Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 151 of 352
Found at i:49534930 original size:54 final size:56
Alignment explanation
Indices: 49534866--49535012 Score: 183
Period size: 54 Copynumber: 2.7 Consensus size: 56
49534856 TTGGTAAGAT
* *
49534866 AAGGATATCATGCAAGACCATGCCAAGGCATGGCATTGAAAAGTT-CTATAAGG-A
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTACTATAAGGCA
* * **
49534920 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTACTATAAGGCA
*** *
49534976 AAGG-CCCCATGTAAGACCATGCTAAGGCATGGCATTG
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTG
49535013 GTGAGTTCAT
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
54 39 0.49
55 35 0.44
56 5 0.06
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (56 bp):
AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGAAAAGTTACTATAAGGCA
Found at i:49534994 original size:55 final size:55
Alignment explanation
Indices: 49534874--49535062 Score: 208
Period size: 55 Copynumber: 3.5 Consensus size: 55
49534864 ATAAGGATAT
* * * ** *
49534874 CATGCAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGG-AAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGAAAC
**
49534928 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-CCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGCAAAGGAAAC
* * *
49534983 CATGTAAGACCATG-CTAAGGCATGGCATTGGTGAGTTC-ATAAGGC-AAGGATAC
1 CATGTAAGACCATGTC-AAGACATGGCATTGATGAGTTCTATAAGGCAAAGGAAAC
**
49535036 CACATAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGTCAAGACATGGCA
49535063 ATGGTAAGTT
Statistics
Matches: 115, Mismatches: 15, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
52 4 0.03
53 30 0.26
54 35 0.30
55 41 0.36
56 5 0.04
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (55 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGAAAC
Found at i:49537726 original size:26 final size:26
Alignment explanation
Indices: 49537704--49537760 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
49537694 GTCATGATTG
49537704 GTAAGCTCCTCCTAAGCTAATGAACA
1 GTAAGCTCCTCCTAAGCTAATGAACA
*
49537730 GTAAGCTCCTCCTGAGCTAATGAACA
1 GTAAGCTCCTCCTAAGCTAATGAACA
49537756 GTAAG
1 GTAAG
49537761 TTCCACTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (26 bp):
GTAAGCTCCTCCTAAGCTAATGAACA
Found at i:49537826 original size:26 final size:25
Alignment explanation
Indices: 49537797--49537891 Score: 81
Period size: 26 Copynumber: 3.9 Consensus size: 25
49537787 TATCGAGCTG
49537797 AATAGTAAGCTCATACGAGCTGAAA
1 AATAGTAAGCTCATACGAGCTGAAA
* *
49537822 CA-A-TAAGCTCCA-ATGAGCTG-AA
1 AATAGTAAGCT-CATACGAGCTGAAA
* * *
49537844 AATAGTAAGCTCTTACGAGTTGATAT
1 AATAGTAAGCTCATACGAGCTGA-AA
* *
49537870 ATTGGTAAGCTCATACGAGCTG
1 AATAGTAAGCTCATACGAGCTG
49537892 TGGTGAGTCC
Statistics
Matches: 53, Mismatches: 11, Indels: 11
0.71 0.15 0.15
Matches are distributed among these distances:
22 3 0.06
23 15 0.28
24 15 0.28
25 1 0.02
26 19 0.36
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (25 bp):
AATAGTAAGCTCATACGAGCTGAAA
Found at i:49540365 original size:42 final size:42
Alignment explanation
Indices: 49540247--49540367 Score: 111
Period size: 42 Copynumber: 2.9 Consensus size: 42
49540237 TACCATTCCA
* * * ** *
49540247 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCAAATCCCAGACATGGTCTTACACGAAATCTCATACCG
* * *
49540289 ATG-CAATAGCCCAG-CTATGGTCATACACAAAATCTCATACCG
1 ATGCCAA-ATCCCAGAC-ATGGTCTTACACGAAATCTCATACCG
* *
49540331 ATGCCAAATCCCAGACATAGTCTTACACGTAATCTCA
1 ATGCCAAATCCCAGACATGGTCTTACACGAAATCTCA
49540368 ACTAACCCTA
Statistics
Matches: 61, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
41 2 0.03
42 55 0.90
43 4 0.07
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (42 bp):
ATGCCAAATCCCAGACATGGTCTTACACGAAATCTCATACCG
Found at i:49541736 original size:53 final size:54
Alignment explanation
Indices: 49541674--49541779 Score: 169
Period size: 53 Copynumber: 2.0 Consensus size: 54
49541664 TAATAATCCT
*
49541674 ATAAAACATGGGAAAGAAATGGGGTATGCTA-ATAGCTTAGTAAACCTGCATGC
1 ATAAAACATGGGAAAGAAATGGGGTAAGCTATATAGCTTAGTAAACCTGCATGC
* **
49541727 ATAAAACATGGGAAAGATATGGGGTAAGCTATATAGCTTAGTAAGTCTGCATG
1 ATAAAACATGGGAAAGAAATGGGGTAAGCTATATAGCTTAGTAAACCTGCATG
49541780 AAAATAATAA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
53 29 0.60
54 19 0.40
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.25
Consensus pattern (54 bp):
ATAAAACATGGGAAAGAAATGGGGTAAGCTATATAGCTTAGTAAACCTGCATGC
Found at i:49542579 original size:42 final size:41
Alignment explanation
Indices: 49542467--49542630 Score: 170
Period size: 42 Copynumber: 3.9 Consensus size: 41
49542457 TACCGTACCA
* *
49542467 ATGCCATAT-CTCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCT-AGATATGGTCTTACACG-AATCTCATATCG
* * *
49542509 ATGCTAATAGCAC-AGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGC-CATATC-CTAGATATGGTCTTACACGAA-TCTCATATCG
*
49542552 ATGCCATATCCTAGATATGGTCTTACACGAAATCTCATATAG
1 ATGCCATATCCTAGATATGGTCTTACACG-AATCTCATATCG
* * *
49542594 ATGCCATATCCCAGATATAGTCTTACATGTAATCTCA
1 ATGCCATATCCTAGATATGGTCTTACACG-AATCTCA
49542631 GTAACCCTAA
Statistics
Matches: 103, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 68 0.66
43 33 0.32
45 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCTAGATATGGTCTTACACGAATCTCATATCG
Found at i:49543573 original size:24 final size:24
Alignment explanation
Indices: 49543544--49543699 Score: 161
Period size: 24 Copynumber: 6.2 Consensus size: 24
49543534 AACCAAAATG
49543544 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATCAGTAAC
*
49543568 AAAATCAGAATCAGAATCAATATTAGTAAC
1 AGAATCAGAATCAGAATC------AGTAAC
* *
49543598 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCA-GTAAC
49543623 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATCAGTAAC
* * **
49543647 AGAATCAGAATAAGAATCAATATT
1 AGAATCAGAATCAGAATCAGTAAC
*
49543671 AGAAACAGAATCAGAATCAG-AATC
1 AGAATCAGAATCAGAATCAGTAA-C
49543695 AGAAT
1 AGAAT
49543700 TACGTGACAG
Statistics
Matches: 108, Mismatches: 16, Indels: 16
0.77 0.11 0.11
Matches are distributed among these distances:
23 1 0.01
24 63 0.58
25 22 0.20
30 22 0.20
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.19
Consensus pattern (24 bp):
AGAATCAGAATCAGAATCAGTAAC
Found at i:49543596 original size:30 final size:29
Alignment explanation
Indices: 49543544--49543718 Score: 172
Period size: 30 Copynumber: 6.2 Consensus size: 29
49543534 AACCAAAATG
* *
49543544 AGAATCAGAATCAGAATCAGTAACAAAATC
1 AGAATCAGAATCA-AATTAGTAACAGAATC
49543574 AGAATCAGAATCAATATTAGTAACAGAATC
1 AGAATCAGAATCAA-ATTAGTAACAGAATC
*
49543604 AGAATCAG-----AATTAGGTGACAGAATC
1 AGAATCAGAATCAAATTA-GTAACAGAATC
49543629 AGAATCAGAATC-----AGTAACAGAATC
1 AGAATCAGAATCAAATTAGTAACAGAATC
* *
49543653 AGAATAAGAATCAATATTAGAAACAGAATC
1 AGAATCAGAATCAA-ATTAGTAACAGAATC
*
49543683 AGAATCAGAATCAGAATTACGTGACAGAATC
1 AGAATCAGAATCA-AATTA-GTAACAGAATC
49543714 AGAAT
1 AGAAT
49543719 GTGAATGCAA
Statistics
Matches: 122, Mismatches: 9, Indels: 27
0.77 0.06 0.17
Matches are distributed among these distances:
24 25 0.20
25 20 0.16
29 1 0.01
30 61 0.50
31 15 0.12
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (29 bp):
AGAATCAGAATCAAATTAGTAACAGAATC
Found at i:49543637 original size:79 final size:79
Alignment explanation
Indices: 49543544--49543693 Score: 273
Period size: 79 Copynumber: 1.9 Consensus size: 79
49543534 AACCAAAATG
* *
49543544 AGAATCAGAATCAGAATCAGTAACAAAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAAAATCAGAATAAGAATCAATATTAGAAACAGAATCAGAAT
49543609 CAGAATTAGGTGAC
66 CAGAATTAGGTGAC
*
49543623 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATAAGAATCAATATTAGAAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAAAATCAGAATAAGAATCAATATTAGAAACAGAATCAGAAT
49543688 CAGAAT
66 CAGAAT
49543694 CAGAATTACG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 68 1.00
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.19
Consensus pattern (79 bp):
AGAATCAGAATCAGAATCAGTAACAAAATCAGAATAAGAATCAATATTAGAAACAGAATCAGAAT
CAGAATTAGGTGAC
Found at i:49543718 original size:6 final size:6
Alignment explanation
Indices: 49543544--49543699 Score: 144
Period size: 6 Copynumber: 25.8 Consensus size: 6
49543534 AACCAAAATG
* *
49543544 AGAATC AGAATC AGAATC AGTAA-C AAAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
49543592 AGTAA-C AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * *
49543641 AGTAA-C AGAATC AGAATA AGAATC A-ATATT AGAAAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGA-ATC AGAATC AGAATC AGAATC
49543689 AGAATC AGAAT
1 AGAATC AGAAT
49543700 TACGTGACAG
Statistics
Matches: 123, Mismatches: 14, Indels: 26
0.75 0.09 0.16
Matches are distributed among these distances:
5 9 0.07
6 104 0.85
7 8 0.07
8 2 0.02
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:49543873 original size:27 final size:26
Alignment explanation
Indices: 49543836--49543901 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
49543826 AGCATGGCTG
*
49543836 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
49543862 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
49543889 CCAGAACCAGATA
1 CCAGAA-CAGATA
49543902 ATATGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:49543908 original size:27 final size:27
Alignment explanation
Indices: 49543854--49543909 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
49543844 GATATCGTGA
* * *
49543854 CAGAGTCACCAGATACAGATATTGTGG
1 CAGAGCCACCAGATACAGATAATATGG
49543881 CAGAGCCACCAGA-ACCAGATAATATGG
1 CAGAGCCACCAGATA-CAGATAATATGG
49543908 CA
1 CA
49543910 AACCCACCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CAGAGCCACCAGATACAGATAATATGG
Found at i:49543916 original size:27 final size:27
Alignment explanation
Indices: 49543860--49543917 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
49543850 GTGACAGAGT
* * * *
49543860 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATATGGCAAACC
49543887 CACCAGA-ACCAGATAATATGGCAAACC
1 CACCAGATA-CAGATAATATGGCAAACC
49543914 CACC
1 CACC
49543918 TAACAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.38, C:0.29, G:0.19, T:0.14
Consensus pattern (27 bp):
CACCAGATACAGATAATATGGCAAACC
Found at i:49544299 original size:27 final size:26
Alignment explanation
Indices: 49544220--49544302 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
49544210 TCGATCGATC
* * *
49544220 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
49544246 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
49544273 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
49544300 AAC
1 AAC
49544303 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:49544531 original size:27 final size:27
Alignment explanation
Indices: 49544501--49544696 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
49544491 GGGGCAAAAT
* * *
49544501 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
49544528 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
49544555 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
49544582 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
49544609 GGTAATTATATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
49544636 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
49544663 GAAAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
49544690 AGTAATT
1 GGTAATT
49544697 TCACAATCAA
Statistics
Matches: 142, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:49544747 original size:27 final size:27
Alignment explanation
Indices: 49544717--49545192 Score: 454
Period size: 27 Copynumber: 17.6 Consensus size: 27
49544707 GGGAAAATGG
49544717 TAATTCTGTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
49544744 TAATTTTGTAAA-CTGAGGGT-AAACCA
1 TAATTCTGTAAATC-GAGGGTAAAACGA
*
49544770 GTAATTCTGTAAATCAAGGGTAAAAC-A
1 -TAATTCTGTAAATCGAGGGTAAAACGA
* ** * *
49544797 GTAATTTTACAAATCGAGGGTAAAATGG
1 -TAATTCTGTAAATCGAGGGTAAAACGA
*
49544825 TAATTTTGTAAATCGAGGGTAAAAC-A
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
49544851 GTAATTCTGTAAA-CTGAGGGTAAAATGG
1 -TAATTCTGTAAATC-GAGGGTAAAACGA
* *
49544879 TAATTCTGTAAAACGAGGGTAAAA-TA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
49544905 GTAATTCTGTAAA-CTGAGGGTAAAATGG
1 -TAATTCTGTAAATC-GAGGGTAAAACGA
*
49544933 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
* ** *
49544960 TAATTTTACAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
49544987 TAATTCTATAAATCGAGGGTAAAACAA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
49545014 TAATTCTATAAATCGAGGGTAAAA-TA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
49545040 GTAATTCTATAAA-CTGAGGGTAAAACGG
1 -TAATTCTGTAAATC-GAGGGTAAAACGA
* *
49545068 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
49545095 TAATTCTGTAAA-CTGAGGGTAAAAC-A
1 TAATTCTGTAAATC-GAGGGTAAAACGA
*
49545121 GTAATTTTGTAAATCGAGGGTAAAAC-A
1 -TAATTCTGTAAATCGAGGGTAAAACGA
* ** * *
49545148 GTAATTTTAAAAATCAAGGGTAAAACGG
1 -TAATTCTGTAAATCGAGGGTAAAACGA
49545176 TAATTCTGTAAATCGAG
1 TAATTCTGTAAATCGAG
49545193 AGTACTTTGG
Statistics
Matches: 383, Mismatches: 45, Indels: 42
0.81 0.10 0.09
Matches are distributed among these distances:
26 11 0.03
27 363 0.95
28 9 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGA
Found at i:49544780 original size:54 final size:54
Alignment explanation
Indices: 49544701--49545192 Score: 554
Period size: 54 Copynumber: 9.1 Consensus size: 54
49544691 GTAATTTCAC
* *
49544701 AATCAAGGG-AAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
*** * * **
49544754 AA-CTGAGGGTAAACCAGTAATTCTGTAAATCAAGGGTAAAAC-AGTAATTTTACA
1 AATC-GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTA
*
49544808 AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTA
* *
49544862 AA-CTGAGGGTAAAATGGTAATTCTGTAAAACGAGGGTAAAA-TAGTAATTCTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTA
* * **
49544916 AA-CTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
1 AATC-GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
* * * *
49544970 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
* * *
49545024 AATCGAGGGTAAAATAGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTAAATC-GAGGGTAAAACGATAATTCTGTA
*
49545078 AATCGAGGGTAAAATGGTAATTCTGTAAA-CTGAGGGTAAAAC-AGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTAAATC-GAGGGTAAAACGA-TAATTCTGTA
** * ** * *
49545132 AATCGAGGGTAAAACAGTAATTTTAAAAATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
49545186 AATCGAG
1 AATCGAG
49545193 AGTACTTTGG
Statistics
Matches: 381, Mismatches: 46, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
52 1 0.00
53 9 0.02
54 368 0.97
55 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.27
Consensus pattern (54 bp):
AATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
Found at i:49545206 original size:81 final size:81
Alignment explanation
Indices: 49544701--49545221 Score: 568
Period size: 81 Copynumber: 6.4 Consensus size: 81
49544691 GTAATTTCAC
* * * *
49544701 AATCAAGGG-AAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGT
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATC-GAGGGT
*
49544764 AAACCAGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* ** * *
49544781 AATCAAGGGTAAAACAGTAATTTTACAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
49544846 AAACAGTAATTCTGTA
66 AAACAGTAATTCTGTA
* * * ** *
49544862 AA-CTGAGGGTAAAATGGTAATTCTGTAAAACGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGG
1 AATC-GAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATC-GAGGG
**
49544925 TAAAATGGTAATTCTGTA
64 TAAAACAGTAATTCTGTA
* * * *
49544943 AATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
* *
49545008 AAACAATAATTCTATA
66 AAACAGTAATTCTGTA
* * *
49545024 AATCGAGGGTAAAATAGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTTTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
**
49545088 AAAATGGTAATTCTGTA
65 AAAACAGTAATTCTGTA
** * * ** *
49545105 AA-CTGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTAAAAATCAAGGGT
1 AATC-GAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
*
49545169 AAAACGGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* *** * *
49545186 AATCGAGAGTACTTTGGTAATTTTACAAGTCGAGGG
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGG
49545222 CATTTCAGTA
Statistics
Matches: 373, Mismatches: 58, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
80 13 0.03
81 355 0.95
82 5 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:49547671 original size:13 final size:13
Alignment explanation
Indices: 49547653--49547713 Score: 54
Period size: 13 Copynumber: 4.6 Consensus size: 13
49547643 TATAACTTGG
49547653 TATATGAATCGAT
1 TATATGAATCGAT
**
49547666 TATATGGAAATATAT
1 TATAT-G-AATCGAT
*
49547681 T-TATAGAAT-AAT
1 TATAT-GAATCGAT
49547693 TATATGAATCGAT
1 TATATGAATCGAT
49547706 TATATGAA
1 TATATGAA
49547714 AACAGTTATA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
12 7 0.18
13 21 0.54
14 5 0.13
15 6 0.15
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.39
Consensus pattern (13 bp):
TATATGAATCGAT
Found at i:49548770 original size:21 final size:22
Alignment explanation
Indices: 49548745--49548785 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
49548735 GTGTATTTTG
*
49548745 ATGTTTAATGGTAGA-AAATGT
1 ATGTTTAATGATAGATAAATGT
*
49548766 ATGTTTGATGATAGATAAAT
1 ATGTTTAATGATAGATAAAT
49548786 AACATTTACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (22 bp):
ATGTTTAATGATAGATAAATGT
Found at i:49554114 original size:19 final size:19
Alignment explanation
Indices: 49554090--49554127 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
49554080 GACACCCCTA
49554090 ATTATATGTATACAGGCAT
1 ATTATATGTATACAGGCAT
49554109 ATTATATGTATACAGGCAT
1 ATTATATGTATACAGGCAT
49554128 GTGTGAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
ATTATATGTATACAGGCAT
Found at i:49554409 original size:48 final size:48
Alignment explanation
Indices: 49554341--49554905 Score: 923
Period size: 48 Copynumber: 11.8 Consensus size: 48
49554331 CAAGATAAAT
* * * * *
49554341 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
49554389 ATATGTGTATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
49554437 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
49554485 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
49554533 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
49554581 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
49554629 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
49554677 ATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
49554725 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
49554773 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
** *
49554821 ATATGTATATGTGGTAAAGCCGAATGGAAAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
49554869 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
49554906 TGTTGTAACA
Statistics
Matches: 477, Mismatches: 40, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 477 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:49555003 original size:37 final size:37
Alignment explanation
Indices: 49554953--49555052 Score: 191
Period size: 37 Copynumber: 2.7 Consensus size: 37
49554943 AATGTATTCT
49554953 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
49554990 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
*
49555027 GGGTAAGACCCGATAACTACGTGTGG
1 GGGTAAGACCCGATGACTACGTGTGG
49555053 GGACTATTCG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
Found at i:49564539 original size:30 final size:30
Alignment explanation
Indices: 49564505--49564565 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
49564495 TTCCCGAGCC
*
49564505 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
49564535 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
49564565 T
1 T
49564566 GTATTAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:49567384 original size:24 final size:26
Alignment explanation
Indices: 49567286--49567384 Score: 62
Period size: 29 Copynumber: 3.7 Consensus size: 26
49567276 TAAAACCTAA
* *
49567286 AAATGAAATAGTA-TTAAAGGA-AAAT
1 AAAT-AAAAAGTATTTAAAAGATAAAT
49567311 AAAATAAAAAGTACTTTAAGAAGATAAAT
1 -AAATAAAAAGTA-TTTAA-AAGATAAAT
* **
49567340 AAAGATAAAAGTGAAAATAAAA-AT-AAT
1 AAATA-AAAAGT--ATTTAAAAGATAAAT
49567367 AAATAAAAAGTATTTAAA
1 AAATAAAAAGTATTTAAA
49567385 CATTGTCATC
Statistics
Matches: 58, Mismatches: 8, Indels: 16
0.71 0.10 0.20
Matches are distributed among these distances:
24 5 0.09
25 7 0.12
26 10 0.17
27 11 0.19
28 9 0.16
29 12 0.21
30 3 0.05
31 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.11, T:0.23
Consensus pattern (26 bp):
AAATAAAAAGTATTTAAAAGATAAAT
Found at i:49583932 original size:48 final size:48
Alignment explanation
Indices: 49583659--49583934 Score: 218
Period size: 48 Copynumber: 5.8 Consensus size: 48
49583649 AGAGTGAATT
* * * * *
49583659 GCCGATGCCATGTTCCAAACATCGTCTTACACT-GC-CTCACAAGTCGA-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-TA-T-TATG
* * * * *
49583707 GCCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATGTTGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTATG
* * * *
49583755 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-TATG
* ** * * ** *
49583803 GCTGATGCCATGTCCTTGACATGGTCTTACACTGGCTCTCACAACATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTATG
* * * * * *
49583851 ACCAATGCCATGTTCCAAACGTGGTCTTACACTAGCTCTCATATTGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTATG
* *
49583899 GCCGACGCCATGTCCTAGACATGGTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
49583935 ACACGTATCA
Statistics
Matches: 178, Mismatches: 45, Indels: 10
0.76 0.19 0.04
Matches are distributed among these distances:
47 2 0.01
48 169 0.95
49 3 0.02
50 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTATG
Found at i:49592747 original size:46 final size:45
Alignment explanation
Indices: 49592649--49592739 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 45
49592639 AACCCGCCCC
* *
49592649 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCA
*
49592695 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCA
49592739 T
1 T
49592740 CCTAGTGACA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
44 9 0.21
46 33 0.79
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCA
Found at i:49593189 original size:30 final size:30
Alignment explanation
Indices: 49593155--49593214 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
49593145 ATTTAATACG
49593155 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
49593185 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
49593215 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:49594850 original size:39 final size:39
Alignment explanation
Indices: 49594800--49594886 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
49594790 GACTTAATGT
49594800 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
* *
49594839 CTAGCAGGCCTCGTGCTGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
49594878 CTAGCAGGC
1 CTAGCAGGC
49594887 TAATTTCCGG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:49596014 original size:48 final size:48
Alignment explanation
Indices: 49595959--49596084 Score: 155
Period size: 48 Copynumber: 2.6 Consensus size: 48
49595949 GTGAATTGCT
***
49595959 GATGCCATGTTTCAAACATGGTCTTACACTGGCTCACAGGTCGAGC-CC
1 GATGCCATGTTTCAAACATGGTCTTACACTGGCTCACACAAC-AGCACC
* * * *
49596007 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCACAACATCACC
1 GATGCCATGTTTCAAACATGGTCTTACACTGGCTCACACAACAGCACC
* *
49596055 GATGCCATATTCCAAACATGGTCTTACACT
1 GATGCCATGTTTCAAACATGGTCTTACACT
49596085 AGATCTCATA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
47 2 0.03
48 64 0.97
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
GATGCCATGTTTCAAACATGGTCTTACACTGGCTCACACAACAGCACC
Found at i:49596123 original size:96 final size:96
Alignment explanation
Indices: 49595959--49596132 Score: 240
Period size: 96 Copynumber: 1.8 Consensus size: 96
49595949 GTGAATTGCT
* * * * * * *
49595959 GATGCCATGTTTCAAACATGGTCTTACACTGGCTCACAGGTCGAGCCCGATGCCATGTCTCAGAC
1 GATGCCATATTCCAAACATGGTCTTACACTAGATCACAGATCGAGCCCGACGCCATGTCCCAGAC
49596024 ATGGTCTTACACTGGCTCTCACAACATCACC
66 ATGGTCTTACACTGGCTCTCACAACATCACC
* * * * *
49596055 GATGCCATATTCCAAACATGGTCTTACACTAGATCTCATATCGTGGCTGACGCCATGTCCCAGAC
1 GATGCCATATTCCAAACATGGTCTTACACTAGATCACAGATCGAGCCCGACGCCATGTCCCAGAC
49596120 ATGGTCTTACACT
66 ATGGTCTTACACT
49596133 AGCGCACATA
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 66 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (96 bp):
GATGCCATATTCCAAACATGGTCTTACACTAGATCACAGATCGAGCCCGACGCCATGTCCCAGAC
ATGGTCTTACACTGGCTCTCACAACATCACC
Found at i:49602721 original size:26 final size:26
Alignment explanation
Indices: 49602692--49602744 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
49602682 TCAAACATGC
49602692 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
49602718 ATTTTGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
49602744 A
1 A
49602745 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.42
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:49604025 original size:24 final size:24
Alignment explanation
Indices: 49603989--49604120 Score: 194
Period size: 24 Copynumber: 5.5 Consensus size: 24
49603979 TTGGCCGGCC
*
49603989 AAATCCTGCT-CCTTGATAAGCTCCT
1 AAATCCT-CTCCCTT-ATCAGCTCCT
* *
49604014 AAATCTTCTCCTTTATCAGCTCCT
1 AAATCCTCTCCCTTATCAGCTCCT
49604038 AAATCCTCTCCCTTATCAGCTCCT
1 AAATCCTCTCCCTTATCAGCTCCT
*
49604062 AAATCCTCTCCCTTATCAGCTCTT
1 AAATCCTCTCCCTTATCAGCTCCT
49604086 AAATCCTCTCCCTTATCAGCTCCT
1 AAATCCTCTCCCTTATCAGCTCCT
*
49604110 AAATCTTCTCC
1 AAATCCTCTCC
49604121 TGACAGCCTT
Statistics
Matches: 98, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
24 89 0.91
25 9 0.09
ACGTcount: A:0.22, C:0.37, G:0.05, T:0.36
Consensus pattern (24 bp):
AAATCCTCTCCCTTATCAGCTCCT
Found at i:49607923 original size:49 final size:49
Alignment explanation
Indices: 49607880--49608111 Score: 275
Period size: 49 Copynumber: 4.7 Consensus size: 49
49607870 CTGGTATGCA
*
49607880 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* ** ** *
49607929 TAGTAGCCTGCACTAAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTGGTACACG
* * * * *
49607979 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGGTACACG
* * * *
49608030 TAGTAGCCTGTACTTAGTACTACACATGCGAACAATTATCGGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* *
49608079 TAGTAGCCTGCACTTAATACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
49608112 TCACAATAGA
Statistics
Matches: 152, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 70 0.46
50 45 0.30
51 37 0.24
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
Found at i:49615080 original size:25 final size:25
Alignment explanation
Indices: 49615046--49615103 Score: 116
Period size: 25 Copynumber: 2.3 Consensus size: 25
49615036 CATTCATCAC
49615046 AATTCAATATAAAATGAATAATAAT
1 AATTCAATATAAAATGAATAATAAT
49615071 AATTCAATATAAAATGAATAATAAT
1 AATTCAATATAAAATGAATAATAAT
49615096 AATTCAAT
1 AATTCAAT
49615104 TCAAACAAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (25 bp):
AATTCAATATAAAATGAATAATAAT
Found at i:49620885 original size:40 final size:40
Alignment explanation
Indices: 49620841--49620948 Score: 121
Period size: 40 Copynumber: 2.7 Consensus size: 40
49620831 CAACGAGAAA
* * *
49620841 TCGACTATATTTGGCACTTAGTGTGCG-TTTCGAGATAGTT
1 TCGACTATATTTGGCACTAAGTGTGCGAATTCGA-ATAGCT
* *
49620881 TCGACTATA-TAGAGCACTAAGTGTGCGAATTGGAATAGCT
1 TCGACTATATTTG-GCACTAAGTGTGCGAATTCGAATAGCT
* *
49620921 TCGGCTATATATGGCACTAAGTGTGCGA
1 TCGACTATATTTGGCACTAAGTGTGCGA
49620949 TACCAAGATA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
39 2 0.04
40 50 0.88
41 5 0.09
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (40 bp):
TCGACTATATTTGGCACTAAGTGTGCGAATTCGAATAGCT
Found at i:49625008 original size:28 final size:28
Alignment explanation
Indices: 49624964--49625054 Score: 114
Period size: 28 Copynumber: 3.3 Consensus size: 28
49624954 GGAGGAAGCG
* *
49624964 TTCTAGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTACGCCACAAATATCTGT
49624992 TTCTGGTGGCTACGCCACAAATATCTG-
1 TTCTGGTGGCTACGCCACAAATATCTGT
* *
49625019 TTCTGGTAGCT-CTGCCACAAATATCTAT
1 TTCTGGTGGCTAC-GCCACAAATATCTGT
*
49625047 ATCTGGTG
1 TTCTGGTG
49625055 ACTCTGTTAC
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.02
27 23 0.42
28 31 0.56
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (28 bp):
TTCTGGTGGCTACGCCACAAATATCTGT
Found at i:49625060 original size:28 final size:27
Alignment explanation
Indices: 49624976--49625078 Score: 104
Period size: 27 Copynumber: 3.8 Consensus size: 27
49624966 CTAGTGGCTA
*
49624976 TGCCACAAATATCTGTTTCTGGTGGCTAC
1 TGCCACAAATATCTG-TTCTGGTGACT-C
49625005 -GCCACAAATATCTGTTCTGGT-AGCTC
1 TGCCACAAATATCTGTTCTGGTGA-CTC
*
49625031 TGCCACAAATATCTATATCTGGTGACTC
1 TGCCACAAATATCTGT-TCTGGTGACTC
** *
49625059 TGTTAC-AATATTTGTTCTGG
1 TGCCACAAATATCTGTTCTGG
49625079 CAGCCATGCT
Statistics
Matches: 64, Mismatches: 6, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
26 6 0.09
27 30 0.47
28 27 0.42
29 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.36
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGGTGACTC
Found at i:49636782 original size:27 final size:27
Alignment explanation
Indices: 49636735--49636809 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
49636725 AAAAGCAATA
* * *
49636735 AATGTGGCAAAGCCCCCAGTATCAGT-
1 AATGTGGCATAGCCACCAGTAACAGTG
*
49636761 AATTGTGGCATAGCCACAAGTAACAGTG
1 AA-TGTGGCATAGCCACCAGTAACAGTG
* *
49636789 AATGTGACATAGTCACCAGTA
1 AATGTGGCATAGCCACCAGTA
49636810 CAATACTTCC
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.05
27 36 0.90
28 2 0.05
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
AATGTGGCATAGCCACCAGTAACAGTG
Found at i:49636980 original size:27 final size:27
Alignment explanation
Indices: 49636950--49637223 Score: 354
Period size: 27 Copynumber: 10.1 Consensus size: 27
49636940 GGGCATAATC
* * *
49636950 GTCATTTTACCATATAGGGGTATTATG
1 GTCATTTTACCCTATAGGGGCATTACG
* *
49636977 GTCATTTTACCCTACAAGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
** * * *
49637004 ACCATTTTAACCT-TCAGGGGTATTACA
1 GTCATTTTACCCTAT-AGGGGCATTACG
49637031 GTCATTTTACCCTACT-GGGGCATTACG
1 GTCATTTTACCCTA-TAGGGGCATTACG
*
49637058 ATCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
*
49637085 GTCATTTTACCTTATAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * *
49637112 GTCATTTTACCCTACAGGGGTATTATG
1 GTCATTTTACCCTATAGGGGCATTACG
49637139 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
*
49637166 GTCATTTTACCCTATAGGGGCATTACA
1 GTCATTTTACCCTATAGGGGCATTACG
* *
49637193 GTTATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
49637220 GTCA
1 GTCA
49637224 AATAATGACC
Statistics
Matches: 211, Mismatches: 32, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.00
27 209 0.99
29 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGCATTACG
Found at i:49650178 original size:27 final size:26
Alignment explanation
Indices: 49650119--49650178 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
49650109 AAAAGCAATA
* * *
49650119 AATGTGGCAAAGCCCCCAGTATCAGT
1 AATGTGGCAAAGCCACAAGTAACAGT
*
49650145 AATTGTGGCATAGCCACAAGTAACAGT
1 AA-TGTGGCAAAGCCACAAGTAACAGT
49650172 GAATGTG
1 -AATGTG
49650179 AAATAGTCAC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 2 0.07
27 24 0.86
28 2 0.07
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (26 bp):
AATGTGGCAAAGCCACAAGTAACAGT
Found at i:49650365 original size:27 final size:27
Alignment explanation
Indices: 49650335--49650610 Score: 331
Period size: 27 Copynumber: 10.1 Consensus size: 27
49650325 GGGCATAATC
* * *
49650335 GTCATTTTACCATATAGGGGTATTATG
1 GTCATTTTACCCTATAGGGGCATTACG
* *
49650362 GTCATTTTACCCTACAAGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
** * * *
49650389 ACCATTTTAACCT-TCAGGGGTATTACA
1 GTCATTTTACCCTAT-AGGGGCATTACG
49650416 GTCATTTTACCCTACT-GGGGCATTACG
1 GTCATTTTACCCTA-TAGGGGCATTACG
*
49650443 ATCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
*
49650470 GTCATTTTACCTTATAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * *
49650497 GTCATTTTAACCCTACAGGGGGTATTATG
1 GTCATTTT-ACCCTATA-GGGGCATTACG
49650526 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
*
49650553 GTCATTTTACCCTATAGGGGCATTACA
1 GTCATTTTACCCTATAGGGGCATTACG
** *
49650580 GTTTTTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
49650607 GTCA
1 GTCA
49650611 AATAATGACC
Statistics
Matches: 209, Mismatches: 34, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.00
27 177 0.85
28 13 0.06
29 18 0.09
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGCATTACG
Found at i:49650561 original size:110 final size:108
Alignment explanation
Indices: 49650335--49650610 Score: 383
Period size: 110 Copynumber: 2.5 Consensus size: 108
49650325 GGGCATAATC
* * * * **
49650335 GTCATTTTACCATATAGGGGTATTATGGTCATTTTACCCTACAAGGGCATTACGACCATTTTAAC
1 GTCATTTTACCCTATAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTAAC
*
49650400 CTTCAGGGGTATTACAGTCATTTTACCCTACTGGGGCATTACG
66 CTACAGGGGTATTACAGTCATTTTACCCTACTGGGGCATTACG
* * *
49650443 ATCATTTTACCCTATAGGGGCATTACGGTCATTTTACCTTATAGGGGCATTACGGTCATTTTAAC
1 GTCATTTTACCCTATAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTAA-
**
49650508 CCTACAGGGGGTATTATGGTCATTTTACCCTA-TAGGGGCATTACG
65 CCTACA-GGGGTATTACAGTCATTTTACCCTACT-GGGGCATTACG
* **
49650553 GTCATTTTACCCTATAGGGGCATTACAGTTTTTTTACCCTACAGGGGCATTACGGTCA
1 GTCATTTTACCCTATAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGGTCA
49650611 AATAATGACC
Statistics
Matches: 147, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
108 55 0.37
109 6 0.04
110 86 0.59
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (108 bp):
GTCATTTTACCCTATAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTAAC
CTACAGGGGTATTACAGTCATTTTACCCTACTGGGGCATTACG
Found at i:49659166 original size:31 final size:31
Alignment explanation
Indices: 49659129--49659190 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
49659119 TTTCTCGGTA
*
49659129 CATAAATTCTACCTCAGAACAGCAAACAATC
1 CATAAATTCTACCTCAGAACAGAAAACAATC
* *
49659160 CATAAATTCTACCTCGGAATAGAAAACAATC
1 CATAAATTCTACCTCAGAACAGAAAACAATC
49659191 ATCGGATCTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (31 bp):
CATAAATTCTACCTCAGAACAGAAAACAATC
Found at i:49660218 original size:37 final size:37
Alignment explanation
Indices: 49660168--49660278 Score: 168
Period size: 37 Copynumber: 3.0 Consensus size: 37
49660158 ACCTTTAGGT
* * * *
49660168 CAGACGAAATCTCCACACGAAGTTATCGGGTTTTACC
1 CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
49660205 CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* *
49660242 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
49660279 GGAATATATT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
CAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:49660551 original size:48 final size:48
Alignment explanation
Indices: 49660427--49660611 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
49660417 GCACATCGCC
* *
49660427 TACATATTTCACACTAGCCATTCGGCTTTATCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
49660477 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
49660525 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
49660573 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
49660612 TGCATGTTCA
Statistics
Matches: 127, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
48 84 0.66
49 2 0.02
50 41 0.32
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:49660616 original size:98 final size:97
Alignment explanation
Indices: 49660427--49660610 Score: 309
Period size: 98 Copynumber: 1.9 Consensus size: 97
49660417 GCACATCGCC
* *
49660427 TACATATTTCACACTAGCCATTCGGCTTTATCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
49660492 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
*
49660525 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
49660588 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGCTTTACCACATAT
49660611 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 36 0.44
98 45 0.55
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:49660660 original size:47 final size:47
Alignment explanation
Indices: 49660581--49660774 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
49660571 CATACATATT
* * * *
49660581 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
49660628 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
49660675 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * ** *
49660722 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
49660769 TCACAT
1 TCACAT
49660775 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:49660701 original size:22 final size:22
Alignment explanation
Indices: 49660674--49660745 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
49660664 GCTCACATTC
49660674 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
49660696 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
49660720 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
49660743 ATC
1 ATC
49660746 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:49660768 original size:94 final size:94
Alignment explanation
Indices: 49660533--49660774 Score: 290
Period size: 94 Copynumber: 2.6 Consensus size: 94
49660523 CATACATATT
* * * * *
49660533 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT--TCACATTAGCCATTC
1 TCACATTGGCCATTCGGCCTTATCACATAT--ATA-CACATTCATATTCATCACATTAGCCATTC
* *
49660596 GGCTTTACCACATATATGCATGTTCATATTCA
63 GGCCTTACCACATATATGCATGTTCACATTCA
* * * *** * *
49660628 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCATATTCATCACATTAGCCATTCGGC
*
49660693 CTTATCACATATATGCATGTTCACATTCA
66 CTTACCACATATATGCATGTTCACATTCA
*
49660722 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCATATTCATCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCATATTCATCACAT
49660775 AAAATCCTAA
Statistics
Matches: 121, Mismatches: 24, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
92 6 0.05
93 2 0.02
94 88 0.73
95 25 0.21
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (94 bp):
TCACATTGGCCATTCGGCCTTATCACATATATACACATTCATATTCATCACATTAGCCATTCGGC
CTTACCACATATATGCATGTTCACATTCA
Found at i:49664924 original size:39 final size:40
Alignment explanation
Indices: 49664802--49665238 Score: 661
Period size: 40 Copynumber: 10.8 Consensus size: 40
49664792 CCAGCATGAT
* * * *
49664802 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
49664842 TGCTCTTCGGAACTTAGCCCGGATACAT--CTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
49664880 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
49664919 TGCTCTTCGGGACTTAG-CCGGATACATCACTAGCACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGG-------A-T---ACATCACTAGCACGAA
49664969 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
49665009 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
49665048 TGCTCTTCGGGACTTAG-CCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
49665087 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
49665127 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
49665167 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
49665207 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
49665239 CTCAATTCTC
Statistics
Matches: 371, Mismatches: 9, Indels: 34
0.90 0.02 0.08
Matches are distributed among these distances:
37 17 0.05
38 17 0.05
39 100 0.27
40 197 0.53
43 1 0.00
44 1 0.00
46 1 0.00
47 1 0.00
50 32 0.09
51 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:49664980 original size:50 final size:51
Alignment explanation
Indices: 49664905--49665005 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 51
49664895 GCCCGGATAT
49664905 ATCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATACATCACTAGCAC
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAC
49664955 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAC
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAC
49665006 GAATGCTCTT
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 31 0.62
51 19 0.38
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.22
Consensus pattern (51 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAC
Found at i:49666563 original size:37 final size:37
Alignment explanation
Indices: 49666504--49666609 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
49666494 AGCTCAGACG
* * *
49666504 AAATCTCCACACGAAGTTATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
49666541 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
49666578 TAATCTCCACACGTAGTCATC-GGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
49666610 AATATATTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
36 11 0.17
37 54 0.83
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:49666876 original size:48 final size:48
Alignment explanation
Indices: 49666756--49666988 Score: 333
Period size: 48 Copynumber: 4.8 Consensus size: 48
49666746 GCACATCGCC
*
49666756 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* ** *
49666806 TATATATTTCACATT-GACCATTCATCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
* *
49666854 TATATATTTCACATTAGCCATTCGGCTTTTCCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
49666902 TACATATTTCATATTATCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
49666950 TACATATTTCATATTATCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
49666989 TGCATGTTCA
Statistics
Matches: 168, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
48 126 0.75
49 2 0.01
50 40 0.24
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:49667037 original size:47 final size:47
Alignment explanation
Indices: 49666967--49667151 Score: 280
Period size: 47 Copynumber: 3.9 Consensus size: 47
49666957 TTCATATTAT
* * * *
49666967 CCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
* *
49667014 CCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
49667061 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
* * **
49667108 CCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
49667152 AAAATCCTAA
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
Found at i:49667078 original size:22 final size:22
Alignment explanation
Indices: 49667051--49667122 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
49667041 GCTCACATTC
49667051 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
49667073 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
49667097 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
49667120 ATC
1 ATC
49667123 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:49686801 original size:42 final size:42
Alignment explanation
Indices: 49686680--49686833 Score: 168
Period size: 42 Copynumber: 3.6 Consensus size: 42
49686670 TACTACATCA
* * * *
49686680 ATGCCATATCCCAGATATGGTCTTACATG-GGACCTCGTTTCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAG-TCTCATATCG
* * ** *
49686722 ATGCCAATAGCCCAGCTATGGTCTTACACAAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* *
49686765 ATGTCATATCCCAAATATGGTCTTACATGAAGTCTCATAAT-G
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCAT-ATCG
49686807 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
49686834 CATAATCTCA
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 58 0.64
43 33 0.36
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
Found at i:49687902 original size:13 final size:13
Alignment explanation
Indices: 49687886--49687910 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49687876 TGCCTAAACG
49687886 TCAAAATTTTCAA
1 TCAAAATTTTCAA
49687899 TCAAAATTTTCA
1 TCAAAATTTTCA
49687911 TGAAATCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (13 bp):
TCAAAATTTTCAA
Found at i:49688951 original size:37 final size:37
Alignment explanation
Indices: 49688901--49688976 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
49688891 TACTAAGAGA
49688901 GTTACACGGATGAAGAGATAGGCTGGGACACGACTGT
1 GTTACACGGATGAAGAGATAGGCTGGGACACGACTGT
* *
49688938 GTTACACGGATGAAGAGATGGGCTGGGACACGGCTGT
1 GTTACACGGATGAAGAGATAGGCTGGGACACGACTGT
49688975 GT
1 GT
49688977 GTCCCAAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.26, C:0.16, G:0.38, T:0.20
Consensus pattern (37 bp):
GTTACACGGATGAAGAGATAGGCTGGGACACGACTGT
Found at i:49689525 original size:28 final size:29
Alignment explanation
Indices: 49689485--49689540 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 29
49689475 TATCAATATC
49689485 TATAGTTTTCAGAATCT-AAGTTTCATAG
1 TATAGTTTTCAGAATCTAAAGTTTCATAG
49689513 TATAGTTTTCAGAATCTAAAGTTTCATA
1 TATAGTTTTCAGAATCTAAAGTTTCATA
49689541 ATCTATAGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 17 0.63
29 10 0.37
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (29 bp):
TATAGTTTTCAGAATCTAAAGTTTCATAG
Found at i:49691938 original size:10 final size:10
Alignment explanation
Indices: 49691923--49691948 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
49691913 GGTGAAACGA
49691923 AAGAAATTAG
1 AAGAAATTAG
49691933 AAGAAATTAG
1 AAGAAATTAG
49691943 AAGAAA
1 AAGAAA
49691949 ATAGGAGGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.15
Consensus pattern (10 bp):
AAGAAATTAG
Found at i:49696325 original size:29 final size:27
Alignment explanation
Indices: 49696307--49696376 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
49696297 ATATTAAGTC
49696307 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
49696334 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
49696362 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
49696377 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:49696370 original size:28 final size:28
Alignment explanation
Indices: 49696307--49696404 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
49696297 ATATTAAGTC
*
49696307 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
49696334 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
49696362 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
49696391 CGCACACTTAGTGC
1 CGCACACTTAGTGC
49696405 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:49700045 original size:46 final size:46
Alignment explanation
Indices: 49699995--49700170 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
49699985 TGGTTGAGCA
49699995 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
49700041 TCCGAACTCGTTGAGTTGAGTACGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
49700086 CAGCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
49700134 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49700171 GCAGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 27 0.25
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:49701545 original size:39 final size:39
Alignment explanation
Indices: 49701478--49701597 Score: 170
Period size: 39 Copynumber: 3.0 Consensus size: 39
49701468 GCGTTACATC
*
49701478 TTAAATGTGCATCTTAAAT-TCTGAACTTTAATTATGAGTCT
1 TTAAATGTG--TCTTAAATAT-TGCACTTTAATTATGAGTCT
49701519 TTAAATGTGTCTTAAATATTGCACTTTAATTATGAGTCT
1 TTAAATGTGTCTTAAATATTGCACTTTAATTATGAGTCT
* * *
49701558 TTAAATGTGTTTTAAATAATGCACTTTAATTATGTGTCT
1 TTAAATGTGTCTTAAATATTGCACTTTAATTATGAGTCT
49701597 T
1 T
49701598 AATTTTTAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
39 64 0.86
40 1 0.01
41 9 0.12
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (39 bp):
TTAAATGTGTCTTAAATATTGCACTTTAATTATGAGTCT
Found at i:49704051 original size:37 final size:36
Alignment explanation
Indices: 49703965--49704054 Score: 90
Period size: 36 Copynumber: 2.5 Consensus size: 36
49703955 ATGTAGGCGA
* * ** * *
49703965 ACCTCCCTAGATCATGCTATGTAGGCGAATTTAGTG
1 ACCTCCTTAGATCATTCTATGTAGAAGAATCTAGAG
** *
49704001 ACCTCCTCGGATCATTCTATGTAGAAGAATCTGGCAG
1 ACCTCCTTAGATCATTCTATGTAGAAGAATCTAG-AG
49704038 ACCTCCTTAGATCATTC
1 ACCTCCTTAGATCATTC
49704055 CATGGCCATG
Statistics
Matches: 42, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
36 26 0.62
37 16 0.38
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (36 bp):
ACCTCCTTAGATCATTCTATGTAGAAGAATCTAGAG
Found at i:49710827 original size:33 final size:33
Alignment explanation
Indices: 49710787--49710850 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
49710777 AAAGTTAACC
49710787 TGAACATAATAATTATCATTAAAATAAATATTA
1 TGAACATAATAATTATCATTAAAATAAATATTA
*
49710820 TGAACATAATAATTATCATTCAAATAAATAT
1 TGAACATAATAATTATCATTAAAATAAATAT
49710851 AATAATGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (33 bp):
TGAACATAATAATTATCATTAAAATAAATATTA
Found at i:49710846 original size:18 final size:17
Alignment explanation
Indices: 49710792--49710846 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
49710782 TAACCTGAAC
49710792 ATAATAATTATCATT-A
1 ATAATAATTATCATTAA
* * *
49710808 A-AATAAATATTATGAA
1 ATAATAATTATCATTAA
49710824 CATAATAATTATCATTCAA
1 -ATAATAATTATCATT-AA
49710843 ATAA
1 ATAA
49710847 ATATAATAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
15 10 0.34
16 2 0.07
17 1 0.03
18 14 0.48
19 2 0.07
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (17 bp):
ATAATAATTATCATTAA
Found at i:49712797 original size:61 final size:61
Alignment explanation
Indices: 49712685--49712948 Score: 316
Period size: 61 Copynumber: 4.3 Consensus size: 61
49712675 AAACACCAGT
* * * * *
49712685 TAAAGGACAACCTTTATGGCAAAACTCTAGACAGGAAAGCCTTTGTAGTGAGTACTAGATG
1 TAAAGAACAGCCTTTGTGGCAAAACTCTAGATAGGAAAGCCTTTGTGGTGAGTACTAGATG
* * * * *
49712746 GAAATG-ACAGTCTTTGTGGCAAAACTCTAAATAGAAAAGCCTTTGTCGTGAGTACTAGATG
1 TAAA-GAACAGCCTTTGTGGCAAAACTCTAGATAGGAAAGCCTTTGTGGTGAGTACTAGATG
* * * * *
49712807 TAAAGAACAGCCTTTGTGGCAAAACTCTGGACAAGAAAGCCTTTGTGGTGAGTATTGGATG
1 TAAAGAACAGCCTTTGTGGCAAAACTCTAGATAGGAAAGCCTTTGTGGTGAGTACTAGATG
* * * **
49712868 TAAAGAACAACCTTTGTGGAAAAACTCTAGATAGGAAAGCCTTTATGGCAAGTACTAGATG
1 TAAAGAACAGCCTTTGTGGCAAAACTCTAGATAGGAAAGCCTTTGTGGTGAGTACTAGATG
49712929 TAAA-AGACAGCCTTTGTGGC
1 TAAAGA-ACAGCCTTTGTGGC
49712949 CAGTATTGGA
Statistics
Matches: 170, Mismatches: 30, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
60 2 0.01
61 167 0.98
62 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.26
Consensus pattern (61 bp):
TAAAGAACAGCCTTTGTGGCAAAACTCTAGATAGGAAAGCCTTTGTGGTGAGTACTAGATG
Found at i:49712945 original size:93 final size:93
Alignment explanation
Indices: 49712839--49713041 Score: 271
Period size: 93 Copynumber: 2.2 Consensus size: 93
49712829 AACTCTGGAC
* ** * *
49712839 AAGAAAGCCTTTGTGGTGAGTATTGGATGTAAAGAACAACCTTTGTGGAAAAACTCTAGATAGGA
1 AAGACAGCCTTTGTGGCCAGTATTGGATGTAAAGAACAACCTTTGTAGAAAAACTCTAAATAGGA
49712904 AAGCCTTTATGGCAAGTACTAGATGTAA
66 AAGCCTTTATGGCAAGTACTAGATGTAA
** *
49712932 AAGACAGCCTTTGTGGCCAGTATTGGATGTAAAGGGCAACCTTTGTAGCAAAACTCTAAATAGGA
1 AAGACAGCCTTTGTGGCCAGTATTGGATGTAAAGAACAACCTTTGTAGAAAAACTCTAAATAGGA
* * * *
49712997 AAGCTTTTGTGGCGAGTACTGGATGTAA
66 AAGCCTTTATGGCAAGTACTAGATGTAA
* * *
49713025 AGGACAACCTTTATGGC
1 AAGACAGCCTTTGTGGC
49713042 AAAACTTTAG
Statistics
Matches: 95, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 95 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (93 bp):
AAGACAGCCTTTGTGGCCAGTATTGGATGTAAAGAACAACCTTTGTAGAAAAACTCTAAATAGGA
AAGCCTTTATGGCAAGTACTAGATGTAA
Found at i:49712975 original size:32 final size:32
Alignment explanation
Indices: 49712907--49712982 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 32
49712897 GATAGGAAAG
* *
49712907 CCTTTATGGCAAGTACTAGATGTAAAAGACAG
1 CCTTTGTGGCAAGTACTAGATGTAAAAGACAA
* * * * *
49712939 CCTTTGTGGCCAGTATTGGATGTAAAGGGCAA
1 CCTTTGTGGCAAGTACTAGATGTAAAAGACAA
*
49712971 CCTTTGTAGCAA
1 CCTTTGTGGCAA
49712983 AACTCTAAAT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (32 bp):
CCTTTGTGGCAAGTACTAGATGTAAAAGACAA
Found at i:49721682 original size:23 final size:23
Alignment explanation
Indices: 49721662--49721707 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
49721652 TTAAATTTTT
49721662 AATTATTTAGTGATAATATTTAG
1 AATTATTTAGTGATAATATTTAG
*
49721685 AATTATTTAGTGATAATAGTTAG
1 AATTATTTAGTGATAATATTTAG
49721708 TGATAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.46
Consensus pattern (23 bp):
AATTATTTAGTGATAATATTTAG
Found at i:49721683 original size:13 final size:13
Alignment explanation
Indices: 49721665--49721743 Score: 80
Period size: 13 Copynumber: 6.5 Consensus size: 13
49721655 AATTTTTAAT
49721665 TATTTAGTGATAA
1 TATTTAGTGATAA
*
49721678 TATTTA--GA-AT
1 TATTTAGTGATAA
49721688 TATTTAGTGATAA
1 TATTTAGTGATAA
*
49721701 TAGTTAGTGATAA
1 TATTTAGTGATAA
*
49721714 TATTTA--GA-AT
1 TATTTAGTGATAA
49721724 TATTTAGTGATAA
1 TATTTAGTGATAA
*
49721737 TACTTAG
1 TATTTAG
49721744 GAAAAATCTA
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
10 14 0.26
11 4 0.08
12 4 0.08
13 31 0.58
ACGTcount: A:0.38, C:0.01, G:0.15, T:0.46
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:49721715 original size:36 final size:36
Alignment explanation
Indices: 49721668--49721743 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
49721658 TTTTAATTAT
*
49721668 TTAGTGATAATATTTAGAATTATTTAGTGATAATAG
1 TTAGTGATAATATTTAGAATTATTTAGTGATAATAC
49721704 TTAGTGATAATATTTAGAATTATTTAGTGATAATAC
1 TTAGTGATAATATTTAGAATTATTTAGTGATAATAC
49721740 TTAG
1 TTAG
49721744 GAAAAATCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.38, C:0.01, G:0.16, T:0.45
Consensus pattern (36 bp):
TTAGTGATAATATTTAGAATTATTTAGTGATAATAC
Found at i:49721967 original size:79 final size:79
Alignment explanation
Indices: 49721873--49722034 Score: 297
Period size: 79 Copynumber: 2.1 Consensus size: 79
49721863 CTGCATCACT
* * *
49721873 TTTCTATATTGCTATTTCATTCTTTTTTTTTCTTTAACTTTCAACTTTTTGGTTTAATTAGCTTT
1 TTTCTATATTACTATTTCATTCTTTATTTTTCTTTAACTTTCAACTTATTGGTTTAATTAGCTTT
49721938 CATGGCCCTTTCCC
66 CATGGCCCTTTCCC
49721952 TTTCTATATTACTATTTCATTCTTTATTTTTCTTTAACTTTCAACTTATTGGTTTAATTAGCTTT
1 TTTCTATATTACTATTTCATTCTTTATTTTTCTTTAACTTTCAACTTATTGGTTTAATTAGCTTT
49722017 CATGGCCCTTTCCC
66 CATGGCCCTTTCCC
49722031 TTTC
1 TTTC
49722035 CATCTTCCAC
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.17, C:0.20, G:0.07, T:0.56
Consensus pattern (79 bp):
TTTCTATATTACTATTTCATTCTTTATTTTTCTTTAACTTTCAACTTATTGGTTTAATTAGCTTT
CATGGCCCTTTCCC
Found at i:49727078 original size:42 final size:42
Alignment explanation
Indices: 49726961--49727122 Score: 184
Period size: 43 Copynumber: 3.8 Consensus size: 42
49726951 CGATATGTGT
*
49726961 TTTCGTGTAAGACCATGTTTGGGACATTGGCATCG-ATTTGAGA
1 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATTT--GA
*
49727004 TTTATGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
* * * *
49727047 TTTCGTGTAAGACCCTGTCAGGGATAGTGGCATCGATATTTGA
1 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGA
* * *
49727090 TTAT-ATGTAAGACCACGTCTGGGACGTTGGCAT
1 TT-TCGTGTAAGACCATGTCTGGGACATTGGCAT
49727123 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
42 27 0.27
43 39 0.39
44 31 0.31
45 4 0.04
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.34
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
Found at i:49733553 original size:12 final size:12
Alignment explanation
Indices: 49733536--49733576 Score: 50
Period size: 10 Copynumber: 3.5 Consensus size: 12
49733526 GTAAAATTTT
49733536 AAAAATATTCTA
1 AAAAATATTCTA
*
49733548 AAAAAT-TT-TT
1 AAAAATATTCTA
49733558 AAAAATATTCTGA
1 AAAAATATTCT-A
49733571 AAAAAT
1 AAAAAT
49733577 TGAGAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
10 7 0.29
11 4 0.17
12 7 0.29
13 6 0.25
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (12 bp):
AAAAATATTCTA
Found at i:49733560 original size:22 final size:23
Alignment explanation
Indices: 49733528--49733577 Score: 86
Period size: 22 Copynumber: 2.3 Consensus size: 23
49733518 TTAAAAAGGT
49733528 AAAA-TTTTAAAAATATTCT-AA
1 AAAATTTTTAAAAATATTCTGAA
49733549 AAAATTTTTAAAAATATTCTGAA
1 AAAATTTTTAAAAATATTCTGAA
49733572 AAAATT
1 AAAATT
49733578 GAGAAATTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 4 0.15
22 15 0.56
23 8 0.30
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (23 bp):
AAAATTTTTAAAAATATTCTGAA
Found at i:49738000 original size:40 final size:40
Alignment explanation
Indices: 49737906--49738130 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
49737896 TATTCGAATG
* *
49737906 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
49737947 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
49737987 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
49738027 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
49738067 ATATCCGGGCTAAGTA-CCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAG-ACCCGAAGGCATTTGTGCTAGTGACT
*
49738107 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
49738131 CTTGCGCAAG
Statistics
Matches: 159, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 2 0.01
40 127 0.80
41 30 0.19
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:49738120 original size:120 final size:121
Alignment explanation
Indices: 49737906--49738130 Score: 312
Period size: 120 Copynumber: 1.9 Consensus size: 121
49737896 TATTCGAATG
** * *
49737906 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
49737971 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* *
49738027 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TACCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
49738090 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGC
49738131 CTTGCGCAAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
119 3 0.03
120 57 0.63
121 31 0.34
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:49740877 original size:17 final size:17
Alignment explanation
Indices: 49740857--49740890 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
49740847 CTAGATGACT
* *
49740857 TTACTTTCTACTTTATG
1 TTACTTTATACGTTATG
49740874 TTACTTTATACGTTATG
1 TTACTTTATACGTTATG
49740891 GTTCTTTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.15, G:0.09, T:0.56
Consensus pattern (17 bp):
TTACTTTATACGTTATG
Found at i:49743444 original size:46 final size:45
Alignment explanation
Indices: 49743388--49743563 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
49743378 TATTTGGGCA
49743388 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
49743434 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
49743481 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
49743527 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49743564 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:49743543 original size:93 final size:93
Alignment explanation
Indices: 49743384--49743555 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
49743374 AGGATATTTG
* * *
49743384 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49743449 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
49743477 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49743542 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
49743556 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:49745884 original size:48 final size:48
Alignment explanation
Indices: 49745802--49746168 Score: 371
Period size: 48 Copynumber: 7.6 Consensus size: 48
49745792 ATGCTAGGGT
* * * *
49745802 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGACATTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATTGGCATTGA
* * * *
49745850 TATGAGAGCTAGTGTAAGATCATGTCTGGGACATGGCATCGGCCTTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATTGGCATTGA
* * * * *
49745898 TATGTGAG-TCAGTGTAAGACCATGTTTGGAACATCGCATCGACATTGA
1 TATGAGAGCT-AGTGTAAGACCATGTCTGGAACATGGCATTGGCATTGA
* *
49745946 TATGAGAGCTAGTGTAAGACCATGTCTTGG-ACATGGCATTGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTC-TGGAACATGGCATTGGCATTGA
* * * * * *
49745994 TATGTGAGCCAATATAAGACCATGTTTGGAACATGGCATTGGGATTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATTGGCATTGA
* * * ** * *
49746042 TATGAGAACTAGTGTAAGACTATGTCTGGGACATGGCATCAGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATTGGCATTGA
* * **
49746090 TATGTA-AGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCACCGATA
1 TATG-AGAGCTAGTGTAAGACCATGTCTGGAACATGGCATTGGCATTG--A
*
49746140 TATGAGAGCCAGTGTAAGACCATGTCTGG
1 TATGAGAGCTAGTGTAAGACCATGTCTGG
49746169 GAGATGACAT
Statistics
Matches: 259, Mismatches: 52, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
47 4 0.02
48 223 0.86
49 6 0.02
50 26 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATTGGCATTGA
Found at i:49745970 original size:96 final size:96
Alignment explanation
Indices: 49745802--49746182 Score: 537
Period size: 96 Copynumber: 3.9 Consensus size: 96
49745792 ATGCTAGGGT
*
49745802 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGACATTGATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAA
* *
49745867 GATCATGTCTGGGACATGGCATCGGCCTTGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* *
49745898 TATGTGAGTCAGTGTAAGACCATGTTTGGAACATCGCATCGACATTGATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAA
* *
49745963 GACCATGTCTTGGACATGGCATTGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * * ** *
49745994 TATGTGAGCCAATATAAGACCATGTTTGGAACATGGCATTGGGATTGATATGAGAACTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAA
* *
49746059 GACTATGTCTGGGACATGGCATCAGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * * ** *
49746090 TATGTAAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCACCGATATATGAGAGCCAGTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTG--ATATGAGAGCTAGTGT
* *
49746155 AAGACCATGTCTGGGAGATGACATCGGC
64 AAGACCATGTCTGGGACATGGCATCGGC
49746183 ATCTTACCCT
Statistics
Matches: 250, Mismatches: 33, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
96 212 0.85
98 38 0.15
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCGGCCTCGA
Found at i:49746081 original size:144 final size:144
Alignment explanation
Indices: 49745802--49746184 Score: 425
Period size: 144 Copynumber: 2.6 Consensus size: 144
49745792 ATGCTAGGGT
* * * * * *
49745802 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGACATTGATATGAGAGCTAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCCTCGATATGAGAGCCAGTGTAA
* * * * * *
49745867 GATCATGTCTGGGACATGGCATCGGCCTTGATATGTGAGTCAGTGTAAGACCATGTTTGGAACAT
66 GACCATGTCTGGAACATGGCATCGGCATTGATATGAGACTCAGTGTAAGACCATGTCTGGAACAT
*
49745932 CGCATC-GACATTGA
131 CGCATCAG-CATCGA
* * *
49745946 TATGAGAGCTAGTGTAAGACCATGTCTTGG-ACATGGCATTGGCCTCGATATGTGAGCCAATATA
1 TATGAGAGCTAGTGTAAGACCATGT-TTGGAACATGGCATTGGCCTCGATATGAGAGCCAGTGTA
* * * * *
49746010 AGACCATGTTTGGAACATGGCATTGGGATTGATATGAGAACT-AGTGTAAGACTATGTCTGGGAC
65 AGACCATGTCTGGAACATGGCATCGGCATTGATATGAG-ACTCAGTGTAAGACCATGTCTGGAAC
* *
49746074 ATGGCATCAGCCTCGA
129 ATCGCATCAGCATCGA
*
49746090 TATGTA-AGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAC-CGATATATGAGAGCCAGT
1 TATG-AGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGC-CTCG--ATATGAGAGCCAGT
* * *
49746153 GTAAGACCATGTCTGGGAGATGACATCGGCAT
62 GTAAGACCATGTCTGGAACATGGCATCGGCAT
49746185 CTTACCCTTT
Statistics
Matches: 198, Mismatches: 33, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
143 4 0.02
144 148 0.75
145 9 0.05
146 37 0.19
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (144 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCCTCGATATGAGAGCCAGTGTAA
GACCATGTCTGGAACATGGCATCGGCATTGATATGAGACTCAGTGTAAGACCATGTCTGGAACAT
CGCATCAGCATCGA
Found at i:49751021 original size:15 final size:16
Alignment explanation
Indices: 49750988--49751020 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
49750978 AAAAAATTAA
49750988 TTTATTATCTTTTTAT
1 TTTATTATCTTTTTAT
49751004 TTTATT-TCTTTTT-T
1 TTTATTATCTTTTTAT
49751018 TTT
1 TTT
49751021 TCAAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 7 0.41
16 6 0.35
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTATTATCTTTTTAT
Found at i:49755591 original size:25 final size:25
Alignment explanation
Indices: 49755553--49755625 Score: 103
Period size: 25 Copynumber: 3.0 Consensus size: 25
49755543 TAAAGCTTGA
*
49755553 TAAATTT-CTCTTAATAATTCCGAT
1 TAAATTTGCTCTTAATATTTCCGAT
*
49755577 TAAATTTGCTCTTAATATTTCCGGT
1 TAAATTTGCTCTTAATATTTCCGAT
* *
49755602 TAAATTTGCCCTTATTATTTCCGA
1 TAAATTTGCTCTTAATATTTCCGA
49755626 ATATGTTACT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 7 0.16
25 36 0.84
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.47
Consensus pattern (25 bp):
TAAATTTGCTCTTAATATTTCCGAT
Found at i:49756508 original size:45 final size:45
Alignment explanation
Indices: 49756444--49756619 Score: 243
Period size: 45 Copynumber: 4.0 Consensus size: 45
49756434 TATCGTACAG
* *
49756444 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
49756489 TACTATTCGGGCCTTTGAGCCTAGCAGGCTAGAATGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
*
49756534 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGATGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
49756579 TGA-TA-TCAGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGAA
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
49756620 TGAATTCGGG
Statistics
Matches: 121, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
42 11 0.09
43 18 0.15
44 4 0.03
45 87 0.72
46 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:49761622 original size:30 final size:30
Alignment explanation
Indices: 49761588--49761648 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
49761578 CATTTAATAC
49761588 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
49761618 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
49761648 A
1 A
49761649 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:49766036 original size:24 final size:24
Alignment explanation
Indices: 49766005--49766220 Score: 333
Period size: 24 Copynumber: 9.0 Consensus size: 24
49765995 AGCCTATTTC
*
49766005 AATAACTGGGGCAAAAGCCCTTTT
1 AATAACTGGGGCATAAGCCCTTTT
49766029 AATAACTGGGGCATAAGCCCTTTT
1 AATAACTGGGGCATAAGCCCTTTT
*
49766053 AATAACTGGGGCATAAGCCCTTTC
1 AATAACTGGGGCATAAGCCCTTTT
*
49766077 AATAACTAGGGCATAAGCCCTTTT
1 AATAACTGGGGCATAAGCCCTTTT
* *
49766101 GATAACTGGGGCATAAGCCCTTTC
1 AATAACTGGGGCATAAGCCCTTTT
* *
49766125 AATAACTAGGGCATAATCCCTTTT
1 AATAACTGGGGCATAAGCCCTTTT
* * *
49766149 GATAACAGGGGCATAAGCCTTTTT
1 AATAACTGGGGCATAAGCCCTTTT
49766173 AATAACTGGGGCATAAGCCCTTTT
1 AATAACTGGGGCATAAGCCCTTTT
*
49766197 AATCACTGGGGCATAAGCCCTTTT
1 AATAACTGGGGCATAAGCCCTTTT
49766221 GCACTTCCTC
Statistics
Matches: 172, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 172 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
AATAACTGGGGCATAAGCCCTTTT
Found at i:49766296 original size:20 final size:20
Alignment explanation
Indices: 49766271--49766336 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
49766261 TATGAATACC
49766271 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
49766291 TCATGTGCATATCATACGTG
1 TCATGTGCATATCATACATA
49766311 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
49766331 CCATGT
1 TCATGT
49766337 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:49766409 original size:25 final size:25
Alignment explanation
Indices: 49766381--49766428 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
49766371 ATATATAAAC
* * *
49766381 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
49766406 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
49766429 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:49774228 original size:24 final size:24
Alignment explanation
Indices: 49774177--49774320 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
49774167 GCTTTATCAT
*
49774177 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
49774202 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
49774226 ATAACTAGGGCATAACCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
49774250 ATAACTGGGGCATAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
49774274 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
49774298 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
49774321 GCACTTCCTC
Statistics
Matches: 107, Mismatches: 11, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
24 95 0.89
25 12 0.11
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:49774396 original size:20 final size:20
Alignment explanation
Indices: 49774371--49774436 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
49774361 TATGAATACC
49774371 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
49774391 TCATGTGCATATCATACGTT
1 TCATGTGCATATCATACATA
49774411 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
49774431 CCATGT
1 TCATGT
49774437 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:49774505 original size:25 final size:25
Alignment explanation
Indices: 49774473--49774520 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
49774463 ATATATAAAC
* *
49774473 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGAAAAATGGTCATTTTTA
49774498 CCTAGGGGAAAAATGGTCATTTT
1 CCTAGGGGAAAAATGGTCATTTT
49774521 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGAAAAATGGTCATTTTTA
Found at i:49776468 original size:40 final size:39
Alignment explanation
Indices: 49776422--49776646 Score: 290
Period size: 40 Copynumber: 5.7 Consensus size: 39
49776412 GCCACTAGCT
*
49776422 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
49776462 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
49776501 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
49776541 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
49776581 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
49776621 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
49776647 TATCATCCGA
Statistics
Matches: 167, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 40 0.24
40 127 0.76
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:49779621 original size:49 final size:47
Alignment explanation
Indices: 49779540--49779657 Score: 139
Period size: 49 Copynumber: 2.4 Consensus size: 47
49779530 GGATGTTACA
** * *
49779540 ACCTGTCTGGGACATGGCATCGGCCTCGATATATGA-AAGTCAGTGTAAG
1 ACCTGTCTGGGACATGGCATCAACCTC-A-ATAT-ACTAGCCAGTGTAAG
* *
49779589 ACCTGTCTGGGACATGGCATCAACTTTAATATACTAGCCAGTGTAAG
1 ACCTGTCTGGGACATGGCATCAACCTCAATATACTAGCCAGTGTAAG
49779636 ACCATGTCTGGGACATGGCATC
1 ACC-TGTCTGGGACATGGCATC
49779658 GGCATCTTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
46 1 0.02
47 18 0.30
48 19 0.31
49 23 0.38
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (47 bp):
ACCTGTCTGGGACATGGCATCAACCTCAATATACTAGCCAGTGTAAG
Found at i:49781650 original size:13 final size:13
Alignment explanation
Indices: 49781632--49781657 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49781622 TTGAACCCAT
49781632 ACCAAAACAATCA
1 ACCAAAACAATCA
49781645 ACCAAAACAATCA
1 ACCAAAACAATCA
49781658 TAAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:49789941 original size:20 final size:20
Alignment explanation
Indices: 49789913--49789959 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
49789903 CAGAGAGTTA
*
49789913 CACGAGCGTGTCCTAAGCCG
1 CACGAGCGTGTCCCAAGCCG
* *
49789933 CACGGGCGTGTCCCGAGCCG
1 CACGAGCGTGTCCCAAGCCG
49789953 CACGAGC
1 CACGAGC
49789960 ATGTGTGACC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.17, C:0.38, G:0.34, T:0.11
Consensus pattern (20 bp):
CACGAGCGTGTCCCAAGCCG
Found at i:49802681 original size:47 final size:47
Alignment explanation
Indices: 49802624--49802839 Score: 333
Period size: 47 Copynumber: 4.6 Consensus size: 47
49802614 TTAGGATTTT
*
49802624 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
49802671 ATGTGGTGAATGTGAACATGCATATATGTGATGAGGCCGAATGACCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
49802718 ATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
49802765 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * **
49802812 ATGTGGTGAATATGAAAATGCATATATG
1 ATGTGATGAATGTGAGCATGCATATATG
49802840 CGGTAAAGCC
Statistics
Matches: 152, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 152 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:49802820 original size:25 final size:25
Alignment explanation
Indices: 49802745--49802820 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
49802735 ATGCATATAT
49802745 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
49802770 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
49802792 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
49802817 GTGA
1 GTGA
49802821 ATATGAAAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:49803069 original size:37 final size:37
Alignment explanation
Indices: 49803019--49803127 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
49803009 GGAAATATAT
*
49803019 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
49803056 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
49803093 TCTGGGTAAGACCCGATAACTTCGTGTGGAGATTA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTA
49803128 CATCCTAGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:49813694 original size:40 final size:40
Alignment explanation
Indices: 49813463--49813687 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
49813453 TTGAATGATG
* * * *
49813463 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
49813503 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
49813543 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
49813582 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
49813622 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
49813663 -CCGGGCTATG-CGCCGAAGGCATTTG
1 TCCGGGCTAAGTC-CCGAAGGCATTTG
49813688 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 36 0.22
40 120 0.72
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49813709 original size:119 final size:119
Alignment explanation
Indices: 49813463--49813720 Score: 301
Period size: 119 Copynumber: 2.2 Consensus size: 119
49813453 TTGAATGATG
* *
49813463 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
49813528 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
* * * **
49813582 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
49813645 TTGTGCGAGTTACT-ATAACCGGGCTATGCGCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAGC-CCGAAGGCATTTGAACGAGTTA-CTAAA
* *
49813702 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
49813721 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 85 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:49816898 original size:40 final size:39
Alignment explanation
Indices: 49816807--49817029 Score: 250
Period size: 40 Copynumber: 5.6 Consensus size: 39
49816797 TCCTCGTTCA
* * * * *
49816807 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
49816846 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
49816885 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
49816925 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * * *
49816965 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
49817006 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
49817030 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 36 0.22
40 116 0.73
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:49817028 original size:120 final size:119
Alignment explanation
Indices: 49816807--49817029 Score: 281
Period size: 120 Copynumber: 1.9 Consensus size: 119
49816797 TCCTCGTTCA
* * * *
49816807 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
* *
49816872 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
49816926 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CTTAACCCGGA
* *
49816990 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
49817030 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
119 37 0.42
120 45 0.51
121 6 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:49823231 original size:40 final size:40
Alignment explanation
Indices: 49823061--49823361 Score: 378
Period size: 40 Copynumber: 7.6 Consensus size: 40
49823051 TCCTCATTCA
* * * * *
49823061 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
49823100 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
49823140 ACTG-CTTCGGGACTTAACCCGGATTTAATAACTCGC-CG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
49823178 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
49823218 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
49823258 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
49823298 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
49823338 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
49823362 CAGCATTCAA
Statistics
Matches: 234, Mismatches: 22, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
38 5 0.02
39 99 0.42
40 122 0.52
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:49831007 original size:40 final size:39
Alignment explanation
Indices: 49830923--49831106 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 39
49830913 TTGAATGATG
* * * *
49830923 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
49830963 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
49831003 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
49831042 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
49831083 -CCGGGCTATGCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTG
49831107 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 48 0.39
40 66 0.53
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49831059 original size:79 final size:80
Alignment explanation
Indices: 49830923--49831106 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 80
49830913 TTGAATGATG
*
49830923 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
49830987 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * * **
49831002 TTCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
49831065 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* *
49831082 ACCGGGCTATGCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTG
49831107 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
78 1 0.01
79 72 0.78
80 19 0.21
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATA
Found at i:49831113 original size:79 final size:78
Alignment explanation
Indices: 49830976--49831139 Score: 215
Period size: 79 Copynumber: 2.1 Consensus size: 78
49830966 GGACTAAGAT
* **
49830976 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTA-CTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TAGCTA
*
49831040 AATCCGGGTTAAGTC
65 AATCC-GGTTAAATC
* *
49831055 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGCCCGAAGGCATTTGAACGAGTAGCTA
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAGCCCGAAGGCATTTGAACGAGTAGCTA
* *
49831119 TATCCGGTTAAATT
65 AATCCGGTTAAATC
49831133 CCGAAGG
1 CCGAAGG
49831140 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
78 18 0.24
79 57 0.76
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTAGCTAA
ATCCGGTTAAATC
Found at i:49835329 original size:49 final size:49
Alignment explanation
Indices: 49835262--49835481 Score: 184
Period size: 49 Copynumber: 4.6 Consensus size: 49
49835252 ACATCAAAGT
*
49835262 CGATGCCATGTCCCAGACAGGTCTTACACTGAATTTCATATATCAAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAATCTCATATATCAAGGC
* * * * * * * *
49835311 CGATTCCGTGTCCTAGACAGGTCTTACACTGACTCTCATTTATCGATGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAATCTCATATATCAAGGC
* * * *
49835360 CGATGCCATGTCCCAGATAGGTCTTACATTG-A-CACACA-A-CAA-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAATCTCATATATCAAGGC
* * ** * *
49835404 TGACGCCATGTCCCAGACAGGTCTTACACTAGCTTGT-ATATCTCAAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACT-GAATCTCATATATCAAGGC
* * *
49835453 TGATG-CGTGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
49835482 AGCTCTCGTC
Statistics
Matches: 133, Mismatches: 32, Indels: 13
0.75 0.18 0.07
Matches are distributed among these distances:
44 27 0.20
45 3 0.02
46 3 0.02
47 3 0.02
48 25 0.19
49 72 0.54
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGAATCTCATATATCAAGGC
Found at i:49835519 original size:46 final size:46
Alignment explanation
Indices: 49835410--49835576 Score: 138
Period size: 46 Copynumber: 3.6 Consensus size: 46
49835400 AAGCTGACGC
* * * **
49835410 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCAAGGCTGATG
1 CATGACCCAGACATGTCTTACACTAGC-TCT-CGTCTCAAGGCTGATG
* * * *
49835458 CGTGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCTGGTG
1 CATGACCCAGACATGTCTTACACTAGCTCTCGTCTCAAGGCTGATG
* * * * * ** *
49835504 CATGACCCTGACATGTCTTACGCTGGCTCTCATAAT-GTGGCCGATG
1 CATGACCCAGACATGTCTTACACTAGCTCTCGT-CTCAAGGCTGATG
*
49835550 CATGTCCCAGACATGTCTTACACTAGC
1 CATGACCCAGACATGTCTTACACTAGC
49835577 ACACATATCA
Statistics
Matches: 95, Mismatches: 23, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
46 67 0.71
47 3 0.03
48 25 0.26
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (46 bp):
CATGACCCAGACATGTCTTACACTAGCTCTCGTCTCAAGGCTGATG
Found at i:49838398 original size:18 final size:18
Alignment explanation
Indices: 49838375--49838409 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49838365 TTCCTGGGTG
49838375 GTAGTCGATTATCAACTT
1 GTAGTCGATTATCAACTT
**
49838393 GTAGTCTTTTATCAACT
1 GTAGTCGATTATCAACT
49838410 CCAACCATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (18 bp):
GTAGTCGATTATCAACTT
Found at i:49843162 original size:49 final size:49
Alignment explanation
Indices: 49843101--49843227 Score: 139
Period size: 49 Copynumber: 2.6 Consensus size: 49
49843091 CATCAAAGTC
* * *
49843101 GATGCCATGTCCCAGATAGGTCTTACACTAACTTTTATATATCGAG-GTT
1 GATGCCGTGTCCCAGACAGGTCTTACACTAACTTTCATATAT-GAGTGTT
* * * ** * *
49843150 GATGCCGTGTCCCAGACAGGTATTAAAATGGCTTTCATCTATTAGTGTT
1 GATGCCGTGTCCCAGACAGGTCTTACACTAACTTTCATATATGAGTGTT
*
49843199 GATGCCGTGTCCCAAACAGGTCTTACACT
1 GATGCCGTGTCCCAGACAGGTCTTACACT
49843228 GACACACAAC
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
48 2 0.03
49 61 0.97
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32
Consensus pattern (49 bp):
GATGCCGTGTCCCAGACAGGTCTTACACTAACTTTCATATATGAGTGTT
Found at i:49843314 original size:48 final size:47
Alignment explanation
Indices: 49843248--49843414 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 47
49843238 AAGCTGACAC
* *
49843248 CATGTCCCATACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATATCTCGAGGCTGATG
* * * * *
49843296 CATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAATG-TCATTG
1 CATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCTGA-TG
* * * * * *
49843342 CATGTACCAGACATGTCTTACACTGGCTCTCATA-AT-GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TTATATCTCGAGGCTGATG
49843388 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
49843415 ACACATATCA
Statistics
Matches: 95, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
45 2 0.02
46 63 0.66
47 3 0.03
48 27 0.28
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCTGATG
Found at i:49848257 original size:3 final size:3
Alignment explanation
Indices: 49848241--49848729 Score: 158
Period size: 3 Copynumber: 163.3 Consensus size: 3
49848231 CGTGAATATG
* * * *
49848241 TTA TTA TT- TATA TTA TTG TTA TTA TTA CTA TTA TTAA ATA TTC TTA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
* * * * * * *
49848287 TTA TTA CTA TTA TTT TTG TTCC TT- TTA TTA TTGT TTA TTA TCA ATA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TT-A TTA TTA TTA TTA
49848333 -TA TTA TTA TTA TTA TTA TTA TTA CTT- TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* * * * *
49848377 CTTG TCA TTA TT- TTCA TCA CTA CTA TTA TT- TATA CCTTA TTA TTA
1 -TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA T-TA --TTA TTA TTA
* * ** * * *
49848422 TTA CATA TTA TT- TTA CTA TCG TTA TCTA ATA -TA TTA TCA TTA TCA
1 TTA -TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
* * * * * * *
49848467 TTA TTA TTA TT- TTA GTA TTG TAA CTTA ATA -CA TTA ATA TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* * * * *
49848511 TTT TTA TT- TTC GTC TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
49848557 TT- GTA TT- TTAA TGTA TTA TTA ATA TTA CTT- TTA TT- TTCA TTA TTA
1 TTA TTA TTA TT-A T-TA TTA TTA TTA TTA -TTA TTA TTA TT-A TTA TTA
** * * * ** *
49848602 TTA TTA TTA CCA TTA TTCT TTA TTG TCA TGG TTA TTA TT- TTA TTT
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
49848647 TTA -TA GCTA TTA TT- TT- TTA TCA CTA ATA TTA CTA TTG TTA -TA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
49848689 TTTA TTA TTA TTA CTT- TTA TTA TAA TTA CTA TTA TTA TTA T
1 -TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA T
49848730 CATGGTTTTT
Statistics
Matches: 352, Mismatches: 92, Indels: 84
0.67 0.17 0.16
Matches are distributed among these distances:
2 40 0.11
3 275 0.78
4 33 0.09
5 3 0.01
6 1 0.00
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:49848543 original size:73 final size:71
Alignment explanation
Indices: 49848453--49848610 Score: 190
Period size: 73 Copynumber: 2.2 Consensus size: 71
49848443 TTATCTAATA
* * * * * *
49848453 TATTATCATTATCATTATTATTATTTTAGTATTGTAACTTAATACATTAATATTGTTATTTTTAT
1 TATTATTATTATTATTATTATTATTTTACTATTGTAACTTAATACATTAATAATATTACTTTTAT
*
49848518 TTTCGTCT
66 TTTC--AT
** ** *
49848526 TATTATTATTATTATTATTATTATTTTACTATTGTATTTTAATGTATTATTAATATTACTTTTAT
1 TATTATTATTATTATTATTATTATTTTACTATTGTAACTTAATACATTAATAATATTACTTTTAT
49848591 TTTCAT
66 TTTCAT
49848597 TATTATTATTATTA
1 TATTATTATTATTA
49848611 CCATTATTCT
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
71 15 0.21
73 58 0.79
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.61
Consensus pattern (71 bp):
TATTATTATTATTATTATTATTATTTTACTATTGTAACTTAATACATTAATAATATTACTTTTAT
TTTCAT
Found at i:49849025 original size:3 final size:3
Alignment explanation
Indices: 49849007--49849067 Score: 59
Period size: 3 Copynumber: 20.0 Consensus size: 3
49848997 ATTAATGTAG
* * * *
49849007 TAT TAT TAC TAGT TAT TAT TAT TAT TAT TAT CAC TAT TAT TTT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
49849053 TTT TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT
49849068 CATTTTTTAA
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
3 43 0.96
4 2 0.04
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Done.