Indices: 49147803--49147874 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 24
49147793 GGCTATGTAA
* *
49147803 CGGGAAGATCA-TAAGAGCCATAAT
1 CGGGAAGATCACAAAGAACCAT-AT
*
49147827 CGGGAAGTTCACAAAGAACCATAT
1 CGGGAAGATCACAAAGAACCATAT
* * *
49147851 CGGGAAGCTTACAAAGAGCCATAT
1 CGGGAAGATCACAAAGAACCATAT
49147875 AACGGTAGCT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 33 0.80
25 8 0.20
ACGTcount: A:0.40, C:0.19, G:0.24, T:0.17
Consensus pattern (24 bp):
CGGGAAGATCACAAAGAACCATAT
Found at i:49147832 original size:49 final size:52
Alignment explanation
Indices: 49147721--49147833 Score: 128
Period size: 49 Copynumber: 2.2 Consensus size: 52
49147711 AATTAGGGCA
*
49147721 CATAATCGGGAAGCAATATCTCGAGCCTTGTAACGGGAAGCTCACACAGAGC
1 CATAATCGGGAAGCAATATCTCGAGCCTTGTAACGGGAAGATCACACAGAGC
* * * * *
49147773 CAT-TTTGGGAAGC-TTATC-CG-GGCTATGTAACGGGAAGATCATA-AGAGC
1 CATAATCGGGAAGCAATATCTCGAGCCT-TGTAACGGGAAGATCACACAGAGC
49147821 CATAATCGGGAAG
1 CATAATCGGGAAG
49147834 TTCACAAAGA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
48 11 0.22
49 25 0.49
50 4 0.08
51 8 0.16
52 3 0.06
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.20
Consensus pattern (52 bp):
CATAATCGGGAAGCAATATCTCGAGCCTTGTAACGGGAAGATCACACAGAGC
Found at i:49147848 original size:25 final size:25
Alignment explanation
Indices: 49147815--49147873 Score: 86
Period size: 24 Copynumber: 2.4 Consensus size: 25
49147805 GGAAGATCAT
49147815 AAGAGCCATAATCGGGAAG-TTCACA
1 AAGAGCCATAATCGGGAAGCTT-ACA
*
49147840 AAGAACCAT-ATCGGGAAGCTTACA
1 AAGAGCCATAATCGGGAAGCTTACA
49147864 AAGAGCCATA
1 AAGAGCCATA
49147874 TAACGGTAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 20 0.67
25 10 0.33
ACGTcount: A:0.42, C:0.20, G:0.22, T:0.15
Consensus pattern (25 bp):
AAGAGCCATAATCGGGAAGCTTACA
Found at i:49148082 original size:24 final size:24
Alignment explanation
Indices: 49148049--49148096 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
49148039 ACAAGAATTG
*
49148049 TATAATGGGAAGCTCG-AGAGAGCT
1 TATAACGGGAAGCTCGTA-AGAGCT
*
49148073 TATAACGGGACGCTCGTAAGAGCT
1 TATAACGGGAAGCTCGTAAGAGCT
49148097 GTGGTGTGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21
Consensus pattern (24 bp):
TATAACGGGAAGCTCGTAAGAGCT
Found at i:49149197 original size:24 final size:24
Alignment explanation
Indices: 49149170--49149243 Score: 121
Period size: 24 Copynumber: 3.0 Consensus size: 24
49149160 AAGGCTGTCA
49149170 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
49149194 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
49149218 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
49149243 G
1 G
49149244 AGTAGGAGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
24 42 0.93
25 3 0.07
ACGTcount: A:0.36, C:0.05, G:0.38, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:49157314 original size:24 final size:24
Alignment explanation
Indices: 49157287--49157384 Score: 144
Period size: 24 Copynumber: 4.0 Consensus size: 24
49157277 AAGGCTGTCA
49157287 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
49157311 GGAG-AGAATTTAGGAGCTGATAAG
1 GGAGAAG-ATTTAGGAGCTGATAAG
* * *
49157335 GGAGAGGATTTAAGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
49157359 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
49157384 G
1 G
49157385 AACAGGAGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
23 2 0.03
24 59 0.91
25 4 0.06
ACGTcount: A:0.38, C:0.05, G:0.37, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:49171627 original size:25 final size:25
Alignment explanation
Indices: 49171593--49171647 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
49171583 CGGTTAAAGA
*
49171593 ATTCACACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
*
49171618 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
49171643 ATTCG
1 ATTCG
49171648 TTATTACACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.29, C:0.31, G:0.11, T:0.29
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:49171830 original size:43 final size:42
Alignment explanation
Indices: 49171766--49171908 Score: 160
Period size: 43 Copynumber: 3.3 Consensus size: 42
49171756 CTTTGCTCGA
** * *
49171766 ATCACCGGCATTAAGCTTGCTAGGCACGAAGAGCCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAG-GCCGAATACAC
* *
49171809 ATCACCGGCACGAAGCCTGCTAGGAACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGG-CCGAATACAC
* * * * *
49171852 ATCACCAGCACAAAGCCTGCTAGGCATGAAGGCCTGATTTCAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC-GAATACAC
49171895 ATCACCGGCACGAA
1 ATCACCGGCACGAA
49171909 TGCCCTTCAG
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 3 0.04
43 80 0.96
ACGTcount: A:0.33, C:0.30, G:0.22, T:0.15
Consensus pattern (42 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCGAATACAC
Found at i:49171964 original size:40 final size:39
Alignment explanation
Indices: 49171897--49172017 Score: 170
Period size: 40 Copynumber: 3.0 Consensus size: 39
49171887 GATTTCACAT
* * *
49171897 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAA
*
49171937 CACCAGCATGAATGCTCTTCGGCACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGG-ACTTAGCCCGGATATAA
*
49171977 CACCAACACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAA
49172017 C
1 C
49172018 TCTCAATTCT
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
39 2 0.03
40 69 0.95
41 2 0.03
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.20
Consensus pattern (39 bp):
CACCAGCACGAATGCTCTTCGGACTTAGCCCGGATATAA
Found at i:49177720 original size:43 final size:42
Alignment explanation
Indices: 49177656--49177764 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 42
49177646 CTTTGCTCGA
** *
49177656 ATCACCGGCATTAAGCTTGCTAGACACGAAGACCCAAATACAC
1 ATCACCGGCACAAAGCCTGCTAGA-ACGAAGACCCAAATACAC
* * * *
49177699 ATCACCGGCACGAAGCCTGCTAGGAACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTA-GAACGAAGACCCAAATACAC
*
49177742 ATCACCAGCACAAAGCCTGCTAG
1 ATCACCGGCACAAAGCCTGCTAG
49177765 GCATGAAGGC
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.02
43 54 0.95
44 2 0.04
ACGTcount: A:0.35, C:0.31, G:0.20, T:0.14
Consensus pattern (42 bp):
ATCACCGGCACAAAGCCTGCTAGAACGAAGACCCAAATACAC
Found at i:49177789 original size:43 final size:43
Alignment explanation
Indices: 49177668--49177789 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 43
49177658 CACCGGCATT
* * * * *
49177668 AAGCTTGCTA-GACACGAAGACCCAAATACACATCACCGGCACG
1 AAGCCTGCTAGGA-ACGAAGGCCCGAATACACATCACCAGCACA
*
49177711 AAGCCTGCTAGGAACGAAGGCCCGAATACATATCACCAGCACA
1 AAGCCTGCTAGGAACGAAGGCCCGAATACACATCACCAGCACA
* * * * *
49177754 AAGCCTGCTAGGCATGAAGGCCTGATTTCACATCAC
1 AAGCCTGCTAGGAACGAAGGCCCGAATACACATCAC
49177790 TGGCACGAAT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 64 0.97
44 2 0.03
ACGTcount: A:0.34, C:0.30, G:0.20, T:0.15
Consensus pattern (43 bp):
AAGCCTGCTAGGAACGAAGGCCCGAATACACATCACCAGCACA
Found at i:49177852 original size:40 final size:40
Alignment explanation
Indices: 49177792--49177907 Score: 205
Period size: 40 Copynumber: 2.9 Consensus size: 40
49177782 CACATCACTG
* * *
49177792 GCACGAATGCCCTTCAGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
49177832 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
49177872 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAAC
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAAC
49177908 TCTCAATTCT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
Found at i:49184452 original size:15 final size:15
Alignment explanation
Indices: 49184432--49184461 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
49184422 TAGCTCATTT
49184432 ATAGTGGTATCAGAA
1 ATAGTGGTATCAGAA
*
49184447 ATAGTGGTTTCAGAA
1 ATAGTGGTATCAGAA
49184462 CCACAATTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (15 bp):
ATAGTGGTATCAGAA
Found at i:49185333 original size:7 final size:7
Alignment explanation
Indices: 49185313--49185348 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
49185303 AAGAAAATAC
49185313 TATGAAA
1 TATGAAA
49185320 -A-GAAA
1 TATGAAA
49185325 TATGAAA
1 TATGAAA
49185332 TATGAAA
1 TATGAAA
49185339 TATGAAA
1 TATGAAA
49185346 TAT
1 TAT
49185349 AATATAAAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 4 0.15
6 2 0.07
7 21 0.78
ACGTcount: A:0.58, C:0.00, G:0.14, T:0.28
Consensus pattern (7 bp):
TATGAAA
Found at i:49185372 original size:5 final size:5
Alignment explanation
Indices: 49185359--49185401 Score: 77
Period size: 5 Copynumber: 8.4 Consensus size: 5
49185349 AATATAAAGG
49185359 AATATA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AA
1 AATA-A AATAA AATAA AATAA AATAA AATAA AATAA AATAA AA
49185402 CAAACACTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 33 0.89
6 4 0.11
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:49188939 original size:14 final size:14
Alignment explanation
Indices: 49188920--49188949 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
49188910 CTCATCGAAT
49188920 TAATAGTTTCAAAA
1 TAATAGTTTCAAAA
*
49188934 TAATAGTTTTAAAA
1 TAATAGTTTCAAAA
49188948 TA
1 TA
49188950 CAAAATTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (14 bp):
TAATAGTTTCAAAA
Found at i:49201076 original size:68 final size:68
Alignment explanation
Indices: 49200909--49201084 Score: 166
Period size: 68 Copynumber: 2.6 Consensus size: 68
49200899 TAGTACCACT
* * * *
49200909 CATGCGACCTAGCTA-AT-T-TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAAT
*
49200971 CACG
65 CACA
* * *
49200975 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT
1 CATGCGACCTAGCTACATATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGA
49201037 ATCACA
63 ATCACA
* *
49201043 CATGTGACCTAGCTACTATATAGTATCTCGTAGCTTTCTTGT
1 CATGCGACCTAGCTAC-ATATA-TATCTCGTAGCTCTCTTGT
49201085 ACACATGATG
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
66 15 0.16
67 2 0.02
68 35 0.38
69 8 0.09
70 6 0.07
71 26 0.28
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATC
ACA
Found at i:49202978 original size:24 final size:23
Alignment explanation
Indices: 49202949--49203001 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 23
49202939 CTTATAATGG
* *
49202949 GAAGCTCACAAAGAGCCATATCGA
1 GAAGCTAACAAAAAGCC-TATCGA
* *
49202973 GAAGCTAATAAAAAGCCTATCGC
1 GAAGCTAACAAAAAGCCTATCGA
49202996 GAAGCT
1 GAAGCT
49203002 TATCCAGGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.15
Consensus pattern (23 bp):
GAAGCTAACAAAAAGCCTATCGA
Found at i:49203047 original size:24 final size:24
Alignment explanation
Indices: 49203014--49203092 Score: 72
Period size: 24 Copynumber: 3.2 Consensus size: 24
49203004 TCCAGGCTAT
49203014 ATAA-CGGGAAGCTCATAAGAGCC
1 ATAATCGGGAAGCTCATAAGAGCC
* * *
49203037 ATAATCGGGAAGTTCACAAAGAACC
1 ATAATCGGGAAGCTCA-TAAGAGCC
**
49203062 AT-ATTAGGAAGCTCATGAAGAGCC
1 ATAATCGGGAAGCTCAT-AAGAGCC
49203086 TATAATC
1 -ATAATC
49203093 ATGGTGCTTA
Statistics
Matches: 42, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
23 4 0.10
24 26 0.62
25 10 0.24
26 2 0.05
ACGTcount: A:0.41, C:0.19, G:0.22, T:0.19
Consensus pattern (24 bp):
ATAATCGGGAAGCTCATAAGAGCC
Found at i:49218880 original size:15 final size:15
Alignment explanation
Indices: 49218860--49218897 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
49218850 TTAATGACTT
49218860 CCTAGGGTCATCAAG
1 CCTAGGGTCATCAAG
49218875 CCTAGGGTCATCAAG
1 CCTAGGGTCATCAAG
49218890 CCTAGGGT
1 CCTAGGGT
49218898 TTGTGTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (15 bp):
CCTAGGGTCATCAAG
Found at i:49230882 original size:50 final size:49
Alignment explanation
Indices: 49230763--49230885 Score: 133
Period size: 49 Copynumber: 2.5 Consensus size: 49
49230753 GCTCATCCAT
* * * *
49230763 CAAGTCGATGCCATGTCCCAGATATGGTCTTACATTGACTATTGAAATC
1 CAAGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATTCAAATC
* *
49230812 GAAGCCGACGCCATGTCCCAGACATGGTCTTACACTAG-CT-TTCACATATC
1 CAAGCCGATGCCATGTCCCAGACATGGTCTTACA-TAGACTATTCA-A-ATC
* *
49230862 CATGCTGATGCCATGTCCCAGACA
1 CAAGCCGATGCCATGTCCCAGACA
49230886 CAGTTTTATA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
48 3 0.05
49 33 0.54
50 25 0.41
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (49 bp):
CAAGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATTCAAATC
Found at i:49230988 original size:47 final size:44
Alignment explanation
Indices: 49230929--49231049 Score: 118
Period size: 47 Copynumber: 2.6 Consensus size: 44
49230919 ATGTCCCAGA
* * *
49230929 CATGTCCTAGACATGTCTTTCACTAGCTCTCATCTCAATA-CCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT--T-ACAATAGCCGATG
* *
49230975 TCATGTCCCAGACATGGCCTTACACTGGCTCTTACAATATGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTTACAATA--GCCGATG
*
49231023 CATGTCACAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
49231050 ACACAATTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
45 5 0.08
46 12 0.19
47 26 0.42
48 19 0.31
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.29
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTTACAATAGCCGATG
Found at i:49233184 original size:52 final size:50
Alignment explanation
Indices: 49233102--49233235 Score: 164
Period size: 50 Copynumber: 2.6 Consensus size: 50
49233092 GTTGTGAGAA
* * *
49233102 CACATGTGTAGTACTATGTGCGGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-ACAGATTGTTAAGT
* *
49233154 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAACAGATTGTTAAGT
*
49233204 CGCATGTGTAGTACTAAGTGCAGGCTACTATG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATG
49233236 CGTACCCAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
48 3 0.04
49 3 0.04
50 36 0.49
52 31 0.42
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.33
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAACAGATTGTTAAGT
Found at i:49233349 original size:50 final size:50
Alignment explanation
Indices: 49233286--49233529 Score: 249
Period size: 50 Copynumber: 4.9 Consensus size: 50
49233276 ATCAGATGGT
**
49233286 TAGGTCACGTGTGTAGTACTAAGTGTAGGCTGTTATGTGTACCGGATTGA
1 TAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATTGA
* * ** ** * *
49233336 TAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCATACCCAATAGTT
1 TAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATTG-A
* * * * *
49233387 TCGATTACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCC-GATGGA
1 TAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTA-CCGGATTGA
* * *
49233437 TAAGTCACGTGTGTAGCACTAAGTGCAGGCTACTATGTGTA-CGAGATTGA
1 TAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCG-GATTGA
* * * *
49233487 TAGGTCGCATGTGTAGTACTAAGTGTAGGCTCCTATGCGTACC
1 TAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACC
49233530 AGAGGGCTTC
Statistics
Matches: 153, Mismatches: 36, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
48 1 0.01
50 113 0.74
51 37 0.24
52 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (50 bp):
TAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATTGA
Found at i:49233397 original size:137 final size:145
Alignment explanation
Indices: 49233148--49233529 Score: 512
Period size: 137 Copynumber: 2.6 Consensus size: 145
49233138 TAAGACAGTT
* * *
49233148 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAAGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGATAGGTCGCATGTGT
*
49233213 AGTACTAAGTGCAGGCTACTATGCGTACCCAATAGTTTCGATCAC-GTGT-G-T-A-GTA-CTAC
66 AGTACTAAGTGTAGGCTACTATGCGTACCCAATAGTTTCGATCACGGTGTAGATAAGGTAGCTAC
49233272 -A-TGTATCAGATGG
131 TACTGTATCAGATGG
* **
49233285 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTGTTATGTGTACCGGATTGATAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGATAGGTCGCATGTGT
* *
49233350 AGTACTAAGTGTAGGCTACTATGCATACCCAATAGTTTCGATTACGTGTGTAGTACTAAGTGTAG
66 AGTACTAAGTGTAGGCTACTATGCGTACCCAATAGTTTCGATCACG-GTGTAG-A-TAAG-GTA-
*
49233415 GCTACTACGTGTATCCGATGG
126 GCTACTAC-TGTATCAGATGG
* * *
49233436 ATAAGTCACGTGTGTAGCACTAAGTGCAGGCTACTATGTGTA-CGAGATTGATAGGTCGCATGTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCG-GATTGATAGGTCGCATGTG
*
49233500 TAGTACTAAGTGTAGGCTCCTATGCGTACC
65 TAGTACTAAGTGTAGGCTACTATGCGTACC
49233530 AGAGGGCTTC
Statistics
Matches: 212, Mismatches: 18, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
137 101 0.48
139 4 0.02
140 1 0.00
143 1 0.00
144 1 0.00
146 3 0.01
148 4 0.02
149 1 0.00
150 2 0.01
151 94 0.44
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (145 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGATAGGTCGCATGTGT
AGTACTAAGTGTAGGCTACTATGCGTACCCAATAGTTTCGATCACGGTGTAGATAAGGTAGCTAC
TACTGTATCAGATGG
Found at i:49233467 original size:101 final size:101
Alignment explanation
Indices: 49233292--49233473 Score: 267
Period size: 101 Copynumber: 1.8 Consensus size: 101
49233282 TGGTTAGGTC
** * * * * *
49233292 ACGTGTGTAGTACTAAGTGTAGGCTGTTATGTGTACCGGATTGATAGGTCGCATGTGTAGTACTA
1 ACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATGGATAAGTCACATGTGTAGCACTA
*
49233357 AGTGTAGGCTACTATGCATACCCAATAGTTTCGATT
66 AGTGCAGGCTACTATGCATACCCAATAGTTTCGATT
*
49233393 ACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCC-GATGGATAAGTCACGTGTGTAGCACT
1 ACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTA-CCGGATGGATAAGTCACATGTGTAGCACT
49233457 AAGTGCAGGCTACTATG
65 AAGTGCAGGCTACTATG
49233474 TGTACGAGAT
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 69 0.97
102 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (101 bp):
ACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATGGATAAGTCACATGTGTAGCACTA
AGTGCAGGCTACTATGCATACCCAATAGTTTCGATT
Found at i:49233753 original size:16 final size:16
Alignment explanation
Indices: 49233732--49233763 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
49233722 AGAATGGAGT
49233732 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
49233748 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
49233764 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:49239065 original size:27 final size:27
Alignment explanation
Indices: 49239027--49239109 Score: 98
Period size: 28 Copynumber: 3.1 Consensus size: 27
49239017 GTCACTAGAT
*
49239027 ACAGATA-ATGTGGCAGAGCCACCAGA
1 ACAGATATTTGTGGCAGAGCCACCAGA
*
49239053 ACAGATATTTGTGGC-GTAGCCACCAAAA
1 ACAGATATTTGTGGCAG-AGCCACC-AGA
* *
49239081 ACAGATATTTGTGGCATAACCACCAGA
1 ACAGATATTTGTGGCAGAGCCACCAGA
49239108 AC
1 AC
49239110 TCTTCCTCCA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
26 8 0.17
27 17 0.35
28 23 0.48
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGAGCCACCAGA
Found at i:49239269 original size:27 final size:26
Alignment explanation
Indices: 49239211--49239274 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
49239201 CAAAATTAAC
* *
49239211 CCTAGGGGTATAATGGTCATTTTGCA
1 CCTAGGGGTATAATGGTAATTTTACA
* *
49239237 CCTAGGGGTATGATGGTAATTTTTATA
1 CCTAGGGGTATAATGGTAA-TTTTACA
*
49239264 CTTAGGGGTAT
1 CCTAGGGGTAT
49239275 TTTAGTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 17 0.53
27 15 0.47
ACGTcount: A:0.23, C:0.11, G:0.28, T:0.38
Consensus pattern (26 bp):
CCTAGGGGTATAATGGTAATTTTACA
Found at i:49243025 original size:18 final size:20
Alignment explanation
Indices: 49242989--49243035 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
49242979 AGTTTTGAGT
49242989 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
49243009 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
49243028 ATGATATA
1 AT-ATATA
49243036 ACATATTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:49243599 original size:101 final size:101
Alignment explanation
Indices: 49243424--49243655 Score: 263
Period size: 101 Copynumber: 2.3 Consensus size: 101
49243414 CAATTTTAGG
* * ** *
49243424 TCACGTGTGTAGTACTAAGTGCAGGCTACTAATTGTACCAGATTGTTAGGTTGCATGTGTGGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTAATTGTACCAAATGGTTAGGTCACATGTGTAGTAC
49243489 TAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGA
* * * * *
49243525 TCACGTGTGTAGTAGTAAGTGTAGGCTATTACA-TGTATCAAATGGTTAGGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA-ATTGTACCAAATGGTTAGGTCACATGTGTAGTA
* * * * * *
49243589 CTAAGTGCAGGCTACTA-CCTGTACCGGATTG-ATAGG
65 CTAAGTGCAGGCTACTATGC-GTACCCGATAGTTTCGA
* *
49243625 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
49243656 TGCGTACCCG
Statistics
Matches: 108, Mismatches: 21, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
100 29 0.27
101 78 0.72
102 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTAATTGTACCAAATGGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGA
Found at i:49243663 original size:50 final size:50
Alignment explanation
Indices: 49243419--49243663 Score: 242
Period size: 50 Copynumber: 4.9 Consensus size: 50
49243409 TAAGACAATT
*
49243419 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAAT-TGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACT-ATGCGTACCAGATTG
** * * * *
49243469 TTAGGTTGCATGTGTGGTACTAAGTGCAGGCTACTATGCGTACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTG
* * * * * *** * * *
49243519 TTTCGATCACGTGTGTAGTAGTAAGTGTAGGCTATTACATGTATCAAATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTG
* *
49243570 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA-CCTGTACCGGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGC-GTACCAGATTG
* * *
49243620 ATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
49243664 CGATAGTTTT
Statistics
Matches: 153, Mismatches: 38, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
49 2 0.01
50 116 0.76
51 35 0.23
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTG
Found at i:49244038 original size:13 final size:13
Alignment explanation
Indices: 49244020--49244057 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
49244010 GTAATCACGT
*
49244020 CACACGACCGTGG
1 CACACGAGCGTGG
*
49244033 CACACGGGCGTGG
1 CACACGAGCGTGG
49244046 CACACGAGCGTG
1 CACACGAGCGTG
49244058 TCTCTTTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.21, C:0.34, G:0.37, T:0.08
Consensus pattern (13 bp):
CACACGAGCGTGG
Found at i:49249501 original size:27 final size:26
Alignment explanation
Indices: 49249424--49249532 Score: 103
Period size: 27 Copynumber: 4.0 Consensus size: 26
49249414 AGCATGGCTG
* *
49249424 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
49249450 CTAGATACAAATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
49249478 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
49249505 CCA-AATCAGATAATTTGTGGCATAGCCA
1 CCAGAA-CAGATAA--TGTGGCAGAGCCA
49249533 ACAGGACGCT
Statistics
Matches: 68, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
26 7 0.10
27 34 0.50
28 27 0.40
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:49252933 original size:40 final size:40
Alignment explanation
Indices: 49252888--49253079 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
49252878 ATAACCACAA
* * *
49252888 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
49252928 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
49252968 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
49253008 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
49253048 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
49253080 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:49252972 original size:80 final size:80
Alignment explanation
Indices: 49252859--49253078 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
49252849 ACCCAAGTTT
* * * * * * * * *
49252859 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
49252922 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
49252938 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
49253002 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
49253018 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
49253079 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:49261059 original size:40 final size:40
Alignment explanation
Indices: 49261014--49261205 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
49261004 ATAACCACAA
* * *
49261014 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
49261054 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
49261094 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
49261134 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
49261174 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
49261206 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:49261098 original size:80 final size:80
Alignment explanation
Indices: 49260985--49261204 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
49260975 ACCCAAGTTT
* * * * * * * * *
49260985 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
49261048 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
49261064 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
49261128 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
49261144 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
49261205 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:49263045 original size:5 final size:5
Alignment explanation
Indices: 49263035--49263137 Score: 93
Period size: 5 Copynumber: 19.2 Consensus size: 5
49263025 TGAATCCTCC
49263035 TATTT TATTT TATTT TA-TT TATTCT TATTTT TATTT TA-TT TATTT TATTTT
1 TATTT TATTT TATTT TATTT TATT-T TA-TTT TATTT TATTT TATTT TA-TTT
* *
49263086 TATTTT TCTTT TGATTTT TATTT TCATTT CAATTT TATTAT TATTT TATTT
1 TA-TTT TATTT T-A-TTT TATTT T-ATTT -TATTT TATT-T TATTT TATTT
49263137 T
1 T
49263138 GAAAGACATA
Statistics
Matches: 84, Mismatches: 4, Indels: 20
0.78 0.04 0.19
Matches are distributed among these distances:
4 8 0.10
5 40 0.48
6 30 0.36
7 6 0.07
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (5 bp):
TATTT
Found at i:49263082 original size:35 final size:37
Alignment explanation
Indices: 49263038--49263132 Score: 115
Period size: 41 Copynumber: 2.5 Consensus size: 37
49263028 ATCCTCCTAT
49263038 TTTATTTTATTTTATTTATTC-TT-ATTTTTATTTT-A
1 TTTATTTTATTTTATTT-TTCTTTGATTTTTATTTTCA
49263073 TTTATTTTATTTTTATTTTTCTTTTGATTTTTATTTTCA
1 TTTATTTTA-TTTTATTTTTC-TTTGATTTTTATTTTCA
49263112 TTTCAATTTTATTATTATTTT
1 TTT--ATTTTATT-TTATTTT
49263133 ATTTTGAAAG
Statistics
Matches: 52, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
35 12 0.23
36 8 0.15
37 2 0.04
38 11 0.21
39 4 0.08
40 2 0.04
41 13 0.25
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (37 bp):
TTTATTTTATTTTATTTTTCTTTGATTTTTATTTTCA
Found at i:49263104 original size:7 final size:6
Alignment explanation
Indices: 49263037--49263137 Score: 71
Period size: 6 Copynumber: 16.5 Consensus size: 6
49263027 AATCCTCCTA
* * *
49263037 TTTTAT TTTATTT TATTTAT TCTTAT TTTTAT TTTATTT ATTTTAT TTTTAT
1 TTTTAT TTT-TAT T-TTTAT TTTTAT TTTTAT TTT-TAT -TTTTAT TTTTAT
* * * * * *
49263089 TTTTCT TTTGAT TTTTAT TTTCA- TTTCAA TTTTAT TATTA- TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
49263135 TTT
1 TTT
49263138 GAAAGACATA
Statistics
Matches: 74, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
5 9 0.12
6 50 0.68
7 10 0.14
8 5 0.07
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:49266284 original size:50 final size:50
Alignment explanation
Indices: 49266204--49266332 Score: 177
Period size: 50 Copynumber: 2.6 Consensus size: 50
49266194 CACGCGATCA
* *
49266204 ACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGATAAGTC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTC
* * **
49266254 ACGTGTGTAGTACTAAGTGCAGGCTTCTACGTGTACCAGATTGATTGGTC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTC
* * *
49266304 GCATGCGTAGTACTAAGTGCAGGCTACTA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTA
49266333 TGCATACCAG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 69 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (50 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTC
Found at i:49266564 original size:16 final size:16
Alignment explanation
Indices: 49266543--49266573 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49266533 AGAATGGAGT
49266543 AAGTGAAATTATGTAG
1 AAGTGAAATTATGTAG
*
49266559 AAGTGAAATTTTGTA
1 AAGTGAAATTATGTA
49266574 ATAAAACAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
AAGTGAAATTATGTAG
Found at i:49273433 original size:56 final size:56
Alignment explanation
Indices: 49273341--49273491 Score: 194
Period size: 56 Copynumber: 2.7 Consensus size: 56
49273331 GAAGTATGTG
* * * * *
49273341 GCATCGATATGCGACTCCTATATATATGTACGAGTAAGTCCACGTTTAATACGTTA
1 GCATCGATATGTGACTCCAATATATATGTACAAGTAAGACCACGTTTAATACATTA
* * * *
49273397 GCATCGATATGTGACTCCGATATATGTGTGCAAGTAAGACCACGTTTAATACATTG
1 GCATCGATATGTGACTCCAATATATATGTACAAGTAAGACCACGTTTAATACATTA
* * *
49273453 GCATCAATATATGACTCCAATATATATGTACGAGTAAGA
1 GCATCGATATGTGACTCCAATATATATGTACAAGTAAGA
49273492 TGATATGTGA
Statistics
Matches: 81, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 81 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (56 bp):
GCATCGATATGTGACTCCAATATATATGTACAAGTAAGACCACGTTTAATACATTA
Found at i:49275726 original size:25 final size:24
Alignment explanation
Indices: 49275688--49275755 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 24
49275678 CTCTTTTAAT
*
49275688 AACT-GGGCAAAGCCCTTTTTGATA
1 AACTGGGGC-AAGCCCTTTTCGATA
*
49275712 AACTGGGGCATAGCCCTTTTCGGTA
1 AACTGGGGCA-AGCCCTTTTCGATA
*
49275737 AACTGGGGCAAACCCTTTT
1 AACTGGGGCAAGCCCTTTT
49275756 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
24 13 0.33
25 26 0.67
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.28
Consensus pattern (24 bp):
AACTGGGGCAAGCCCTTTTCGATA
Found at i:49275731 original size:24 final size:24
Alignment explanation
Indices: 49275674--49275755 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 24
49275664 ACTGGAGCCC
*
49275674 TAGCCTCTTTTAAT-AACT-GGGCA
1 TAGCC-CTTTTGATAAACTGGGGCA
*
49275697 AAGCCCTTTTTGATAAACTGGGGCA
1 TAGCCC-TTTTGATAAACTGGGGCA
*
49275722 TAGCCCTTTTCGGTAAACTGGGGCA
1 TAGCCCTTTT-GATAAACTGGGGCA
*
49275747 -AACCCTTTT
1 TAGCCCTTTT
49275756 AGCACTTCCT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
22 1 0.02
23 10 0.20
24 16 0.32
25 23 0.46
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (24 bp):
TAGCCCTTTTGATAAACTGGGGCA
Found at i:49276126 original size:27 final size:27
Alignment explanation
Indices: 49275961--49276182 Score: 214
Period size: 27 Copynumber: 8.2 Consensus size: 27
49275951 GGGCAAAATT
* * * * **
49275961 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
49275988 GTAATTCTACCCTACAGGGTTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTA
* * *
49276015 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTA
*
49276042 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
**
49276069 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTA
*
49276096 GTAATTCTACTCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* ** *
49276123 GTAATTTTA-CAAACCATGGGTATTTTA
1 GTAATTCTACCCTA-CAGGGGTATTTTA
* **
49276150 GTAATTTTA-CAAACTAGGGGTATTTTA
1 GTAATTCTACCCTAC-AGGGGTATTTTA
49276177 GTAATT
1 GTAATT
49276183 TTACTGATCG
Statistics
Matches: 166, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 2 0.01
27 164 0.99
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTA
Found at i:49276144 original size:54 final size:54
Alignment explanation
Indices: 49275961--49276186 Score: 251
Period size: 54 Copynumber: 4.2 Consensus size: 54
49275951 GGGCAAAATT
* * * * *
49275961 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGTTATTTTG
1 GTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTA
*
49276015 GT-ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTT-TACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTA
* * * *
49276069 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACTCTACAGGGGTATTTTA
1 GTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTA
** * * * **
49276123 GTAATTTTA-CAAACCATGGGTATTTTAGTAATTTTA-CAAACTAGGGGTATTTTA
1 GTAATTTTACCCTA-CAAGGGTATTTCAGTAATTCTACCCTAC-AGGGGTATTTTA
49276177 GTAATTTTAC
1 GTAATTTTAC
49276187 TGATCGAGGG
Statistics
Matches: 146, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
53 8 0.05
54 135 0.92
55 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (54 bp):
GTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTA
Found at i:49276144 original size:81 final size:81
Alignment explanation
Indices: 49275988--49276236 Score: 240
Period size: 81 Copynumber: 3.1 Consensus size: 81
49275978 GGGTATCTCG
* * * * * *
49275988 GTAATTCTACCCTACAGGGTTATTTTGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTAC-
1 GTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACTCTACAGGGGTATTTTAGTAATTTTACA
49276052 --CCTATAGGGGTATTTTA
66 AACC-AT--GGGTATTTTA
*
49276069 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACTCTACAGGGGTATTTTAGTAATTTTACA
1 GTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACTCTACAGGGGTATTTTAGTAATTTTACA
49276134 AACCATGGGTATTTTA
66 AACCATGGGTATTTTA
* ** * * * * *
49276150 GTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACT-GATC-GAGGGTATTTTGGTACTTTT
1 GTAATTCTACCCTAC-AGGGGTATTTTGGTAATTCTACTCTA-CAG-GGGTATTTTAGTAATTTT
** *
49276212 GTAAACCAAGGGTATTTTA
63 ACAAACCATGGGTATTTTA
49276231 GTAATT
1 GTAATT
49276237 TTGTAATTGA
Statistics
Matches: 143, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
80 5 0.03
81 134 0.94
83 2 0.01
84 2 0.01
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACTCTACAGGGGTATTTTAGTAATTTTACA
AACCATGGGTATTTTA
Found at i:49276183 original size:27 final size:27
Alignment explanation
Indices: 49276056--49276238 Score: 147
Period size: 27 Copynumber: 6.8 Consensus size: 27
49276046 TTCTACCCTA
* **
49276056 TAGGGGTATTTTAGTAATTCTACCCTAC
1 TAGGGGTATTTTAGTAATTTTA-CAAAC
** * **
49276084 -AGGGGTATTTCGGTAATTCTACTCTAC
1 TAGGGGTATTTTAGTAATTTTAC-AAAC
49276111 -AGGGGTATTTTAGTAATTTTACAAAC
1 TAGGGGTATTTTAGTAATTTTACAAAC
* *
49276137 CATGGGTATTTTAGTAATTTTACAAAC
1 TAGGGGTATTTTAGTAATTTTACAAAC
**
49276164 TAGGGGTATTTTAGTAATTTTACTGA-
1 TAGGGGTATTTTAGTAATTTTACAAAC
* * * **
49276190 TCGAGGGTATTTTGGTACTTTTGTAAAC
1 TAG-GGGTATTTTAGTAATTTTACAAAC
* *
49276218 CAAGGGTATTTTAGTAATTTT
1 TAGGGGTATTTTAGTAATTTT
49276239 GTAATTGAGG
Statistics
Matches: 127, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
26 5 0.04
27 122 0.96
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.42
Consensus pattern (27 bp):
TAGGGGTATTTTAGTAATTTTACAAAC
Found at i:49276277 original size:27 final size:27
Alignment explanation
Indices: 49276245--49276413 Score: 212
Period size: 27 Copynumber: 6.3 Consensus size: 27
49276235 TTTTGTAATT
*
49276245 GAGGGTAAAACGATAATTCTATAAATC
1 GAGGGTAAAATGATAATTCTATAAATC
49276272 GAGGGTAAAATGATAATTCTATAAATC
1 GAGGGTAAAATGATAATTCTATAAATC
* *
49276299 GAGGGTAAAATGGTAATTCTATAAATT
1 GAGGGTAAAATGATAATTCTATAAATC
* * *
49276326 GAAGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAATGATAATTCTATAAATC
*
49276353 GAGGGTAAAACGATAATTCTATAAATC
1 GAGGGTAAAATGATAATTCTATAAATC
* *** * * *
49276380 GGGGGTACTTTGATAATTTTACAAGTC
1 GAGGGTAAAATGATAATTCTATAAATC
49276407 GAGGGTA
1 GAGGGTA
49276414 TTTCAGTAAT
Statistics
Matches: 123, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GAGGGTAAAATGATAATTCTATAAATC
Found at i:49276423 original size:27 final size:27
Alignment explanation
Indices: 49276393--49276561 Score: 166
Period size: 27 Copynumber: 6.3 Consensus size: 27
49276383 GGTACTTTGA
49276393 TAATTTTACAAGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAG
* * *
49276420 TAATTTTACAA-TCGACGATATTT-TG
1 TAATTTTACAAGTCGAGGGTATTTCAG
* * * *
49276445 ATAATTTTATAAATCGGGGGTACTTT-GG
1 -TAATTTTACAAGTCGAGGGTA-TTTCAG
** * *
49276473 TAATTTTACAAGTTAAAGGTATTTTAG
1 TAATTTTACAAGTCGAGGGTATTTCAG
*
49276500 TAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAG
*
49276527 TAATTTTACAAG-CTGAGGGTATTTCGG
1 TAATTTTACAAGTC-GAGGGTATTTCAG
49276554 TAATTTTA
1 TAATTTTA
49276562 GTAAACTAAA
Statistics
Matches: 115, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
25 1 0.01
26 24 0.21
27 86 0.75
28 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAG
Found at i:49276423 original size:81 final size:80
Alignment explanation
Indices: 49276258--49276520 Score: 260
Period size: 81 Copynumber: 3.3 Consensus size: 80
49276248 GGTAAAACGA
* *** * *
49276258 TAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAA
1 TAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAA
* ** *
49276323 ATTGAAGGTAAAATGG
66 GTTGAAGGT-ATTTAG
* * *
49276339 TAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGGGGGTACTTTGATAATTTTACAA
1 TAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAA
* *
49276404 GTCGAGGGTATTTCAG
66 GTTGAAGGTATTT-AG
* * *** *
49276420 TAATT-T-TACAATCGACGATATTTTGATAATTTTATAAATCGGGGGTACTTTGGTAATTTTACA
1 TAATTCTATA-AATCGAGGGTAAAATGATAATTCTATAAATCGGGGGTACTTTGGTAATTTTACA
*
49276483 AGTTAAAGGTATTTTAG
65 AGTTGAAGGTA-TTTAG
* *
49276500 TAATTTTACAAATCGAGGGTA
1 TAATTCTATAAATCGAGGGTA
49276521 TTTCAGTAAT
Statistics
Matches: 148, Mismatches: 29, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
79 2 0.01
80 64 0.43
81 81 0.55
82 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (80 bp):
TAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAA
GTTGAAGGTATTTAG
Found at i:49276461 original size:80 final size:81
Alignment explanation
Indices: 49276364--49276515 Score: 243
Period size: 80 Copynumber: 1.9 Consensus size: 81
49276354 AGGGTAAAAC
* *
49276364 GATAATTCTATAAATCGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTAC
1 GATAATTCTATAAATCGGGGGTACTTTGATAATTTTACAAGTCAAAGGTATTTCAGTAATTTTAC
49276429 -AATCGACGATATTTT
66 AAATCGACGATATTTT
* * * *
49276444 GATAATTTTATAAATCGGGGGTACTTTGGTAATTTTACAAGTTAAAGGTATTTTAGTAATTTTAC
1 GATAATTCTATAAATCGGGGGTACTTTGATAATTTTACAAGTCAAAGGTATTTCAGTAATTTTAC
49276509 AAATCGA
66 AAATCGA
49276516 GGGTATTTCA
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
80 59 0.91
81 6 0.09
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.39
Consensus pattern (81 bp):
GATAATTCTATAAATCGGGGGTACTTTGATAATTTTACAAGTCAAAGGTATTTCAGTAATTTTAC
AAATCGACGATATTTT
Found at i:49276532 original size:54 final size:53
Alignment explanation
Indices: 49276383--49276561 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 53
49276373 ATAAATCGGG
* * * *
49276383 GGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAA-TCGAC
1 GGTATTTTG-TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAGTTGAA
* * * * *
49276436 GATATTTTGATAATTTTATAAATCGGGGGTACTTT-GGTAATTTTACAAGTTAAA
1 GGTATTTTG-TAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTACAAGTTGAA
* *
49276490 GGTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAGCTGAG
1 GGTATTTT-GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAGTTGAA
*
49276544 GGTATTTCGGTAATTTTA
1 GGTATTT-TGTAATTTTA
49276562 GTAAACTAAA
Statistics
Matches: 104, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
53 41 0.39
54 62 0.60
55 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (53 bp):
GGTATTTTGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAGTTGAA
Found at i:49288687 original size:40 final size:40
Alignment explanation
Indices: 49288632--49288746 Score: 178
Period size: 40 Copynumber: 2.9 Consensus size: 40
49288622 GAATATAGCT
* *
49288632 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAGAGTA
* *
49288672 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTAGAGTA
49288712 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA
49288747 TCATCCAAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
39 2 0.03
40 64 0.94
41 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAGAGTA
Found at i:49291436 original size:10 final size:10
Alignment explanation
Indices: 49291421--49291445 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
49291411 CTGTTACAAG
49291421 TTCTAATTAT
1 TTCTAATTAT
49291431 TTCTAATTAT
1 TTCTAATTAT
49291441 TTCTA
1 TTCTA
49291446 CACGACCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.60
Consensus pattern (10 bp):
TTCTAATTAT
Found at i:49292733 original size:46 final size:46
Alignment explanation
Indices: 49292623--49292935 Score: 342
Period size: 46 Copynumber: 6.6 Consensus size: 46
49292613 TTTGACATGA
* * *
49292623 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTC-TTTTCATGTCACGT
49292673 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
* * * *
49292719 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTC-TTTTCATGTCACGT
* *
49292769 TTCCATGGTATATTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
* ** * * *
49292815 TGCCATGGTATCTTTCAACCATGGTCATACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
** * * *
49292861 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
49292907 TGCCATGGTATCTTTCAACCATGGTCTTA
1 TGCCATGGTATCTTTCAACCATGGTCTTA
49292936 CACATTTCAT
Statistics
Matches: 234, Mismatches: 22, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
45 10 0.04
46 158 0.68
47 3 0.01
49 3 0.01
50 55 0.24
51 5 0.02
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
Done.