Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 156 of 352
Found at i:51208504 original size:24 final size:24
Alignment explanation
Indices: 51208476--51208523 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
51208466 TTACTTAACT
51208476 AAATCAGATTCGCTTGTAGCATGA
1 AAATCAGATTCGCTTGTAGCATGA
51208500 AAATCAGATTCGCTTGTAGCATGA
1 AAATCAGATTCGCTTGTAGCATGA
51208524 CAGGAATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (24 bp):
AAATCAGATTCGCTTGTAGCATGA
Found at i:51211999 original size:45 final size:45
Alignment explanation
Indices: 51211875--51212035 Score: 191
Period size: 45 Copynumber: 3.6 Consensus size: 45
51211865 GTTATACACC
* ** * *
51211875 AAGATGAGTAAGACCACATTTGAAATATGTTATGGTATCATGATA
1 AAGATGAGTAAGACCATAGCTGAAAGATGTTATGGCATCATGATA
* * * *
51211920 AAGATGAGTAAGA-TATAGCTAAAAAATGCTATGGCATCATGATA
1 AAGATGAGTAAGACCATAGCTGAAAGATGTTATGGCATCATGATA
*
51211964 AAGATGAGTACGACCATAGCTGAAAGATGTTATGGCATCATGATA
1 AAGATGAGTAAGACCATAGCTGAAAGATGTTATGGCATCATGATA
* *
51212009 TAA-ATGACTAAGGCCATAGCTGAAAGA
1 -AAGATGAGTAAGACCATAGCTGAAAGA
51212036 CGCTATGGGC
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
44 35 0.36
45 61 0.62
46 2 0.02
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.25
Consensus pattern (45 bp):
AAGATGAGTAAGACCATAGCTGAAAGATGTTATGGCATCATGATA
Found at i:51215232 original size:20 final size:20
Alignment explanation
Indices: 51215189--51215232 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
51215179 TCCTAATTTT
* *
51215189 ATTTGATTCCAATCAATTTT
1 ATTTGATTCCAATCAAATTG
**
51215209 ATTTGATTTTAATCAAATTG
1 ATTTGATTCCAATCAAATTG
51215229 ATTT
1 ATTT
51215233 AATTGCTCCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.52
Consensus pattern (20 bp):
ATTTGATTCCAATCAAATTG
Found at i:51215705 original size:22 final size:23
Alignment explanation
Indices: 51215680--51215729 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
51215670 AATTTATTAT
51215680 TTTATTTTATTT-TATATAAATA
1 TTTATTTTATTTATATATAAATA
* *
51215702 TTTA-TTTATTTATATTTATATA
1 TTTATTTTATTTATATATAAATA
51215724 TTTATT
1 TTTATT
51215730 CGCTAACGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.29
22 16 0.67
23 1 0.04
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTATTTTATTTATATATAAATA
Found at i:51215718 original size:14 final size:14
Alignment explanation
Indices: 51215671--51215728 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
51215661 AAATTATTCA
51215671 ATTTATTATTT-TAT
1 ATTTA-TATTTATAT
51215685 -TTTAT-TTTATAT
1 ATTTATATTTATAT
* *
51215697 A--AATATTTATTT
1 ATTTATATTTATAT
51215709 ATTTATATTTATAT
1 ATTTATATTTATAT
51215723 ATTTAT
1 ATTTAT
51215729 TCGCTAACGT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
11 5 0.14
12 11 0.31
13 4 0.11
14 15 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTTATATTTATAT
Found at i:51215729 original size:26 final size:27
Alignment explanation
Indices: 51215671--51215729 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
51215661 AAATTATTCA
51215671 ATTTA-TTATTTTATTTTATTTTATAT
1 ATTTATTTATTTTATTTTATTTTATAT
**
51215697 AAATATTTA-TTTA-TTTATATTTATAT
1 ATTTATTTATTTTATTTTAT-TTTATAT
51215723 ATTTATT
1 ATTTATT
51215730 CGCTAACGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
25 5 0.19
26 19 0.70
27 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (27 bp):
ATTTATTTATTTTATTTTATTTTATAT
Found at i:51216051 original size:138 final size:140
Alignment explanation
Indices: 51215801--51216218 Score: 502
Period size: 138 Copynumber: 3.0 Consensus size: 140
51215791 CCAGATAGAT
* * *
51215801 TTGGATCTT-GAACTTGAGAGCTAAGAGGTTGCAGTTAGTTAAAACAAAAATATTAGTATATAAA
1 TTGGATCTTAG-ACTTGAGAGTTAAGAGGTTACAGTTGGTTAAAACAAAAATATTAGTATATAAA
* * ** * * *
51215865 GTGCAATTACAAAATTTGCACAAGTTAGTTGGATAAGTAGTTACATTTGAAGTTTGATTTTGGGC
65 GTGTAATTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTGATCTTGGAC
*
51215930 TTAAAAATCTA
130 TTCAAAATCTA
* * *
51215941 TTGGATCTTAGACTTGAGAGTTAAGAGGCTACAGGTGGTT-AAA-AAAAATACTAGTATATAAAG
1 TTGGATCTTAGACTTGAGAGTTAAGAGGTTACAGTTGGTTAAAACAAAAATATTAGTATATAAAG
* *
51216004 TGTAGTTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTGACCTTGGACT
66 TGTAATTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTGATCTTGGACT
* * *
51216069 TCAGAATTTG
131 TCAAAATCTA
* * * * * * *
51216079 TTAGAATCTTAGATTTAAGAGTTGAGAGGTTGA-ATTTGTTTAAAACAAAAATATTAGTATATGA
1 TT-GGATCTTAGACTTGAGAGTTAAGAGGTT-ACAGTTGGTTAAAACAAAAATATTAGTATATAA
** *
51216143 AGTGTAAAATTACAAAAATTGCATGAACTAGTTGAATAAGTAGTTACATTTGAAGTTGGATCTTG
64 AGTGT--AATTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTGATCTTG
51216208 GACTTCAAAAT
127 GACTTCAAAAT
51216219 GTGTTAAATT
Statistics
Matches: 236, Mismatches: 35, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
138 83 0.35
139 31 0.13
140 37 0.16
141 22 0.09
143 63 0.27
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (140 bp):
TTGGATCTTAGACTTGAGAGTTAAGAGGTTACAGTTGGTTAAAACAAAAATATTAGTATATAAAG
TGTAATTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTGATCTTGGACT
TCAAAATCTA
Found at i:51217582 original size:21 final size:22
Alignment explanation
Indices: 51217541--51217589 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
51217531 ATAAATGGAT
*
51217541 TAAATAAAATTTTCTTTAATAA
1 TAAATAAAATTTTCATTAATAA
*
51217563 TAAATTAAATTTT-ATTAATAA
1 TAAATAAAATTTTCATTAATAA
51217584 TAAATA
1 TAAATA
51217590 TCACTGGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
TAAATAAAATTTTCATTAATAA
Found at i:51222744 original size:12 final size:12
Alignment explanation
Indices: 51222727--51222755 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
51222717 GTGGAAAATT
51222727 TGCTACTTTAAG
1 TGCTACTTTAAG
51222739 TGCTACTTTAAG
1 TGCTACTTTAAG
51222751 TGCTA
1 TGCTA
51222756 ATTACAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (12 bp):
TGCTACTTTAAG
Found at i:51226593 original size:13 final size:13
Alignment explanation
Indices: 51226575--51226610 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
51226565 CTTGGGACAC
51226575 GCCCGTGTGGGCA
1 GCCCGTGTGGGCA
51226588 GCCCGTGTGGGCA
1 GCCCGTGTGGGCA
51226601 GCCCGTGTGG
1 GCCCGTGTGG
51226611 TCACACACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.06, C:0.31, G:0.47, T:0.17
Consensus pattern (13 bp):
GCCCGTGTGGGCA
Found at i:51228131 original size:93 final size:93
Alignment explanation
Indices: 51228019--51228190 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
51228009 CGCCCATAAG
* *
51228019 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
51228084 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
51228112 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
51228177 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
51228191 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:51228187 original size:46 final size:46
Alignment explanation
Indices: 51228012--51228187 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
51228002 TGTAACCCGC
* * *
51228012 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
51228058 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
51228108 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51228151 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
51228188 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51228645 original size:30 final size:30
Alignment explanation
Indices: 51228610--51228666 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
51228600 TAACTCAAAT
51228610 TTTTGCAAAATTACAATTTTACCCCTAAAC
1 TTTTGCAAAATTACAATTTTACCCCTAAAC
* * *
51228640 TTTTGCATATTTACATTTTTACCCCTA
1 TTTTGCAAAATTACAATTTTACCCCTA
51228667 GGCTCGGGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.04, T:0.44
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTACCCCTAAAC
Found at i:51236908 original size:23 final size:23
Alignment explanation
Indices: 51236861--51236909 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
51236851 CACTCAAACT
* *
51236861 ATTTAAAAAAAAAAAGTCCTCAA
1 ATTTAAAAAAAAAAAATACTCAA
51236884 ATTTAAAAAAAAAAAATAACT-AA
1 ATTTAAAAAAAAAAAAT-ACTCAA
51236907 ATT
1 ATT
51236910 CATGCTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 21 0.91
24 2 0.09
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.24
Consensus pattern (23 bp):
ATTTAAAAAAAAAAAATACTCAA
Found at i:51237242 original size:38 final size:37
Alignment explanation
Indices: 51237148--51237244 Score: 97
Period size: 38 Copynumber: 2.6 Consensus size: 37
51237138 GATGTGGCAA
* *
51237148 AAAAATTATAAAAAATA-AAAATAAATAAAAGTTATT
1 AAAAATTAAAAAAAATATAAAATAAATAAAAGTTACT
** * ** *
51237184 AAACTTTAATAAAAATTATAAAATATTTAAAATTTACT
1 AAAAATTAA-AAAAAATATAAAATAAATAAAAGTTACT
51237222 AAAAATTAAAAAACAATATAAAA
1 AAAAATTAAAAAA-AATATAAAA
51237245 ATCATAAAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
36 6 0.13
37 11 0.23
38 30 0.64
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (37 bp):
AAAAATTAAAAAAAATATAAAATAAATAAAAGTTACT
Found at i:51237243 original size:19 final size:19
Alignment explanation
Indices: 51237221--51237264 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
51237211 TAAAATTTAC
*
51237221 TAAAAATTA-AAAAACAATA
1 TAAAAATCATAAAAA-AATA
51237240 TAAAAATCATAAAAAAATA
1 TAAAAATCATAAAAAAATA
51237259 TAAAAA
1 TAAAAA
51237265 AATTAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (19 bp):
TAAAAATCATAAAAAAATA
Found at i:51237244 original size:11 final size:10
Alignment explanation
Indices: 51237222--51237272 Score: 54
Period size: 10 Copynumber: 5.2 Consensus size: 10
51237212 AAAATTTACT
51237222 AAAAAT-TAA
1 AAAAATATAA
*
51237231 AAAACA-ATAT
1 AAAA-ATATAA
51237241 AAAAATCATAA
1 AAAAAT-ATAA
51237252 AAAAATATAA
1 AAAAATATAA
51237262 AAAAAT-TAA
1 AAAAATATAA
51237271 AA
1 AA
51237273 TTTTATAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
9 10 0.28
10 17 0.47
11 9 0.25
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAAATATAA
Found at i:51237271 original size:19 final size:19
Alignment explanation
Indices: 51237222--51237272 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
51237212 AAAATTTACT
*
51237222 AAAAATTAAAAAACAATAT
1 AAAAATTAAAAAACAATAA
51237241 AAAAATCATAAAAAA-ATATAA
1 AAAAAT--TAAAAAACA-ATAA
51237262 AAAAATTAAAA
1 AAAAATTAAAA
51237273 TTTTATAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 11 0.39
20 1 0.04
21 16 0.57
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (19 bp):
AAAAATTAAAAAACAATAA
Found at i:51237282 original size:28 final size:26
Alignment explanation
Indices: 51237181--51237297 Score: 81
Period size: 28 Copynumber: 4.2 Consensus size: 26
51237171 AATAAAAGTT
* * *
51237181 ATTAAACTTTAATAAAAATTATAAAATA
1 ATTAAAATTT-ATAAAAAATA-AAAAAA
* *
51237209 TTTAAAATTTACTAAAAATTAAAAAACA
1 ATTAAAATTTA-TAAAAAATAAAAAA-A
* *
51237237 ATATAAAAATCATAAAAAAATATAAAAAA
1 AT-TAAAATTTAT-AAAAAATA-AAAAAA
*
51237266 ATTAAAATTTTATAAAATCATAAAAAAA
1 ATTAAAA-TTTATAAAA-AATAAAAAAA
51237294 ATTA
1 ATTA
51237298 TAATATGCAT
Statistics
Matches: 72, Mismatches: 10, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
27 5 0.07
28 39 0.54
29 23 0.32
30 5 0.07
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (26 bp):
ATTAAAATTTATAAAAAATAAAAAAA
Found at i:51237530 original size:38 final size:38
Alignment explanation
Indices: 51237488--51237569 Score: 96
Period size: 38 Copynumber: 2.2 Consensus size: 38
51237478 TGGTATGATA
* *
51237488 ACTTTTATAATTCTT-TTACGAATTT-TATATTTCTTTAT
1 ACTTTTATAATT-TTCTTACGACTTTATA-AATTCTTTAT
*
51237526 ACTTTTATCATTTTCTTACGACTTTATAAATTCTTTAT
1 ACTTTTATAATTTTCTTACGACTTTATAAATTCTTTAT
*
51237564 ATTTTT
1 ACTTTT
51237570 TCTATATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
37 2 0.05
38 34 0.89
39 2 0.05
ACGTcount: A:0.26, C:0.12, G:0.02, T:0.60
Consensus pattern (38 bp):
ACTTTTATAATTTTCTTACGACTTTATAAATTCTTTAT
Found at i:51237549 original size:20 final size:19
Alignment explanation
Indices: 51237488--51237550 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
51237478 TGGTATGATA
51237488 ACTTTTATAATTCTT-TTACG
1 ACTTTTAT-ATT-TTCTTACG
* *
51237508 AATTTTATA-TTTCTTTA-T
1 ACTTTTATATTTTC-TTACG
51237526 ACTTTTATCATTTTCTTACG
1 ACTTTTAT-ATTTTCTTACG
51237546 ACTTT
1 ACTTT
51237551 ATAAATTCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
17 2 0.06
18 8 0.24
19 8 0.24
20 16 0.47
ACGTcount: A:0.24, C:0.14, G:0.03, T:0.59
Consensus pattern (19 bp):
ACTTTTATATTTTCTTACG
Found at i:51237583 original size:19 final size:18
Alignment explanation
Indices: 51237548--51237618 Score: 61
Period size: 20 Copynumber: 3.7 Consensus size: 18
51237538 TTCTTACGAC
*
51237548 TTTATAAATTCTTTATATTT
1 TTTAT-AATT-TTTATATAT
*
51237568 TTTCTATATTTTTATATAT
1 TTTATA-ATTTTTATATAT
* *
51237587 TTTATAATTTTTTTACGATT
1 TTTATAATTTTTATA-TA-T
51237607 TTTATAATTTTT
1 TTTATAATTTTT
51237619 TCTAATTTCT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
18 8 0.19
19 15 0.35
20 20 0.47
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.68
Consensus pattern (18 bp):
TTTATAATTTTTATATAT
Found at i:51237598 original size:9 final size:9
Alignment explanation
Indices: 51237548--51237618 Score: 54
Period size: 9 Copynumber: 7.3 Consensus size: 9
51237538 TTCTTACGAC
51237548 TTTATAAATT
1 TTTAT-AATT
*
51237558 CTTTATATTT
1 -TTTATAATT
*
51237568 TTTCTATATT
1 TTTATA-ATT
51237578 TTTAT-ATAT
1 TTTATAAT-T
51237587 TTTATAATT
1 TTTATAATT
*
51237596 TTTTTACGATT
1 TTTATA--ATT
51237607 TTTATAATT
1 TTTATAATT
51237616 TTT
1 TTT
51237619 TCTAATTTCT
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
8 2 0.04
9 23 0.47
10 11 0.22
11 13 0.27
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.68
Consensus pattern (9 bp):
TTTATAATT
Found at i:51237599 original size:20 final size:19
Alignment explanation
Indices: 51237490--51237619 Score: 68
Period size: 19 Copynumber: 6.7 Consensus size: 19
51237480 GTATGATAAC
* * *
51237490 TTTTATAATTCTTTTACGAA
1 TTTTATAATTTTTTTA-TAT
* *
51237510 TTTTAT-ATTTCTTTATAC
1 TTTTATAATTTTTTTATAT
* * *
51237528 TTTTATCATTTTCTTACGA-
1 TTTTATAATTTTTTTA-TAT
* * *
51237547 CTTTATAAATTCTTTATAT
1 TTTTATAATTTTTTTATAT
* *
51237566 TTTT-TCTATATTTTTATAT
1 TTTTAT-AATTTTTTTATAT
*
51237585 ATTTTATAATTTTTTTACGAT
1 -TTTTATAATTTTTTTA-TAT
51237606 TTTTATAATTTTTT
1 TTTTATAATTTTTT
51237620 CTAATTTCTA
Statistics
Matches: 82, Mismatches: 21, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
18 9 0.11
19 37 0.45
20 33 0.40
21 3 0.04
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTATAATTTTTTTATAT
Found at i:51242663 original size:42 final size:42
Alignment explanation
Indices: 51242616--51242700 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
51242606 GACATTATTG
51242616 TTACTTAGACAAAGCTGTAAATAATGGATGTATGTTTCAAAA
1 TTACTTAGACAAAGCTGTAAATAATGGATGTATGTTTCAAAA
51242658 TTACTTAGACAAAGCTGTAAATAATGGATGTATGTTTCAAAA
1 TTACTTAGACAAAGCTGTAAATAATGGATGTATGTTTCAAAA
51242700 T
1 T
51242701 CTTGCCCTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.34
Consensus pattern (42 bp):
TTACTTAGACAAAGCTGTAAATAATGGATGTATGTTTCAAAA
Found at i:51243148 original size:27 final size:28
Alignment explanation
Indices: 51243105--51243159 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
51243095 AAAATTTAAA
51243105 AAAAATATTGTTAAAATTTATA-AAAAT
1 AAAAATATTGTTAAAATTTATAGAAAAT
* *
51243132 AAAAATTTTAGTT-AAATTTTTAGAAAAT
1 AAAAATATT-GTTAAAATTTATAGAAAAT
51243160 TTCAAAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (28 bp):
AAAAATATTGTTAAAATTTATAGAAAAT
Found at i:51246520 original size:148 final size:148
Alignment explanation
Indices: 51246323--51246598 Score: 426
Period size: 148 Copynumber: 1.9 Consensus size: 148
51246313 ATATATTTTA
** * **
51246323 ATATATTCAAATTTATGTAGCAACAATACCAATAATAATTGAGTTAAAATTTAATGGATATTTTA
1 ATATATTCAAATTTATGTAGCAACAATACCAATAATAATCAAGTTAAAATTCAATCCATATTTTA
* * *
51246388 GATTTATTATTATTTAAATTTAGATATATTTTCTCCCAATCTGATCTGAGGGAGTAAAGGTGAAC
66 GATCTATTACTATTTAAATTTAGATATATTTTCTCCCAATCTGATCTGAGGGAGAAAAGGTGAAC
51246453 CTGATCTGACGGTCTTAG
131 CTGATCTGACGGTCTTAG
* * *
51246471 ATATATTCAAATTTATGTAGCAATAATACTAATAATAATCAAGTTAAAATTCAGTCCATATTTTA
1 ATATATTCAAATTTATGTAGCAACAATACCAATAATAATCAAGTTAAAATTCAATCCATATTTTA
* * *
51246536 GATCTATTACTGTTTAAATTTAGATATATTTTCTCCCAATCTGATCTGATGGTGAAAAGGTGA
66 GATCTATTACTATTTAAATTTAGATATATTTTCTCCCAATCTGATCTGAGGGAGAAAAGGTGA
51246599 CGGTCTTGAT
Statistics
Matches: 114, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
148 114 1.00
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (148 bp):
ATATATTCAAATTTATGTAGCAACAATACCAATAATAATCAAGTTAAAATTCAATCCATATTTTA
GATCTATTACTATTTAAATTTAGATATATTTTCTCCCAATCTGATCTGAGGGAGAAAAGGTGAAC
CTGATCTGACGGTCTTAG
Found at i:51250494 original size:445 final size:443
Alignment explanation
Indices: 51249666--51250553 Score: 1600
Period size: 445 Copynumber: 2.0 Consensus size: 443
51249656 AATAAAGAGA
51249666 AATACTGGAGTGATAAAATGGAAAATAAAGAATTCAAAATTTACTTGTAGGATCAGTCAGATTCG
1 AATACTGGAGTGATAAAATGGAAAATAAAGAATTCAAAATTTACTTGTAGGATCAGTCAGATTCG
* *
51249731 AGATGGACTACTCTCCCAAATAATACTTTTTAATAAAGACTCCTCTCCTATTAAAGAGTTTCCTA
66 AGATGGACCACTCTCCCAAATAATACTTTTTAATAAAGACTCCTCTCCTACTAAAGAGTTTCCTA
51249796 GGTTATTTATACTAACAATCCCAGGTAATAACCTCAACTAATAAGCTTAAATAAAGGAACATAAT
131 GGTTATTTATACTAACAATCCCAGGTAATAACCTCAACTAATAAGCTTAAATAAAGGAACATAAT
51249861 CTGTAACAGCCAAAGTGGTTCCTAATTTTCATATTAGTGTAACCAAGGTGGTTCCATGATTTCAG
196 CTGTAACAGCCAAAGTGGTTCCTAATTTTCATATTAGTGTAACCAAGGTGGTTCCATGATTTCAG
* *
51249926 TTAACTGACTAAATGTGACTTCTTCCATATTTTTTTCATGTGCCCTAGATTTCCACCTTGAGTAT
261 TTAACTGACTAAATATGACTTCTTCCATATTTTTTCCATGTGCCCTAGATTTCCACCTTGAGTAT
51249991 ATTTATAAGGGAGTTGCATCAATATTTCCCCCTCGTAAGATGACTTGTCCTCAAGGCGAAAGGAT
326 ATTTATAAGGGAGTTGCATCAATATTTCCCCCTCGTAAGATGACTTGTCCTCAAGGCGAAAGGAT
*
51250056 GGAAATTGTTCGACAAAGAGATCATAATTTTTCCCTGAAGCTTCTTCTAAAGG
391 GGAAATTGTTCGACAAAGAGATCATAATTTTCCCCTGAAGCTTCTTCTAAAGG
* *
51250109 AATACTGGAGTGATAAAATGGAAAATAAAGAATTTAAAATTTACTTGTAGGATCAATTC-GATTC
1 AATACTGGAGTGATAAAATGGAAAATAAAGAATTCAAAATTTACTTGTAGGATC-AGTCAGATTC
*
51250173 GAGATGGACCACTCTCCCAAATAATACTTTTTAATAAAAGGACTCC-CTTCTTACTAAAGAGTTT
65 GAGATGGACCACTCTCCCAAATAATACTTTTTAAT-AAA-GACTCCTC-TCCTACTAAAGAGTTT
51250237 CCTAGGTTATTTATACTAACAATCCCAGGTAATAACCTCAACTAATAAGCTTAAATAAAGGAACA
127 CCTAGGTTATTTATACTAACAATCCCAGGTAATAACCTCAACTAATAAGCTTAAATAAAGGAACA
* *
51250302 TAATTTGTAACAGCCAAAGTGGTTCCTAATTTTCATATTTGTGTAACCAAGGTGGTTCCATGATT
192 TAATCTGTAACAGCCAAAGTGGTTCCTAATTTTCATATTAGTGTAACCAAGGTGGTTCCATGATT
51250367 TCAGTTAACTGACTAAATATGACTTCTTCCATATTTTTTCCATGTGCCCTAGATTTCCACCTTGA
257 TCAGTTAACTGACTAAATATGACTTCTTCCATATTTTTTCCATGTGCCCTAGATTTCCACCTTGA
* *
51250432 GTATATTTATAGGGGAGTTGCATCAATATTTCCCCCTCGTAAGATGACTTGTCCTTAAGGCGAAA
322 GTATATTTATAAGGGAGTTGCATCAATATTTCCCCCTCGTAAGATGACTTGTCCTCAAGGCGAAA
* *
51250497 GGATTGAAATTGTTCGACAAGGAGATCATAATTTTCCCCTGAAGCTTCTTCTAAAGG
387 GGATGGAAATTGTTCGACAAAGAGATCATAATTTTCCCCTGAAGCTTCTTCTAAAGG
51250554 CCTCCCTTTC
Statistics
Matches: 427, Mismatches: 14, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
443 92 0.22
444 7 0.02
445 328 0.77
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (443 bp):
AATACTGGAGTGATAAAATGGAAAATAAAGAATTCAAAATTTACTTGTAGGATCAGTCAGATTCG
AGATGGACCACTCTCCCAAATAATACTTTTTAATAAAGACTCCTCTCCTACTAAAGAGTTTCCTA
GGTTATTTATACTAACAATCCCAGGTAATAACCTCAACTAATAAGCTTAAATAAAGGAACATAAT
CTGTAACAGCCAAAGTGGTTCCTAATTTTCATATTAGTGTAACCAAGGTGGTTCCATGATTTCAG
TTAACTGACTAAATATGACTTCTTCCATATTTTTTCCATGTGCCCTAGATTTCCACCTTGAGTAT
ATTTATAAGGGAGTTGCATCAATATTTCCCCCTCGTAAGATGACTTGTCCTCAAGGCGAAAGGAT
GGAAATTGTTCGACAAAGAGATCATAATTTTCCCCTGAAGCTTCTTCTAAAGG
Found at i:51253735 original size:63 final size:63
Alignment explanation
Indices: 51253636--51253763 Score: 184
Period size: 63 Copynumber: 2.0 Consensus size: 63
51253626 TCATATTCAA
* * * * *
51253636 TTCTTTGACAATGGTATCGACTATGAAATTGTGTGTAGAGCCATTATCAATAAGAATTAAAAC
1 TTCTTTCACAATGGTATCAACTATGAAATTGTGTGTAGACCCACTATCAATAAAAATTAAAAC
* * *
51253699 TTCTTTCATAATGGTATCAACTATGAAATTGTGTGTAGACCCACTGTTAATAAAAATTAAAAC
1 TTCTTTCACAATGGTATCAACTATGAAATTGTGTGTAGACCCACTATCAATAAAAATTAAAAC
51253762 TT
1 TT
51253764 GTATGGCCTT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (63 bp):
TTCTTTCACAATGGTATCAACTATGAAATTGTGTGTAGACCCACTATCAATAAAAATTAAAAC
Found at i:51260710 original size:18 final size:18
Alignment explanation
Indices: 51260689--51260746 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
51260679 AAGGTTGACA
51260689 TTTTATTTAAATTAAACG
1 TTTTATTTAAATTAAACG
** * ** *
51260707 TTTTCCTTACATGGAAGG
1 TTTTATTTAAATTAAACG
*
51260725 GTTTATTTAAATTAAACG
1 TTTTATTTAAATTAAACG
51260743 TTTT
1 TTTT
51260747 CCTTACGATC
Statistics
Matches: 26, Mismatches: 14, Indels: 0
0.65 0.35 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (18 bp):
TTTTATTTAAATTAAACG
Found at i:51263465 original size:241 final size:241
Alignment explanation
Indices: 51263036--51263519 Score: 826
Period size: 241 Copynumber: 2.0 Consensus size: 241
51263026 ATTACTGGGC
*
51263036 ATTCTATTTACAACATTTAAGGTGCAGGGGACACACGGCCTAACCACATGCCCAGGTATAAGCTA
1 ATTCTATTTACAACATTTAAGGTGCAGGGGACACACGGCCTAACCACATGCCCAGGTATAAGCCA
* **
51263101 TGTGTCTCACACAGTCTGATCACGTGCCCGTGTGCCAGGCCGTGTGGACTCAAAAATGAGCCTTT
66 TGTATCTCACACAGTCTGATCACACGCCCGTGTGCCAGGCCGTGTGGACTCAAAAATGAGCCTTT
* *
51263166 CAATTCAAGTTTACCAACCTTGCAAACCTTAAATAACAAGCAACTTAAATTCCAATCTTTCAATC
131 CAATTCAAGTTTACCAACCCTGCAAACCTTAAATAACAAGAAACTTAAATTCCAATCTTTCAATC
*
51263231 AATCCAAAACATGATTAAATACATCTAAAACATGTCAAAACTGTTA
196 AATCCAAAACATGATCAAATACATCTAAAACATGTCAAAACTGTTA
* *
51263277 ATTCTGTTTACAACATTTAAGGTGCCGGGGACACACGGCCTAACCACATGCCC-GTGTATAAGCC
1 ATTCTATTTACAACATTTAAGGTGCAGGGGACACACGGCCTAACCACATGCCCAG-GTATAAGCC
* * * *
51263341 GTGTATCTCATACGGTCTGATCACACGCCCGTGTGTCAGGCCGTGTGGACTCAAAAATGAGCCTT
65 ATGTATCTCACACAGTCTGATCACACGCCCGTGTGCCAGGCCGTGTGGACTCAAAAATGAGCCTT
51263406 TCAATTCAAGTTTACCAACCCTGCAAACCTTAAATAACAAGAAACTTAAATTCCAATCTTTCAAT
130 TCAATTCAAGTTTACCAACCCTGCAAACCTTAAATAACAAGAAACTTAAATTCCAATCTTTCAAT
*
51263471 CAATCCAAAAGATGATCAAATACATCTAAAACATGTCAAAACTGTTA
195 CAATCCAAAACATGATCAAATACATCTAAAACATGTCAAAACTGTTA
51263518 AT
1 AT
51263520 ATAACGACCT
Statistics
Matches: 228, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
240 1 0.00
241 227 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (241 bp):
ATTCTATTTACAACATTTAAGGTGCAGGGGACACACGGCCTAACCACATGCCCAGGTATAAGCCA
TGTATCTCACACAGTCTGATCACACGCCCGTGTGCCAGGCCGTGTGGACTCAAAAATGAGCCTTT
CAATTCAAGTTTACCAACCCTGCAAACCTTAAATAACAAGAAACTTAAATTCCAATCTTTCAATC
AATCCAAAACATGATCAAATACATCTAAAACATGTCAAAACTGTTA
Found at i:51268776 original size:26 final size:26
Alignment explanation
Indices: 51268745--51268797 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
51268735 CACCTGAAAG
*
51268745 AAACTCATATAAAAGTAAATATGAAC
1 AAACTCATACAAAAGTAAATATGAAC
51268771 AAACTCATACAAAAGTAAATATGAAC
1 AAACTCATACAAAAGTAAATATGAAC
51268797 A
1 A
51268798 TGCTAATCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.58, C:0.13, G:0.08, T:0.21
Consensus pattern (26 bp):
AAACTCATACAAAAGTAAATATGAAC
Found at i:51269177 original size:19 final size:19
Alignment explanation
Indices: 51269153--51269209 Score: 69
Period size: 21 Copynumber: 2.9 Consensus size: 19
51269143 AGAAACATGG
*
51269153 AAAATATTAAAAATTTTAA
1 AAAATATTTAAAATTTTAA
51269172 AAAATATTTTGAAAATTTTAA
1 AAAATA-TTT-AAAATTTTAA
* *
51269193 AAAAAAGTTAAAATTTT
1 AAAATATTTAAAATTTT
51269210 GGAAAACTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 14 0.42
20 4 0.12
21 15 0.45
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.39
Consensus pattern (19 bp):
AAAATATTTAAAATTTTAA
Found at i:51269343 original size:17 final size:18
Alignment explanation
Indices: 51269323--51269387 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 18
51269313 TTTTTCGTAA
51269323 TTTAA-ATTTTTTGAATT
1 TTTAATATTTTTTGAATT
51269340 TTTATATATTTTTT--ATT
1 TTTA-ATATTTTTTGAATT
51269357 TTTAAAATATTTTTTGAATT
1 TTT--AATATTTTTTGAATT
51269377 GTTTATATATT
1 -TTTA-ATATT
51269388 CAATTTTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
17 10 0.25
18 10 0.25
19 9 0.22
20 8 0.20
21 3 0.08
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (18 bp):
TTTAATATTTTTTGAATT
Found at i:51269351 original size:18 final size:18
Alignment explanation
Indices: 51269330--51269387 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 18
51269320 TAATTTAAAT
51269330 TTTTTGAATTTTTATATA
1 TTTTTGAATTTTTATATA
* *
51269348 TTTTT-TATTTTTAAAATA
1 TTTTTGAATTTTT-ATATA
51269366 TTTTTTGAATTGTTTATATA
1 -TTTTTGAATT-TTTATATA
51269386 TT
1 TT
51269388 CAATTTTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
17 6 0.19
18 9 0.28
19 7 0.22
20 7 0.22
21 3 0.09
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (18 bp):
TTTTTGAATTTTTATATA
Found at i:51270242 original size:14 final size:14
Alignment explanation
Indices: 51270223--51270257 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
51270213 ATATAAACAT
51270223 ATATGTATGCATGC
1 ATATGTATGCATGC
*
51270237 ATATGTGTGCATGC
1 ATATGTATGCATGC
51270251 ATATGTA
1 ATATGTA
51270258 CATATGTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (14 bp):
ATATGTATGCATGC
Found at i:51270567 original size:5 final size:5
Alignment explanation
Indices: 51270546--51270581 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
51270536 TGTGTAATAC
*
51270546 ATATA TTATA ATAATA ATATA ATATA ATATA ATATA
1 ATATA ATATA AT-ATA ATATA ATATA ATATA ATATA
51270582 TAGTTTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:51275304 original size:22 final size:23
Alignment explanation
Indices: 51275278--51275320 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
51275268 TTGTTACTTG
*
51275278 AAATTAATA-ATGTTTTTTTTTT
1 AAATTAATATATGATTTTTTTTT
*
51275300 AAATTGATATATGATTTTTTT
1 AAATTAATATATGATTTTTTT
51275321 GTCAAAATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (23 bp):
AAATTAATATATGATTTTTTTTT
Found at i:51276265 original size:28 final size:28
Alignment explanation
Indices: 51276234--51276287 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 28
51276224 TAAAATTAAT
51276234 TAAAA-TTCAAAAATAA-TAAGAAAAAATA
1 TAAAAGTT-AAAAATAATTAA-AAAAAATA
*
51276262 TAAAAGTTAAATATAATTAAAAAAAA
1 TAAAAGTTAAAAATAATTAAAAAAAA
51276288 GGAAAATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (28 bp):
TAAAAGTTAAAAATAATTAAAAAAAATA
Found at i:51304241 original size:12 final size:13
Alignment explanation
Indices: 51304224--51304257 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
51304214 CATTTCTTTC
51304224 TTTCTTTTTT-TT
1 TTTCTTTTTTCTT
51304236 TTTCTTTTTTCTT
1 TTTCTTTTTTCTT
51304249 TTTCTTTTT
1 TTTCTTTTT
51304258 CTGAAAACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTCTTTTTTCTT
Found at i:51304243 original size:6 final size:6
Alignment explanation
Indices: 51304224--51304259 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
51304214 CATTTCTTTC
*
51304224 TTTCTT TTTTTT TTTCTTT TTTCTT TTTCTT TTTCT
1 TTTCTT TTTCTT TTTC-TT TTTCTT TTTCTT TTTCT
51304260 GAAAACCTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTCTT
Found at i:51304248 original size:19 final size:20
Alignment explanation
Indices: 51304216--51304259 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
51304206 TCCATTGCCA
*
51304216 TTTCTTTCTTTCTTTTTTTT
1 TTTCTTTCTTTCTTTTTCTT
51304236 TTTCTTT-TTTCTTTTTCTT
1 TTTCTTTCTTTCTTTTTCTT
51304255 TTTCT
1 TTTCT
51304260 GAAAACCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTCTTTCTTTCTTTTTCTT
Found at i:51305525 original size:21 final size:22
Alignment explanation
Indices: 51305458--51305525 Score: 79
Period size: 21 Copynumber: 3.2 Consensus size: 22
51305448 AAAAAATACA
*
51305458 TTGATCAATAGTTGACC-ATAG
1 TTGACCAATAGTTGACCGATAG
* *
51305479 TTGATCAAT-GTTGACTGATAG
1 TTGACCAATAGTTGACCGATAG
*
51305500 TTGACCAATATTTGACCGAT-G
1 TTGACCAATAGTTGACCGATAG
51305521 TTGAC
1 TTGAC
51305526 TAGGTATTAC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
20 6 0.15
21 27 0.66
22 8 0.20
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (22 bp):
TTGACCAATAGTTGACCGATAG
Found at i:51306782 original size:12 final size:11
Alignment explanation
Indices: 51306750--51306792 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 11
51306740 CATCTACTTT
51306750 TATATATAT-A
1 TATATATATCA
*
51306760 TATATAAATCA
1 TATATATATCA
51306771 TATACTATATCA
1 TATA-TATATCA
51306783 TAATATATAT
1 T-ATATATAT
51306793 AATCTAAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 8 0.29
11 5 0.18
12 12 0.43
13 3 0.11
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (11 bp):
TATATATATCA
Found at i:51312255 original size:53 final size:53
Alignment explanation
Indices: 51312174--51312324 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
51312164 CTTACACGGT
* *
51312174 TCACATATCATACCGAAGCCATATCCCAGACATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAGACATGGTCTTATACGGAATCACATTA
* *
51312229 TCACATTATACCGATGCCATAGCCCAGATATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGACATGGTCTTATACGGAATCACATTA
** *
51312282 TCACATTGCACCGATGCCATAGCCCAG-CTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGAC-ATGGTCTTATACGG
51312325 GCACACTTAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 80 0.92
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGACATGGTCTTATACGGAATCACATTA
Found at i:51315894 original size:58 final size:57
Alignment explanation
Indices: 51315786--51315896 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
51315776 AAGACTTTTA
* *
51315786 TTAAATTATATATTATTTTATTAAGTTATATTTAATAATAACTATGTTAAAATATGG
1 TTAAATTATATATTATTTTATTAAATTATATTTAATAATAACTATATTAAAATATGG
* * * * *
51315843 TTAAATTATTTATTATTTTTATTAAATTATTTTTAATAGTAATTTTATTAAAAT
1 TTAAATTATATATTA-TTTTATTAAATTATATTTAATAATAACTATATTAAAAT
51315897 TTAATAACAA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 14 0.30
58 32 0.70
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.54
Consensus pattern (57 bp):
TTAAATTATATATTATTTTATTAAATTATATTTAATAATAACTATATTAAAATATGG
Found at i:51316016 original size:39 final size:41
Alignment explanation
Indices: 51315973--51316076 Score: 97
Period size: 44 Copynumber: 2.5 Consensus size: 41
51315963 TCCTTATGCC
51315973 ATTACAACATTATTCCATTCAACCAAACACAAGAA-TACT-
1 ATTACAACATTATTCCATTCAACCAAACACAAGAATTACTG
* ***
51316012 ATTACAGTTCTATTCCATTCCATTCAACCAAACAGTTGAATTACTG
1 ATTACA--AC-ATT--ATTCCATTCAACCAAACACAAGAATTACTG
51316058 ATTACAAC-TCTATTCCATT
1 ATTACAACAT-TATTCCATT
51316077 ACAGCTCTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
39 6 0.12
41 9 0.17
42 4 0.08
43 1 0.02
44 22 0.42
45 4 0.08
46 6 0.12
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.33
Consensus pattern (41 bp):
ATTACAACATTATTCCATTCAACCAAACACAAGAATTACTG
Found at i:51316079 original size:16 final size:16
Alignment explanation
Indices: 51316058--51316127 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
51316048 TGAATTACTG
51316058 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
*
51316074 ATTACAGCTCTATTCC
1 ATTACAACTCTATTCC
* *
51316090 ATTACAGCTCTATTCA
1 ATTACAACTCTATTCC
51316106 ATTACAAC-CTTATTCC
1 ATTACAACTC-TATTCC
51316122 ATTACA
1 ATTACA
51316128 GTGAACCAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
15 1 0.02
16 48 0.98
ACGTcount: A:0.31, C:0.29, G:0.03, T:0.37
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:51316427 original size:20 final size:19
Alignment explanation
Indices: 51316399--51316437 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
51316389 TTATAATATC
*
51316399 ATGTTTAAAATGAACATTTT
1 ATGTCTAAAA-GAACATTTT
*
51316419 ATGTCTAAAAGCACATTTT
1 ATGTCTAAAAGAACATTTT
51316438 CACAACATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (19 bp):
ATGTCTAAAAGAACATTTT
Found at i:51316980 original size:244 final size:246
Alignment explanation
Indices: 51316499--51317114 Score: 757
Period size: 247 Copynumber: 2.5 Consensus size: 246
51316489 ATTTTTTATT
* ** *
51316499 TTTTTATAAATTTTAATATTGTACATATTTT-ATGTGTTATTATCAGTTAGTTTCAAACCATATG
1 TTTTT-TAAATTTTAATATTGTACAT-TTTTCATGTGTTATTATTAAATAGTTTCAAACCATATA
* * * * * * *
51316563 TTTTATTATTTATTATAG-GTTATTTTTAAACATATATTTATGTTCTAAAATTTTGGTTTTTAAT
64 TCTCATTATTTATTGT-GTGTTATTTTTAAACACAAATTTATGTTCTAAATTTTTGGTTTCTAAT
* *
51316627 CGTATACACATGTGATAGAAATTCTAGTATTAGTAATGTATTCGATTGAGTTGTTGTCACAAGTT
128 CATATACACACGTGATAGAAATTCTAGTATTAGTAATGTATTCGATTGAGTTGTTGTCACAAGTT
* * *
51316692 AACTCGACACCAACTTAAGATTGATGACAACATATTGATAAACAATTTAATCTAA
193 AACTCGACACCAACTCAAGATTGATGACAACACAATGATAAACAATTTAATCT-A
* * * *
51316747 TTTTTTAAATTATAATAATGTACATTTTTCATGTGTTATTGTTAAATAGTTTCAAACCATATATG
1 TTTTTTAAATTTTAATATTGTACATTTTTCATGTGTTATTATTAAATAGTTTCAAACCATATATC
* * *
51316812 TCATTATTTATTGTGTGTTATTTTTAAACACACATTTATGTTCGAAATTTTTTGTTTCTACAT-A
66 TCATTATTTATTGTGTGTTATTTTTAAACACAAATTTATGTTCTAAATTTTTGGTTTCTA-ATCA
* * * *
51316876 TATACGCACGTGATA-AGATT-TA-TATTAGTAATGTATTTGATTGAGTTAG-TGTCTCTAA-TT
130 TATACACACGTGATAGAAATTCTAGTATTAGTAATGTATTCGATTGAGTT-GTTGTCAC-AAGTT
*
51316936 AACTCGACACCAACTCAAGATTGATGACAACACAATGATAAACAATTTAATCTT
193 AACTCGACACCAACTCAAGATTGATGACAACACAATGATAAACAATTTAATCTA
* * * *
51316990 TTTTTTAAATTTTAATATTATACATATTTCATGTGTTTTTATT-AATCAGTTTCTAACCATA-AG
1 TTTTTTAAATTTTAATATTGTACATTTTTCATGTGTTATTATTAAAT-AGTTTCAAACCATATA-
* * **
51317053 TCTCACTATTTATTGTATGTTATTTTTAAACACAAATTTGGGTTCTAAATTTTTGGTTTCTA
64 TCTCATTATTTATTGTGTGTTATTTTTAAACACAAATTTATGTTCTAAATTTTTGGTTTCTA
51317115 TACACATAAG
Statistics
Matches: 320, Mismatches: 41, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
242 4 0.01
243 104 0.32
244 81 0.25
245 5 0.02
246 9 0.03
247 110 0.34
248 7 0.02
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.46
Consensus pattern (246 bp):
TTTTTTAAATTTTAATATTGTACATTTTTCATGTGTTATTATTAAATAGTTTCAAACCATATATC
TCATTATTTATTGTGTGTTATTTTTAAACACAAATTTATGTTCTAAATTTTTGGTTTCTAATCAT
ATACACACGTGATAGAAATTCTAGTATTAGTAATGTATTCGATTGAGTTGTTGTCACAAGTTAAC
TCGACACCAACTCAAGATTGATGACAACACAATGATAAACAATTTAATCTA
Found at i:51317141 original size:243 final size:239
Alignment explanation
Indices: 51316497--51317142 Score: 724
Period size: 243 Copynumber: 2.6 Consensus size: 239
51316487 TAATTTTTTA
* * * *
51316497 TTTTTTTATAAATTTTAATATTGTACATATTTTATGTGTTATTATCAGTTAGTTTCAAACCATAT
1 TTTTTTT-TAAATTTTAATATTGTACATATTTCATGTGTTATTATTA-ATAGTTTCAAACCATAA
* * * * * * * *
51316562 GTTTTATTATTTATTATAGGTTATTTTTAAACATATATTTATGTTCTAAAATTTTGGTTTTTAAT
64 GTCTCATTATTTATTGTATGTTATTTTTAAACACAAATTTATGTTCTAAATTTTTGGTTTCTAA-
* * *
51316627 CGTATACACATGTGATAGAAATTCTAGTATTAGTAATGTATTCGATTGAGTTGTTGTCACAAGTT
128 CATATA-A-GTGTGATAG-GATT-TA-TATTAGTAATGTATTCGATTGAGTTGTTGTCACAAGTT
* * *
51316692 AACTCGACACCAACTTAAGATTGATGACAACATATTGATAAACAATTTAATC
188 AACTCGACACCAACTCAAGATTGATGACAACACAATGATAAACAATTTAATC
* * * * *
51316744 TAATTTTTTAAATTATAATAATGTACATTTTTCATGTGTTATTGTTAAATAGTTTCAAACCATAT
1 T-TTTTTTTAAATTTTAATATTGTACATATTTCATGTGTTATTATT-AATAGTTTCAAACCATA-
* * * * *
51316809 A-TGTCATTATTTATTGTGTGTTATTTTTAAACACACATTTATGTTCGAAATTTTTTGTTTCT-A
63 AGTCTCATTATTTATTGTATGTTATTTTTAAACACAAATTTATGTTCTAAATTTTTGGTTTCTAA
* * * *
51316872 CATATATACGCACGTGATAAGATTTATATTAGTAATGTATTTGATTGAGTTAG-TGTCTCTAA-T
128 CATATA-A-G--TGTGATAGGATTTATATTAGTAATGTATTCGATTGAGTT-GTTGTCAC-AAGT
51316935 TAACTCGACACCAACTCAAGATTGATGACAACACAATGATAAACAATTTAATC
187 TAACTCGACACCAACTCAAGATTGATGACAACACAATGATAAACAATTTAATC
* * *
51316988 TTTTTTTTAAATTTTAATATTATACATATTTCATGTGTTTTTATTAATCAGTTTCTAACCATAAG
1 TTTTTTTTAAATTTTAATATTGTACATATTTCATGTGTTATTATTAAT-AGTTTCAAACCATAAG
* **
51317053 TCTCACTATTTATTGTATGTTATTTTTAAACACAAATTTGGGTTCTAAATTTTTGGTTTCTATAC
65 TCTCATTATTTATTGTATGTTATTTTTAAACACAAATTTATGTTCTAAATTTTTGGTTTCTA-AC
*
51317118 ACATAAGTGGATGATAGGATTTATA
129 ATATAAGT-G-TGATAGGATTTATA
51317143 GTTTATACTA
Statistics
Matches: 336, Mismatches: 50, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
242 5 0.01
243 117 0.35
244 82 0.24
245 18 0.05
246 4 0.01
247 104 0.31
248 6 0.02
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (239 bp):
TTTTTTTTAAATTTTAATATTGTACATATTTCATGTGTTATTATTAATAGTTTCAAACCATAAGT
CTCATTATTTATTGTATGTTATTTTTAAACACAAATTTATGTTCTAAATTTTTGGTTTCTAACAT
ATAAGTGTGATAGGATTTATATTAGTAATGTATTCGATTGAGTTGTTGTCACAAGTTAACTCGAC
ACCAACTCAAGATTGATGACAACACAATGATAAACAATTTAATC
Found at i:51318821 original size:53 final size:53
Alignment explanation
Indices: 51318742--51318848 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
51318732 TAATTGTGTG
* *
51318742 TATATATATTATTTATTAAGCTTTTACTGAGTTGGTGTCACCCATCAACTGGA
1 TATATATACTATTTATTAAGCTTTTACTGAGTTGGTGTCACCCATAAACTGGA
*
51318795 TATATATACTATTTATTAAGCTTTTACTGAGTTTGTGTCACCCATAAACTGGA
1 TATATATACTATTTATTAAGCTTTTACTGAGTTGGTGTCACCCATAAACTGGA
51318848 T
1 T
51318849 CCCAACTCAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (53 bp):
TATATATACTATTTATTAAGCTTTTACTGAGTTGGTGTCACCCATAAACTGGA
Found at i:51319474 original size:20 final size:21
Alignment explanation
Indices: 51319451--51319498 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
51319441 AAATTCAAAT
51319451 TAAAATAT-TAAAATTCAGGA
1 TAAAATATCTAAAATTCAGGA
*
51319471 TAAAAT-TCTGAAATTCAGGA
1 TAAAATATCTAAAATTCAGGA
51319491 TAAGAATA
1 TAA-AATA
51319499 CTGATGTGGC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 1 0.04
20 20 0.83
21 3 0.12
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.29
Consensus pattern (21 bp):
TAAAATATCTAAAATTCAGGA
Found at i:51321040 original size:15 final size:16
Alignment explanation
Indices: 51321020--51321052 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
51321010 TATATATTTT
51321020 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
51321035 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
51321052 T
1 T
51321053 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:51321125 original size:21 final size:22
Alignment explanation
Indices: 51321099--51321157 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
51321089 GTTTTAAGAA
*
51321099 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
51321120 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
51321142 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
51321158 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:51321172 original size:26 final size:24
Alignment explanation
Indices: 51321128--51321176 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
51321118 ATTTGTTTTA
*
51321128 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
51321152 ATATTTGATTTATTATATTTTTAAA
1 ATATTTG-TTT-TTATATTTTTAAA
51321177 CTTTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:51326155 original size:249 final size:251
Alignment explanation
Indices: 51325191--51326194 Score: 1408
Period size: 252 Copynumber: 4.0 Consensus size: 251
51325181 TGGTTGTACG
* * * * * *
51325191 AAGGGTGGGGATGCGGAATCAGAAGTAAGGGAGGATCTGAAACTAGAAAAGAGGGAGGAGGCAGA
1 AAGGGTGGGGATACAGAACCAAAAGCAAGGGAGGATCTGAAACTAG-AAAGAGGGAGGAGGCAAA
* * *
51325256 AGAACATGATTCTGTTAGAACTTCTACAGATGAGGGAGGCGTTCACCATGAAACTTCTAAGCCTT
65 AGAACATGATTCTGTTAGAACTTCTACAAATGAAGGAGGTGTTCACCATGAAACTTCTAAGCCTT
* * * * *
51325321 CGGAGAAATGTGAAGACCTGATAGCAG-AGAACAAAGTTGATAAGCAACCTCCTTTGCTGATAGT
130 CAGAGAAACGTGAAGACCAGATAGCAGAAG-ACAAAGTTGATAAGCAAGCTCCTTTGCTGACAGT
* * ** * * * * * *
51325385 GGACAACACTCTTGTAAAAGTTGAATCCAAAGAACAGGAAAGAAGGCTAGAAGATGCATCA
194 GG---ACGCTGTTGCCAAAGTTGGATCAAAAGATCAGGAAAGAGGGCAAGAAGATGAATCA
* *
51325446 AAGGGTGGGGATACAGAACCAAAAGCAAGGGAGGATCTGAAACGAGAAGAGAGGGAGGAGGCAGA
1 AAGGGTGGGGATACAGAACCAAAAGCAAGGGAGGATCTGAAACTAGAA-AGAGGGAGGAGGCAAA
* *
51325511 AGAACATGATTCTGTTAGAACTTCTAAAAATGAAGGAGGTGTTCACCAAGAAACTTCTAAGCCTT
65 AGAACATGATTCTGTTAGAACTTCTACAAATGAAGGAGGTGTTCACCATGAAACTTCTAAGCCTT
* * *
51325576 CAGAGAAACGTGAAGACCAGGTAGCAGAAGAGACAGTTGATAAGCAAGCTCCTTTGCTGACAGTG
130 CAGAGAAACGTGAAGACCAGATAGCAGAAGACAAAGTTGATAAGCAAGCTCCTTTGCTGACAGTG
*
51325641 GACGCTGTTGCCAAAGTTGGATCGAAAGATCAGGAAAGAGGGCAAGAAGATG-ATCCA
195 GACGCTGTTGCCAAAGTTGGATCAAAAGATCAGGAAAGAGGGCAAGAAGATGAAT-CA
* * *
51325698 AAGGGTGGGGATACAGAACCAAAAACAAGGGAGGATCTAAAACTA-AAAGAGGAGGAGGATGCAA
1 AAGGGTGGGGATACAGAACCAAAAGCAAGGGAGGATCTGAAACTAGAAAGA-G-GGAGGAGGCAA
*
51325762 AAGAACATGATTCTGTTAGAACTTCTACAAATGAAGGAGGTGTTCACCATGAAACTTCTGAGCCT
64 AAGAACATGATTCTGTTAGAACTTCTACAAATGAAGGAGGTGTTCACCATGAAACTTCTAAGCCT
* * * * *
51325827 TCAGATAAACATGAAGACCAGGTAGCCGAAGACGAAGTTGATAAGCAAGCTCCTTTGCTGACAGT
129 TCAGAGAAACGTGAAGACCAGATAGCAGAAGACAAAGTTGATAAGCAAGCTCCTTTGCTGACAGT
51325892 GGACGCTGTTGCCAAAGTTGGATCAAAAGATCAGGAAAGAGGGCAAGAAGATGAATCA
194 GGACGCTGTTGCCAAAGTTGGATCAAAAGATCAGGAAAGAGGGCAAGAAGATGAATCA
* *
51325950 AAGGGTGGGGATACAGAACCAAAAGCAAGGGGGGATCTGAAACTAG-AAGA-GGAGGATGCAAAA
1 AAGGGTGGGGATACAGAACCAAAAGCAAGGGAGGATCTGAAACTAGAAAGAGGGAGGAGGCAAAA
51326013 GAACATGATTCTGTTAGAACTTCTACAAATGAAGGAGGTGTTCACCATGAAACTTCTAAGCCTTC
66 GAACATGATTCTGTTAGAACTTCTACAAATGAAGGAGGTGTTCACCATGAAACTTCTAAGCCTTC
* * * * *
51326078 GGAGAAATGTGAAGACCTGATAGCAGAAGACAAAGTTGACAAGCAAGCTCCTTTTCTGACCA-TG
131 AGAGAAACGTGAAGACCAGATAGCAGAAGACAAAGTTGATAAGCAAGCTCCTTTGCTGA-CAGTG
* * * *
51326142 GATGCTGTTGCCAAAGTTGGAGCAAAAGACCAGGAAAGAGGGGAAGAAGATGA
195 GACGCTGTTGCCAAAGTTGGATCAAAAGATCAGGAAAGAGGGCAAGAAGATGA
51326195 GCCTGACTGG
Statistics
Matches: 680, Mismatches: 61, Indels: 22
0.89 0.08 0.03
Matches are distributed among these distances:
249 177 0.26
250 5 0.01
251 5 0.01
252 316 0.46
253 2 0.00
254 2 0.00
255 171 0.25
256 2 0.00
ACGTcount: A:0.38, C:0.16, G:0.28, T:0.18
Consensus pattern (251 bp):
AAGGGTGGGGATACAGAACCAAAAGCAAGGGAGGATCTGAAACTAGAAAGAGGGAGGAGGCAAAA
GAACATGATTCTGTTAGAACTTCTACAAATGAAGGAGGTGTTCACCATGAAACTTCTAAGCCTTC
AGAGAAACGTGAAGACCAGATAGCAGAAGACAAAGTTGATAAGCAAGCTCCTTTGCTGACAGTGG
ACGCTGTTGCCAAAGTTGGATCAAAAGATCAGGAAAGAGGGCAAGAAGATGAATCA
Found at i:51326158 original size:501 final size:505
Alignment explanation
Indices: 51325217--51326194 Score: 1432
Period size: 501 Copynumber: 1.9 Consensus size: 505
51325207 AATCAGAAGT
* *
51325217 AAGGGAGGATCTGAAACTAGAAAAGAGGGAGGAGGCAGAAGAACATGATTCTGTTAGAACTTCTA
1 AAGGGAGGATCTAAAACTAGAAAAGAGGGAGGAGGCAAAAGAACATGATTCTGTTAGAACTTCTA
* * * ** *
51325282 CAGATGAGGGAGGCGTTCACCATGAAACTTCTAAGCCTTCGGAGAAATGTGAAGACCTGATAGCA
66 CAAATGAAGGAGGCGTTCACCATGAAACTTCTAAGCCTTCAGAGAAACATGAAGACCAGATAGCA
* *
51325347 GAGAACAAAGTTGATAAGCAACCTCCTTTGCTGATAGTGGACAACACTCTTGTAAAAGTTGAATC
131 GAGAACAAAGTTGATAAGCAACCTCCTTTGCTGACAGTGG--AACACTCTTGCAAAAGTTGAATC
* * *
51325412 CAAAGAACAGGAAAGAAGGCTAGAAGATGCATCAAAGGGTGGGGATACAGAACCAAAAGCAAGGG
194 AAAAGAACAGGAAAGAAGGCAAGAAGATGAATCAAAGGGTGGGGATACAGAACCAAAAGCAAGGG
*
51325477 AGGATCTGAAACGAGAAGAGAGGGAGGAGGCAGAAGAACATGATTCTGTTAGAACTTCTAAAAAT
259 AGGATCTGAAACGAGAAGAGAGGGAGGAGGCAAAAGAACATGATTCTGTTAGAACTTCTAAAAAT
*
51325542 GAAGGAGGTGTTCACCAAGAAACTTCTAAGCCTTCAGAGAAACGTGAAGACCAGGTAGCAGAAGA
324 GAAGGAGGTGTTCACCAAGAAACTTCTAAGCCTTCAGAGAAACGTGAAGACCAGATAGCAGAAGA
* * * * * *
51325607 GACAGTTGATAAGCAAGCTCCTTTGCTGACAGTGGACGCTGTTGCCAAAGTTGGATCGAAAGATC
389 CAAAGTTGACAAGCAAGCTCCTTTGCTGACAGTGGACGCTGTTGCCAAAGTTGGAGCAAAAGACC
51325672 AGGAAAGAGGGCAAGAAGATGATCCAAAGGGTGGGGATACAGAACCAAAAAC
454 AGGAAAGAGGGCAAGAAGATGATCCAAAGGGTGGGGATACAGAACCAAAAAC
*
51325724 AAGGGAGGATCTAAAACT--AAAAGAGGAGGAGGATGCAAAAGAACATGATTCTGTTAGAACTTC
1 AAGGGAGGATCTAAAACTAGAAAAGA-G-GGAGGAGGCAAAAGAACATGATTCTGTTAGAACTTC
* * * *
51325787 TACAAATGAAGGAGGTGTTCACCATGAAACTTCTGAGCCTTCAGATAAACATGAAGACCAGGTAG
64 TACAAATGAAGGAGGCGTTCACCATGAAACTTCTAAGCCTTCAGAGAAACATGAAGACCAGATAG
* * * * * * *
51325852 CCGA-AGACGAAGTTGATAAGCAAGCTCCTTTGCTGACAGTGG-ACGCTGTTGCCAAAGTTGGAT
129 CAGAGA-ACAAAGTTGATAAGCAACCTCCTTTGCTGACAGTGGAACACTCTTGCAAAAGTTGAAT
* *
51325915 CAAAAGATCAGGAAAGAGGGCAAGAAGATGAATCAAAGGGTGGGGATACAGAACCAAAAGCAAGG
193 CAAAAGAACAGGAAAGAAGGCAAGAAGATGAATCAAAGGGTGGGGATACAGAACCAAAAGCAAGG
* * * *
51325980 GGGGATCTGAAACTAG-A-AGA-GGAGGATGCAAAAGAACATGATTCTGTTAGAACTTCTACAAA
258 GAGGATCTGAAACGAGAAGAGAGGGAGGAGGCAAAAGAACATGATTCTGTTAGAACTTCTAAAAA
* * * *
51326042 TGAAGGAGGTGTTCACCATGAAACTTCTAAGCCTTCGGAGAAATGTGAAGACCTGATAGCAGAAG
323 TGAAGGAGGTGTTCACCAAGAAACTTCTAAGCCTTCAGAGAAACGTGAAGACCAGATAGCAGAAG
* *
51326107 ACAAAGTTGACAAGCAAGCTCCTTTTCTGACCA-TGGATGCTGTTGCCAAAGTTGGAGCAAAAGA
388 ACAAAGTTGACAAGCAAGCTCCTTTGCTGA-CAGTGGACGCTGTTGCCAAAGTTGGAGCAAAAGA
*
51326171 CCAGGAAAGAGGGGAAGAAGATGA
452 CCAGGAAAGAGGGCAAGAAGATGA
51326195 GCCTGACTGG
Statistics
Matches: 421, Mismatches: 46, Indels: 14
0.88 0.10 0.03
Matches are distributed among these distances:
501 175 0.42
502 5 0.01
503 1 0.00
504 90 0.21
505 6 0.01
506 2 0.00
507 142 0.34
ACGTcount: A:0.38, C:0.16, G:0.28, T:0.18
Consensus pattern (505 bp):
AAGGGAGGATCTAAAACTAGAAAAGAGGGAGGAGGCAAAAGAACATGATTCTGTTAGAACTTCTA
CAAATGAAGGAGGCGTTCACCATGAAACTTCTAAGCCTTCAGAGAAACATGAAGACCAGATAGCA
GAGAACAAAGTTGATAAGCAACCTCCTTTGCTGACAGTGGAACACTCTTGCAAAAGTTGAATCAA
AAGAACAGGAAAGAAGGCAAGAAGATGAATCAAAGGGTGGGGATACAGAACCAAAAGCAAGGGAG
GATCTGAAACGAGAAGAGAGGGAGGAGGCAAAAGAACATGATTCTGTTAGAACTTCTAAAAATGA
AGGAGGTGTTCACCAAGAAACTTCTAAGCCTTCAGAGAAACGTGAAGACCAGATAGCAGAAGACA
AAGTTGACAAGCAAGCTCCTTTGCTGACAGTGGACGCTGTTGCCAAAGTTGGAGCAAAAGACCAG
GAAAGAGGGCAAGAAGATGATCCAAAGGGTGGGGATACAGAACCAAAAAC
Found at i:51332504 original size:33 final size:32
Alignment explanation
Indices: 51332452--51332516 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 32
51332442 AGAAATATCA
* *
51332452 CTAAAATTTCCTTCTACTCATCTTCTCGCCTC
1 CTAAAATTTCCTCCCACTCATCTTCTCGCCTC
51332484 CTAAAATTTTCCTCCCACTCATCTTCTCGCCTC
1 CTAAAA-TTTCCTCCCACTCATCTTCTCGCCTC
51332517 TATTCTGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 6 0.20
33 24 0.80
ACGTcount: A:0.18, C:0.40, G:0.03, T:0.38
Consensus pattern (32 bp):
CTAAAATTTCCTCCCACTCATCTTCTCGCCTC
Found at i:51336821 original size:20 final size:21
Alignment explanation
Indices: 51336779--51336827 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
51336769 TTAGTGTCAT
*
51336779 TTTTATTTGTTTTAATATTTA
1 TTTTATTTGTTTTAATATATA
51336800 TTTT-TTTGTTTTTAA-ATATA
1 TTTTATTTG-TTTTAATATATA
*
51336820 TTTGATTT
1 TTTTATTT
51336828 ATTATATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.71
Consensus pattern (21 bp):
TTTTATTTGTTTTAATATATA
Found at i:51347325 original size:23 final size:23
Alignment explanation
Indices: 51347267--51347325 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
51347257 TGGGTAAGAG
*
51347267 ACACGAGCGTGTGCATTGCCTCC
1 ACACGGGCGTGTGCATTGCCTCC
** *
51347290 ACACGGGTATGTGCGTTGCCTCC
1 ACACGGGCGTGTGCATTGCCTCC
51347313 ACACGGGCGTGTG
1 ACACGGGCGTGTG
51347326 GGGCTTAAAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.15, C:0.31, G:0.32, T:0.22
Consensus pattern (23 bp):
ACACGGGCGTGTGCATTGCCTCC
Found at i:51349919 original size:129 final size:129
Alignment explanation
Indices: 51349689--51349947 Score: 491
Period size: 129 Copynumber: 2.0 Consensus size: 129
51349679 GAAAAATGTC
51349689 ATCGAAATGTGGAACCCAAAATATACACTTACCCACATTGAATTTGTGATACACACAGCTATCAA
1 ATCGAAATGTGGAACCCAAAATATACACTTACCCACATTGAATTTGTGATACACACAGCTATCAA
51349754 CAATATTCATCTCAAAACTGAATGAGACAATTACTTGGTGAAACTTGTGGTACCATTGACGGGA
66 CAATATTCATCTCAAAACTGAATGAGACAATTACTTGGTGAAACTTGTGGTACCATTGACGGGA
* * *
51349818 ATCGAAATGTGGAACCTAAAATATATACTTACCCACATTGAATTTGTGATACACACAGTTATCAA
1 ATCGAAATGTGGAACCCAAAATATACACTTACCCACATTGAATTTGTGATACACACAGCTATCAA
51349883 CAATATTCATCTCAAAACTGAATGAGACAATTACTTGGTGAAACTTGTGGTACCATTGACGGGA
66 CAATATTCATCTCAAAACTGAATGAGACAATTACTTGGTGAAACTTGTGGTACCATTGACGGGA
51349947 A
1 A
51349948 GCTTGTTTGA
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
129 127 1.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.27
Consensus pattern (129 bp):
ATCGAAATGTGGAACCCAAAATATACACTTACCCACATTGAATTTGTGATACACACAGCTATCAA
CAATATTCATCTCAAAACTGAATGAGACAATTACTTGGTGAAACTTGTGGTACCATTGACGGGA
Found at i:51350210 original size:44 final size:44
Alignment explanation
Indices: 51350161--51350249 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
51350151 AACTAGAGAG
* *
51350161 AAAGCCTCTATAAAATCAATGTATTCTTTCCGAGTATATCCTTT
1 AAAGCCTCTATAAAATCAATGTATTCTTTCCAAGTAGATCCTTT
*
51350205 AAAGCCTCTATAAAATCAATGTATTCTTTCTAAGTAGATCCTTT
1 AAAGCCTCTATAAAATCAATGTATTCTTTCCAAGTAGATCCTTT
51350249 A
1 A
51350250 GCTATAAGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (44 bp):
AAAGCCTCTATAAAATCAATGTATTCTTTCCAAGTAGATCCTTT
Found at i:51353565 original size:44 final size:44
Alignment explanation
Indices: 51353517--51353624 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 44
51353507 GTGTAAGTTC
* ** *
51353517 AGTATTTCACCGATGGGCGAATTGTATAAAGTCTTCTTGTGTAT
1 AGTATTTCACCAATGGGCGAAAGGTATAAAGTCTGCTTGTGTAT
* * *
51353561 AGTATTTCACCAATGGGCTAAAGGTTTAAAGTCTGCTTGTGTCT
1 AGTATTTCACCAATGGGCGAAAGGTATAAAGTCTGCTTGTGTAT
* *
51353605 AGTATTT-GCCAATGAGCGAA
1 AGTATTTCACCAATGGGCGAA
51353625 CTATGTGTTC
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 10 0.19
44 44 0.81
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (44 bp):
AGTATTTCACCAATGGGCGAAAGGTATAAAGTCTGCTTGTGTAT
Found at i:51358841 original size:22 final size:23
Alignment explanation
Indices: 51358815--51358864 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
51358805 AAGTCCAATT
*
51358815 TGGGCCGTGTG-GGCCACACAGG
1 TGGGCCGTGTGTGCCCACACAGG
*
51358837 TGGG-CGTGTGTGCCCACACGGG
1 TGGGCCGTGTGTGCCCACACAGG
*
51358859 TAGGCC
1 TGGGCC
51358865 AAATGGACCT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 6 0.26
22 16 0.70
23 1 0.04
ACGTcount: A:0.12, C:0.28, G:0.44, T:0.16
Consensus pattern (23 bp):
TGGGCCGTGTGTGCCCACACAGG
Found at i:51367788 original size:59 final size:53
Alignment explanation
Indices: 51367659--51367790 Score: 140
Period size: 53 Copynumber: 2.4 Consensus size: 53
51367649 TTATGACGGG
* *
51367659 ATTACCAGTCCAGGCTAAATCCCTTACAACATAACTCACAGAGTAATGTCGGG
1 ATTACCAGTCCAGGCTAAATCCCTTACAACATAACTCACAGAGTAAGGTCGGA
* * **
51367712 ATTTCCAGTCCAGGCTAAATCCCTTACAATGACATATACTC-CTACGAGTTCAGGTTTGA
1 ATTACCAGTCCAGGCTAAATCCCTTAC-A--ACATA-ACTCAC-A-GAG-TAAGGTCGGA
51367771 ATTACCAGTCCAGGCTAAAT
1 ATTACCAGTCCAGGCTAAAT
51367791 TCAGATCCTA
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
53 26 0.40
54 1 0.02
56 6 0.09
57 5 0.08
58 3 0.05
59 24 0.37
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (53 bp):
ATTACCAGTCCAGGCTAAATCCCTTACAACATAACTCACAGAGTAAGGTCGGA
Found at i:51370216 original size:17 final size:17
Alignment explanation
Indices: 51370184--51370215 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
51370174 AGTTTAATAT
51370184 TTTTATTGCTTTTTTTA
1 TTTTATTGCTTTTTTTA
51370201 TTTTATT-CTTTTTTT
1 TTTTATTGCTTTTTTT
51370216 TCAGCTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.09, C:0.06, G:0.03, T:0.81
Consensus pattern (17 bp):
TTTTATTGCTTTTTTTA
Found at i:51370505 original size:26 final size:26
Alignment explanation
Indices: 51370476--51370571 Score: 102
Period size: 26 Copynumber: 3.6 Consensus size: 26
51370466 TGAAGTCATA
51370476 AAAAATTTAGAATTTTCAAAAATTAT
1 AAAAATTTAGAATTTTCAAAAATTAT
* *
51370502 AAAAAATTAGAATTTTCAAAAATAAT
1 AAAAATTTAGAATTTTCAAAAATTAT
* ***
51370528 AAAAATTATAAGAACTGGAAAAAATTAT
1 AAAAATT-T-AGAATTTTCAAAAATTAT
*
51370556 AAAAATATTAAAATTT
1 AAAAAT-TTAGAATTT
51370572 ATTAAAATTT
Statistics
Matches: 56, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
26 30 0.54
27 5 0.09
28 20 0.36
29 1 0.02
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (26 bp):
AAAAATTTAGAATTTTCAAAAATTAT
Found at i:51370523 original size:27 final size:27
Alignment explanation
Indices: 51370473--51370532 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 27
51370463 TTCTGAAGTC
*
51370473 ATAAAAAATTTAGAATTTTCAAAAATT
1 ATAAAAAATTTAGAATTTTCAAAAATA
51370500 ATAAAAAA-TTAGAATTTTCAAAAATA
1 ATAAAAAATTTAGAATTTTCAAAAATA
51370526 ATAAAAA
1 ATAAAAA
51370533 TTATAAGAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 24 0.75
27 8 0.25
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (27 bp):
ATAAAAAATTTAGAATTTTCAAAAATA
Found at i:51370854 original size:5 final size:5
Alignment explanation
Indices: 51370844--51370869 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
51370834 GGTGCAGGGC
51370844 GGGGT GGGGT GGGGT GGGGT GGGGT G
1 GGGGT GGGGT GGGGT GGGGT GGGGT G
51370870 AATTTTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.81, T:0.19
Consensus pattern (5 bp):
GGGGT
Found at i:51371440 original size:19 final size:20
Alignment explanation
Indices: 51371418--51371466 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
51371408 GTTATTTTTC
51371418 ATATTTTTTAAAT-AAGTTT
1 ATATTTTTTAAATAAAGTTT
* *
51371437 ATATTATTTTCAATAAATTTT
1 ATATT-TTTTAAATAAAGTTT
51371458 ATAATTTTT
1 AT-ATTTTT
51371467 GAAAATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 5 0.20
20 7 0.28
21 10 0.40
22 3 0.12
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (20 bp):
ATATTTTTTAAATAAAGTTT
Found at i:51371451 original size:20 final size:20
Alignment explanation
Indices: 51371418--51371465 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
51371408 GTTATTTTTC
*
51371418 ATATT-TTTTAAATAAGTTT
1 ATATTATTTTAAATAAATTT
*
51371437 ATATTATTTTCAATAAATTT
1 ATATTATTTTAAATAAATTT
*
51371457 -TATAATTTT
1 ATATTATTTT
51371466 TGAAAATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (20 bp):
ATATTATTTTAAATAAATTT
Found at i:51371458 original size:21 final size:19
Alignment explanation
Indices: 51371413--51371466 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 19
51371403 AATTTGTTAT
51371413 TTTTCATATTTTTTAAATAA
1 TTTT-ATATTTTTTAAATAA
* *
51371433 GTTTATATTATTTTCAATAAA
1 TTTTATATT-TTTTAAAT-AA
51371454 TTTTATAATTTTT
1 TTTTAT-ATTTTT
51371467 GAAAATTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 5 0.18
20 10 0.36
21 10 0.36
22 3 0.11
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTATATTTTTTAAATAA
Found at i:51371598 original size:18 final size:18
Alignment explanation
Indices: 51371531--51371607 Score: 61
Period size: 18 Copynumber: 4.3 Consensus size: 18
51371521 AAGTTTTAAT
51371531 AATTTTATATTATTTTTGAA
1 AATTTTAT-TT-TTTTTGAA
*
51371551 AATTTTTAATTTTTTT---
1 AA-TTTTATTTTTTTTGAA
***
51371567 AATTTTAGAATTTTTGAA
1 AATTTTATTTTTTTTGAA
*
51371585 AATTTTATTTTTTTTTAA
1 AATTTTATTTTTTTTGAA
51371603 AATTT
1 AATTT
51371608 CAAGTTATAA
Statistics
Matches: 45, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
15 10 0.22
16 2 0.04
18 19 0.42
19 5 0.11
20 4 0.09
21 5 0.11
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (18 bp):
AATTTTATTTTTTTTGAA
Found at i:51373418 original size:9 final size:9
Alignment explanation
Indices: 51373401--51373457 Score: 50
Period size: 9 Copynumber: 6.7 Consensus size: 9
51373391 AATGTGTATG
*
51373401 TATTATATA
1 TATTTTATA
51373410 TATTTTATA
1 TATTTTATA
*
51373419 CATTTTATA
1 TATTTTATA
51373428 TA---TATA
1 TATTTTATA
*
51373434 TATTATATA
1 TATTTTATA
51373443 TA-TTTATTA
1 TATTTTA-TA
51373452 TATTTT
1 TATTTT
51373458 TATGTATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
6 6 0.15
8 3 0.08
9 27 0.69
10 3 0.08
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (9 bp):
TATTTTATA
Found at i:51373436 original size:24 final size:22
Alignment explanation
Indices: 51373401--51373454 Score: 72
Period size: 24 Copynumber: 2.4 Consensus size: 22
51373391 AATGTGTATG
*
51373401 TATTATATATATTTTATACATTT
1 TATTATATATATTATATACA-TT
*
51373424 TATATATATATATTATATATATT
1 TAT-TATATATATTATATACATT
51373447 TATTATAT
1 TATTATAT
51373455 TTTTATGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 5 0.18
23 8 0.29
24 15 0.54
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TATTATATATATTATATACATT
Found at i:51373471 original size:13 final size:12
Alignment explanation
Indices: 51373401--51373496 Score: 76
Period size: 11 Copynumber: 8.1 Consensus size: 12
51373391 AATGTGTATG
*
51373401 TATTATATATAT
1 TATTATATATTT
*
51373413 T-TTATACATTT
1 TATTATATATTT
*
51373424 TA-TATATA-TA
1 TATTATATATTT
51373434 TATTATATATATT
1 TATTATATAT-TT
51373447 TATTATAT-TTT
1 TATTATATATTT
51373458 TATGTATATATTT
1 TAT-TATATATTT
* *
51373471 T-TAATATCATAT
1 TATTATAT-ATTT
51373483 TATTCATATATTT
1 TATT-ATATATTT
51373496 T
1 T
51373497 TATATTATGT
Statistics
Matches: 66, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
10 3 0.05
11 29 0.44
12 12 0.18
13 18 0.27
14 4 0.06
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.60
Consensus pattern (12 bp):
TATTATATATTT
Found at i:51373473 original size:25 final size:24
Alignment explanation
Indices: 51373421--51373499 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 24
51373411 ATTTTATACA
* *
51373421 TTTTA-TATATATATATTATATAT
1 TTTTATTATATTTTTATTATATAT
*
51373444 ATTTATTATATTTTTATGTATATAT
1 TTTTATTATATTTTTAT-TATATAT
* *
51373469 TTTTAATATCA-TATTATTCATATAT
1 TTTTATTAT-ATTTTTATT-ATATAT
51373494 TTTTAT
1 TTTTAT
51373500 ATTATGTAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
23 4 0.09
24 10 0.22
25 30 0.67
26 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (24 bp):
TTTTATTATATTTTTATTATATAT
Found at i:51373482 original size:14 final size:14
Alignment explanation
Indices: 51373415--51373493 Score: 52
Period size: 14 Copynumber: 5.2 Consensus size: 14
51373405 ATATATATTT
*
51373415 TATACATTTTATATA
1 TATATATTTT-TATA
*
51373430 TATATATTATATATATT
1 TATATATT-T-T-TATA
*
51373447 TATTATATTTTTATG
1 TA-TATATTTTTATA
51373462 TATATATTTTTA-A
1 TATATATTTTTATA
*
51373475 TATCATATTATTCATA
1 TAT-ATATT-TTTATA
51373491 TAT
1 TAT
51373494 TTTTATATTA
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
13 3 0.06
14 15 0.28
15 15 0.28
16 6 0.11
17 8 0.15
18 6 0.11
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (14 bp):
TATATATTTTTATA
Found at i:51373499 original size:14 final size:13
Alignment explanation
Indices: 51373423--51373499 Score: 56
Period size: 14 Copynumber: 6.1 Consensus size: 13
51373413 TTTATACATT
* *
51373423 TTATATATATATA
1 TTATATATTTTTA
*
51373436 TTATATATATTTA
1 TTATATATTTTTA
51373449 -T-TATATTTTTA
1 TTATATATTTTTA
51373460 TGTATATATTTTTA
1 T-TATATATTTTTA
*
51373474 --ATATCA-TATTA
1 TTATAT-ATTTTTA
51373485 TTCATATATTTTTA
1 TT-ATATATTTTTA
51373499 T
1 T
51373500 ATTATGTAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
11 17 0.33
12 2 0.04
13 14 0.27
14 19 0.37
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (13 bp):
TTATATATTTTTA
Found at i:51373514 original size:44 final size:44
Alignment explanation
Indices: 51373439--51373541 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 44
51373429 ATATATATTA
* * *
51373439 TATATATTTATTATATTTTTATGTATATATTTTTAATA-TCATATTAT-
1 TATATATTT-TTATA---TTATGTAAATATTTTCAATACT-ACATTATG
51373486 TCATATATTTTTATATTATGTAAATATTTTCAATACTACATTATG
1 T-ATATATTTTTATATTATGTAAATATTTTCAATACTACATTATG
51373531 TATATATTTTT
1 TATATATTTTT
51373542 GTCTATATTG
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
44 34 0.68
45 2 0.04
47 6 0.12
48 8 0.16
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (44 bp):
TATATATTTTTATATTATGTAAATATTTTCAATACTACATTATG
Found at i:51376539 original size:7 final size:7
Alignment explanation
Indices: 51376480--51376553 Score: 51
Period size: 8 Copynumber: 9.6 Consensus size: 7
51376470 GTTTTATTTA
51376480 TTTTATT
1 TTTTATT
51376487 TTTCT-TT
1 TTT-TATT
*
51376494 ATTTACTT
1 TTTTA-TT
51376502 TTTTACTT
1 TTTTA-TT
51376510 TTTTATT
1 TTTTATT
*
51376517 ATTTATTT
1 TTTTA-TT
51376525 GTCCTTTATT
1 -T--TTTATT
51376535 TTTTATT
1 TTTTATT
51376542 TGTTTATT
1 T-TTTATT
51376550 TTTT
1 TTTT
51376554 TAATTTGTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 16
0.73 0.05 0.21
Matches are distributed among these distances:
6 1 0.02
7 23 0.42
8 24 0.44
9 1 0.02
10 2 0.04
11 4 0.07
ACGTcount: A:0.14, C:0.07, G:0.03, T:0.77
Consensus pattern (7 bp):
TTTTATT
Found at i:51376553 original size:15 final size:15
Alignment explanation
Indices: 51376471--51376553 Score: 62
Period size: 15 Copynumber: 5.3 Consensus size: 15
51376461 TCCTTTTTCG
51376471 TTTTATTTATTT-TAT
1 TTTTATTTATTTAT-T
*
51376486 TTTTCTTTATTTACTT
1 TTTTATTTATTTA-TT
51376502 TTTTACTTT-TTTATT
1 TTTTA-TTTATTTATT
* *
51376517 ATTTATTTGTCCTTTATT
1 TTTTA-TT-T-ATTTATT
*
51376535 TTTTATTTGTTTATT
1 TTTTATTTATTTATT
51376550 TTTT
1 TTTT
51376554 TAATTTGTAT
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
15 29 0.52
16 11 0.20
17 6 0.11
18 10 0.18
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTATTTATTTATT
Found at i:51376566 original size:18 final size:16
Alignment explanation
Indices: 51376471--51376566 Score: 56
Period size: 15 Copynumber: 5.9 Consensus size: 16
51376461 TCCTTTTTCG
* *
51376471 TTTTATTTATTT-TAT
1 TTTTATTTGTTTATTT
* * *
51376486 TTTTCTTTATTTACTT
1 TTTTATTTGTTTATTT
51376502 TTTTACTTT-TTTA-TT
1 TTTTA-TTTGTTTATTT
*
51376517 ATTTATTTGTCCTT-TATT
1 TTTTATTTGT--TTAT-TT
51376535 TTTTATTTGTTTATTT
1 TTTTATTTGTTTATTT
51376551 TTTTAATTTGTATTAT
1 TTTT-ATTTGT-TTAT
51376567 GTAAAATTTA
Statistics
Matches: 65, Mismatches: 6, Indels: 17
0.74 0.07 0.19
Matches are distributed among these distances:
14 3 0.05
15 18 0.28
16 17 0.26
17 12 0.18
18 15 0.23
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.75
Consensus pattern (16 bp):
TTTTATTTGTTTATTT
Found at i:51377530 original size:25 final size:25
Alignment explanation
Indices: 51377502--51377553 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
51377492 AAGTTCTTGT
51377502 ATGTAAGAT-AAATTTTCGAGTTTGA
1 ATGTAAGATAAAATTTT-GAGTTTGA
51377527 ATGTAAGATAAAATTTTGAGTTTGA
1 ATGTAAGATAAAATTTTGAGTTTGA
51377552 AT
1 AT
51377554 ATGCCTAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.38, C:0.02, G:0.19, T:0.40
Consensus pattern (25 bp):
ATGTAAGATAAAATTTTGAGTTTGA
Found at i:51380920 original size:20 final size:20
Alignment explanation
Indices: 51380892--51380935 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
51380882 TACCAACTTG
*
51380892 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
51380912 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
51380932 CAAC
1 CAAC
51380936 TTAAGCATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:51381140 original size:42 final size:43
Alignment explanation
Indices: 51381026--51381140 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
51381016 TACTAATGTG
* * ** *
51381026 ATATCTCAGATATGGTCTTACATGGGATCTCATATCGATGCCA
1 ATATCCCAGATATGGTCTTACACGAAATCTCATATCAATGCCA
* * *
51381069 ATAGT-CCAGCTATGGTCTTGCACGAAATCTCATATCAATTCC-
1 ATA-TCCCAGATATGGTCTTACACGAAATCTCATATCAATGCCA
*
51381111 ATATCCCAGATATGGTCTTACACGTAATCT
1 ATATCCCAGATATGGTCTTACACGAAATCT
51381141 TAACTAACCC
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
41 1 0.02
42 25 0.42
43 32 0.54
44 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (43 bp):
ATATCCCAGATATGGTCTTACACGAAATCTCATATCAATGCCA
Found at i:51385779 original size:42 final size:44
Alignment explanation
Indices: 51385627--51385776 Score: 161
Period size: 43 Copynumber: 3.5 Consensus size: 44
51385617 AATGCGATAT
* *
51385627 CCTAGATATGGTCTTACA--TAAGATCTCATATCGATACCAATAG
1 CCTAGATATAGTCTTACACGTAA-ATCTCATATCGATGCCAATAG
* * *
51385670 CCCAGCTATGGTCTTACACG-AAATCTCATATCGATGCCAATAG
1 CCTAGATATAGTCTTACACGTAAATCTCATATCGATGCCAATAG
* * *
51385713 CCTAGTTATAGTC-T--ACGTAAAATCTCATATCGATGTC-ATAT
1 CCTAGATATAGTCTTACACGT-AAATCTCATATCGATGCCAATAG
51385754 CCTAGATATAGTCTTACACGTAA
1 CCTAGATATAGTCTTACACGTAA
51385777 TCTTAACTAA
Statistics
Matches: 91, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
40 3 0.03
41 15 0.16
42 19 0.21
43 48 0.53
44 6 0.07
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.31
Consensus pattern (44 bp):
CCTAGATATAGTCTTACACGTAAATCTCATATCGATGCCAATAG
Found at i:51389540 original size:12 final size:12
Alignment explanation
Indices: 51389517--51389554 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
51389507 GAGCCATTCT
51389517 AAATGA-TTTAA
1 AAATGATTTTAA
51389528 AAAT-ATCTTTAA
1 AAATGAT-TTTAA
51389540 AAATGATTTTAA
1 AAATGATTTTAA
51389552 AAA
1 AAA
51389555 ATTATATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.04
11 4 0.17
12 17 0.71
13 2 0.08
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (12 bp):
AAATGATTTTAA
Found at i:51389544 original size:23 final size:22
Alignment explanation
Indices: 51389526--51389621 Score: 79
Period size: 22 Copynumber: 4.1 Consensus size: 22
51389516 TAAATGATTT
51389526 AAAAATATCTTTAAAAATGATTTTA
1 AAAAATATCTTT-AAAA--ATTTTA
*
51389551 AAAAATTATATTT-AAAATTTTA
1 AAAAA-TATCTTTAAAAATTTTA
*
51389573 AAAAATAATTTTTAAAAATTTTA
1 AAAAAT-ATCTTTAAAAATTTTA
* *
51389596 AAATATA-CATTTAAAATATTATA
1 AAAAATATC-TTTAAAA-ATTTTA
51389619 AAA
1 AAA
51389622 TAAATAATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
21 1 0.02
22 24 0.39
23 22 0.36
24 3 0.05
25 5 0.08
26 6 0.10
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (22 bp):
AAAAATATCTTTAAAAATTTTA
Found at i:51389554 original size:13 final size:13
Alignment explanation
Indices: 51389522--51389567 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
51389512 ATTCTAAATG
51389522 ATTTAAAAAT-AT
1 ATTTAAAAATGAT
*
51389534 CTTTAAAAATGAT
1 ATTTAAAAATGAT
*
51389547 -TTTAAAAAATTAT
1 ATTT-AAAAATGAT
51389560 ATTTAAAA
1 ATTTAAAA
51389568 TTTTAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 12 0.41
13 14 0.48
14 3 0.10
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (13 bp):
ATTTAAAAATGAT
Found at i:51389573 original size:22 final size:22
Alignment explanation
Indices: 51389545--51389622 Score: 86
Period size: 22 Copynumber: 3.5 Consensus size: 22
51389535 TTTAAAAATG
51389545 ATTTTAAAAAATTATATTTAAA
1 ATTTTAAAAAATTATATTTAAA
* *
51389567 ATTTTAAAAAATAATTTTTAAAA
1 ATTTTAAAAAATTATATTT-AAA
* *
51389590 ATTTTAAAATA-TACATTTAAA
1 ATTTTAAAAAATTATATTTAAA
* *
51389611 ATATTATAAAAT
1 ATTTTAAAAAAT
51389623 AAATAATAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
21 11 0.24
22 21 0.47
23 13 0.29
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (22 bp):
ATTTTAAAAAATTATATTTAAA
Found at i:51389623 original size:23 final size:23
Alignment explanation
Indices: 51389517--51389623 Score: 78
Period size: 23 Copynumber: 4.7 Consensus size: 23
51389507 GAGCCATTCT
*
51389517 AAATGATT-TAAAA-ATATCTTTAA
1 AAAT-ATTATAAAATATATATTT-A
* *
51389540 AAATGATTTTAAAAAATTATATTTA
1 AAAT-ATTATAAAATA-TATATTTA
* * *
51389565 AAATTTTAAAAAATA-ATTTTTA
1 AAATATTATAAAATATATATTTA
* *
51389587 AAA-ATTTTAAAATATACATTTA
1 AAATATTATAAAATATATATTTA
51389609 AAATATTATAAAATA
1 AAATATTATAAAATA
51389624 AATAATAAAT
Statistics
Matches: 67, Mismatches: 12, Indels: 10
0.75 0.13 0.11
Matches are distributed among these distances:
21 8 0.12
22 17 0.25
23 18 0.27
24 12 0.18
25 6 0.09
26 6 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (23 bp):
AAATATTATAAAATATATATTTA
Found at i:51389743 original size:38 final size:38
Alignment explanation
Indices: 51389701--51389774 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
51389691 TTATATTTAA
* *
51389701 AATTTAAAAAATA-ATATTTAAATTTTTTTAAAAATAAT
1 AATTTAAAAAATATATATTTAAA-ATTTTAAAAAATAAT
*
51389739 AATTTTAAAAATATATATTTAAAATTTTAAAAAATA
1 AATTTAAAAAATATATATTTAAAATTTTAAAAAATA
51389775 TATATTATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 23 0.72
39 9 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (38 bp):
AATTTAAAAAATATATATTTAAAATTTTAAAAAATAAT
Found at i:51389766 original size:22 final size:21
Alignment explanation
Indices: 51389674--51389806 Score: 80
Period size: 23 Copynumber: 6.2 Consensus size: 21
51389664 TTTTAAATGT
* * *
51389674 TTTATAATATTAAAAATTTATA
1 TTTAAAATTTTAAAAA-ATATA
51389696 TTTAAAA-TTTAAAAAATAATA
1 TTTAAAATTTTAAAAAAT-ATA
* *
51389717 TTTAAATTTTTTTAAAAATA-A
1 TTTAAA-ATTTTAAAAAATATA
*
51389738 --T--AATTTTAAAAATATATA
1 TTTAAAATTTT-AAAAAATATA
51389756 TTTAAAATTTTAAAAAATATATA
1 TTTAAAATTTT-AAAAA-ATATA
* *
51389779 TTATAAAATATTTAAAATATACA
1 TT-TAAAAT-TTTAAAAAATATA
51389802 TTTAA
1 TTTAA
51389807 CATATTATAA
Statistics
Matches: 88, Mismatches: 11, Indels: 24
0.72 0.09 0.20
Matches are distributed among these distances:
16 4 0.05
17 7 0.08
18 1 0.01
19 1 0.01
20 2 0.02
21 17 0.19
22 21 0.24
23 22 0.25
24 10 0.11
25 3 0.03
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTAAAATTTTAAAAAATATA
Found at i:51389789 original size:37 final size:39
Alignment explanation
Indices: 51389707--51389786 Score: 103
Period size: 38 Copynumber: 2.1 Consensus size: 39
51389697 TTAAAATTTA
* * *
51389707 AAAAATA-ATATTTAAATTTTTTTAAAAATAATAATTTT
1 AAAAATATATATTTAAATATTTTAAAAAATAATAATTAT
51389745 AAAAATATATATTTAAA-ATTTTAAAAAAT-ATATATTAT
1 AAAAATATATATTTAAATATTTTAAAAAATAATA-ATTAT
51389783 AAAA
1 AAAA
51389787 TATTTAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 3 0.08
38 25 0.68
39 9 0.24
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (39 bp):
AAAAATATATATTTAAATATTTTAAAAAATAATAATTAT
Found at i:51389792 original size:25 final size:24
Alignment explanation
Indices: 51389740--51389818 Score: 92
Period size: 23 Copynumber: 3.3 Consensus size: 24
51389730 AAAAATAATA
*
51389740 ATTTTAAAAATATATATTTAAAAT
1 ATTTAAAAAATATATATTTAAAAT
51389764 -TTTAAAAAATATATATTATAAAAT
1 ATTTAAAAAATATATATT-TAAAAT
* *
51389788 ATTT--AAAATATACATTTAACAT
1 ATTTAAAAAATATATATTTAAAAT
51389810 ATTATAAAA
1 ATT-TAAAA
51389819 TCAATAATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
22 8 0.17
23 28 0.60
24 6 0.13
25 5 0.11
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (24 bp):
ATTTAAAAAATATATATTTAAAAT
Found at i:51389806 original size:60 final size:60
Alignment explanation
Indices: 51389677--51389795 Score: 168
Period size: 60 Copynumber: 1.9 Consensus size: 60
51389667 TAAATGTTTT
* * * *
51389677 ATAATATTAAAAATTTATATTTAAAATTTAAAAAATAATATTTAAATTTTTTTAAAAATA
1 ATAATTTTAAAAATATATATTTAAAATTTAAAAAATAATATTTAAATATATTTAAAAATA
51389737 ATAATTTTAAAAATATATATTTAAAATTTTAAAAAATATATATTATAAA-ATATTTAAAA
1 ATAATTTTAAAAATATATATTTAAAA-TTTAAAAAATA-ATATT-TAAATATATTTAAAA
51389796 TATACATTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
60 24 0.46
61 11 0.21
62 13 0.25
63 4 0.08
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (60 bp):
ATAATTTTAAAAATATATATTTAAAATTTAAAAAATAATATTTAAATATATTTAAAAATA
Found at i:51389848 original size:24 final size:24
Alignment explanation
Indices: 51389813--51389866 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
51389803 TTAACATATT
51389813 ATAAAATCAAT-AATAAACAAACAA
1 ATAAAATCAATAAAT-AACAAACAA
* *
51389837 ATAAAA-CAAATAAATGACAAATAA
1 ATAAAATC-AATAAATAACAAACAA
51389861 ATAAAA
1 ATAAAA
51389867 AAAAACTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 1 0.04
24 22 0.85
25 3 0.12
ACGTcount: A:0.72, C:0.09, G:0.02, T:0.17
Consensus pattern (24 bp):
ATAAAATCAATAAATAACAAACAA
Found at i:51393109 original size:11 final size:11
Alignment explanation
Indices: 51393095--51393141 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
51393085 TAAAAATAAC
51393095 AAAAAAAAGAA
1 AAAAAAAAGAA
51393106 AAAAAAAAG-A
1 AAAAAAAAGAA
* **
51393116 AAAACAAATTA
1 AAAAAAAAGAA
*
51393127 AAAAATAAGAA
1 AAAAAAAAGAA
51393138 AAAA
1 AAAA
51393142 GACATAGGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.85, C:0.02, G:0.06, T:0.06
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:51393111 original size:21 final size:20
Alignment explanation
Indices: 51393086--51393141 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
51393076 ACAAACAAAT
*
51393086 AAAAATAACAAAAAAAAGAAA
1 AAAAATAAGAAAAAAAA-AAA
**
51393107 AAAAA-AAGAAAAACAAATTA
1 AAAAATAAGAAAAA-AAAAAA
51393127 AAAAATAAGAAAAAA
1 AAAAATAAGAAAAAA
51393142 GACATAGGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.84, C:0.04, G:0.05, T:0.07
Consensus pattern (20 bp):
AAAAATAAGAAAAAAAAAAA
Found at i:51393123 original size:39 final size:43
Alignment explanation
Indices: 51393063--51393141 Score: 112
Period size: 41 Copynumber: 1.9 Consensus size: 43
51393053 TTCATTATAA
*
51393063 AAAAAGAAAAAGGACAAACAAA-T-AAAAATAACAAAAAAAAG
1 AAAAAGAAAAAGGAAAAACAAATTAAAAAATAACAAAAAAAAG
*
51393104 AAAAA-AAAAA-GAAAAACAAATTAAAAAATAAGAAAAAA
1 AAAAAGAAAAAGGAAAAACAAATTAAAAAATAACAAAAAA
51393142 GACATAGGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
39 9 0.26
40 6 0.18
41 19 0.56
ACGTcount: A:0.81, C:0.05, G:0.08, T:0.06
Consensus pattern (43 bp):
AAAAAGAAAAAGGAAAAACAAATTAAAAAATAACAAAAAAAAG
Found at i:51393827 original size:33 final size:33
Alignment explanation
Indices: 51393774--51393841 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
51393764 AGATTAATTT
*
51393774 ATATGTTATATATTATTATATTAAATTAGTTAA
1 ATATGTTATATATAATTATATTAAATTAGTTAA
* * *
51393807 ATATTTTATGTATAATTATATTAAATTATTTAA
1 ATATGTTATATATAATTATATTAAATTAGTTAA
51393840 AT
1 AT
51393842 CTTATTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (33 bp):
ATATGTTATATATAATTATATTAAATTAGTTAA
Found at i:51394761 original size:25 final size:24
Alignment explanation
Indices: 51394715--51394771 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
51394705 TTTTATTTAC
* *
51394715 ATATTGTTATTAAATTGCTATTATT
1 ATATTTTTATTAAATTGATATTA-T
*
51394740 TTATTTTTATT-AATTGGATATTAT
1 ATATTTTTATTAAATT-GATATTAT
51394764 ATATTTTT
1 ATATTTTT
51394772 TATTTTATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (24 bp):
ATATTTTTATTAAATTGATATTAT
Found at i:51401870 original size:13 final size:13
Alignment explanation
Indices: 51401854--51401893 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
51401844 TTTCAATTTT
51401854 ATTTTAATAATAA
1 ATTTTAATAATAA
51401867 ATTTTATTATAATAA
1 ATTTTA--ATAATAA
*
51401882 ATTTAAATAATA
1 ATTTTAATAATA
51401894 GTATTCACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 12 0.50
15 12 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTTTAATAATAA
Found at i:51401946 original size:15 final size:15
Alignment explanation
Indices: 51401926--51401982 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
51401916 ATCCAATATT
51401926 AATATTTTAATAATA
1 AATATTTTAATAATA
*
51401941 AATATTTATTATAATTATA
1 AATA--T-TT-TAATAATA
*
51401960 AATATATTAATAATA
1 AATATTTTAATAATA
*
51401975 AATGTTTT
1 AATATTTT
51401983 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 17 0.52
16 1 0.03
17 2 0.06
18 2 0.06
19 11 0.33
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:51401955 original size:19 final size:19
Alignment explanation
Indices: 51401928--51401964 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
51401918 CCAATATTAA
*
51401928 TATTTTAATAATAAATATT
1 TATTATAATAATAAATATT
*
51401947 TATTATAATTATAAATAT
1 TATTATAATAATAAATAT
51401965 ATTAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTATAATAATAAATATT
Found at i:51410534 original size:101 final size:101
Alignment explanation
Indices: 51410370--51410693 Score: 368
Period size: 101 Copynumber: 3.2 Consensus size: 101
51410360 TTGGCACAGC
** * *
51410370 AGTTTGGTGTGACAGTCCA-TTTCATCCTAATTTAAATGCTTATAGAAATGTCCTCTTAATTTTG
1 AGTTTGGCATGACAATCCATTTTC-TCCTAATTTAAATGCTTAAAGAAATGTCCTCTTAATTTTG
* * *
51410434 CATTCAATTAAATTTTGACAGGGGAGTTTGGCTGGAT
65 CATTCAATTAAATTTTGGCAGGGTAGTTTGGCTGGGT
** * * **
51410471 AGTTTGGCATGACAATTTATTTTGT-CTCAATTTAAATGCTTAAAGAAATGTCTTCCAAATTTTG
1 AGTTTGGCATGACAATCCATTTTCTCCT-AATTTAAATGCTTAAAGAAATGTCCTCTTAATTTTG
* * *
51410535 CATTCAATCAACTTTTGGCAGGGTAGTTTGGTTGGGT
65 CATTCAATTAAATTTTGGCAGGGTAGTTTGGCTGGGT
* * * * *
51410572 AGCTTGGCATCACAATCCATTTTCTCCTAATTTGAATGTTTATAA-AAATTTCCTCTTAATTTTG
1 AGTTTGGCATGACAATCCATTTTCTCCTAATTTAAATGCTTA-AAGAAATGTCCTCTTAATTTTG
**
51410636 CATTCAATT-AATTTTGGCAGAATAGTTTGGCTGGGT
65 CATTCAATTAAATTTTGGCAGGGTAGTTTGGCTGGGT
* *
51410672 AGTTTGGCATGATAGTCCATTT
1 AGTTTGGCATGACAATCCATTT
51410694 CGCAAATGTC
Statistics
Matches: 183, Mismatches: 36, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
100 43 0.23
101 133 0.73
102 7 0.04
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.41
Consensus pattern (101 bp):
AGTTTGGCATGACAATCCATTTTCTCCTAATTTAAATGCTTAAAGAAATGTCCTCTTAATTTTGC
ATTCAATTAAATTTTGGCAGGGTAGTTTGGCTGGGT
Found at i:51410717 original size:181 final size:182
Alignment explanation
Indices: 51410528--51410878 Score: 483
Period size: 181 Copynumber: 1.9 Consensus size: 182
51410518 ATGTCTTCCA
* * * * *
51410528 AATTTTGCATTCAATCAACTTTTGGCAGGGTAGTTTGGTTGGGTAGCTTGGCATCACAATCCATT
1 AATTTTGCATTCAATCAAATTTTGGCAAGGCAGTTTAGCTGGGTAGCTTGGCATCACAATCCATT
*
51410593 TT-CTCCTAATTTGAATGTTTATAAAAAT-TTCCTCTTAATTTTGCATTCAATTAATTTTGGCA-
66 TTGCTCC-AATTTGAATGTTTATAAAAATGTT-CTCTTAATTTTGCATTCAATCAATTTTGGCAG
* * * * *
51410655 GAATAGTTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCGCAAATGTCCTATT
129 GAACAATTTGGCTAGGTAATTTGGCATGACAGTCCATTTCGCAAATGTCCTATT
* * * *
51410709 AATTTTGCATTCAATCAAATTTTGGTAAGGCAGTTTAGCTGGGTAGTTTGGCATGACAGTCCATT
1 AATTTTGCATTCAATCAAATTTTGGCAAGGCAGTTTAGCTGGGTAGCTTGGCATCACAATCCATT
* * *
51410774 TTGTTCCAATTTGAATGTTTATAGAAATGTTCTCTTAATTTTGCATTCAATCAATTTTGGCAGGG
66 TTGCTCCAATTTGAATGTTTATAAAAATGTTCTCTTAATTTTGCATTCAATCAATTTTGGCAGGA
* *
51410839 GCAATTTGGTTAGGTAATTTGGCATGACAGTCCATTTCGC
131 ACAATTTGGCTAGGTAATTTGGCATGACAGTCCATTTCGC
51410879 CCCAATTTGA
Statistics
Matches: 147, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
181 108 0.73
182 39 0.27
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (182 bp):
AATTTTGCATTCAATCAAATTTTGGCAAGGCAGTTTAGCTGGGTAGCTTGGCATCACAATCCATT
TTGCTCCAATTTGAATGTTTATAAAAATGTTCTCTTAATTTTGCATTCAATCAATTTTGGCAGGA
ACAATTTGGCTAGGTAATTTGGCATGACAGTCCATTTCGCAAATGTCCTATT
Found at i:51410761 original size:81 final size:80
Alignment explanation
Indices: 51410617--51410774 Score: 219
Period size: 81 Copynumber: 2.0 Consensus size: 80
51410607 ATGTTTATAA
* * * * * *
51410617 AAATTTCCTCTTAATTTTGCATTCAATTAATTTTGGCAGAATAGTTTGGCTGGGTAGTTTGGCAT
1 AAATGTCCTATTAATTTTGCATTCAATAAATTTTGGAAGAACAGTTTAGCTGGGTAGTTTGGCAT
*
51410682 GATAGTCCATTTCGC
66 GACAGTCCATTTCGC
*
51410697 AAATGTCCTATTAATTTTGCATTCAATCAAATTTTGGTAAG-GCAGTTTAGCTGGGTAGTTTGGC
1 AAATGTCCTATTAATTTTGCATTCAAT-AAATTTTGG-AAGAACAGTTTAGCTGGGTAGTTTGGC
51410761 ATGACAGTCCATTT
64 ATGACAGTCCATTT
51410775 TGTTCCAATT
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
80 25 0.37
81 41 0.60
82 2 0.03
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (80 bp):
AAATGTCCTATTAATTTTGCATTCAATAAATTTTGGAAGAACAGTTTAGCTGGGTAGTTTGGCAT
GACAGTCCATTTCGC
Found at i:51410826 original size:101 final size:101
Alignment explanation
Indices: 51410697--51411035 Score: 414
Period size: 101 Copynumber: 3.3 Consensus size: 101
51410687 TCCATTTCGC
* * * *
51410697 AAATGTCCTATTAATTTTGCATTCAATCAAATTTTGGTAAGGCAGTTTAGCTGGGTAGTTTGGCA
1 AAATGTTCTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTGGGTAGTTTGGCA
*
51410762 TGACAGTCCATTTTGTTCCAATTTGAATGTTTATAG
66 TGACAGTCCATTTTGTTCCAATTTGAATGCTTATAG
* * * * *
51410798 AAATGTTCTCTTAATTTTGCATTCAATC-AATTTTGGCAGGGGCAATTTGGTTAGGTAATTTGGC
1 AAATGTTCTCTTAATTTTGCATTCAATCAAATTTTGGTA-GGGCAGTTTGGCTGGGTAGTTTGGC
* ** * *
51410862 ATGACAGTCCATTTCGCCCCAATTTGAATCCTTGTAG
65 ATGACAGTCCATTTTGTTCCAATTTGAATGCTTATAG
* * * * * *
51410899 AAATTTTTTGTTAAATTTGCATTCAATCCAATTTTGGTAGGGTAGTTTGGCTTGGGTAGTTTGGC
1 AAATGTTCTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGC-TGGGTAGTTTGGC
* *
51410964 ATGATAGTCCATCTT-TTCCAAATTTGAATGCTTATAG
65 ATGACAGTCCATTTTGTTCC-AATTTGAATGCTTATAG
51411001 AAAT-TTCCTCTTAATTTTGCATTCAATCAAATTTT
1 AAATGTT-CTCTTAATTTTGCATTCAATCAAATTTT
51411036 ATTATTTGTA
Statistics
Matches: 197, Mismatches: 36, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
100 9 0.05
101 113 0.57
102 75 0.38
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.41
Consensus pattern (101 bp):
AAATGTTCTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTGGGTAGTTTGGCA
TGACAGTCCATTTTGTTCCAATTTGAATGCTTATAG
Found at i:51410920 original size:282 final size:284
Alignment explanation
Indices: 51410415--51410975 Score: 711
Period size: 282 Copynumber: 2.0 Consensus size: 284
51410405 ATGCTTATAG
* * * * *
51410415 AAATGTCCTCTTAATTTTGCATTCAATTAAATTTTGACAGGGGAGTTTGGCTGGATAGTTTGGCA
1 AAATGTCCTATTAATTTTGCATTCAATCAAATTTTGACAAGGCAGTTTAGCTGGATAGTTTGGCA
**
51410480 TGACAATTTATTTTGTCTCAATTTAAATGCTTAAAGAAATGTCTTCCAAATTTTGCATTCAATCA
66 TGACAATCCATTTTGTCTCAATTTAAATGCTTAAAGAAATGTCTTCCAAATTTTGCATTCAATCA
* * * * * * *
51410545 ACTTTTGGCAGGGTAGTTTGGTTGGGTAGCTTGGCATCACAATCCATTTTCTCCTAATTTGAATG
131 ACTTTTGGCAGGGCAATTTGGTTAGGTAACTTGGCATCACAATCCATTTTCCCCCAATTTGAATC
* * *
51410610 TTTATAAAAATTTCCTCTTAATTTTGCATTCAAT-TAATTTTGGCAGAATAGTTTGGC-TGGGTA
196 CTTATAAAAATTTCCTCTTAAATTTGCATTCAATCCAATTTTGGCAGAATAGTTTGGCTTGGGTA
51410673 GTTTGGCATGATAGTCCATTTCGC
261 GTTTGGCATGATAGTCCATTTCGC
** *
51410697 AAATGTCCTATTAATTTTGCATTCAATCAAATTTTGGTAAGGCAGTTTAGCTGGGTAGTTTGGCA
1 AAATGTCCTATTAATTTTGCATTCAATCAAATTTTGACAAGGCAGTTTAGCTGGATAGTTTGGCA
* * * * **
51410762 TGACAGTCCATTTTGT-TCCAATTTGAATGTTTATAGAAATGT-TCTCTTAATTTTGCATTCAAT
66 TGACAATCCATTTTGTCT-CAATTTAAATGCTTAAAGAAATGTCT-TCCAAATTTTGCATTCAAT
* * *
51410825 CAA-TTTTGGCAGGGGCAATTTGGTTAGGTAATTTGGCATGACAGTCCA-TTTCGCCCCAATTTG
129 CAACTTTTGGCA-GGGCAATTTGGTTAGGTAACTTGGCATCACAATCCATTTTC-CCCCAATTTG
* * ** * * **
51410888 AATCCTTGTAGAAATTTTTTGTTAAATTTGCATTCAATCCAATTTTGGTAGGGTAGTTTGGCTTG
192 AATCCTTATAAAAATTTCCTCTTAAATTTGCATTCAATCCAATTTTGGCAGAATAGTTTGGCTTG
51410953 GGTAGTTTGGCATGATAGTCCAT
257 GGTAGTTTGGCATGATAGTCCAT
51410976 CTTTTCCAAA
Statistics
Matches: 236, Mismatches: 37, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
281 14 0.06
282 178 0.75
283 19 0.08
284 25 0.11
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (284 bp):
AAATGTCCTATTAATTTTGCATTCAATCAAATTTTGACAAGGCAGTTTAGCTGGATAGTTTGGCA
TGACAATCCATTTTGTCTCAATTTAAATGCTTAAAGAAATGTCTTCCAAATTTTGCATTCAATCA
ACTTTTGGCAGGGCAATTTGGTTAGGTAACTTGGCATCACAATCCATTTTCCCCCAATTTGAATC
CTTATAAAAATTTCCTCTTAAATTTGCATTCAATCCAATTTTGGCAGAATAGTTTGGCTTGGGTA
GTTTGGCATGATAGTCCATTTCGC
Found at i:51411275 original size:101 final size:100
Alignment explanation
Indices: 51411066--51416242 Score: 3698
Period size: 101 Copynumber: 53.3 Consensus size: 100
51411056 CTTAATTTTG
** * ** * *
51411066 AATCAAATTTTGAAAGAGTAGTTTGATTGGGTAGTTTGGCATGGCAAATCCATTTCGT-CCAA-T
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGAC-AGTCCATTTCGTCCCAATT
* * * *
51411129 T-AAAGCTTACA-AAGATG-TCTTCTTAATTCTGTATTC
64 TGAATGCTTATAGAA-ATGTTC-TCTTAATTTTGCATTC
* * * * *
51411165 AATCAAATTTTGGCAGGGTAGTTTGGCTGTGTAGTTCGGCATTATAGTCCATTTCATCCAAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCTG-GTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* ** * *
51411230 GAGTGCCCATTGAAATGTTCTCTTAATTTTTCATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* *
51411266 AATCAAATTTTGGC-----AG---GGC----AGTTTGGCATGACAGTCCATTT-TTTCCAATTTG
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
* * * *
51411318 AATGTTTATAGAATTATTCTTTTAATTTTGCATTC
66 AATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * *
51411353 AATCAAATTTTAGCAGGGCAGTTTGGCTGGATAGTTTAGCATGACAGTCCATTTTGTCCCAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
** * * * *
51411418 GAATATTTATAAAAATATCCTCTTAATTTTGCATTT
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * ** * * *
51411454 AATCAAATATTGGAAGGGCT-GTTTGGCTGGGTAGTTTGGCATGGTAGTCTATTCCATCCCAATT
1 AATCAAATTTTGGCAGGG-TAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATT
* * * *
51411518 TGAATGTTTATAGAAATG-TCATTTTAATATTACATTC
64 TGAATGCTTATAGAAATGTTC-TCTTAATTTTGCATTC
* * * * *
51411555 AATCAAATATTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCTTGACAGTCCATTTCGTTCCAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* * * *
51411620 GAATGTTTAAAGAAATGTCCT-TTTATTTTGCATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * *
51411655 AATC-AATTTT-----GGTA-----G--GGAAGTTTGGCATGACAGTCTATTTTGTCCCAATTTG
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
* * *
51411707 AAAGTTTATTA-AAATGTCCTCTTAATTTTGCATTC
66 AATGCTTA-TAGAAATGTTCTCTTAATTTTGCATTC
* * * *
51411742 AATCAAATTTTGGCAGGGCAGTTTGGTTGGATAGTTTGCCATGACAGTCCATTTTGTCCCAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* * * * *
51411807 GAATGCTTATAAAAATATCCTCTTAATTTTTCATTT
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * ** *
51411843 AATCAAATATTGGAAGGGTTGTTTGGCTAGGTAGTTTGGCATGGTAGTCCATTTTGTCCCAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* * * * *
51411908 GAATGTTTATAGAAATGTCCTTTTAATATTACATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * * * *
51411944 TAA-CAAATATTGGCAAGGCAGTTTGGTTGGGTAGTTTGGCTTGATAGTCCATTTCGTCCCAATT
1 -AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATT
*
51412008 TGAATGCTTATTGAAATG-TCTTCTTAATTTTGCATTC
64 TGAATGCTTATAGAAATGTTC-TCTTAATTTTGCATTC
* *
51412045 AATC-AATTTTGGCAGGG-A-----------AGTTTGGCATGACAATCCATTTTGTCCCAATTTG
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
* * *
51412097 AAAGTTTATTA-AAATGTCCTCTTAATTTTGCATTC
66 AATGCTTA-TAGAAATGTTCTCTTAATTTTGCATTC
* * *
51412132 AATCAAATTTT------G--G-TT-G--GGTAGTTTGGCATGACCGTCCATTTCTTCCAAATTTG
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
* *
51412185 AACT-CTTATAGAAATGTTATCTTAATTTTGCAGTC
66 AA-TGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* ** * * *
51412220 AGTCAAATTTTGGCA----A----AAC----AGTTTGGCATGATAGTCCGTTTTGTCCCAATTTG
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
* *
51412273 AATACTTATAGAAATGTCCTCTTAATTTTGCATTC
66 AATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* **
51412308 AATC-AATTTTGGCA-GGTAAGTTTTGCTGGGTAGTTTGGCATGACAGTTTATTTCGTCCCAATT
1 AATCAAATTTTGGCAGGGT-AGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATT
* * * * *
51412371 TGAATGTTTATCGAAATATCCTCTTAATTTTGCATTT
64 TGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * ** * * **
51412408 AATCAAATTTTGGCAAGGAAATTTGGCTAGACATTTTGGAATGACTA-TCCATTTTATCCCAATT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGAC-AGTCCATTTCGTCCCAATT
*
51412472 TAAACT-CTTATA-AAACTGTTCTCTTAATTTTGCATTC
64 TGAA-TGCTTATAGAAA-TGTTCTCTTAATTTTGCATTC
* ** * * *
51412509 AATCAATTTTTGGTTGGGTAGTTTGGCTGGGTAGTTTGGCATGGCA-TCCCATTTCATTCCAATT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGT-CCATTTCGTCCCAATT
* *
51412573 TGAATGCTTATAGAAATATTCTCTTAATTTTACATTC
64 TGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * * *
51412610 AATC-AATTTTGGCAGGGCAATTTGGTTAGGTAATTTGGCATGACAGTCCATTTCGCCCCAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* * * * *
51412674 GAATACTTATAGAAATGTTTTGTTAAATTTGAATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * * *
51412710 AATCCAATTTTGGTAGGGTAGTTTGGCTTGGGTAGTTTGGCATGATAGTCCATCTT-TTCCAAAT
1 AATCAAATTTTGGCAGGGTAGTTTGGC-T-GGTAGTTTGGCATGACAGTCCAT-TTCGTCCCAAT
51412774 TTGAATGCTTATAGAAAT-TTCCTCTTAATTTTG-ATTTC
63 TTGAATGCTTATAGAAATGTT-CTCTTAATTTTGCA-TTC
** * * * * * *
51412812 AATCAAATTTTGAAAGAGAAGGTTGACTGGGTAGTTTGGCCTGACAGTCCGTTTCGTCCCAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
*
51412877 GAATGCTTATAGAAATGTCCTCTTAATTTTGCATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * * * *
51412913 AATCCAATTTTGGCAAGGCA--AT-G--GGTAGTTTGGCATGACAGTACATTTCATCCCAATTTG
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
* * *
51412973 AATGTTTATAGAAATGTCCTCTTAATTTTGCATTT
66 AATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * ** * ** *
51413008 AATCAAATATTGGTAGGACAGATTGGCTGGGTAGTTTGATATGACAATCCATTTCGTCCCAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* * * *
51413073 AAATACATATAGAAA---TATCTTAATTTTGCATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * * * * *
51413106 CATC-AATTTTGGTAGGGCAGTTTCGCTGGGTAGATTGACATGACAGTCCATTTCGTCCTAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* * *
51413170 TAATGTTTATAGAAATGTCCTCTTAATTTTGCATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * * *
51413206 AATCAAATTTAGGCAGGGTAGTTTTGCTAGGTAGTTTGGCATAACAGTCAATTTTGTCCCAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* *
51413271 TAATGCTTATAGAAATG-TCTTCTTAATTTTACATTC
65 GAATGCTTATAGAAATGTTC-TCTTAATTTTGCATTC
* * ** * * * * *
51413307 AATCTAATTTTGGTAGGCCAGTTTGGCCGGATAGTTTGCCATTACAGTACATTTCGTCCCGATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* * *
51413372 GAATGCGTACAGAAATGTTCTCTTAATTTTGCATTT
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
** **** * *
51413408 AATCAAATTTTAACAACACAGTTTGGCTGGGTAGTTCGGCATGACAGTCCATTTCGTCCAAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* * * *
51413473 GAGTGCCTATTGAAATGTCCTCTTAATTTTGCATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * *
51413509 AATCAAA-TTT-G-A---TA-------TGGAAGTTTGGCATGACAGTTCATTTCTTCCTAATTTG
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
* * *
51413561 AATGTTTATAGAAATATTCTCTTAATTTTACATTC
66 AATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* **** * * *
51413596 AATCAAATTTCGGCACAACAGTTTGGTTGGATAGTTTGGCATGACAGTCTATTTTGTCCCAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* * *
51413661 GAATGCTGATAGAAATATTCTCTTAATGTTGCATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * * * *
51413697 AGTCAAATATTGGCAGGGTTGTTTGGCCAGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGG-CTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* *
51413762 GAATGTTTATAGAAATGTCCTCTTAATTTTGCATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* ** * *
51413798 AATCAAATATTT-GTAGGCCAGTTTGGCTAGGTAGTTTGGCATGATAGTCTATTTCGTCCCAATT
1 AATCAAAT-TTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAA-T
* * * *
51413862 TTGACA--CTTACAAAAAT-TTCCTTTTAATTTTGCATAC
63 TTGA-ATGCTTATAGAAATGTT-CTCTTAATTTTGCATTC
* * *
51413899 AATCAAATTTT---A-GCTA--------GGTAGTTTGGCATGACATTCCATTTCATCCCAATTTG
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
*
51413952 AATGTTTATAGAAATGTTCTCTTAATTTTGCATTC
66 AATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * * * *
51413987 AATTAAATTTTGGCAGGGCAATTTCGCTTGATAGTTTGGCATG-CAGTCCATTTTGTCCC-ATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGC-TGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* * *
51414050 GAATGCTTATATAAATATCCTCTTAATTTTGCATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * * * **
51414086 AATCAAATATTGGTAGGGCT-GTTTGGCTGAGTAGTTTGGCATAATAGTCCATTTCATCTTAATT
1 AATCAAATTTTGGCAGGG-TAGTTTGGCTG-GTAGTTTGGCATGACAGTCCATTTCGTCCCAATT
* ** * * *
51414150 TGAATGTTTATAGAAATGAACTTTTAATATTGTATTC
64 TGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * * * *
51414187 AATCAAATATTGGCACGATAGTTGGGCTGGATAGTTTGACTTGACAGTCCATTTCGTCCCAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
51414252 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * **
51414288 AATC-GATTTT-----GGTA-----GCT--AAGTTTGGCATGACAGTCCATTTTTTCCCAATTT-
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
* * * * *
51414339 AAAGTTTATCGAAATGTCCTATTAATTTTGCATTC
66 AATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * * * * *
51414374 AATCAAATTTTGGCTGGGAAATTTGGCTGGGTAGTTTAGCATGACAATCCATTTCATCCAAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* *
51414439 GAACT-CTTATAGAAATG-TCATCTTAATTTTTCATTT
65 GAA-TGCTTATAGAAATGTTC-TCTTAATTTTGCATTC
* * * * *
51414475 AATCAAATTTTGGCTAGGATA-TTTTGTTATGTAGTTTGGCATAACAGTCCATTTCGTCCCAATT
1 AATCAAATTTTGGC-AGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATT
*
51414539 TGAATGCTTATAGATATG-TCATCTTAATTTTGCATTC
64 TGAATGCTTATAGAAATGTTC-TCTTAATTTTGCATTC
** * * * * *
51414576 AATC-AATTTTTCCTGGGAAGTTT-TCTGGGTAGTTTTGCATGACAG-CCAATTTCATCCCAATT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCC-ATTTCGTCCCAATT
* * *** *
51414638 TGAATGTTTATTGAAATACCCTCTTAATTTTGCATTT
64 TGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * * * * * * *
51414675 AATCAAATCTTGGTAGGGAAATTTGGCTGGGTATTTTAGCATGACTGTCCATTTCATCCCAGTTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* *
51414740 GAACT-TTTATAGAAATG-TCACCTTAATTTTGCATTC
65 GAA-TGCTTATAGAAATGTTC-TCTTAATTTTGCATTC
* ** *
51414776 AATCAAATTTTTTGC---G--G---GG-T--TA-TTTGGCATGGTA-TCCCATTTCATCCCAATT
1 AATCAAA-TTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGT-CCATTTCGTCCCAATT
* * *
51414828 TGAATGCTTATAGACATG-TCTTATTAATTTTGCATTT
64 TGAATGCTTATAGAAATGTTC-TCTTAATTTTGCATTC
* * * * * *
51414865 AATC-AATATTGGAAGGGAAGTGTT-TCTAGGTAGTTTGGCATGACAGTCCGTTTAGTCCCAATT
1 AATCAAATTTTGGCAGGGTAGT-TTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATT
* * * *
51414928 TGAATGCTTATAGAATTGTCCTCTGAATTTTGTATT-
64 TGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* *
51414964 AATC-AATTTT-GCAGGGTAGTTTGGCTGGGTAGGCTT-GCATGACAGTCCATTTCGTACCAATT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTA-GTTTGGCATGACAGTCCATTTCGTCCCAATT
*
51415026 TGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTC
64 TGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * ** ** *
51415063 AATC-AATTGTAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATTGTCCATTTCGTCCCATTTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* *
51415127 GAATGCTTATAG-AATGTCCTTTTAATTTTGCATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* ** ** *
51415162 AATC-AATTTTGGCAGGGTAGTTTGGTTGGATAGTTTTCCATGACAGTCCACGTCGT-CTAAGTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTCCCAA-TT
* * * *
51415225 AGAATGTTTATAGAAAT-ATCATCTTAATTTTGAATTC
64 TGAATGCTTATAGAAATGTTC-TCTTAATTTTGCATTC
** * * *
51415262 AATCAAATTTTGGCAGGGCGGTTTGGCTGAGTAGTTTGGCATGACAGTCCGTTTCATCCCAACTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCTG-GTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* *
51415327 GAATGTTTATAGTAATGTTCTCTTAATTTTGCATTC
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* *
51415363 AATCAAATTTTGGCA----A--------GGAAGTTTGGCATGATAGTCCATTTCGTCCCAATTTG
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
* * * * * *
51415416 AATGCTTTTAGAAATATCCTCTTAAATTTACACTC
66 AATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
** * * * * *
51415451 AATCAAATTTTGGCAGGACAATTTGGCTGGTAGTTTTGCATGACAGTTCATTTCATCCCAATTTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
* * *
51415516 AATTCTTTTA-ATAATGTCCTCTTAATTTTGCATTC
66 AATGCTTATAGA-AATGTTCTCTTAATTTTGCATTC
** * * * * * * * *
51415551 AATC-AATTTCAGTAGAGCAGTTTTGTCGGGTAGTTTGGCATGACAGTCCATTTTGTACCGATTT
1 AATCAAATTTTGGCAGGGTAG-TTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* * * *
51415615 AAATGTTTATAGAAATG-TCTTCTTAATTTGGAATTC
65 GAATGCTTATAGAAATGTTC-TCTTAATTTTGCATTC
* * * * *
51415651 AATAAAATTTTGG-A----A-----G--GGTAGTTTGGCTTGACAATCAATTTTGTCCCAATTTG
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
*
51415704 AATGCTTATAGAAATG-TCTTCTTAATTTTGAATTC
66 AATGCTTATAGAAATGTTC-TCTTAATTTTGCATTC
* * * *
51415739 AACCAAATATTGGCAAGGTAGTTTGGCTCCGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
* * * * * * *
51415804 GAATGTTTATAGAAATATCCTTTTAATTATGTATTT
65 GAATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * *
51415840 AATCAAATATTGGCAGGGTA-ATT---TGGTA---T-G-AT---AGTCCATTTCGTCCTAATTTG
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
51415893 AATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
66 AATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * * * * * *
51415928 AAT-TAGTTTTGGTAGGG-AGGTTTGGTTGGGTAGTTTGACATGACAGTCCATTTCATTCTAATT
1 AATCAAATTTTGGCAGGGTA-GTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATT
*** * * * *
51415991 TGAAAATTTATCA-AAATGTCCTTTTAATTTTGAATTT
64 TGAATGCTTAT-AGAAATGTTCTCTTAATTTTGCATTC
** * *
51416028 AATCAAATTTTGGC----TA--------GGTAGTTTGGCATGATTGTACATTTCAT-CCATATTT
1 AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCA-ATTT
** * *
51416080 GAACT-CTTATAGAAATGTAATATTAATTTTGCATTT
65 GAA-TGCTTATAGAAATGTTCTCTTAATTTTGCATTC
* * * ** * ** * * *
51416116 AAACAAATTTTGGTAGGGCAGTTTCACTTGATAGTTCT-TTATGATAGTCTATTTTGTCCCAATT
1 AATCAAATTTTGGCAGGGTAGTTTGGC-TGGTAGTT-TGGCATGACAGTCCATTTCGTCCCAATT
* *
51416180 TGAATGCTTTTAGAAATG-TCATCTTAATTTTGCGTTC
64 TGAATGCTTATAGAAATGTTC-TCTTAATTTTGCATTC
51416217 AATC-AATTTTGGCAGGGTAGTTTGGC
1 AATCAAATTTTGGCAGGGTAGTTTGGC
51416243 ATGACAGTCC
Statistics
Matches: 4026, Mismatches: 773, Indels: 557
0.75 0.14 0.10
Matches are distributed among these distances:
82 1 0.00
86 84 0.02
87 262 0.07
88 495 0.12
89 62 0.02
90 7 0.00
91 5 0.00
92 15 0.00
93 10 0.00
94 5 0.00
95 90 0.02
96 7 0.00
97 75 0.02
98 113 0.03
99 292 0.07
100 646 0.16
101 1724 0.43
102 130 0.03
103 3 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (100 bp):
AATCAAATTTTGGCAGGGTAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG
AATGCTTATAGAAATGTTCTCTTAATTTTGCATTC
Found at i:51411787 original size:389 final size:390
Alignment explanation
Indices: 51411048--51415952 Score: 3458
Period size: 389 Copynumber: 12.6 Consensus size: 390
51411038 TATTTGTATG
* * * * **
51411048 AATGTCCTCTTAATTTTG-----AATCAAATTTTGAAAGAGTAGTTTGATTGGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * * * * *
51411108 GGCAAATCCATTTCGT-CCAA-TT-AAAGCTTACA-AAGATGTCTTCTTAATTCTGTATTCAATC
66 GAC-AGTCCATTTCGTCCCAATTTGAATGCTTATAGAA-ATGTCCTCTTAATTTTGCATTCAATC
* * * * * * * * *
51411169 AAATTTTGGCAGGGTAGTTTGGCTGTGTAGTTCGGCATTATAGTCCATTTCATCCAAATTTGAGT
129 AAATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAAT
*** * * * * *
51411234 GCCCATTGAAATGTTCTCTTAATTTTTCATTCAATCAAATTTTGGCAGGGCAGTTTGGCATGACA
194 GTTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGAAGTTTGGCATGACA
* * * * *
51411299 GTCCATTTT-TTCCAATTTGAATGTTTATAGAATTATTCTTTTAATTTTGCATTCAATCAAATTT
259 GTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * **
51411363 TAGCAGGGCAGTTTGGCTGGATAGTTTAGCATGACAGTCCATTTTGTCCCAATTTGAATATTTAT
324 TGGCAGGGCAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTAT
*
51411428 AAA
388 AGA
* * *
51411431 AATATCCTCTTAATTTTGCATTTAATCAAATATTGGAAGGGCTGTTTGGCTGGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
** * * * * * * * *
51411496 GGTAGTCTATTCCATCCCAATTTGAATGTTTATAGAAATGTCATTTTAATATTACATTCAATCAA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
* * *
51411561 ATATTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCTTGACAGTCCATTTCGTTCCAATTTGAATGT
131 ATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGT
* *
51411626 TTAAAGAAATGTCCT-TTTATTTTGCATTCAATC-AATTTTGGTAGGGAAGTTTGGCATGACAGT
196 TTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGAAGTTTGGCATGACAGT
* *
51411689 CTATTTTGTCCCAATTTGAAAGTTTATTA-AAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
261 CCATTTTGTCCCAATTTGAATGTTTA-TAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * *
51411753 GGCAGGGCAGTTTGGTTGGATAGTTTGCCATGACAGTCCATTTTGTCCCAATTTGAATGCTTATA
325 GGCAGGGCAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATA
*
51411818 AA
389 GA
* * * ** *
51411820 AATATCCTCTTAATTTTTCATTTAATCAAATATTGGAAGGGTTGTTTGGCTAGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
** * * * * *
51411885 GGTAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTTTTAATATTACATTCTAA-CA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTC-AATCA
* * * *
51411949 AATATTGGCAAGGCAGTTTGGTTGGGTAGTTTGGCTTGATAGTCCATTTCGTCCCAATTTGAATG
130 AATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATG
* * * * *
51412014 CTTATTGAAATGTCTTCTTAATTTTGCATTCAATC-AATTTTGGCAGGGAAGTTTGGCATGACAA
195 TTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGAAGTTTGGCATGACAG
*
51412078 TCCATTTTGTCCCAATTTGAAAGTTTATTA-AAATGTCCTCTTAATTTTGCATTCAATCAAATTT
260 TCCATTTTGTCCCAATTTGAATGTTTA-TAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * *
51412142 T------G--G-TT-G--GGTAGTTTGGCATGACCGTCCATTTCTTCCAAATTTGAACT-CTTAT
324 TGGCAGGGCAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAA-TGCTTAT
51412194 AGA
388 AGA
** * * * *
51412197 AATGTTATCTTAATTTTGCAGTCAGTCAAATTTTGGCAA----A-----AC-----AGTTTGGCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGG-AAGGGCAGTTTGGCTGGGTAGTTTGGCA
* * * *
51412248 TGATAGTCCGTTTTGTCCCAATTTGAATACTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCA
* * **
51412312 AATTTTGGC-AGGTAAGTTTTGCTGGGTAGTTTGGCATGACAGTTTATTTCGTCCCAATTTGAAT
130 AATTTTGGCAAGG-CAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAAT
* * * * * *
51412376 GTTTATCGAAATATCCTCTTAATTTTGCATTTAATCAAATTTTGGCAAGGAAATTTGGC-TAGAC
194 GTTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGAAGTTTGGCAT-GAC
* * * *
51412440 ATTTTGGAATGACTATCCATTTTATCCCAATTTAAACT-CTTATA-AAACTGTTCTCTTAATTTT
258 --------A-G----TCCATTTTGTCCCAATTTGAA-TGTTTATAGAAA-TGTCCTCTTAATTTT
* ** * * * *
51412503 GCATTCAATCAATTTTTGGTTGGGTAGTTTGGCTGGGTAGTTTGGCATGGCA-TCCCATTTCATT
308 GCATTCAATCAAATTTTGGCAGGGCAGTTTGGCT-GGTAGTTTGGCATGACAGT-CCATTTCGTC
51412567 CCAATTTGAATGCTTATAGA
371 CCAATTTGAATGCTTATAGA
* * * * * * * * *
51412587 AATATTCTCTTAATTTTACATTCAATC-AATTTTGGCAGGGCAATTTGGTTAGGTAATTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * ** * * * *
51412651 GACAGTCCATTTCGCCCCAATTTGAATACTTATAGAAATGTTTTGTTAAATTTGAATTCAATCCA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
* * * * * *
51412716 ATTTTGGTAGGGTAGTTTGGCTTGGGTAGTTTGGCATGATAGTCCATCTT-TTCCAAATTTGAAT
131 ATTTTGGCAAGGCAGTTTGGC-TGGGTAGTTTGGCATGACAGTCCAT-TTCGTCCCAATTTGAAT
* * *
51412780 GCTTATAGAAATTTCCTCTTAATTTTG-ATTTCAATCAAATTTTGAAAGAGAAGGTTGACTGGGT
194 GTTTATAGAAATGTCCTCTTAATTTTGCA-TTCAATCAAATTTT---------GG-T-A--GGGA
* * * *
51412844 AGTTTGGCCTGACAGTCCGTTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGC
245 AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * *
51412909 ATTCAATCCAATTTTGGCAAGGCA--AT-G--GGTAGTTTGGCATGACAGTACATTTCATCCCAA
310 ATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAA
*
51412969 TTTGAATGTTTATAGA
375 TTTGAATGCTTATAGA
* * * * **
51412985 AATGTCCTCTTAATTTTGCATTTAATCAAATATTGGTAGGACAGATTGGCTGGGTAGTTTGATAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * * * *
51413050 GACAATCCATTTCGTCCCAATTTAAATACATATAGAAA--T-ATCTTAATTTTGCATTCCATC-A
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
* * * * * * *
51413111 ATTTTGGTAGGGCAGTTTCGCTGGGTAGATTGACATGACAGTCCATTTCGTCCTAATTTTAATGT
131 ATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGT
* *
51413176 TTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTAGGCAGGGTAGTTTTGCTAGGTAGT
196 TTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT-----TGGTA-----G---GGAAGT
* * * * * *
51413241 TTGGCATAACAGTCAATTTTGTCCCAATTTTAATGCTTATAGAAATGTCTTCTTAATTTTACATT
248 TTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGCATT
* * * * * * * *
51413306 CAATCTAATTTTGGTAGGCCAGTTTGGCCGGATAGTTTGCCATTACAGTACATTTCGTCCCGATT
313 CAATCAAATTTTGGCAGGGCAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTCCCAATT
* *
51413371 TGAATGCGTACAGA
377 TGAATGCTTATAGA
* * ** *** *
51413385 AATGTTCTCTTAATTTTGCATTTAATCAAAT-TTTAACAACACAGTTTGGCTGGGTAGTTCGGCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGA-AGGGCAGTTTGGCTGGGTAGTTTGGCA
* * * *
51413449 TGACAGTCCATTTCGTCCAAATTTGAGTGCCTATTGAAATGTCCTCTTAATTTTGCATTCAATCA
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCA
* * * * *
51413514 AA-TTT------G-A---T--AT-GGAAGTTTGGCATGACAGTTCATTTCTTCCTAATTTGAATG
130 AATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATG
* * * * *
51413565 TTTATAGAAATATTCTCTTAATTTTACATTCAATCAAATTTCGGCACAACAGTTTGGTTGGATAG
195 TTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT-TG-------G--TAG--GGA-AG
* * * * * *
51413630 TTTGGCATGACAGTCTATTTTGTCCCAATTTGAATGCTGATAGAAATATTCTCTTAATGTTGCAT
247 TTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGCAT
* * ** * * *
51413695 TCAGTCAAATATTGGCAGGGTTGTTTGGCCAGGTAGTTTGGCATGATAGTCCATTTCATCCCAAT
312 TCAATCAAATTTTGGCAGGGCAGTTTGG-CTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAAT
*
51413760 TTGAATGTTTATAGA
376 TTGAATGCTTATAGA
* * * *
51413775 AATGTCCTCTTAATTTTGCATTCAATCAAATATTTGTAGGCCAGTTTGGCTAGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * * * * *
51413840 GATAGTCTATTTCGTCCCAATTTTGACA--CTTACAAAAATTTCCTTTTAATTTTGCATACAATC
66 GACAGTCCATTTCGTCCCAA-TTTGA-ATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC
* * *
51413903 AAATTTT--------A-----GCTAGGTAGTTTGGCATGACATTCCATTTCATCCCAATTTGAAT
129 AAATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAAT
* * *
51413955 GTTTATAGAAATGTTCTCTTAATTTTGCATTCAATTAAATTTTGGCAGGGCAATTTCGCTTGATA
194 GTTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGTA--G-------G---GA-A
* * *
51414020 GTTTGGCATG-CAGTCCATTTTGTCCC-ATTTGAATGCTTATATAAATATCCTCTTAATTTTGCA
246 GTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGCA
* * * * * * **
51414083 TTCAATCAAATATTGGTAGGGCTGTTTGGCTGAGTAGTTTGGCATAATAGTCCATTTCATCTTAA
311 TTCAATCAAATTTTGGCAGGGCAGTTTGGCTG-GTAGTTTGGCATGACAGTCCATTTCGTCCCAA
*
51414148 TTTGAATGTTTATAGA
375 TTTGAATGCTTATAGA
** * * * * * ** * * * *
51414164 AATGAACTTTTAATATTGTATTCAATCAAATATTGGCACGATAGTTGGGCTGGATAGTTTGACTT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* *
51414229 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTCAATC-G
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
* * ** *
51414293 ATTTT------G--G--TAGCT---AAGTTTGGCATGACAGTCCATTTTTTCCCAATTT-AAAGT
131 ATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGT
* * *
51414344 TTATCGAAATGTCCTATTAATTTTGCATTCAATCAAATTTTGGCTGGGAAATTTGGCTGGGTAGT
196 TTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGG-T-----A-------GGGAAGT
* * ** * * * *
51414409 TTAGCATGACAATCCATTTCATCCAAATTTGAACT-CTTATAGAAATGTCATCTTAATTTTTCAT
248 TTGGCATGACAGTCCATTTTGTCCCAATTTGAA-TGTTTATAGAAATGTCCTCTTAATTTTGCAT
* ** * * * *
51414473 TTAATCAAATTTTGGCTAGGATA-TTTTGTTATGTAGTTTGGCATAACAGTCCATTTCGTCCCAA
312 TCAATCAAATTTTGGC-AGGGCAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAA
51414537 TTTGAATGCTTATAGA
375 TTTGAATGCTTATAGA
* * * **** * * *
51414553 TATGTCATCTTAATTTTGCATTCAATC-AATTTTTCCTGGGAAGTTT-TCTGGGTAGTTTTGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * ** *
51414616 GACAG-CCAATTTCATCCCAATTTGAATGTTTATTGAAATACCCTCTTAATTTTGCATTTAATCA
66 GACAGTCC-ATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCA
* * * * * * * * * *
51414680 AATCTTGGTAGGGAAATTTGGCTGGGTATTTTAGCATGACTGTCCATTTCATCCCAGTTTGAACT
130 AATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAA-T
* ** *
51414745 -TTTATAGAAATGTCAC-CTTAATTTTGCATTCAATCAAATTTTTTGCGGGGTTA-TTTGGCATG
194 GTTTATAGAAATGTC-CTCTTAATTTTGCATTCAATCAAA-TTTTGGTAGGG-AAGTTTGGCATG
** ** * * * * *
51414807 GTA-TCCCATTTCATCCCAATTTGAATGCTTATAGACATGTCTTATTAATTTTGCATTTAATC-A
256 ACAGT-CCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
* * * * * *
51414870 ATATTGGAAGGGAAGTGTT-TCTAGGTAGTTTGGCATGACAGTCCGTTTAGTCCCAATTTGAATG
320 ATTTTGGCAGGGCAGT-TTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATG
51414934 CTTATAGA
383 CTTATAGA
* * * * * * *
51414942 ATTGTCCTCTGAATTTTGTATT-AATC-AAT-TTTGCAGGGTAGTTTGGCTGGGTAGGCTT-GCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTA-GTTTGGCA
*
51415003 TGACAGTCCATTTCGTACCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCA
* * * * ** *
51415067 AATTGTAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATTGTCCATTTCGTCCCATTTTGAATG
130 AATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATG
* *
51415132 CTTATAG-AATGTCCTTTTAATTTTGCATTCAATC-AATTTTGGCAGGGTAGTTTGGTTGGATAG
195 TTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT-----GGTA-----G--GGA-AG
** ** * * * * * *
51415195 TTTTCCATGACAGTCCACGTCGT-CTAAGTTAGAATGTTTATAGAAATATCATCTTAATTTTGAA
247 TTTGGCATGACAGTCCATTTTGTCCCAA-TTTGAATGTTTATAGAAATGTCCTCTTAATTTTGCA
* * *
51415259 TTCAATCAAATTTTGGCAGGGCGGTTTGGCTGAGTAGTTTGGCATGACAGTCCGTTTCATCCCAA
311 TTCAATCAAATTTTGGCAGGGCAGTTTGGCTG-GTAGTTTGGCATGACAGTCCATTTCGTCCCAA
* * *
51415324 CTTGAATGTTTATAGT
375 TTTGAATGCTTATAGA
* *
51415340 AATGTTCTCTTAATTTTGCATTCAATCAAATTTTGGCAA-GG-A------------AGTTTGGCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGG-AAGGGCAGTTTGGCTGGGTAGTTTGGCA
* * * * * *
51415391 TGATAGTCCATTTCGTCCCAATTTGAATGCTTTTAGAAATATCCTCTTAAATTTACACTCAATCA
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCA
* * * * *
51415456 AATTTTGGC-AGGACAATTTGGCT-GGTAGTTTTGCATGACAGTTCATTTCATCCCAATTTTAAT
130 AATTTTGGCAAGG-CAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAAT
* * * *
51415519 -TCTTTTA-ATAATGTCCTCTTAATTTTGCATTCAATCAATTTCAGTAGAGCAGTTTTGTCGGGT
194 GT-TTATAGA-AATGTCCTCTTAATTTTGCATTCAATCAA----A-T-------TTTGGTAGGGA
* * * * * *
51415582 AGTTTGGCATGACAGTCCATTTTGTACCGATTTAAATGTTTATAGAAATGTCTTCTTAATTTGGA
245 AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * *
51415647 ATTCAATAAAATTTTGG-A----A-----G--GGTAGTTTGGCTTGACAATCAATTTTGTCCCAA
310 ATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAA
51415700 TTTGAATGCTTATAGA
375 TTTGAATGCTTATAGA
* * * * **
51415716 AATGTCTTCTTAATTTTGAATTCAACCAAATATTGGCAA-GGTAGTTTGGCTCCGTAGTTTGGCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGG-AAGGGCAGTTTGGCTGGGTAGTTTGGCA
* * * * * *
51415780 TGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATATCCTTTTAATTATGTATTTAATCA
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCA
* * * * *
51415845 AA---T--------A--TTGGCAGGGTAATTTGGTATGATAGTCCATTTCGTCCTAATTTGAATG
130 AATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATG
* * * * *
51415897 CTTATAGAAATGTTCTCTTAATTTTGCATTCAAT-TAGTTTTGGTAGGGAGGTTTGG
195 TTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGAAGTTTGG
51415953 TTGGGTAGTT
Statistics
Matches: 3666, Mismatches: 608, Indels: 515
0.77 0.13 0.11
Matches are distributed among these distances:
362 3 0.00
363 86 0.02
364 100 0.03
369 1 0.00
371 1 0.00
372 1 0.00
376 86 0.02
377 182 0.05
378 7 0.00
379 1 0.00
380 1 0.00
381 2 0.00
382 1 0.00
383 20 0.01
384 5 0.00
385 4 0.00
386 32 0.01
387 199 0.05
388 324 0.09
389 900 0.25
390 649 0.18
391 113 0.03
392 2 0.00
393 5 0.00
394 154 0.04
395 23 0.01
396 24 0.01
397 57 0.02
398 148 0.04
399 70 0.02
400 127 0.03
401 33 0.01
402 105 0.03
403 45 0.01
404 132 0.04
405 5 0.00
408 1 0.00
409 1 0.00
413 2 0.00
415 1 0.00
417 12 0.00
418 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (390 bp):
AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
ATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGT
TTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGAAGTTTGGCATGACAGT
CCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTG
GCAGGGCAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
Found at i:51412112 original size:87 final size:88
Alignment explanation
Indices: 51411976--51412330 Score: 416
Period size: 88 Copynumber: 4.1 Consensus size: 88
51411966 TTGGTTGGGT
* * * * * *
51411976 AGTTTGGCTTGATAGTCCATTTCGTCCCAATTTGAATGCTTATTGAAATGTCTTCTTAATTTTGC
1 AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAAAGCTTATAGAAATGTCCTCTTAATTTTGC
51412041 ATTCAATC-AATTTTGGCAGGGA
66 ATTCAATCAAATTTTGGCAGGGA
* *
51412063 AGTTTGGCATGACAATCCATTTTGTCCCAATTTGAAAGTTTATTA-AAATGTCCTCTTAATTTTG
1 AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAAAGCTTA-TAGAAATGTCCTCTTAATTTTG
** *
51412127 CATTCAATCAAATTTTGGTTGGGT
65 CATTCAATCAAATTTTGGCAGGGA
* * ** **
51412151 AGTTTGGCATGACCGTCCATTTCT-TCCAAATTTGAACTCTTATAGAAATGTTATCTTAATTTTG
1 AGTTTGGCATGACAGTCCATTT-TGTCCCAATTTGAAAGCTTATAGAAATGTCCTCTTAATTTTG
* * **
51412215 CAGTCAGTCAAATTTTGGCA-AAA
65 CATTCAATCAAATTTTGGCAGGGA
* *
51412238 CAGTTTGGCATGATAGTCCGTTTTGTCCCAATTTGAATA-CTTATAGAAATGTCCTCTTAATTTT
1 -AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAA-AGCTTATAGAAATGTCCTCTTAATTTT
*
51412302 GCATTCAATC-AATTTTGGCAGGTA
64 GCATTCAATCAAATTTTGGCAGGGA
51412326 AGTTT
1 AGTTT
51412331 TGCTGGGTAG
Statistics
Matches: 223, Mismatches: 37, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
87 81 0.36
88 141 0.63
89 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.41
Consensus pattern (88 bp):
AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAAAGCTTATAGAAATGTCCTCTTAATTTTGC
ATTCAATCAAATTTTGGCAGGGA
Found at i:51412158 original size:289 final size:290
Alignment explanation
Indices: 51411774--51416054 Score: 2719
Period size: 289 Copynumber: 14.7 Consensus size: 290
51411764 TTGGTTGGAT
* * * * * *
51411774 AGTTTGCCATGACAGTCCATTTTGTCCCAATTTGAATGCTTATAAAAATATCCTCTTAATTTTTC
1 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * ** *
51411839 ATTTAATCAAATATTGGAAGGGTTGTTTGGCTAGGTAGTTTGGCATGGTAGTCCATTTTGTCCCA
66 ATTCAATCAAATTTTGGTAGGGTAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTCGTCCCA
* * * * *
51411904 ATTTGAATGTTTATAGAAATGTCCTTTTAATATTACATTCTAA-CAAATATTGGCAAGGCAGTTT
131 ATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTC-AATCAAATTTTGGCAAGGCAGTTT
* * * * *
51411968 GGTTGGGTAGTTTGGCTTGATAGTCCATTTCGTCCCAATTTGAATGCTTATTGAAATGTCTTCTT
195 GGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTT
51412033 AATTTTGCATTCAATC-AATTTTGGCAGGGA
260 AATTTTGCATTCAATCAAATTTTGGCAGGGA
* * *
51412063 AGTTTGGCATGACAATCCATTTTGTCCCAATTTGAAAGTTTATTA-AAATGTCCTCTTAATTTTG
1 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTA-TAGAAATGTCCTCTTAATTTTG
* * *
51412127 CATTCAATCAAA-TTT--T---G--G-TT-G---GGTAGTTTGGCATGACCGTCCATTTCTTCCA
65 CATTCAATCAAATTTTGGTAGGGTAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTCGTCCC
** * *
51412179 AATTTGAACT-CTTATAGAAATGTTATCTTAATTTTGCAGTCAGTCAAATTTTGGCAA---A---
130 AATTTGAA-TGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAAGGCAGTT
* * * * *
51412237 --AC-----AGTTTGGCATGATAGTCCGTTTTGTCCCAATTTGAATACTTATAGAAATGTCCTCT
194 TGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCT
*
51412295 TAATTTTGCATTCAATC-AATTTTGGCAGGTAAGTTTTGCTGGGT
259 TAATTTTGCATTCAATCAAATTTTGGC-----A--------GGGA
** * *
51412339 AGTTTGGCATGACAGTTTATTTCGTCCCAATTTGAATGTTTATCGAAATATCCTCTTAATTTTGC
1 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * * ** * * **
51412404 ATTTAATCAAATTTTGGCAAGGAAATTTGGCTAGACATTTTGGAATGACTA-TCCATTTTATCCC
66 ATTCAATCAAATTTTGGTAGGGTAGTTTGGCTAGGTAGTTTGGCATGAC-AGTCCATTTCGTCCC
* * * *** *
51412468 AATTTAAACT-CTTATA-AAACTGTTCTCTTAATTTTGCATTCAATCAATTTTTGGTTGGGTAGT
130 AATTTGAA-TGCTTATAGAAA-TGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAAGGCAGT
* * * * *
51412531 TTGGCTGGGTAGTTTGGCATGGCA-TCCCATTTCATTCCAATTTGAATGCTTATAGAAATATTCT
193 TTGGCTGGGTAGTTTGGCATGACAGT-CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
*
51412595 CTTAATTTTACATTCAATC-AATTTTGGCAGGGCAA
257 CTTAATTTTGCATTCAATCAAATTTTGGCAGGG--A
* ** **
51412630 TTTGGTTAGGTAATTTGGCATGACAGTCCATTTCGCCCCAATTTGAATACTTATAGAAATGTTTT
1 -------A-G---TTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCT
* * * * * *
51412695 GTTAAATTTGAATTCAATCCAATTTTGGTAGGGTAGTTTGGCTTGGGTAGTTTGGCATGATAGTC
55 CTTAATTTTGCATTCAATCAAATTTTGGTAGGGTAGTTTGGC-TAGGTAGTTTGGCATGACAGTC
* * *
51412760 CATCTT-TTCCAAATTTGAATGCTTATAGAAATTTCCTCTTAATTTTG-ATTTCAATCAAATTTT
119 CAT-TTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCA-TTCAATCAAATTTT
* * * * * *
51412823 -GAAAGAGAAGGTTGACTGGGTAGTTTGGCCTGACAGTCCGTTTCGTCCCAATTTGAATGCTTAT
182 GGCAAG-GCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTAT
* *
51412887 AGAAATGTCCTCTTAATTTTGCATTCAATCCAATTTTGGCAAGGCAATGGGT
246 AGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT-----GGC-A-GGGA
* *
51412939 AGTTTGGCATGACAGTACATTTCATCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
1 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * ** * * ** *
51413004 ATTTAATCAAATATTGGTAGGACAGATTGGCTGGGTAGTTTGATATGACAATCCATTTCGTCCCA
66 ATTCAATCAAATTTTGGTAGGGTAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTCGTCCCA
* * * * * * * *
51413069 ATTTAAATACATATAGAAA--T-ATCTTAATTTTGCATTCCATC-AATTTTGGTAGGGCAGTTTC
131 ATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAAGGCAGTTTG
* * * * *
51413130 GCTGGGTAGATTGACATGACAGTCCATTTCGTCCTAATTTTAATGTTTATAGAAATGTCCTCTTA
196 GCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTA
*
51413195 ATTTTGCATTCAATCAAATTTAGGCAGGGTAGTTTTGCTA
261 ATTTTGCATTCAATCAAATTTTGGCA--G--G----G--A
* * * * * *
51413235 GGTAGTTTGGCATAACAGTCAATTTTGTCCCAATTTTAATGCTTATAGAAATGTCTTCTTAATTT
1 ---AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTT
* * ** * * * *
51413300 TACATTCAATCTAATTTTGGTAGGCCAGTTTGGC-CGGATAGTTTGCCATTACAGTACATTTCGT
63 TGCATTCAATCAAATTTTGGTAGGGTAGTTTGGCTAGG-TAGTTTGGCATGACAGTCCATTTCGT
* * * * * ** **
51413364 CCCGATTTGAATGCGTACAGAAATGTTCTCTTAATTTTGCATTTAATCAAATTTTAACAACACAG
127 CCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAAGGCAG
* * * * *
51413429 TTTGGCTGGGTAGTTCGGCATGACAGTCCATTTCGTCCAAATTTGAGTGCCTATTGAAATGTCCT
192 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
** *
51413494 CTTAATTTTGCATTCAATCAAA-TTTGATATGGA
257 CTTAATTTTGCATTCAATCAAATTTTGGCAGGGA
* * * * * *
51413527 AGTTTGGCATGACAGTTCATTTCTTCCTAATTTGAATGTTTATAGAAATATTCTCTTAATTTTAC
1 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * **** * * *
51413592 ATTCAATCAAATTTCGGCACAACAGTTTGG-TTGGATAGTTTGGCATGACAGTCTATTTTGTCCC
66 ATTCAATCAAATTTTGGTAGGGTAGTTTGGCTAGG-TAGTTTGGCATGACAGTCCATTTCGTCCC
* * * * * * * **
51413656 AATTTGAATGCTGATAGAAATATTCTCTTAATGTTGCATTCAGTCAAATATTGGCAGGGTTGTTT
130 AATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAAGGCAGTTT
** * * *
51413721 GGCCAGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAATGTTTATAGAAATGTCCTCTT
195 GGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTT
51413786 AATTTTGCATTCAATCAAATATTTGTAGGCCAGTTTGGCTA
260 AATTTTGCATTCAATC-AA-ATTT-T-GG-CAG---GG--A
* * * * * * *
51413827 GGTAGTTTGGCATGATAGTCTATTTCGTCCCAATTTTGACA--CTTACAAAAATTTCCTTTTAAT
1 ---AGTTTGGCATGACAGTCCATTTCGTCCCAA-TTTGA-ATGTTTATAGAAATGTCCTCTTAAT
* * *
51413890 TTTGCATACAATCAAA--TT--T----TA-----GCTAGGTAGTTTGGCATGACATTCCATTTCA
61 TTTGCATTCAATCAAATTTTGGTAGGGTAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTCG
* * * *
51413942 TCCCAATTTGAATGTTTATAGAAATGTTCTCTTAATTTTGCATTCAATTAAATTTTGGCAGGGCA
126 TCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAAGGCA
* * * * * * *
51414007 ATTTCGCTTGATAGTTTGGCATG-CAGTCCATTTTGTCCC-ATTTGAATGCTTATATAAATATCC
191 GTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCC
*
51414070 TCTTAATTTTGCATTCAATCAAATATTGGTAGGGCTGTTTGGCTGA
256 TCTTAATTTTGCATTCAATCAAAT-TT--T--GGC----AGG--GA
* * * ** ** * *
51414116 GTAGTTTGGCATAATAGTCCATTTCATCTTAATTTGAATGTTTATAGAAATGAACTTTTAATATT
1 --AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTT
* * * * * * * *
51414181 GTATTCAATCAAATATTGGCACGATAGTTGGGCT-GGATAGTTTGACTTGACAGTCCATTTCGTC
64 GCATTCAATCAAATTTTGGTAGGGTAGTTTGGCTAGG-TAGTTTGGCATGACAGTCCATTTCGTC
* *
51414245 CCAATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTCAATC-GATTTT------G--G-
128 CCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAAGGCAGT
* * ** * * * *
51414300 -TAGCT---AAGTTTGGCATGACAGTCCATTTTTTCCCAATTT-AAAGTTTATCGAAATGTCCTA
193 TTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTC
*
51414360 TTAATTTTGCATTCAATCAAATTTTGGCTGGGAAATTTGGCTGGGT
258 TTAATTTTGCATTCAATCAAATTTTGGC------A-------GGGA
* * * * * * *
51414406 AGTTTAGCATGACAATCCATTTCATCCAAATTTGAACT-CTTATAGAAATGTCATCTTAATTTTT
1 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAA-TGTTTATAGAAATGTCCTCTTAATTTTG
* * * * * *
51414470 CATTTAATCAAATTTTGGCTAGGATA-TTTTGTTATGTAGTTTGGCATAACAGTCCATTTCGTCC
65 CATTCAATCAAATTTTGG-TAGGGTAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTCGTCC
* * ** ** *
51414534 CAATTTGAATGCTTATAGATATGTCATCTTAATTTTGCATTCAATC-AATTTTTCCTGGGAAGTT
129 CAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAAGGCAGTT
* * * * * **
51414598 T-TCTGGGTAGTTTTGCATGACAG-CCAATTTCATCCCAATTTGAATGTTTATTGAAATACCCTC
194 TGGCTGGGTAGTTTGGCATGACAGTCC-ATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTC
* * *
51414661 TTAATTTTGCATTTAATCAAATCTTGGTAGGGAA
258 TTAATTTTGCATTCAATCAAATTTTGGCAGGG-A
* * * *
51414695 ATTTGGCTGGGTATTTTAGCATGACTGTCCATTTCATCCCAGTTTGAACT-TTTATAGAAATGTC
1 A---------G---TTTGGCATGACAGTCCATTTCGTCCCAATTTGAA-TGTTTATAGAAATGTC
* * **
51414759 AC-CTTAATTTTGCATTCAATCAAATTTT--TTGCG--G---GG-T---TA-TTTGGCATGGTA-
53 -CTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGTAGTTTGGCTAGGTAGTTTGGCATGACAG
* * * * * *
51414810 TCCCATTTCATCCCAATTTGAATGCTTATAGACATGTCTTATTAATTTTGCATTTAATC-AATAT
117 T-CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * * *
51414874 TGG-AAGGGAAGTGTT-TCTAGGTAGTTTGGCATGACAGTCCGTTTAGTCCCAATTTGAATGCTT
181 TGGCAA-GGCAGT-TTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTT
* * * *
51414937 ATAGAATTGTCCTCTGAATTTTGTATT-AATC-AATTTT-GCAGGGT
244 ATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGA
* *
51414981 AGTTTGGCTGGGTAGGCTTGCATGACAGTCCATTTCGTACCAATTTGAATGCTTATAGAAATGTC
1 AG--T---T---T--G---GCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTC
* * * * ** * **
51415046 CTCTTAATTTTGCATTCAATC-AATTGTAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATTGT
53 CTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGTAGTTTGGCTAGGTAGTTTGGCATGACAGT
* *
51415110 CCATTTCGTCCCATTTTGAATGCTTATAG-AATGTCCTTTTAATTTTGCATTCAATC-AATTTTG
118 CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTG
* * * * ** ** * * *
51415173 GCAGGGTAGTTTGGTTGGATAGTTTTCCATGACAGTCCACGTCGT-CTAAGTTAGAATGTTTATA
183 GCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAA-TTTGAATGCTTATA
* * *
51415237 GAAATATCATCTTAATTTTGAATTCAATCAAATTTTGGCAGGGCGGTTTGGCTGA
247 GAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCA---------GG--GA
* * * * *
51415292 GTAGTTTGGCATGACAGTCCGTTTCATCCCAACTTGAATGTTTATAGTAATGTTCTCTTAATTTT
1 --AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTT
* *
51415357 GCATTCAATCAAATTTTGGCA----A----GG--A---AGTTTGGCATGATAGTCCATTTCGTCC
64 GCATTCAATCAAATTTTGGTAGGGTAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTCGTCC
* * * * * *
51415409 CAATTTGAATGCTTTTAGAAATATCCTCTTAAATTTACACTCAATCAAATTTTGGC-AGGACAAT
129 CAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAAGG-CAGT
* * * * * *
51415473 TTGGCT-GGTAGTTTTGCATGACAGTTCATTTCATCCCAATTTTAATTCTTTTA-ATAATGTCCT
193 TTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA-AATGTCCT
*
51415536 CTTAATTTTGCATTCAATC-AATTTCAGTAGAGCAGTTTTGTCGGGT
257 CTTAATTTTGCATTCAATCAAATTT---T-G-GCA--------GGGA
* * * * * * *
51415582 AGTTTGGCATGACAGTCCATTTTGTACCGATTTAAATGTTTATAGAAATGTCTTCTTAATTTGGA
1 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * *
51415647 ATTCAATAAAATTTTGG-A----A-----G---GGTAGTTTGGCTTGACAATCAATTTTGTCCCA
66 ATTCAATCAAATTTTGGTAGGGTAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTCGTCCCA
* * * * *
51415699 ATTTGAATGCTTATAGAAATGTCTTCTTAATTTTGAATTCAACCAAATATTGGCAAGGTAGTTTG
131 ATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAAGGCAGTTTG
** * * *
51415764 GCTCCGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATATCCTTTTA
196 GCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTA
* * * *
51415829 ATTATGTATTTAATCAAATATTGGCAGGGTA
261 ATTTTGCATTCAATCAAATTTTGGCAGGG-A
* * * * *
51415860 A-TTTGGTATGATAGTCCATTTCGTCCTAATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGC
1 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * * * * *
51415924 ATTCAAT-TAGTTTTGGTAGGG-AGGTTTGGTTGGGTAGTTTGACATGACAGTCCATTTCATTCT
66 ATTCAATCAAATTTTGGTAGGGTA-GTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTCGTCCC
*** * * * * *
51415987 AATTTGAAAATTTATCA-AAATGTCCTTTTAATTTTGAATTTAATCAAATTTTGGCTAGGTAGTT
130 AATTTGAATGCTTAT-AGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAAGGCAGTT
51416051 TGGC
194 TGGC
51416055 ATGATTGTAC
Statistics
Matches: 3143, Mismatches: 585, Indels: 528
0.74 0.14 0.12
Matches are distributed among these distances:
263 76 0.02
268 1 0.00
273 1 0.00
275 2 0.00
276 147 0.05
277 67 0.02
278 1 0.00
279 2 0.00
280 3 0.00
281 1 0.00
282 2 0.00
283 4 0.00
285 7 0.00
286 15 0.00
287 89 0.03
288 505 0.16
289 689 0.22
290 199 0.06
291 8 0.00
292 12 0.00
293 97 0.03
294 27 0.01
295 5 0.00
296 10 0.00
297 136 0.04
298 130 0.04
299 131 0.04
300 98 0.03
301 193 0.06
302 174 0.06
303 278 0.09
304 17 0.01
305 2 0.00
308 1 0.00
309 5 0.00
310 1 0.00
311 5 0.00
313 2 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (290 bp):
AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
ATTCAATCAAATTTTGGTAGGGTAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTCGTCCCA
ATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAAGGCAGTTTG
GCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTA
ATTTTGCATTCAATCAAATTTTGGCAGGGA
Found at i:51412539 original size:13 final size:13
Alignment explanation
Indices: 51412517--51412548 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
51412507 TCAATCAATT
*
51412517 TTTGGTTGGGTAG
1 TTTGGCTGGGTAG
51412530 TTTGGCTGGGTAG
1 TTTGGCTGGGTAG
51412543 TTTGGC
1 TTTGGC
51412549 ATGGCATCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.06, G:0.44, T:0.44
Consensus pattern (13 bp):
TTTGGCTGGGTAG
Found at i:51413595 original size:87 final size:87
Alignment explanation
Indices: 51413440--51413605 Score: 233
Period size: 87 Copynumber: 1.9 Consensus size: 87
51413430 TTGGCTGGGT
* * * *
51413440 AGTTCGGCATGACAGTCCATTTCGTCCAAATTTGAGTGCCTATTGAAATGTCCTCTTAATTTTGC
1 AGTTCGGCATGACAGTCCATTTCGTCCAAATTTGAATGCCTATAGAAATATCCTCTTAATTTTAC
51413505 ATTCAATCAAATTTGATATGGA
66 ATTCAATCAAATTTGATATGGA
* * * * ** *
51413527 AGTTTGGCATGACAGTTCATTTCTTCCTAATTTGAATGTTTATAGAAATATTCTCTTAATTTTAC
1 AGTTCGGCATGACAGTCCATTTCGTCCAAATTTGAATGCCTATAGAAATATCCTCTTAATTTTAC
51413592 ATTCAATCAAATTT
66 ATTCAATCAAATTT
51413606 CGGCACAACA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
87 68 1.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (87 bp):
AGTTCGGCATGACAGTCCATTTCGTCCAAATTTGAATGCCTATAGAAATATCCTCTTAATTTTAC
ATTCAATCAAATTTGATATGGA
Found at i:51413977 original size:88 final size:88
Alignment explanation
Indices: 51413823--51413997 Score: 212
Period size: 88 Copynumber: 2.0 Consensus size: 88
51413813 GGCCAGTTTG
* * * *
51413823 GCTAGGTAGTTTGGCATGATAGTCTATTTCGTCCCAATTTTGACACTTACAAAAATTTCCTTTTA
1 GCTAGGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTTGACACTTACAAAAATTTCCTCTTA
51413888 ATTTTGCATACAATCAAATTTTA
66 ATTTTGCATACAATCAAATTTTA
* * * *
51413911 GCTAGGTAGTTTGGCATGACATTCCATTTCATCCCAA-TTTGA-ATGTTTATAGAAATGTT-CTC
1 GCTAGGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTTGACA--CTTACAAAAAT-TTCCTC
* *
51413973 TTAATTTTGCATTCAATTAAATTTT
63 TTAATTTTGCATACAATCAAATTTT
51413998 GGCAGGGCAA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
86 1 0.01
87 5 0.07
88 66 0.89
89 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (88 bp):
GCTAGGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTTGACACTTACAAAAATTTCCTCTTA
ATTTTGCATACAATCAAATTTTA
Found at i:51414384 original size:87 final size:87
Alignment explanation
Indices: 51414219--51414386 Score: 230
Period size: 87 Copynumber: 1.9 Consensus size: 87
51414209 TGGGCTGGAT
* * * *
51414219 AGTTTGACTTGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGC
1 AGTTTGACATGACAGTCCATTTCGTCCCAATTTGAAAGCTTATAGAAATGTCCTATTAATTTTGC
*
51414284 ATTCAATCGATTTTGGTAGCTA
66 ATTCAATCAATTTTGGTAGCTA
* ** * *
51414306 AGTTTGGCATGACAGTCCATTTTTTCCCAATTT-AAAGTTTATCGAAATGTCCTATTAATTTTGC
1 AGTTTGACATGACAGTCCATTTCGTCCCAATTTGAAAGCTTATAGAAATGTCCTATTAATTTTGC
51414370 ATTCAATCAAATTTTGG
66 ATTCAATC-AATTTTGG
51414387 CTGGGAAATT
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
86 34 0.49
87 36 0.51
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.42
Consensus pattern (87 bp):
AGTTTGACATGACAGTCCATTTCGTCCCAATTTGAAAGCTTATAGAAATGTCCTATTAATTTTGC
ATTCAATCAATTTTGGTAGCTA
Done.