Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 153 of 352
Found at i:50194830 original size:27 final size:27
Alignment explanation
Indices: 50194813--50195169 Score: 348
Period size: 27 Copynumber: 13.2 Consensus size: 27
50194803 ATTATTAAAG
50194813 TACCCTCGAATTACAAAAATTACTATTT
1 TACCCTCGAATTAC-AAAATTACTATTT
* *
50194841 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGAATTACAAAATTACTATTT
*
50194868 TACCCTC-AATTTATAAAATTACTATTT
1 TACCCTCGAA-TTACAAAATTACTATTT
* *
50194895 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGAATTACAAAATTACTATTT
* * *
50194922 TACCCTCGATTTATAGAAA-TATTATTT
1 TACCCTCGAATTACA-AAATTACTATTT
* * * **
50194949 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGAATTACAAAATTACTATTT
* * * *
50194976 TACCCTCGATTTATAAAATTATTGTTT
1 TACCCTCGAATTACAAAATTACTATTT
* * *
50195003 TACCCTCG-ATTGACAGAATTATTGTTT
1 TACCCTCGAATT-ACAAAATTACTATTT
* *
50195030 TACCCTCG-ATTGACAGAATTACTGTTT
1 TACCCTCGAATT-ACAAAATTACTATTT
*
50195057 TACCCT-TAATTTACAAAATTACTATTT
1 TACCCTCGAA-TTACAAAATTACTATTT
*
50195084 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGAATTACAAAATTACTATTT
* *
50195111 TACCCTC-AATTTATAGAATTACTATTT
1 TACCCTCGAA-TTACAAAATTACTATTT
* * *
50195138 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGAATTACAAAATTACTATTT
50195165 TACCC
1 TACCC
50195170 CTGGGGTGTT
Statistics
Matches: 286, Mismatches: 33, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
26 6 0.02
27 259 0.91
28 21 0.07
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGAATTACAAAATTACTATTT
Found at i:50194902 original size:54 final size:54
Alignment explanation
Indices: 50194813--50195169 Score: 464
Period size: 54 Copynumber: 6.6 Consensus size: 54
50194803 ATTATTAAAG
* *
50194813 TACCCTCGAATTACAAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTA-TAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* * *
50194868 TACCCTCAATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* * **
50194922 TACCCTCGATTTATAGAAA-TATTATTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATA-AAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* * * * *
50194976 TACCCTCGATTTATAAAATTATTGTTTTACCCTCGATTGACAGAATTATTGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* * * * ** *
50195030 TACCCTCGATTGACAGAATTACTGTTTTACCCTTAATTTACAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* * *
50195084 TACCCTCGATTTACAAAATTACTATTTTACCCTCAATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
*
50195138 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAAAATTACTATTTTACCC
50195170 CTGGGGTGTT
Statistics
Matches: 267, Mismatches: 33, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
53 3 0.01
54 250 0.94
55 14 0.05
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
Found at i:50194950 original size:81 final size:81
Alignment explanation
Indices: 50194813--50195169 Score: 473
Period size: 81 Copynumber: 4.4 Consensus size: 81
50194803 ATTATTAAAG
* *
50194813 TACCCTCGAATTACAAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAAT
1 TACCCTCGATTTAC-AAAATTACTATTTTACCCTCGATTTACAGAAATACTATTTTACCCTCAAT
*
50194878 TTATAAAATTACTATTT
65 TTATAGAATTACTATTT
* * * *
50194895 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAAATATTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAAATACTATTTTACCCTCAATT
**
50194960 TATAGAATTACCGTTT
66 TATAGAATTACTATTT
* * * * * * * *
50194976 TACCCTCGATTTATAAAATTATTGTTTTACCCTCGATTGACAGAATTATTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAAATACTATTTTACCCTCAATT
* * *
50195041 GACAGAATTACTGTTT
66 TATAGAATTACTATTT
**
50195057 TACCCTTAATTTACAAAATTACTATTTTACCCTCGATTTACA-AAATTACTATTTTACCCTCAAT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAAA-TACTATTTTACCCTCAAT
50195121 TTATAGAATTACTATTT
65 TTATAGAATTACTATTT
* *
50195138 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACTATTTTACCC
50195170 CTGGGGTGTT
Statistics
Matches: 237, Mismatches: 37, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
80 2 0.01
81 222 0.94
82 13 0.05
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAAATACTATTTTACCCTCAATT
TATAGAATTACTATTT
Found at i:50195708 original size:31 final size:31
Alignment explanation
Indices: 50195673--50195751 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
50195663 TTGCATTCAC
* * *
50195673 ATTCTGATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
* *
50195704 ATTCTTATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
50195735 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
50195752 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:50195713 original size:6 final size:6
Alignment explanation
Indices: 50195695--50195760 Score: 64
Period size: 6 Copynumber: 10.8 Consensus size: 6
50195685 ATTTTGTTAC
* * *
50195695 CTGATA CTGATT CTTATT CTGATT CTG-TCAC CTGATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT
50195744 CTGATT CT-AGTT CTGAT
1 CTGATT CTGA-TT CTGAT
50195761 AATGTTTCTT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
5 2 0.04
6 43 0.86
7 4 0.08
8 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:50195718 original size:12 final size:12
Alignment explanation
Indices: 50195673--50195760 Score: 65
Period size: 12 Copynumber: 7.2 Consensus size: 12
50195663 TTGCATTCAC
*
50195673 ATTCTGATTTTG
1 ATTCTGATTCTG
*
50195685 ATTTTG-TTACCTG
1 ATTCTGATT--CTG
* *
50195698 ATACTGATTCTT
1 ATTCTGATTCTG
50195710 ATTCTGATTCTG
1 ATTCTGATTCTG
*
50195722 -TCACCTGATTCTG
1 AT--TCTGATTCTG
50195735 ATTCTGATTCTG
1 ATTCTGATTCTG
50195747 ATTCT-AGTTCTG
1 ATTCTGA-TTCTG
50195759 AT
1 AT
50195761 AATGTTTCTT
Statistics
Matches: 60, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
11 4 0.07
12 38 0.63
13 15 0.25
14 3 0.05
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (12 bp):
ATTCTGATTCTG
Found at i:50197467 original size:50 final size:50
Alignment explanation
Indices: 50197367--50197471 Score: 149
Period size: 50 Copynumber: 2.1 Consensus size: 50
50197357 GTCACACACT
* *
50197367 CGTGTAGCTTGGGACACGCCCGTTGGGCAGGCCGTGTGGTCACATACGCC
1 CGTGTAGCTTGGGACAAGCCCGTTGGGCAGGCCGTGTGGTCACACACGCC
* * *
50197417 CGTGTGGCTTGGGACAAGCCTGTTGGGCAGGCCGTGGTGGTCA-ACGCGCC
1 CGTGTAGCTTGGGACAAGCCCGTTGGGCAGGCCGT-GTGGTCACACACGCC
50197467 CGTGT
1 CGTGT
50197472 CCCTAACTTG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
50 42 0.86
51 7 0.14
ACGTcount: A:0.12, C:0.28, G:0.39, T:0.21
Consensus pattern (50 bp):
CGTGTAGCTTGGGACAAGCCCGTTGGGCAGGCCGTGTGGTCACACACGCC
Found at i:50198665 original size:43 final size:44
Alignment explanation
Indices: 50198555--50198665 Score: 111
Period size: 43 Copynumber: 2.6 Consensus size: 44
50198545 ATGCTATACT
* * *
50198555 AGATATGGTCTTACATGT-GATCTCGTATCGATGCGAATAGCCC
1 AGATATGGTCTTACACGTAAATCTCATATCGATGCGAATAGCCC
* * * * * * *
50198598 AGCTATGGCCTTAAACG-AAGTCTCATATCGATTC-CATATCCC
1 AGATATGGTCTTACACGTAAATCTCATATCGATGCGAATAGCCC
50198640 AGATATGGTCTTACACGTAAATCTCA
1 AGATATGGTCTTACACGTAAATCTCA
50198666 GTAACCCTAA
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
42 20 0.38
43 32 0.62
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
AGATATGGTCTTACACGTAAATCTCATATCGATGCGAATAGCCC
Found at i:50200553 original size:20 final size:20
Alignment explanation
Indices: 50200524--50200568 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
50200514 AGCACATGTA
* *
50200524 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
50200544 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
50200564 TTCAT
1 TTCAT
50200569 TTTAATCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:50202173 original size:45 final size:45
Alignment explanation
Indices: 50202124--50202392 Score: 421
Period size: 45 Copynumber: 6.0 Consensus size: 45
50202114 CATTTCACTA
* * *
50202124 GCATTATAGCCTGTTAGGCTCAAAGGCCCGAATTATATCTCACTG
1 GCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCG
*
50202169 GCATTATAGCTTGCTAGGCTCAAAGGCCCGAATAATATCTCACCG
1 GCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCG
*
50202214 GCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTTACCG
1 GCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCG
* * *
50202259 GCATTATAGCCTTCTAGGCTCAAAGGCCCGAATAACATTTCACCG
1 GCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCG
* * *
50202304 GCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAACATTTCACCG
1 GCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCG
* *
50202349 GCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACC
1 GCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACC
50202393 AGTTCTTTCC
Statistics
Matches: 211, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 211 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (45 bp):
GCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCG
Found at i:50202224 original size:90 final size:90
Alignment explanation
Indices: 50202094--50202392 Score: 442
Period size: 90 Copynumber: 3.3 Consensus size: 90
50202084 ATTTCGCCTA
* * ** *
50202094 CTAGGCTC-GAGGCCCG-ATATCATTTCACTAGCATTATAGCCTGTTAGGCTCAAAGGCCCGAAT
1 CTAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT
* *
50202157 TATATCTCACTGGCATTATAGCTTG
66 AATATCTCACCGGCATTATAGCTTG
* *
50202182 CTAGGCTCAAAGGCCCGAATAATATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT
1 CTAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT
*
50202247 AATATCTTACCGGCATTATAGCCTT-
66 AATATCTCACCGGCATTATAG-CTTG
*
50202272 CTAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAAT
1 CTAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT
* * *
50202337 AACATTTCACCGGCATTATAGCCTG
66 AATATCTCACCGGCATTATAGCTTG
50202362 CTAGGCTCAAAGGCCCGAATAACATTTCACC
1 CTAGGCTCAAAGGCCCGAATAACATTTCACC
50202393 AGTTCTTTCC
Statistics
Matches: 190, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
88 8 0.04
89 9 0.05
90 170 0.89
91 3 0.02
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (90 bp):
CTAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT
AATATCTCACCGGCATTATAGCTTG
Found at i:50208260 original size:48 final size:48
Alignment explanation
Indices: 50208186--50209011 Score: 1373
Period size: 48 Copynumber: 17.0 Consensus size: 48
50208176 CAAGATAAAT
* * * *
50208186 ATATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
50208234 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
50208282 ATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
50208330 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
50208380 ATATGTATATGTGATAAAGCCGAATGGATAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
50208428 ATACGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAG
*
50208480 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
50208528 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
50208576 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
50208626 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
50208674 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
50208722 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
50208770 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
50208818 ATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAC
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
50208866 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
50208914 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
50208962 ATATGTATATGTGGTAAAGCCGAATTGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
50209010 AT
1 AT
50209012 GTGTGTATAT
Statistics
Matches: 739, Mismatches: 31, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
48 596 0.81
49 9 0.01
50 90 0.12
51 1 0.00
52 43 0.06
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:50209202 original size:37 final size:37
Alignment explanation
Indices: 50209152--50209250 Score: 171
Period size: 37 Copynumber: 2.7 Consensus size: 37
50209142 GGAAATATAT
50209152 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
50209189 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
50209226 TCCGGGTAAGACTCGATAACTACGT
1 TCCGGGTAAGACCCGATGACTACGT
50209251 CTGGGGACTA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:50211248 original size:45 final size:45
Alignment explanation
Indices: 50211149--50211375 Score: 300
Period size: 45 Copynumber: 5.1 Consensus size: 45
50211139 TTTTCTCAAA
* * *
50211149 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-AT-ATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATC
* * *
50211191 TCACCGGCATTATAGCCTGTTAGTCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
50211236 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
50211281 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* * * *
50211326 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCAAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
50211371 TCACC
1 TCACC
50211376 AGTTCTTTCC
Statistics
Matches: 166, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
42 11 0.07
43 12 0.07
44 7 0.04
45 135 0.81
46 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:50218451 original size:48 final size:48
Alignment explanation
Indices: 50218377--50219156 Score: 1254
Period size: 48 Copynumber: 16.0 Consensus size: 48
50218367 CAAGATAAAT
* * * *
50218377 ATATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
50218425 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
50218473 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
50218523 ATATGTATATGTGGTAAAGCCGAATGGATAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** *
50218571 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAG
*
50218623 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
50218671 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
50218719 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
50218769 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
50218817 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
*
50218867 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
50218915 ATATGTATATGTGGTAAAACCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
50218963 ATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAC
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
50219011 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
50219059 ATATGTATATGTGGTAAAGCGGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
50219107 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
50219155 AT
1 AT
50219157 GTGTTATTTG
Statistics
Matches: 690, Mismatches: 32, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
48 500 0.72
49 13 0.02
50 134 0.19
51 1 0.00
52 42 0.06
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:50218988 original size:96 final size:96
Alignment explanation
Indices: 50218377--50219156 Score: 1254
Period size: 98 Copynumber: 8.0 Consensus size: 96
50218367 CAAGATAAAT
* * * *
50218377 ATATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
50218442 AGCCGAATGGCTAATGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
*
50218473 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGT
* *
50218538 AAAGCCGAATGGATAATATGAAATATGTATGAG
64 AAAGCCGAATGGCTAATGTGAAATATGTATGAG
** *
50218571 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAGATATGTATATGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAGATATGTATATGTG
*
50218636 GTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
62 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
50218671 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
50218736 AGCCGAATGGCTAATGTGAAATATATATATGAG
66 AGCCGAATGGCTAATGTG-AA-ATATGTATGAG
50218769 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
50218834 AGCCGAATGGCTAATGTGAAATATATATATGAG
66 AGCCGAATGGCTAATGTG-AA-ATATGTATGAG
*
50218867 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
50218932 AACCGAATGGCTAGTGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
50218963 ATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGACATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
50219028 AGCCGAATGGCTAGTGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
* *
50219059 ATATGTATATGTGGTAAAGCGGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
50219124 AGCCGAATGGCTAGTGTGAAATATGTAGGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
50219155 AT
1 AT
50219157 GTGTTATTTG
Statistics
Matches: 651, Mismatches: 27, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
96 273 0.42
97 7 0.01
98 278 0.43
99 2 0.00
100 91 0.14
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (96 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:50219344 original size:37 final size:37
Alignment explanation
Indices: 50219294--50219392 Score: 171
Period size: 37 Copynumber: 2.7 Consensus size: 37
50219284 TGGAATATAT
50219294 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
50219331 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
50219368 TCCGGGTAAGACTCGATAACTACGT
1 TCCGGGTAAGACCCGATGACTACGT
50219393 CTGGGACTAT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:50221421 original size:44 final size:45
Alignment explanation
Indices: 50221282--50221506 Score: 282
Period size: 45 Copynumber: 5.1 Consensus size: 45
50221272 TTTTCTCAAA
* * *
50221282 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-AT-ATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATC
* * *
50221324 TCACCGG-ATTATAGCCTGTTAGTCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
50221368 TCACTGGCATTAGAGCCTGCTAGGCTCAAAGG-CCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
50221412 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* * *
50221457 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
50221502 TCACC
1 TCACC
50221507 AGTTCTTTCC
Statistics
Matches: 161, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
41 3 0.02
42 19 0.12
43 7 0.04
44 51 0.32
45 81 0.50
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:50221440 original size:89 final size:87
Alignment explanation
Indices: 50221282--50221490 Score: 262
Period size: 89 Copynumber: 2.4 Consensus size: 87
50221272 TTTTCTCAAA
** * * *
50221282 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCGATATCATTTCACCGGATTATAGCCTGTTA
1 TCACCGGCATTAGAGCCTGCTAGGCTCAAAGG-CCGATATCATCTCACCGGATTATAGCCTGCTA
* **
50221345 GTCTCAAAGGCCCGAATAGTATC
65 GGCTCAAAGGCCCGAATAACATC
*
50221368 TCACTGGCATTAGAGCCTGCTAGGCTCAAAGGCCGAATAAT-ATCTCACCGGCATTATAGCCTGC
1 TCACCGGCATTAGAGCCTGCTAGGCTCAAAGGCCG-AT-ATCATCTCACCGG-ATTATAGCCTGC
*
50221432 TAGGCTCAAAGGCCCGAATAACATT
63 TAGGCTCAAAGGCCCGAATAACATC
*
50221457 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCC
1 TCACCGGCATTAGAGCCTGCTAGGCTCAAAGGCC
50221491 CAAATAACAT
Statistics
Matches: 106, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
86 10 0.09
87 16 0.15
88 14 0.13
89 66 0.62
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (87 bp):
TCACCGGCATTAGAGCCTGCTAGGCTCAAAGGCCGATATCATCTCACCGGATTATAGCCTGCTAG
GCTCAAAGGCCCGAATAACATC
Found at i:50225119 original size:26 final size:26
Alignment explanation
Indices: 50225089--50225140 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
50225079 CACCGCTGAA
*
50225089 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
50225115 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
50225141 CTTTTCACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:50225224 original size:26 final size:26
Alignment explanation
Indices: 50225195--50225246 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
50225185 ACCAATGAAC
*
50225195 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
50225221 CGGGGAATCAGCACATAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
50225247 TTCACATTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:50225238 original size:105 final size:103
Alignment explanation
Indices: 50225057--50225322 Score: 421
Period size: 105 Copynumber: 2.6 Consensus size: 103
50225047 TAACCGTTAT
* **
50225057 TGGTGGATCTCGCACT-TAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATATCGCACTATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
50225121 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAA-CCCC-TTTCACATTTCAAAGATA
* *
50225161 TGGTGGATATCGCACTATTGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATATCGCACTATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
50225226 AATCAGCACATAGCAACCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCTTTCACATTTCAAAGATA
**
50225264 TGGTGGATCA-CGCAC-ATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
50225323 TTTATATACA
Statistics
Matches: 151, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
102 40 0.26
103 31 0.21
104 20 0.13
105 60 0.40
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.19
Consensus pattern (103 bp):
TGGTGGATATCGCACTATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
AATCAGCACATAGCAACCCCTTTCACATTTCAAAGATA
Found at i:50225483 original size:20 final size:21
Alignment explanation
Indices: 50225445--50225484 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
50225435 ATTTTAATTC
* *
50225445 CAAATAAATCTCAACATATAT
1 CAAATAAATATCAAAATATAT
50225466 CAAAT-AATATCAAAATATA
1 CAAATAAATATCAAAATATA
50225485 CATTAAGTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (21 bp):
CAAATAAATATCAAAATATAT
Found at i:50225680 original size:29 final size:29
Alignment explanation
Indices: 50225647--50225710 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
50225637 TAATCCACCA
50225647 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
50225676 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
50225706 CCCAA
1 CCCAA
50225711 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:50225684 original size:30 final size:30
Alignment explanation
Indices: 50225654--50225710 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
50225644 CCACCCAACT
50225654 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
50225683 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
50225711 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:50258284 original size:13 final size:13
Alignment explanation
Indices: 50258266--50258290 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50258256 AAGTAATCGC
50258266 ACACGGGCATGTT
1 ACACGGGCATGTT
50258279 ACACGGGCATGT
1 ACACGGGCATGT
50258291 CCTTGCCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.20
Consensus pattern (13 bp):
ACACGGGCATGTT
Found at i:50272771 original size:18 final size:18
Alignment explanation
Indices: 50272748--50272784 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
50272738 AACATCAGAT
50272748 AAGGTTAATCATGTAACC
1 AAGGTTAATCATGTAACC
50272766 AAGGTTAATCATGTAACC
1 AAGGTTAATCATGTAACC
50272784 A
1 A
50272785 GCACTCAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (18 bp):
AAGGTTAATCATGTAACC
Found at i:50276146 original size:15 final size:15
Alignment explanation
Indices: 50276126--50276154 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
50276116 CAAAATAATT
50276126 CCATAAAAATATAAA
1 CCATAAAAATATAAA
50276141 CCATAAAAATATAA
1 CCATAAAAATATAA
50276155 TAAAAATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.21
Consensus pattern (15 bp):
CCATAAAAATATAAA
Found at i:50282309 original size:28 final size:28
Alignment explanation
Indices: 50282251--50282366 Score: 146
Period size: 28 Copynumber: 4.2 Consensus size: 28
50282241 AGCATGGCTG
* *
50282251 CCAG-AACAGATA-TTGTGACAGAGTCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
* * * *
50282277 CCAGATACAGATAATCGTGGCAGGGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
**
50282305 CCAGAAACAGATATTTGTGATAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
50282333 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
50282361 CCAGAA
1 CCAGAA
50282367 CGCTTCCTCC
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
26 4 0.05
27 7 0.09
28 64 0.85
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCAGAGCCA
Found at i:50282335 original size:56 final size:55
Alignment explanation
Indices: 50282251--50282366 Score: 162
Period size: 56 Copynumber: 2.1 Consensus size: 55
50282241 AGCATGGCTG
* * *
50282251 CCAG-AACAGATATTGTGACAGAGTCACCAGATACAGATAATCGTGGCAGGGCCA
1 CCAGAAACAGATATTGTGACAGAGCCACCAGAAACAGATAATCGTGGCAGAGCCA
* * *
50282305 CCAGAAACAGATATTTGTGATAGAGCCACCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATA-TTGTGACAGAGCCACCAGAAACAGATAATCGTGGCAGAGCCA
50282361 CCAGAA
1 CCAGAA
50282367 CGCTTCCTCC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 4 0.07
55 8 0.15
56 42 0.78
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (55 bp):
CCAGAAACAGATATTGTGACAGAGCCACCAGAAACAGATAATCGTGGCAGAGCCA
Found at i:50283642 original size:18 final size:18
Alignment explanation
Indices: 50283595--50283651 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
50283585 TGCTATAGAG
50283595 GAAAAGAAGAAGA-AGAA
1 GAAAAGAAGAAGAGAGAA
* *
50283612 GAAATAGATGAAGAGAGGA
1 GAAA-AGAAGAAGAGAGAA
*
50283631 GAAAAGAAGAAGAGAAAA
1 GAAAAGAAGAAGAGAGAA
50283649 GAA
1 GAA
50283652 TTGTCAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
17 4 0.12
18 22 0.67
19 7 0.21
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.04
Consensus pattern (18 bp):
GAAAAGAAGAAGAGAGAA
Found at i:50288347 original size:50 final size:50
Alignment explanation
Indices: 50288228--50288523 Score: 220
Period size: 50 Copynumber: 5.9 Consensus size: 50
50288218 ATTGTGAGAA
* * *** *
50288228 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGT
* * *
50288280 CACGTGGGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * * * *
50288330 CGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCTGAAAACTTCA-GT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAGTT-AGGT
** * * ** *
50288381 CATGTGTGTAGTACTAAGTGTAGGCTACTACATGTATTAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
*** * * *
50288431 CATGCGTGTAGTACTAAGTGGAGGCTACTACGTGTA-CTGAATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAGTTAGGT
* * * * *
50288480 CGCATGTGTAGTATTAAGTGCAGGCTACTATGCGTACTAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
50288524 CTTCGGTTAC
Statistics
Matches: 189, Mismatches: 50, Indels: 13
0.75 0.20 0.05
Matches are distributed among these distances:
49 36 0.19
50 82 0.43
51 35 0.19
52 36 0.19
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:50288431 original size:101 final size:100
Alignment explanation
Indices: 50288278--50288460 Score: 242
Period size: 101 Copynumber: 1.8 Consensus size: 100
50288268 ATGGTTTTAG
*
50288278 GTCACGTGGGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAGTTAGGTCGCAT-GTGTAGT
1 GTCACGTGGGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTAGGT--CATCGTGTAGT
50288342 ACTAAGTGCAAGCTACTATGCGTACCTGAAAACTTCA
64 ACTAAGTGCAAGCTACTATGCGTACCTGAAAACTTCA
* * * * ** *
50288379 GTCATGTGTGTAGTACTAAGTGTAGGCTACTACATGTATTAGATGGTTAGGTCATGCGTGTAGTA
1 GTCACGTGGGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTAGGTCAT-CGTGTAGTA
* *
50288444 CTAAGTGGAGGCTACTA
65 CTAAGTGCAAGCTACTA
50288461 CGTGTACTGA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
99 3 0.04
101 67 0.96
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (100 bp):
GTCACGTGGGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTAGGTCATCGTGTAGTAC
TAAGTGCAAGCTACTATGCGTACCTGAAAACTTCA
Found at i:50298895 original size:46 final size:45
Alignment explanation
Indices: 50298728--50298903 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 45
50298718 TGTAACCCGC
* * ** * *
50298728 CCATAAGCGAACTCGAACTCAACTCAACGAGCCCGGGCATTCGAAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCG-AT
** * * * *
50298774 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAAATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGAT
* * *
50298820 ACATTTCA-TGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCG-AT
*
50298867 CCATAAGTAAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50298904 TGCCAAAATA
Statistics
Matches: 100, Mismatches: 25, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
45 2 0.02
46 63 0.63
47 33 0.33
48 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGAT
Found at i:50300789 original size:17 final size:17
Alignment explanation
Indices: 50300764--50300797 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
50300754 GATAAGTACA
*
50300764 TATTGTCATTGCATTTT
1 TATTGTCATTACATTTT
*
50300781 TATTTTCATTACATTTT
1 TATTGTCATTACATTTT
50300798 CATGTTAGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.06, T:0.62
Consensus pattern (17 bp):
TATTGTCATTACATTTT
Found at i:50312922 original size:40 final size:40
Alignment explanation
Indices: 50312878--50313105 Score: 352
Period size: 40 Copynumber: 5.7 Consensus size: 40
50312868 GCTACTTGTT
50312878 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
50312918 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
50312958 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
50312998 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
50313038 CAAATGCCTTTGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* *
50313077 CAAATGCGTTCGGGACTTAGCCCAGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
50313106 CATCCGAATA
Statistics
Matches: 174, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 32 0.18
40 140 0.80
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:50317544 original size:20 final size:20
Alignment explanation
Indices: 50317516--50317554 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50317506 ATATGTGCTT
*
50317516 ATATGGATGAATTACTGTTG
1 ATATAGATGAATTACTGTTG
*
50317536 ATATAGATGCATTACTGTT
1 ATATAGATGAATTACTGTT
50317555 ATTACTGATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (20 bp):
ATATAGATGAATTACTGTTG
Found at i:50319344 original size:48 final size:48
Alignment explanation
Indices: 50319217--50319344 Score: 116
Period size: 48 Copynumber: 2.7 Consensus size: 48
50319207 GAGATAAGGT
* * * ** *
50319217 CTCGTGTAAGACTATGTTTGGGACATGGCATTGGCATCGATATGAGAC
1 CTCGTATAAGACCATGTCTGGGACATGGCATCAGCATCGAGATGAGAC
* ** * * *
50319265 CTCGTATACA-ACCATATCTAAGATATAGCATCAGCATCGAGATGAGGC
1 CTCGTATA-AGACCATGTCTGGGACATGGCATCAGCATCGAGATGAGAC
50319313 C-CTGTATAAGACCATGTCTGGGACATGGCATC
1 CTC-GTATAAGACCATGTCTGGGACATGGCATC
50319345 GACACCGATA
Statistics
Matches: 60, Mismatches: 17, Indels: 6
0.72 0.20 0.07
Matches are distributed among these distances:
47 2 0.03
48 57 0.95
49 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (48 bp):
CTCGTATAAGACCATGTCTGGGACATGGCATCAGCATCGAGATGAGAC
Found at i:50319673 original size:48 final size:48
Alignment explanation
Indices: 50319602--50319880 Score: 337
Period size: 48 Copynumber: 5.9 Consensus size: 48
50319592 ATGAGATCCT
*
50319602 GTGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGAGCCA
* * * *
50319650 GTGTAATACCATATCTGGGACATGGCATCGGCGTTGATATGTAAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGAGCCA
* * * *
50319698 ATGTAAGA-C-TGTCTAGGACATGGTATTAGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGAGCCA
* * *
50319744 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGAGCCA
** *** * *
50319792 GTGTAAGACCATGTCTGGGACATGGCATTGGCCCGGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGAGCCA
* * * *
50319840 GTGTAAGACCATGTTTGGGACGTGGCATTAGCATTGATATG
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATG
50319881 AGATTTTGTA
Statistics
Matches: 194, Mismatches: 35, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
46 38 0.20
47 2 0.01
48 154 0.79
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGAGCCA
Found at i:50319774 original size:94 final size:96
Alignment explanation
Indices: 50319603--50319867 Score: 354
Period size: 94 Copynumber: 2.8 Consensus size: 96
50319593 TGAGATCCTG
* * * *
50319603 TGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGAGCCAGTGTAATACCATATCTGG
1 TGTAAGACCATGTCTGGGACATGGCATTAGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTGG
50319668 GACATGGCATCGGCGTTGATATGTAAGCCAA
66 GACATGGCATCGGCGTTGATATGTAAGCCAA
* *
50319699 TGTAAGA-C-TGTCTAGGACATGGTATTAGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATTAGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTGG
* * * *
50319762 GACATGGCATCGGTGTTGATATGTGAGCTAG
66 GACATGGCATCGGCGTTGATATGTAAGCCAA
* *** * * *
50319793 TGTAAGACCATGTCTGGGACATGGCATTGGCCCGGATATATGTGCCAGTGTAAGACCATGTTTGG
1 TGTAAGACCATGTCTGGGACATGGCATTAGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTGG
*
50319858 GACGTGGCAT
66 GACATGGCAT
50319868 TAGCATTGAT
Statistics
Matches: 147, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
94 83 0.56
95 2 0.01
96 62 0.42
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATTAGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCGTTGATATGTAAGCCAA
Found at i:50321810 original size:17 final size:18
Alignment explanation
Indices: 50321788--50321825 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
50321778 TGATCCTCCA
50321788 AAATAAGA-AAATTTTCT
1 AAATAAGATAAATTTTCT
* *
50321805 AAATAATATGAATTTTCT
1 AAATAAGATAAATTTTCT
50321823 AAA
1 AAA
50321826 AATTCTCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (18 bp):
AAATAAGATAAATTTTCT
Found at i:50328202 original size:28 final size:30
Alignment explanation
Indices: 50328151--50328214 Score: 89
Period size: 28 Copynumber: 2.2 Consensus size: 30
50328141 GTGACAGAGT
*
50328151 CACCAGATACAGATATTTTTGTGGCAGT-GC
1 CACCAGATACAGATATATTTGTGGCA-TAGC
50328181 CACCAGA-ACAGATA-ATTTGTGGCATAGC
1 CACCAGATACAGATATATTTGTGGCATAGC
50328209 CACCAG
1 CACCAG
50328215 GACGCTTCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 1 0.03
28 17 0.53
29 7 0.22
30 7 0.22
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.23
Consensus pattern (30 bp):
CACCAGATACAGATATATTTGTGGCATAGC
Found at i:50328363 original size:28 final size:28
Alignment explanation
Indices: 50328320--50328386 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
50328310 AAATTAACCC
50328320 TAGGGGTATAAAGGTAATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* * *
50328348 TAGGGGTATTATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
50328376 TAGGGGTATAA
1 TAGGGGTATAA
50328387 TAGTGCATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:50329494 original size:5 final size:5
Alignment explanation
Indices: 50329484--50329515 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
50329474 ATGGAGAGAA
*
50329484 AAAAG AAAAG AAAAG AAAAG AAAGG AAAAG AA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AA
50329516 TGGTCAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:50330731 original size:20 final size:20
Alignment explanation
Indices: 50330706--50330749 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
50330696 AATGTTTGTG
50330706 AATGATGTTTATTGATCAAT
1 AATGATGTTTATTGATCAAT
*
50330726 AATGATGTTTATTGATCAGT
1 AATGATGTTTATTGATCAAT
50330746 AATG
1 AATG
50330750 CCTTGTAGCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (20 bp):
AATGATGTTTATTGATCAAT
Found at i:50334970 original size:40 final size:40
Alignment explanation
Indices: 50334912--50335136 Score: 328
Period size: 40 Copynumber: 5.6 Consensus size: 40
50334902 TGGATGATAA
* * *
50334912 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
50334952 CTGGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTATAT
*
50334992 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50335032 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
50335072 CCGGGCTAAGACCCGAAGGCATTTCTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50335112 CTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50335137 AGCAAGTAGT
Statistics
Matches: 167, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 164 0.98
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:50335434 original size:22 final size:21
Alignment explanation
Indices: 50335393--50335435 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
50335383 GAATGTGCAT
50335393 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
50335415 ATATGAATGTTATACC-TTAGC
1 ATATGAA-GTTAT-CCATTAGC
50335436 TGAAACTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 12 0.63
23 5 0.26
24 2 0.11
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:50337442 original size:21 final size:19
Alignment explanation
Indices: 50337418--50337454 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
50337408 TGGTACTTGT
50337418 GGAGCGAGCTTGCAAAGCC
1 GGAGCGAGCTTGCAAAGCC
50337437 -GAG-GAGCTTGCAAAGCC
1 GGAGCGAGCTTGCAAAGCC
50337454 G
1 G
50337455 AGGAGCTCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 14 0.82
18 3 0.18
ACGTcount: A:0.27, C:0.24, G:0.38, T:0.11
Consensus pattern (19 bp):
GGAGCGAGCTTGCAAAGCC
Found at i:50337445 original size:17 final size:17
Alignment explanation
Indices: 50337423--50337461 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
50337413 CTTGTGGAGC
50337423 GAGCTTGCAAAGCCGAG
1 GAGCTTGCAAAGCCGAG
50337440 GAGCTTGCAAAGCCGAG
1 GAGCTTGCAAAGCCGAG
50337457 GAGCT
1 GAGCT
50337462 CAGTATGGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.36, T:0.13
Consensus pattern (17 bp):
GAGCTTGCAAAGCCGAG
Found at i:50340075 original size:28 final size:28
Alignment explanation
Indices: 50340043--50340170 Score: 157
Period size: 29 Copynumber: 4.5 Consensus size: 28
50340033 ATAGTAAGTC
*
50340043 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
50340071 CGCACACTTAGTGATTACATAATCAAACT
1 CGCACACTTAGTG-CTATATAATCAAACT
50340100 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * ** * *
50340128 TGTACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50340157 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50340171 CAATCTCATG
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 43 0.49
29 44 0.51
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50340101 original size:29 final size:28
Alignment explanation
Indices: 50340043--50340169 Score: 155
Period size: 28 Copynumber: 4.5 Consensus size: 28
50340033 ATAGTAAGTC
50340043 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGTTATATAATCAAACT
*
50340071 CGCACACTTAGTGATTACATAATCAAACT
1 CGCACACTTAGTG-TTATATAATCAAACT
*
50340100 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGTTATATAATCAAACT
* * * ** * *
50340128 TGTACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGTTATATAA-TCAAACT
50340157 CGCACACTTAGTG
1 CGCACACTTAGTG
50340170 CCAATCTCAT
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 43 0.50
29 43 0.50
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGTTATATAATCAAACT
Found at i:50340161 original size:57 final size:57
Alignment explanation
Indices: 50340042--50340170 Score: 170
Period size: 57 Copynumber: 2.3 Consensus size: 57
50340032 TATAGTAAGT
*
50340042 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGATTACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGATTACATAATCAAAC
* * * * * * *
50340099 TCGCACACTTAGTGCTATATAATCAAACTTGTACACTTAGTGCTATGCA-ATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGAT-TACATAATCAAAC
50340156 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
50340171 CAATCTCATG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
57 59 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGATTACATAATCAAAC
Found at i:50346280 original size:40 final size:40
Alignment explanation
Indices: 50346213--50346437 Score: 298
Period size: 40 Copynumber: 5.6 Consensus size: 40
50346203 TGGATGATAA
* *
50346213 CCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
* *
50346253 CTGGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCTAGTTACTATAT
*
50346293 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
* *
50346333 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
50346373 CCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTAT-AT
50346414 -CGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50346438 AGCAAGTAGT
Statistics
Matches: 164, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 1 0.01
40 159 0.97
41 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:50346349 original size:80 final size:80
Alignment explanation
Indices: 50346213--50346437 Score: 330
Period size: 80 Copynumber: 2.8 Consensus size: 80
50346203 TGGATGATAA
* * * *
50346213 CCGGGTTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATTCTGGGCTAAG-CTCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA-ACCGGGCTAAGTC-CCGAAGGCAT
*
50346275 TTGTGCGAGTTACTATAT
63 TTGTACGAGTTACTATAT
*
50346293 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATACCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
50346358 TACGAGTTACTATAT
66 TACGAGTTACTATAT
* *
50346373 CCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTACTATAATCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
50346438 AGCAAGTAGT
Statistics
Matches: 134, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
79 1 0.01
80 131 0.98
81 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TACGAGTTACTATAT
Found at i:50346426 original size:120 final size:120
Alignment explanation
Indices: 50346213--50346437 Score: 348
Period size: 120 Copynumber: 1.9 Consensus size: 120
50346203 TGGATGATAA
* * * *
50346213 CCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGCTCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTGACTAATTCCGGGCTAAGCTCCGAAGGCATTTG
50346278 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAC
66 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAC
*
50346333 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT-ATATCCGGGCTAAGAC-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTGACTAAT-TCCGGGCTAAG-CTCCGAAGGCATT
*
50346396 TGTGTGAGTTACTATAAT-CGGGCTAAGTCCCGAAGGCATTTG
64 TGTGCGAGTTACTAT-ATCCGGGCTAAGTCCCGAAGGCATTTG
50346438 AGCAAGTAGT
Statistics
Matches: 96, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
119 2 0.02
120 91 0.95
121 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTGACTAATTCCGGGCTAAGCTCCGAAGGCATTTG
TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAC
Found at i:50346736 original size:22 final size:21
Alignment explanation
Indices: 50346695--50346738 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
50346685 GAATGTGCAT
50346695 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
50346717 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
50346739 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:50355351 original size:22 final size:22
Alignment explanation
Indices: 50355245--50355405 Score: 130
Period size: 22 Copynumber: 7.1 Consensus size: 22
50355235 TATTGATATA
*
50355245 TCAGCTCG-TAAGAGCTTGCTGTTT
1 TCAGCTCGAT-AGAGCTTACTG--T
* *
50355269 TCAGCTC-ATTGAAGCTTACCGTT
1 TCAGCTCGATAG-AGCTTACTG-T
* *
50355292 TCAACTCG-TATGAGCTTACTAT
1 TCAGCTCGATA-GAGCTTACTGT
* *
50355314 TCACACTCAATAGAGCTTACTGT
1 TCA-GCTCGATAGAGCTTACTGT
*
50355337 TTAGCTCGATAGAGCTTACTGT
1 TCAGCTCGATAGAGCTTACTGT
* * *
50355359 TCAACTTGATAGAGCTTACTAT
1 TCAGCTCGATAGAGCTTACTGT
*
50355381 TCAGCTCAATAGAGCTTACTGT
1 TCAGCTCGATAGAGCTTACTGT
50355403 TCA
1 TCA
50355406 TCAGCTTAAG
Statistics
Matches: 111, Mismatches: 20, Indels: 14
0.77 0.14 0.10
Matches are distributed among these distances:
22 60 0.54
23 33 0.30
24 18 0.16
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.35
Consensus pattern (22 bp):
TCAGCTCGATAGAGCTTACTGT
Found at i:50355375 original size:44 final size:45
Alignment explanation
Indices: 50355281--50355405 Score: 146
Period size: 44 Copynumber: 2.8 Consensus size: 45
50355271 AGCTCATTGA
* * *
50355281 AGCTTACCGTTTCAACTCG-TATGAGCTTACTATTCACACTCAATAG
1 AGCTTACTGTTT-AGCTCGATA-GAGCTTACTGTTCACACTCAATAG
**
50355327 AGCTTACTGTTTAGCTCGATAGAGCTTACTGTTCA-ACTTGATAG
1 AGCTTACTGTTTAGCTCGATAGAGCTTACTGTTCACACTCAATAG
* * *
50355371 AGCTTACTATTCAGCTCAATAGAGCTTACTGTTCA
1 AGCTTACTGTTTAGCTCGATAGAGCTTACTGTTCA
50355406 TCAGCTTAAG
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
44 39 0.56
45 18 0.26
46 13 0.19
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.34
Consensus pattern (45 bp):
AGCTTACTGTTTAGCTCGATAGAGCTTACTGTTCACACTCAATAG
Found at i:50355604 original size:20 final size:19
Alignment explanation
Indices: 50355579--50355656 Score: 75
Period size: 20 Copynumber: 3.9 Consensus size: 19
50355569 TGTTTATAGG
*
50355579 GATGAATTACTATTGATACA
1 GATGAACTACTATT-ATACA
* *
50355599 GATGAATTACTATTATTACT
1 GATGAACTACTATTA-TACA
* *
50355619 GATAAACTACTGTTTATACA
1 GATGAACTACT-ATTATACA
50355639 GATGAACTACTAGTTATA
1 GATGAACTACTA-TTATA
50355657 TGAATGAATT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
19 1 0.02
20 44 0.92
21 3 0.06
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (19 bp):
GATGAACTACTATTATACA
Found at i:50355674 original size:40 final size:40
Alignment explanation
Indices: 50355579--50355678 Score: 107
Period size: 40 Copynumber: 2.5 Consensus size: 40
50355569 TGTTTATAGG
* *
50355579 GATGAATTACTA-TTGATACAGATGAATTACTATTATTACT
1 GATGAATTAC-AGTTTATACAGATGAACTACTATTATTACT
* * *
50355619 GATAAACTACTGTTTATACAGATGAACTACTAGTTA-TA-T
1 GATGAATTACAGTTTATACAGATGAACTACTA-TTATTACT
50355658 GAATGAATTACAGTTTATACA
1 G-ATGAATTACAGTTTATACA
50355679 AATAGAAATG
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
39 2 0.04
40 44 0.90
41 3 0.06
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (40 bp):
GATGAATTACAGTTTATACAGATGAACTACTATTATTACT
Found at i:50360199 original size:15 final size:16
Alignment explanation
Indices: 50360181--50360218 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
50360171 AATTGGAAAG
50360181 ATGAAAATTT-ATTAA
1 ATGAAAATTTAATTAA
*
50360196 ATGACAATTTAATTAA
1 ATGAAAATTTAATTAA
50360212 ATGAAAA
1 ATGAAAA
50360219 AGAACACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.34
Consensus pattern (16 bp):
ATGAAAATTTAATTAA
Found at i:50364425 original size:48 final size:48
Alignment explanation
Indices: 50364363--50364685 Score: 251
Period size: 48 Copynumber: 6.7 Consensus size: 48
50364353 GATATGTGTA
* *
50364363 CCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCGCAATATGAGGG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCGCAATATGAGAG
** *
50364411 CCAGTGTAAGACCATGTCTGGGACATGGTGTCGTCCGCAATATGA-AGG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCGCAATATGAGA-G
** * * * *
50364459 CCAGTGTAATTCCATGTTTGGAACATGGCATCG---GCAATGTTGTGTAAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCGCAAT-ATGAG--AG
* * * *
50364507 CCAATGTAAGACCATGTCTGGGACATGGCATCAACCACATTATGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCGCAATATGAGAG
* * * * **** *
50364555 CCAGCGTAGGACCATGTCTGGGACATAGCATCGGCATTGAGACT-AGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCGCAATA-TGAGAG
* * * * * * *
50364603 CTAGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCGCAATATGAGAG
* * * *
50364651 CCAATGTAAGACCATGTTTAGAACATGGCATCGAC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
50364686 AATTCACCCT
Statistics
Matches: 216, Mismatches: 49, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
45 5 0.02
46 2 0.01
47 1 0.00
48 200 0.93
49 2 0.01
50 3 0.01
51 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.23
Consensus pattern (48 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCGCAATATGAGAG
Found at i:50364629 original size:144 final size:143
Alignment explanation
Indices: 50364367--50364682 Score: 334
Period size: 144 Copynumber: 2.2 Consensus size: 143
50364357 TGTGTACCAG
* * * * *
50364367 TGTAAGACCATGTCTGGGACATGGCGTCGACCGCAATATGAGGGCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCAACCACAATATGAGAGCCAGCGTAAGACCATGTCTGG
* * ** *
50364432 GACATGGTGTCGTCCGCAATATGAAGGCCAGTGTAATTCCATGTTTGGAACATGGCATCGGCAAT
66 GACAT-GAGTCATCCGCAATATGAAGGCCAGTGTAAAACCATGTCTGGAACATGGCATCGGC-AT
***
50364497 -GTTGTGTAAGCCAA
129 CGACATGTAAGCCAA
* *
50364511 TGTAAGACCATGTCTGGGACATGGCATCAACCACATTATGAGAGCCAGCGTAGGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCAACCACAATATGAGAGCCAGCGTAAGACCATGTCTGG
* * * *
50364576 GACAT-AG-CATCGGCATTGA-GACTAGAGCTAGTGTAAAACCATGTCTGGGACATGGCATCGGC
66 GACATGAGTCATCCGCAAT-ATGA--AG-GCCAGTGTAAAACCATGTCTGGAACATGGCATCGGC
* *
50364638 CTCGACATGTGAGCCAA
127 ATCGACATGTAAGCCAA
* * *
50364655 TGTAAGACCATGTTTAGAACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
50364683 GACAATTCAC
Statistics
Matches: 143, Mismatches: 24, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
141 9 0.06
142 2 0.01
143 3 0.02
144 129 0.90
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (143 bp):
TGTAAGACCATGTCTGGGACATGGCATCAACCACAATATGAGAGCCAGCGTAAGACCATGTCTGG
GACATGAGTCATCCGCAATATGAAGGCCAGTGTAAAACCATGTCTGGAACATGGCATCGGCATCG
ACATGTAAGCCAA
Found at i:50367061 original size:12 final size:12
Alignment explanation
Indices: 50367037--50367088 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
50367027 AAGAAACATT
50367037 ATCAAAA-CTAGA
1 ATCAAAATC-AGA
*
50367049 ATCAAAATGAGA
1 ATCAAAATCAGA
* *
50367061 ATTAGAATCAGA
1 ATCAAAATCAGA
*
50367073 ATCAGAATCAGA
1 ATCAAAATCAGA
50367085 ATCA
1 ATCA
50367089 GAATACAGCC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.54, C:0.13, G:0.13, T:0.19
Consensus pattern (12 bp):
ATCAAAATCAGA
Found at i:50367073 original size:6 final size:6
Alignment explanation
Indices: 50367046--50367092 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
50367036 TATCAAAACT
* * *
50367046 AGAATC AAAATG AGAATT AGAATC AGAATC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT
50367093 ACAGCCCATA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:50367291 original size:27 final size:26
Alignment explanation
Indices: 50367254--50367368 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
50367244 AGCATGGCTG
* *
50367254 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
50367280 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* *
50367307 CCAGAACAGATATTTATGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
*
50367334 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
*
50367362 CTAGAAC
1 CCAGAAC
50367369 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 12 0.15
27 43 0.54
28 25 0.31
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:50367582 original size:27 final size:26
Alignment explanation
Indices: 50367520--50367583 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
50367510 CAGTCACTTT
*
50367520 CCCCCAAGGGCAAAATAGTCATTTAA
1 CCCCCAAGGGCAAAATAGTAATTTAA
* * *
50367546 CACCCTAAGGGCAAAATGGTAATTTTA
1 C-CCCCAAGGGCAAAATAGTAATTTAA
50367573 CCCCACAAGGG
1 CCCC-CAAGGG
50367584 TATCTCGGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.36, C:0.27, G:0.19, T:0.19
Consensus pattern (26 bp):
CCCCCAAGGGCAAAATAGTAATTTAA
Found at i:50367691 original size:81 final size:81
Alignment explanation
Indices: 50367563--50367886 Score: 479
Period size: 81 Copynumber: 4.0 Consensus size: 81
50367553 AGGGCAAAAT
* * * * * *
50367563 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTAC
1 GGTAATTCTACCCCACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTAC
50367628 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* *
50367644 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGATATTTCTAC
1 GGTAATTCTACCCCACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTAC
50367709 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * *
50367725 GGTAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 GGTAATTCTACCCCACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTAC
50367790 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * * * *
50367806 GATAATTCTACCCCATAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAATAATTT-TG
1 GGTAATTCTACCCCACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGAT-ATTTCTA
*
50367870 CCCTACAGGGGTATTTC
65 CCCTACAAGGGTATTTC
50367887 AATAATTTTG
Statistics
Matches: 222, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
81 218 0.98
82 4 0.02
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (81 bp):
GGTAATTCTACCCCACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTAC
CCTACAAGGGTATTTC
Found at i:50367896 original size:27 final size:27
Alignment explanation
Indices: 50367563--50367886 Score: 423
Period size: 27 Copynumber: 12.0 Consensus size: 27
50367553 AGGGCAAAAT
* * * *
50367563 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50367590 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50367617 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
50367644 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50367671 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
50367698 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50367725 GGTAATTCTACCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
50367752 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
50367779 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
50367806 GATAATTCTACCCCATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
50367833 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
50367860 AATAATTTTGCCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
50367887 AATAATTTTG
Statistics
Matches: 261, Mismatches: 36, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 261 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:50369619 original size:27 final size:27
Alignment explanation
Indices: 50369588--50369682 Score: 95
Period size: 27 Copynumber: 3.5 Consensus size: 27
50369578 TTAGTTTACC
* *
50369588 AAATTACTGAAATACCTCCGACTTGTA
1 AAATTACTCAAATACCTCCGATTTGTA
* *
50369615 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTCAAA-TACCTCCGATTTGTA
*
50369642 AAATTACCCAAATATCCT-CGATTTGTA
1 AAATTACTCAAATA-CCTCCGATTTGTA
* *
50369669 AAATCACTGAAATA
1 AAATTACTCAAATA
50369683 AGATAGAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.05
27 47 0.84
28 6 0.11
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTACTCAAATACCTCCGATTTGTA
Found at i:50369917 original size:27 final size:27
Alignment explanation
Indices: 50369685--50369901 Score: 371
Period size: 27 Copynumber: 8.0 Consensus size: 27
50369675 CTGAAATAAG
*
50369685 ATAGAATTACCATTTTACCATCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* * *
50369712 ACAGAATTACCGTTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
50369739 ACAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
50369766 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
50369793 ATAGAATTACTATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
50369820 ATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
50369847 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
50369874 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
50369901 A
1 A
50369902 CAAAATTATT
Statistics
Matches: 179, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 179 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
ATAGAATTACCATTTTACCCTCGATTT
Found at i:50369926 original size:27 final size:27
Alignment explanation
Indices: 50369697--50369939 Score: 180
Period size: 27 Copynumber: 9.0 Consensus size: 27
50369687 AGAATTACCA
* * **
50369697 TTTTACCATCGATTTACAGAATTACCG
1 TTTTACCCTCGATTTACAAAATTATTG
* * ***
50369724 TTTTACCCTCAATTTACAGAATTACCA
1 TTTTACCCTCGATTTACAAAATTATTG
* * ***
50369751 TTTTACCCTCGATTTATAGAATTACCA
1 TTTTACCCTCGATTTACAAAATTATTG
* * * *
50369778 TTTTACCCTCGATTTATAGAATTACTA
1 TTTTACCCTCGATTTACAAAATTATTG
* * **
50369805 TTTTACCCTCGATTTATAGAATTACCG
1 TTTTACCCTCGATTTACAAAATTATTG
* * ***
50369832 TTTTACCCTCGATTTATAGAATTACCA
1 TTTTACCCTCGATTTACAAAATTATTG
* * ***
50369859 TTTTACCCTCGATTTATAGAATTACCA
1 TTTTACCCTCGATTTACAAAATTATTG
50369886 TTTTACCCTCGATTTACAAAATTATTG
1 TTTTACCCTCGATTTACAAAATTATTG
* *
50369913 TTTTATCCTTGATTTACAAAATTATTG
1 TTTTACCCTCGATTTACAAAATTATTG
50369940 AAATACCCTT
Statistics
Matches: 200, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 200 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAAAATTATTG
Found at i:50369948 original size:81 final size:81
Alignment explanation
Indices: 50369685--50369928 Score: 380
Period size: 81 Copynumber: 3.0 Consensus size: 81
50369675 CTGAAATAAG
* * * *
50369685 ATAGAATTACCATTTTACCATCGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACC
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACC
*
50369750 ATTTTACCCTCGATTT
66 GTTTTACCCTCGATTT
* *
50369766 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACC
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACC
50369831 GTTTTACCCTCGATTT
66 GTTTTACCCTCGATTT
* **
50369847 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTATT
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACC
* *
50369912 GTTTTATCCTTGATTT
66 GTTTTACCCTCGATTT
50369928 A
1 A
50369929 CAAAATTATT
Statistics
Matches: 149, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 149 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACC
GTTTTACCCTCGATTT
Found at i:50369949 original size:27 final size:27
Alignment explanation
Indices: 50369889--50369963 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
50369879 ATTACCATTT
* ***
50369889 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTTGATTTACAAAATTATTGAAA
*
50369916 TATCCTTGATTTACAAAATTATTGAAA
1 TACCCTTGATTTACAAAATTATTGAAA
50369943 TACCCTT-AGTTTACAAAATTA
1 TACCCTTGA-TTTACAAAATTA
50369964 CCAAAATACC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.02
27 40 0.98
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTATTGAAA
Found at i:50369970 original size:27 final size:27
Alignment explanation
Indices: 50369925--50370084 Score: 142
Period size: 27 Copynumber: 5.9 Consensus size: 27
50369915 TTATCCTTGA
* * * * *
50369925 TTTACAAAATTATTGAAATACCCTTAG
1 TTTATAAAATTACTAAAATACCCCTGG
* * *
50369952 TTTACAAAATTACCAAAATA-CCCTCG
1 TTTATAAAATTACTAAAATACCCCTGG
* * *
50369978 ATCATTAAAATTACCAAAATACCCCTGG
1 TTTA-TAAAATTACTAAAATACCCCTGG
*
50370006 TTTGTAAAATTACTAAAATACCCCTGG
1 TTTATAAAATTACTAAAATACCCCTGG
* *
50370033 TTTGTAAAATTACTAAAATACCCCTGA
1 TTTATAAAATTACTAAAATACCCCTGG
* * **
50370060 CTTGTAAAATTACCGAAATACCCCT
1 TTTATAAAATTACTAAAATACCCCT
50370085 ATAGGGTAAA
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 6 0.05
27 102 0.89
28 6 0.05
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31
Consensus pattern (27 bp):
TTTATAAAATTACTAAAATACCCCTGG
Found at i:50370015 original size:81 final size:81
Alignment explanation
Indices: 50369930--50370191 Score: 205
Period size: 81 Copynumber: 3.2 Consensus size: 81
50369920 CTTGATTTAC
50369930 AAAATTATTGAAATACCCTTAGTTTACAAAATTACCAAAATA-CCCTCGATCAT-TAAAATTACC
1 AAAATTATTGAAATACCCTTAGTTTACAAAATTACCAAAATACCCCT-GA-CATGTAAAATTACC
* **
50369993 AAAATACCCCTGGT-TTGT
64 AAAATACCCCT-ATAGGGT
* * * * ** * * *
50370011 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTGACTTGTAAAATTACCGA
1 AAAATTATTGAAATACCCTTAGTTTACAAAATTACCAAAATACCCCTGACATGTAAAATTACCAA
50370076 AATACCCCTATAGGGT
66 AATACCCCTATAGGGT
* * * * ** *
50370092 AAAATTATTGCAATACCCTGTA-TGGT--AGAATTACCGAAATACCCCTGTA-GGGTAGAATTAC
1 AAAATTATTGAAATACCCT-TAGT-TTACAAAATTACCAAAATACCCCTG-ACATGTAAAATTAC
* *
50370153 CGAAATACCCCTGTAGGGT
63 CAAAATACCCCTATAGGGT
* * *
50370172 AGAATTATCGGAATACCCTT
1 AAAATTATTGAAATACCCTT
50370192 GTACGGTAGA
Statistics
Matches: 147, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
79 1 0.01
80 64 0.44
81 76 0.52
82 6 0.04
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.29
Consensus pattern (81 bp):
AAAATTATTGAAATACCCTTAGTTTACAAAATTACCAAAATACCCCTGACATGTAAAATTACCAA
AATACCCCTATAGGGT
Found at i:50370093 original size:27 final size:27
Alignment explanation
Indices: 50370067--50370236 Score: 234
Period size: 27 Copynumber: 6.3 Consensus size: 27
50370057 TGACTTGTAA
* *
50370067 AATTACCGAAATACCCCTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
50370094 AATTATTGCAATA-CCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
50370120 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
50370147 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
50370174 AATTATCGGAATACCCTTGTACGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50370201 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
50370228 AATTACCGA
1 AATTACCGA
50370237 GATAGCTTGT
Statistics
Matches: 122, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 20 0.16
27 102 0.84
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:50370094 original size:54 final size:54
Alignment explanation
Indices: 50369983--50370236 Score: 237
Period size: 54 Copynumber: 4.7 Consensus size: 54
50369973 CCTCGATCAT
** * ** **
50369983 TAAAATTACCAAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCCTGGT-TTG
1 TAAAATTACTGAAATACCCCT-GTATGGTAAAATTACCGAAATACCCCT-GTAGGG
* * *
50370037 TAAAATTACTAAAATACCCCTG-ACTTGTAAAATTACCGAAATACCCCTATAGGG
1 TAAAATTACTGAAATACCCCTGTA-TGGTAAAATTACCGAAATACCCCTGTAGGG
* * *
50370091 TAAAATTATTGCAATA-CCCTGTATGGTAGAATTACCGAAATACCCCTGTAGGG
1 TAAAATTACTGAAATACCCCTGTATGGTAAAATTACCGAAATACCCCTGTAGGG
* * * * * * * *
50370144 TAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGGAATACCCTTGTACGG
1 TAAAATTACTGAAATACCCCTGTATGGTAAAATTACCGAAATACCCCTGTAGGG
* * *
50370198 TAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGA
1 TAAAATTACTGAAATACCCCTGTATGGTAAAATTACCGA
50370237 GATAGCTTGT
Statistics
Matches: 171, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
53 46 0.27
54 125 0.73
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (54 bp):
TAAAATTACTGAAATACCCCTGTATGGTAAAATTACCGAAATACCCCTGTAGGG
Found at i:50370694 original size:6 final size:6
Alignment explanation
Indices: 50370663--50370731 Score: 79
Period size: 6 Copynumber: 11.3 Consensus size: 6
50370653 TTGCATTCAC
* *
50370663 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
50370712 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
50370732 AATGTTTCTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
5 3 0.06
6 46 0.85
7 4 0.07
8 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:50372743 original size:27 final size:26
Alignment explanation
Indices: 50372712--50372806 Score: 93
Period size: 27 Copynumber: 3.5 Consensus size: 26
50372702 TTAGTTTACC
* *
50372712 AAATTACTGAAATACCTTCGACTTGTA
1 AAATTACTCAAATACC-TCGATTTGTA
* *
50372739 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTCAAA-TA-CCTCGATTTGTA
*
50372766 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATA-CCTCGATTTGTA
*
50372793 AAATCACTCAAATA
1 AAATTACTCAAATA
50372807 AGATAGAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.05
27 47 0.84
28 6 0.11
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.29
Consensus pattern (26 bp):
AAATTACTCAAATACCTCGATTTGTA
Found at i:50372851 original size:27 final size:27
Alignment explanation
Indices: 50372811--50372910 Score: 173
Period size: 27 Copynumber: 3.7 Consensus size: 27
50372801 CAAATAAGAT
50372811 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
50372838 AGAATTACCGTTTTACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
50372865 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
50372892 AGAATTACCGTTTTACCCT
1 AGAATTACCATTTTACCCT
50372911 TGTGGGCAAG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.37
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:50373306 original size:6 final size:6
Alignment explanation
Indices: 50373275--50373362 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
50373265 TTGCATTCAC
* *
50373275 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
50373324 -TCACCTA ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
50373363 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:50373313 original size:31 final size:31
Alignment explanation
Indices: 50373275--50373353 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
50373265 TTGCATTCAC
* * * *
50373275 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
*
50373306 ATTCTGATTCTGATTCTGTCACCTAATTCTA
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
50373337 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
50373354 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTA
Found at i:50375883 original size:49 final size:48
Alignment explanation
Indices: 50375803--50375975 Score: 145
Period size: 49 Copynumber: 3.6 Consensus size: 48
50375793 TGTTGTGTGT
* * * *
50375803 CAGTGTAAGACCTGTCTCGGATATGGTATCGATACCAATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAT-CCAATAGATGAAAGC
* * * *
50375852 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGATC-CAATAGATGAAAGC
* * * ** **
50375901 TAGTGTAAGACATG-CTTGGGACACGGCATCGACTTTAAT-G-TGCTAGC
1 CAGTGTAAGACCTGTC-TGGGACATGGCATCGA-TCCAATAGATGAAAGC
50375948 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
50375976 GTCAGCATCT
Statistics
Matches: 97, Mismatches: 22, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
47 14 0.14
48 14 0.14
49 69 0.71
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGATCCAATAGATGAAAGC
Found at i:50380092 original size:16 final size:16
Alignment explanation
Indices: 50380071--50380102 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50380061 TGTGTAACGC
*
50380071 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
50380087 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
50380103 TCCCGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:50384104 original size:8 final size:8
Alignment explanation
Indices: 50384087--50384121 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
50384077 ATGTATCAGT
50384087 AAAAGCCG
1 AAAAGCCG
*
50384095 AAATGCCG
1 AAAAGCCG
50384103 AAAAGCCG
1 AAAAGCCG
50384111 AAAAGCCG
1 AAAAGCCG
50384119 AAA
1 AAA
50384122 GTTTGGCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.51, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:50384387 original size:29 final size:29
Alignment explanation
Indices: 50384346--50384446 Score: 123
Period size: 29 Copynumber: 3.5 Consensus size: 29
50384336 TAATGTGACC
*
50384346 GGGCCTAACGGGCCATATAAATGTGATTT
1 GGGCCTAATGGGCCATATAAATGTGATTT
* * *
50384375 GTGCCTAATGGGCCATATATAGGTGATTT
1 GGGCCTAATGGGCCATATAAATGTGATTT
* * *
50384404 GGGCCTAATAGGCCATATGAATATGA-TT
1 GGGCCTAATGGGCCATATAAATGTGATTT
*
50384432 GGGCTTAATGGGCCA
1 GGGCCTAATGGGCCA
50384447 GATACAGGTA
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
28 15 0.25
29 45 0.75
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (29 bp):
GGGCCTAATGGGCCATATAAATGTGATTT
Found at i:50384418 original size:58 final size:57
Alignment explanation
Indices: 50384346--50384455 Score: 139
Period size: 57 Copynumber: 1.9 Consensus size: 57
50384336 TAATGTGACC
* * * * *
50384346 GGGCCTAACGGGCCATATAAATGTGATTTGTGCCTAATGGGCCATATATAGGTGATTT
1 GGGCCTAACAGGCCATATAAATATGA-TTGGGCCTAATGGGCCAGATACAGGTGATTT
* * *
50384404 GGGCCTAATAGGCCATATGAATATGATTGGGCTTAATGGGCCAGATACAGGT
1 GGGCCTAACAGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGT
50384456 ATGTGAAATT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 22 0.50
58 22 0.50
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (57 bp):
GGGCCTAACAGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGTGATTT
Found at i:50388535 original size:68 final size:65
Alignment explanation
Indices: 50388463--50388634 Score: 168
Period size: 67 Copynumber: 2.6 Consensus size: 65
50388453 CATCATGTGT
* * * * *
50388463 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCTCATGGGTGATACTATGTG-TACACCAT
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGGTGAGACACCAT
50388527 GTAG
62 GTAG
* * *
50388531 ACAAGAGAGCTACGGCATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAACGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGGTG-A-GACACCATGT
50388596 AG
64 AG
* * * *
50388598 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
50388635 GGTGGTACTG
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
64 26 0.30
65 3 0.03
66 16 0.18
67 30 0.34
68 13 0.15
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (65 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGGTGAGACACCATGTAG
Found at i:50392294 original size:28 final size:28
Alignment explanation
Indices: 50392251--50392359 Score: 121
Period size: 29 Copynumber: 3.9 Consensus size: 28
50392241 CATGATTATG
*
50392251 AATGTGATTGGGCCTAACGGG-CATATA
1 AATGTGATTGGGCCTAATGGGCCATATA
50392278 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGA-TTGGGCCTAATGGGCCATATA
* * * *
50392307 CAGGTGATTTGGGCATAATGGGCCATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATA
* * *
50392336 AATATGATTGGGCTTAAAGGGCCA
1 AATGTGATTGGGCCTAATGGGCCA
50392360 GATACAGGTA
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
27 7 0.10
28 28 0.40
29 35 0.50
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATA
Found at i:50392347 original size:57 final size:56
Alignment explanation
Indices: 50392254--50392368 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 56
50392244 GATTATGAAT
* * * *
50392254 GTGATTGGGCCTAACGGGCATATAAATGTGATTTGGGCCTAATGGGCCATATACAG
1 GTGATTGGGCATAACGGGCATATAAATATGATTTGGGCCTAAAGGGCCAGATACAG
* * *
50392310 GTGATTTGGGCATAATGGGCCATATGAATATGA-TTGGGCTTAAAGGGCCAGATACAG
1 GTGA-TTGGGCATAACGGG-CATATAAATATGATTTGGGCCTAAAGGGCCAGATACAG
50392367 GT
1 GT
50392369 ATGTGAAATT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
56 4 0.08
57 35 0.70
58 11 0.22
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (56 bp):
GTGATTGGGCATAACGGGCATATAAATATGATTTGGGCCTAAAGGGCCAGATACAG
Found at i:50397984 original size:42 final size:42
Alignment explanation
Indices: 50397919--50398011 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 42
50397909 TGTCGTTTAC
*
50397919 TTGATGCCATAGTCCAACTATGGTCTTACAC-AAAGTCCCATA
1 TTGATGCCATAGTCCAACTATGGTCTTACACGAAA-TCACATA
50397961 TTGATGCCAT-GTCCCAGAC-ATGGTCTTACACGAAATCACATA
1 TTGATGCCATAGT-CCA-ACTATGGTCTTACACGAAATCACATA
*
50398003 TCGATGCCA
1 TTGATGCCA
50398012 ATGCCATATC
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
41 2 0.04
42 39 0.85
43 5 0.11
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (42 bp):
TTGATGCCATAGTCCAACTATGGTCTTACACGAAATCACATA
Found at i:50398035 original size:48 final size:47
Alignment explanation
Indices: 50397964--50398239 Score: 372
Period size: 48 Copynumber: 5.8 Consensus size: 47
50397954 TCCCATATTG
*
50397964 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACA-GAGATCACATATCGATGCCA
* * * *
50398012 ATGCCATATCCCATATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACA-GAGATCACATATCGATGCCA
* *
50398060 ATGCCATGTCCCAGACATGGTCTTACTGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACAGAGATCACATATCGATGCCA
* * *
50398107 ATGCCATGTCCCAGACATGGTCTTATATAGGATCACATATCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACAGA-GATCACATATCGATGCCA
** *
50398155 ATGTTATGTCCCAGACATGGTCTTACATAGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACAGA-GATCACATATCGATGCCA
* *
50398203 ATGCCATGTACCAGACATGGTCTTACATGGGATCACA
1 ATGCCATGTCCCAGACATGGTCTTACA-GAGATCACA
50398240 ATACCATAGC
Statistics
Matches: 202, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
47 45 0.22
48 157 0.78
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACAGAGATCACATATCGATGCCA
Found at i:50398209 original size:143 final size:144
Alignment explanation
Indices: 50397964--50398239 Score: 430
Period size: 143 Copynumber: 1.9 Consensus size: 144
50397954 TCCCATATTG
* * * *
50397964 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCAATGCCATATCCCATATA
1 ATGCCATGTCCCAGACATGGTCTTACAAGAAATCACATATCAATGCCAATGCCATATCCCAGACA
* *
50398029 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTAC-TGGGATC
66 TGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTACCAGACATGGTCTTACATGGGATC
50398093 ACATATCGATGCCA
131 ACATATCGATGCCA
* * ** *
50398107 ATGCCATGTCCCAGACATGGTCTTATATAG-GATCACATATCAATGCCAATGTTATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACA-AGAAATCACATATCAATGCCAATGCCATATCCCAGAC
50398171 ATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTACCAGACATGGTCTTACATGGGAT
65 ATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTACCAGACATGGTCTTACATGGGAT
50398236 CACA
130 CACA
50398240 ATACCATAGC
Statistics
Matches: 120, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
143 109 0.91
144 11 0.09
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTCTTACAAGAAATCACATATCAATGCCAATGCCATATCCCAGACA
TGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTACCAGACATGGTCTTACATGGGATC
ACATATCGATGCCA
Found at i:50399243 original size:20 final size:20
Alignment explanation
Indices: 50399218--50399261 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
50399208 AATAGAGGTC
*
50399218 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTAGG
*
50399238 ACACGCCTGTGTGCTTTAGG
1 ACACGCCCGTGTGCTTTAGG
50399258 ACAC
1 ACAC
50399262 ACTCGTGTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.25
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTTAGG
Found at i:50399269 original size:20 final size:19
Alignment explanation
Indices: 50399224--50399270 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
50399214 GGTCACACGC
* *
50399224 CCGTGTGCTTTGGGACACG
1 CCGTGTGCTTTAGGACACA
50399243 CCTGTGTGCTTTAGGACACA
1 CC-GTGTGCTTTAGGACACA
50399263 CTCGTGTG
1 C-CGTGTG
50399271 GGTAGGCCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.88
21 1 0.04
ACGTcount: A:0.13, C:0.26, G:0.32, T:0.30
Consensus pattern (19 bp):
CCGTGTGCTTTAGGACACA
Found at i:50400961 original size:43 final size:43
Alignment explanation
Indices: 50400796--50400991 Score: 182
Period size: 43 Copynumber: 4.6 Consensus size: 43
50400786 TCGTACAATA
* * * *
50400796 CCAATGTCCTAGATGTGGTCTTACATGTAATC-AAATATCGATA
1 CCAATGTCCCAGACGTGGTCTTACATGTAATCTCAA-ATCGATG
* * * * * ** *
50400839 CCACTATCCCAGCCATGGTCTTACA--CAAAATCAGATACGATG
1 CCAATGTCCCAGACGTGGTCTTACATGTAATCTCAAAT-CGATG
* * *
50400881 CCGATGTCCCAGACATGGTCTTACATGTAATCCCAAATCGATG
1 CCAATGTCCCAGACGTGGTCTTACATGTAATCTCAAATCGATG
* *
50400924 CCAATGTCCTAGATGTGGTCTTACATGTAATCTCAAATCGATG
1 CCAATGTCCCAGACGTGGTCTTACATGTAATCTCAAATCGATG
* *
50400967 CCAACGTCCCAAACGTGGTCTTACA
1 CCAATGTCCCAGACGTGGTCTTACA
50400992 CAAAATCACA
Statistics
Matches: 119, Mismatches: 30, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
41 4 0.03
42 26 0.22
43 83 0.70
44 6 0.05
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
CCAATGTCCCAGACGTGGTCTTACATGTAATCTCAAATCGATG
Found at i:50408870 original size:33 final size:33
Alignment explanation
Indices: 50408830--50408895 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
50408820 AAATCACTCC
*
50408830 ATATACACATATTTAGGGCATTTCACAAATTAT
1 ATATACACATATTTAAGGCATTTCACAAATTAT
50408863 ATATACACATATTTAAGGCATTTCACAAATTAT
1 ATATACACATATTTAAGGCATTTCACAAATTAT
50408896 CTCTCATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (33 bp):
ATATACACATATTTAAGGCATTTCACAAATTAT
Found at i:50423483 original size:20 final size:21
Alignment explanation
Indices: 50423448--50423486 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
50423438 ATAATAGTTT
50423448 AATAATAAAAACAAAGAAATA
1 AATAATAAAAACAAAGAAATA
*
50423469 AATAA-AAAAAGAAAGAAA
1 AATAATAAAAACAAAGAAA
50423487 GGGAGAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.79, C:0.03, G:0.08, T:0.10
Consensus pattern (21 bp):
AATAATAAAAACAAAGAAATA
Found at i:50424772 original size:18 final size:18
Alignment explanation
Indices: 50424715--50424774 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
50424705 GACTGTCTGC
* *
50424715 TACTGAATAATTGACTAT
1 TACTGAATAAATGAATAT
* *
50424733 TACAGAATAAA-CAAT-T
1 TACTGAATAAATGAATAT
50424749 GATACTGAATAAATGAATAT
1 --TACTGAATAAATGAATAT
50424769 TACTGA
1 TACTGA
50424775 TTAACCGATT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 1 0.03
17 2 0.06
18 25 0.78
19 3 0.09
20 1 0.03
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.32
Consensus pattern (18 bp):
TACTGAATAAATGAATAT
Found at i:50429598 original size:20 final size:21
Alignment explanation
Indices: 50429563--50429601 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
50429553 ATAATAGTTT
50429563 AATAATAAAAACAAAGAAATA
1 AATAATAAAAACAAAGAAATA
*
50429584 AATAA-AAAAAGAAAGAAA
1 AATAATAAAAACAAAGAAA
50429602 GGGAGAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.79, C:0.03, G:0.08, T:0.10
Consensus pattern (21 bp):
AATAATAAAAACAAAGAAATA
Found at i:50430888 original size:18 final size:18
Alignment explanation
Indices: 50430831--50430907 Score: 66
Period size: 18 Copynumber: 4.3 Consensus size: 18
50430821 GACTGTCTGC
* *
50430831 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTAT
* *
50430849 TACAGAATAAACGACTGA-
1 TACTGAATAAATGACT-AT
*
50430867 TACTGAATAAATGAATAT
1 TACTGAATAAATGACTAT
* * *
50430885 TACTGATTAACTGATTAT
1 TACTGAATAAATGACTAT
50430903 TACTG
1 TACTG
50430908 TTGACTGACT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
17 1 0.02
18 46 0.98
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (18 bp):
TACTGAATAAATGACTAT
Found at i:50433217 original size:38 final size:38
Alignment explanation
Indices: 50433174--50433389 Score: 198
Period size: 38 Copynumber: 5.2 Consensus size: 38
50433164 TTTCAAATTA
* *
50433174 ACATGTATAACTGTGGCATATCCACTTAACACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* *
50433212 ACATGTTTAACTGTGGCATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
*
50433253 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* *
50433297 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
*
50433338 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
50433382 ACATGTAT
1 ACATGTAT
50433390 CAATATGTGT
Statistics
Matches: 148, Mismatches: 12, Indels: 36
0.76 0.06 0.18
Matches are distributed among these distances:
38 63 0.43
39 2 0.01
40 7 0.05
41 4 0.03
42 2 0.01
43 2 0.01
44 4 0.03
45 6 0.04
46 2 0.01
47 56 0.38
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:50433293 original size:47 final size:47
Alignment explanation
Indices: 50433219--50433425 Score: 270
Period size: 47 Copynumber: 4.6 Consensus size: 47
50433209 GTTACATGTT
*
50433219 TAACTGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
50433266 TAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
50433304 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
50433351 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* * *
50433399 TAATCATGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCA
50433426 TGTTTTTTTA
Statistics
Matches: 140, Mismatches: 10, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
38 28 0.20
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 2 0.01
47 59 0.42
48 37 0.26
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:50433298 original size:85 final size:85
Alignment explanation
Indices: 50433181--50433387 Score: 378
Period size: 85 Copynumber: 2.4 Consensus size: 85
50433171 TTAACATGTA
* * *
50433181 TAACTGTGGCATATCCACTTAACACCACGTTACATGTTTAACTGTGGCATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGCATATCCACTTAGCACCA
50433246 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
50433266 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGCATATCCACTTAGCACCA
50433331 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
50433351 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
50433388 ATCAATATGT
Statistics
Matches: 118, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 118 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGCATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:50433413 original size:48 final size:47
Alignment explanation
Indices: 50433304--50433425 Score: 181
Period size: 48 Copynumber: 2.6 Consensus size: 47
50433294 GTTACATGTT
*
50433304 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * * *
50433351 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCATGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
*
50433399 TAATCATGGTATATCCACTTAGCACCA
1 TAACCATGGTATATCCACTTAGCACCA
50433426 TGTTTTTTTA
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
47 31 0.46
48 37 0.54
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.30
Consensus pattern (47 bp):
TAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:50436297 original size:46 final size:46
Alignment explanation
Indices: 50436187--50436405 Score: 223
Period size: 46 Copynumber: 4.7 Consensus size: 46
50436177 CTTCTATATG
* * *
50436187 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATTTCG-
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCGA
*
50436232 TAGCTGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGA
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGA
* * * *
50436279 GGCCGATGCATGTCCCAGACATGTCTTACAGTAGCTCTCGTCTCAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGA
* * * *
50436325 TACCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GT
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGA
*
50436373 TGCCGATGCATGTCTCAGACATGTCTTACACTA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTA
50436406 CCACACAAAT
Statistics
Matches: 145, Mismatches: 20, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 67 0.46
47 28 0.19
48 23 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGA
Found at i:50439183 original size:24 final size:22
Alignment explanation
Indices: 50439156--50439204 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 22
50439146 ACTTTAGCCA
*
50439156 TTTATTTTTTATTGCAATTTAATT
1 TTTATTATTTATTG--ATTTAATT
50439180 TTTATTATTTATTGATTTAATT
1 TTTATTATTTATTGATTTAATT
50439202 TTT
1 TTT
50439205 CTTTCTCTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 11 0.46
24 13 0.54
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.69
Consensus pattern (22 bp):
TTTATTATTTATTGATTTAATT
Found at i:50444573 original size:27 final size:26
Alignment explanation
Indices: 50444538--50444649 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
50444528 AGCATGGCTG
* *
50444538 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
50444564 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
50444592 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
50444619 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
50444646 CCAG
1 CCAG
50444650 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:50444630 original size:54 final size:54
Alignment explanation
Indices: 50444538--50444649 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
50444528 AGCATGGCTG
* *
50444538 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
50444592 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
50444646 CCAG
1 CCAG
50444650 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:50449191 original size:47 final size:47
Alignment explanation
Indices: 50449137--50449326 Score: 290
Period size: 47 Copynumber: 4.0 Consensus size: 47
50449127 GATTTCATGC
** * *
50449137 GATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
50449184 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
50449231 GATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * *
50449278 GATGAATATGAACATGCATATATGTGATAAAGCCGAACGGTCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
50449325 GA
1 GA
50449327 AATATATATA
Statistics
Matches: 131, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:50449208 original size:25 final size:25
Alignment explanation
Indices: 50449180--50449305 Score: 65
Period size: 25 Copynumber: 5.3 Consensus size: 25
50449170 CGAATGGCCA
50449180 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
50449205 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
*
50449227 ATGTGATGAATGTGAGCATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * * *
50449252 GTGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
*
50449274 ATGTGATGAATATGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
50449299 ATGTGAT
1 ATGTGAT
50449306 AAAGCCGAAC
Statistics
Matches: 70, Mismatches: 17, Indels: 28
0.61 0.15 0.24
Matches are distributed among these distances:
22 15 0.21
23 16 0.23
24 17 0.24
25 22 0.31
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:50449233 original size:22 final size:22
Alignment explanation
Indices: 50449162--50449280 Score: 59
Period size: 22 Copynumber: 5.1 Consensus size: 22
50449152 GTATATATGA
50449162 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
50449184 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
50449209 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
50449231 GATGAATGTG-AGCAT-G-CATATGTGT
1 GAT-AA-G-GCCGAATGGCCA-A--TGT
50449256 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
50449278 GAT
1 GAT
50449281 GAATATGAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 20 0.28
23 17 0.24
24 17 0.24
25 17 0.24
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:50449401 original size:48 final size:48
Alignment explanation
Indices: 50449296--50449481 Score: 293
Period size: 48 Copynumber: 3.8 Consensus size: 48
50449286 TGAACATGCA
* * *
50449296 TATATGTGATAAAGCCGAACGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AGTGTG-AA-ATATATATGAGATATG
50449346 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATG
*
50449394 TATATGTGGTAAAGCGGAATGGCTAGTGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATG
*
50449442 TATATGTAGTAAAGCCGAATGGCTAGTGTGAAATATATAT
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATAT
50449482 TGCGGCCGAA
Statistics
Matches: 129, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
48 101 0.78
49 2 0.02
50 25 0.19
51 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATG
Found at i:50449720 original size:37 final size:37
Alignment explanation
Indices: 50449612--50449720 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
50449602 GGAAATATAT
*
50449612 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
50449649 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
50449686 TCCGGGTGAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
50449721 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:50455495 original size:11 final size:10
Alignment explanation
Indices: 50455475--50455509 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
50455465 AGTACAGACA
50455475 AATAATTCAG
1 AATAATTCAG
50455485 AATATATTCAG
1 AATA-ATTCAG
*
50455496 AAAAATTCAG
1 AATAATTCAG
50455506 AATA
1 AATA
50455510 CTTACAGGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.29
Consensus pattern (10 bp):
AATAATTCAG
Found at i:50456603 original size:27 final size:26
Alignment explanation
Indices: 50456565--50456676 Score: 104
Period size: 27 Copynumber: 4.2 Consensus size: 26
50456555 AGCATGGCTG
*
50456565 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAG-CA
*
50456591 CCAGATATAGATAATCGTGGCAGAGCAA
1 CCAGATACAGATAAT-GTGGCAGAGC-A
*
50456619 CCAGA-ACAGAAATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAG-CA
*
50456646 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAG-CA
50456673 CCAG
1 CCAG
50456677 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
26 6 0.08
27 50 0.68
28 17 0.23
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGATACAGATAATGTGGCAGAGCA
Found at i:50456658 original size:54 final size:54
Alignment explanation
Indices: 50456565--50456676 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
50456555 AGCATGGCTG
* * *
50456565 CCAGAACAGATAATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCAA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCAA
* * * *
50456619 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCAA
50456673 CCAG
1 CCAG
50456677 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCAA
Found at i:50462398 original size:35 final size:35
Alignment explanation
Indices: 50462352--50462424 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
50462342 TTTCCGAAGA
* *
50462352 TTATTCATGCTTTAAGTATTCGCACACTTAGTACT
1 TTATTCATGCTTTAAGCATCCGCACACTTAGTACT
50462387 TTATTCATGCTTTAAGCATCCGCACACTTAGTACT
1 TTATTCATGCTTTAAGCATCCGCACACTTAGTACT
50462422 TTA
1 TTA
50462425 AGGCTTAGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.41
Consensus pattern (35 bp):
TTATTCATGCTTTAAGCATCCGCACACTTAGTACT
Found at i:50469304 original size:9 final size:9
Alignment explanation
Indices: 50469290--50469316 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
50469280 GCTATTCATG
50469290 AATACATCA
1 AATACATCA
50469299 AATACATCA
1 AATACATCA
50469308 AATACATCA
1 AATACATCA
50469317 TCTTGCATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (9 bp):
AATACATCA
Done.