Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 157 of 352
Found at i:51415094 original size:488 final size:485
Alignment explanation
Indices: 51411385--51416256 Score: 2244
Period size: 490 Copynumber: 10.0 Consensus size: 485
51411375 TTGGCTGGAT
* ** * * * *
51411385 AGTTTAGCATGACAGTCCATTTTGTCCCAATTTGAATA-TTTATAAAAATATCCTCTTAATTTTG
1 AGTTTGGCATGACAGTCCATTTCATCCCAATTT-AA-AGCTTATAGAAATGTCCTATTAATTTTG
* *** * ** * * *
51411449 CATTTAATCAAATATTGGAAGGGCTGTTTGGCTGGGTAGTTTGGCATGGTAGTCTATTCCATCCC
64 CATTCAATCAAATATTGGAAGGGAAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTCATCCC
* * * * ** * * *
51411514 AATTTGAATGTTTATAGAAATGTCATTTTAATATTACATTCAATCAAATATTGGCAAGGCAGTTT
129 AATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGTATT-AATC-AATTTTGGCAGGGTA-TTT
* * * * *
51411579 GGCTGGGTAGTTTGGCTTGACAGTCCATTTCGTTCCAATTTGAATGTTTAAAGAAATGTCCT-TT
191 CGCTAGGTAGTTTGGCATGACAGTCCATTTCG-TCCAATTTGAATGCTTATAGAAATGTCCTCTT
* * * * * *
51411643 TATTTTGCATTCAATCAATTT----TG---G--T---AGGGAAGTTTGGCATGACAGTCTATTTT
255 AATTTTGCATTCAATCAATTTAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATAGTCCATTTC
* * * * *
51411696 GTCCCAATTTGAAAGTTTATTA-AAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGG
320 ATCCCAATTTGAATGTTTA-TAGAAAT-ACCTTTTAATTTTGCATTCAATCAAATATTGGCAGGG
* * * * * * * *
51411760 CAGTTTGGTTGGATAGTTTGCCATGACAGTCCATTTTGTCCCAATTTGAATGCTTATAAAAATAT
383 AAGTTTGGCTGGATATTTTG-CATGACAGTCCATTTCGTCCCAGTTTGAATGTTTATAGAAATGT
* * * *
51411825 CCTCTTAATTTTTCATTTAATCAAATATTGGAAGGGTTGTTTGGCTAGGT-
447 CATCTTAATTTTGCATTCAATC-AA-A-T-------TT-TTTGG-TAGCTA
** ** * * * * *
51411875 AGTTTGGCATGGTAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTTTTAATATTAC
1 AGTTTGGCATGACAGTCCATTTCATCCCAATTT-AAAGCTTATAGAAATGTCCTATTAATTTTGC
* * * * * * * *
51411940 ATTCTAA-CAAATATTGGCAA-GGCAGTTTGGTTGGGTAGTTTGGCTTGATAGTCCATTTCGTCC
65 ATTC-AATCAAATATTGG-AAGGGAAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTCATCC
* * *
51412003 CAATTTGAATGCTTATTGAAATGTCTTCTTAATTTTGCATTCAATCAATTTTGGCA-GG------
128 CAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGTATT-AATCAATTTTGGCAGGGTATTTC
* * * *
51412061 G--A---AGTTTGGCATGACAATCCATTTTGTCCCAATTTGAAAGTTTATTA-AAATGTCCTCTT
192 GCTAGGTAGTTTGGCATGACAGTCCATTTCGT-CCAATTTGAATGCTTA-TAGAAATGTCCTCTT
* **
51412120 AATTTTGCATTCAATC-A---A--AT-----TTTGGTTGGGTAGTTTGGCATGACCGTCCATTTC
255 AATTTTGCATTCAATCAATTTAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATAGTCCATTTC
* * * ** * * * *
51412174 TTCCAAATTTGAACT-CTTATAGAAAT-GTTATCTTAATTTTGCAGTCAGTCAAATTTTGGCA-A
320 ATCCCAATTTGAA-TGTTTATAGAAATACCT-T-TTAATTTTGCATTCAATCAAATATTGGCAGG
* * * * **
51412236 AACAGTTTGGC-----A---TG-AT---AGTCCGTTTTGTCCCAATTTGAATACTTATAGAAATG
382 GA-AGTTTGGCTGGATATTTTGCATGACAGTCCATTTCGTCCCAGTTTGAATGTTTATAGAAATG
* ** *
51412289 TCCTCTTAATTTTGCATTCAATC-AATTTTGGCAGGTAAGTTTTGCTGGGT
446 TCATCTTAATTTTGCATTCAATCAAATTTT--TTGGT-A-----GCT---A
** * * * * * *
51412339 AGTTTGGCATGACAGTTTATTTCGTCCCAATTTGAATGTTTATCGAAATATCCTCTTAATTTTGC
1 AGTTTGGCATGACAGTCCATTTCATCCCAATTT-AAAGCTTATAGAAATGTCCTATTAATTTTGC
* * ** * * * *
51412404 ATTTAATCAAATTTTGGCAA-GGAAATTTGGCTAGACATTTTGGAATGACTATCCATTTTATCCC
65 ATTCAATCAAATATTGG-AAGGGAAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTCATCCC
* * * **
51412468 AATTTAAACT-CTTATA-AAACTGTTCTCTTAATTTTGCATTCAATCAATTTTTGGTTGGGTAGT
129 AATTTGAA-TGCTTATAGAAA-TGTCCTCTTAATTTTGTATT-AATCAA-TTTTGGCAGGGTA-T
* * * * * *
51412531 TTGGCTGGGTAGTTTGGCATGGCA-TCCCATTTCATTCCAATTTGAATGCTTATAGAAATATTCT
189 TTCGCTAGGTAGTTTGGCATGACAGT-CCATTTC-GTCCAATTTGAATGCTTATAGAAATGTCCT
* * * * * * * * *
51412595 CTTAATTTTACATTCAATCAATTTTGGCAGGGCAATTTGGTTAGGTAATTTGGCATGACAGTCCA
252 CTTAATTTTGCATTCAATCAA-TTTAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATAGTCCA
** ** *** * * * * *
51412660 TTTCGCCCCAATTTGAATACTTATAGAAATGTTTTGTTAAATTTGAATTCAATCCAATTTTGGTA
316 TTTCATCCCAATTTGAATGTTTATAGAAATACCTT-TTAATTTTGCATTCAATCAAATATTGGCA
* * * * * * * *
51412725 GGGTAGTTTGGCTTGGGTAGTTTGGCATGATAGTCCATCTT-TTCCAAATTTGAATGCTTATAGA
380 GGGAAGTTTGGC-TGGATA-TTTTGCATGACAGTCCAT-TTCGTCCCAGTTTGAATGTTTATAGA
* * ** * *
51412789 AATTTCCTCTTAATTTTG-ATTTCAATCAAATTTTGAAAGAGAAGGTTGACTGGGT
442 AATGTCATCTTAATTTTGCA-TTCAATCAAATTTT-------TTGGTAG-CT---A
* * * * *
51412844 AGTTTGGCCTGACAGTCCGTTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGC
1 AGTTTGGCATGACAGTCCATTTCATCCCAATTT-AAAGCTTATAGAAATGTCCTATTAATTTTGC
* * * * *
51412909 ATTCAATCCAATTTTGGCAA-GGCAA--T-G---GGTAGTTTGGCATGACAGTACATTTCATCCC
65 ATTCAATCAAATATTGG-AAGGGAAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTCATCCC
* * * * ** *
51412967 AATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGCATTTAATCAAATATTGGTAGGACAGATT
129 AATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGTA-TTAATC-AATTTTGGCAGGGTA-TTT
* * ** * * * * *
51413032 GGCTGGGTAGTTTGATATGACAATCCATTTCGTCCCAATTTAAATACATATAGAAA--T-ATCTT
191 CGCTAGGTAGTTTGGCATGACAGTCCATTTCGT-CCAATTTGAATGCTTATAGAAATGTCCTCTT
* * * * * * * * *
51413094 AATTTTGCATTCCATCAATTTTGGTAGGGCAGTTTCGCTGGGTAGATTGACATGACAGTCCATTT
255 AATTTTGCATTCAATCAA-TTTAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATAGTCCATTT
* * * * *
51413159 CGTCCTAATTTTAATGTTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAAT-TTAGGCAGG
319 CATCCCAATTTGAATGTTTATAGAAAT-ACCTTTTAATTTTGCATTCAATCAAATATT-GGCAGG
* * * * * * * * *
51413223 GTAGTTTTGCTAGG-TAGTTTGGCATAACAGTCAATTTTGTCCCAATTTTAATGCTTATAGAAAT
382 GAAGTTTGGCT-GGATA-TTTTGCATGACAGTCCATTTCGTCCCAGTTTGAATGTTTATAGAAAT
* * * * * *
51413287 GTCTTCTTAATTTTACATTCAATCTAATTTTGGTAGGCCAGTTTGGCCGGA
445 GTCATCTTAATTTTGCATTCAATCAAATTTT--T-TG---G--TAG-C-TA
* * * * * * * * * *
51413338 TAGTTTGCCATTACAGTACATTTCGTCCCGATTTGAATGCGTACAGAAATGTTCTCTTAATTTTG
1 -AGTTTGGCATGACAGTCCATTTCATCCCAATTT-AAAGCTTATAGAAATGTCCTATTAATTTTG
* * ** * * * *
51413403 CATTTAATCAAAT-TT-TAA-CAACACAGTTTGGCTGGGTAGTTCGGCATGACAGTCCATTTCGT
64 CATTCAATCAAATATTGGAAGGGA-A-A-TTTGGCTAGGTAGTTTGGCATGACAATCCATTTCAT
* * * * * *
51413465 CCAAATTTGAGTGCCTATTGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT-G-A---TA--
126 CCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGTATT-AATCAATTTTGGCAGGGTATT
* * * * * *
51413523 ----T-GGAAGTTTGGCATGACAGTTCATTTCTTCCTAATTTGAATGTTTATAGAAATATTCTCT
190 TCGCTAGGTAGTTTGGCATGACAGTCCATTTCGTCC-AATTTGAATGCTTATAGAAATGTCCTCT
* * ** * * * *
51413583 TAATTTTACATTCAATCAAATTTCGGCACAACAGTTTGGTTGGATAGTTTGGCATGACAGTCTAT
254 TAATTTTGCATTCAATC-AATTT-AGCATGACAGTTTGGCTGGGTAGTTTGGCATGATAGTCCAT
** * * * * * *
51413648 TTTGTCCCAATTTGAATGCTGATAGAAATATTCTCTTAATGTTGCATTCAGTCAAATATTGGCAG
317 TTCATCCCAATTTGAATGTTTATAGAAATA-CCTTTTAATTTTGCATTCAATCAAATATTGGCAG
** * * * * *
51413713 GGTTGTTTGGCCAGG-TAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAATGTTTATAGAAA
381 GGAAGTTTGG-CTGGATA-TTTTGCATGACAGTCCATTTCGTCCCAGTTTGAATGTTTATAGAAA
* * *
51413777 TGTCCTCTTAATTTTGCATTCAATCAAATATTTGTAGGCCAGTTTGGCTA
444 TGTCATCTTAATTTTGCATTCAATCAAAT-TTT-T-TG---G--TAGCTA
* * * * * * * *
51413827 GGTAGTTTGGCATGATAGTCTATTTCGTCCCAATTTTGACA-CTTACAAAAATTTCCTTTTAATT
1 ---AGTTTGGCATGACAGTCCATTTCATCCCAA-TTT-AAAGCTTATAGAAATGTCCTATTAATT
* * *
51413891 TTGCATACAATC-AA-A-T----------TTTAGCTAGGTAGTTTGGCATGACATTCCATTTCAT
61 TTGCATTCAATCAAATATTGGAAGGGAAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTCAT
* * * * *
51413943 CCCAATTTGAATGTTTATAGAAATGTTCTCTTAATTTTGCATTCAATTAAATTTTGGCAGGGCAA
126 CCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGTATT-AA-TCAATTTTGGCAGGG-TA
* * * * * *
51414008 TTTCGCTTGATAGTTTGGCATG-CAGTCCATTTTGTCCCATTTGAATGCTTATATAAATATCCTC
188 TTTCGCTAGGTAGTTTGGCATGACAGTCCATTTCGTCCAATTTGAATGCTTATAGAAATGTCCTC
* * * * * * *
51414072 TTAATTTTGCATTCAATCAAATATTGGTAGGGCTGTTTGGCTGAGTAGTTTGGCATAATAGTCCA
253 TTAATTTTGCATTCAATC-AAT-TTAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATAGTCCA
** * * *
51414137 TTTCATCTTAATTTGAATGTTTATAGAAATGAACTTTTAATATTGTATTCAATCAAATATTGGCA
316 TTTCATCCCAATTTGAATGTTTATAGAAAT-ACCTTTTAATTTTGCATTCAATCAAATATTGGCA
* * * * * *
51414202 -CGATAGTTGGGCTGGATAGTTTGACTTGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAA
380 GGGA-AGTTTGGCTGGATATTTTG-CATGACAGTCCATTTCGTCCCAGTTTGAATGTTTATAGAA
*
51414266 ATGTTC-TCTTAATTTTGCATTCAATC-GA--TTTTGGTAGCTA
443 ATG-TCATCTTAATTTTGCATTCAATCAAATTTTTTGGTAGCTA
** * *
51414306 AGTTTGGCATGACAGTCCATTTTTTCCCAATTTAAAGTTTATCGAAATGTCCTATTAATTTTGCA
1 AGTTTGGCATGACAGTCCATTTCATCCCAATTTAAAGCTTATAGAAATGTCCTATTAATTTTGCA
* ** * * *
51414371 TTCAATCAAATTTTGGCTGGGAAATTTGGCTGGGTAGTTTAGCATGACAATCCATTTCATCCAAA
66 TTCAATCAAATATTGGAAGGGAAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTCATCCCAA
* *
51414436 TTTGAACT-CTTATAGAAATGTCATCTTAATTTT-TCATTTAATCAAATTTTGGCTAGGATATTT
131 TTTGAA-TGCTTATAGAAATGTCCTCTTAATTTTGT-A-TTAATC-AATTTTGGC-AGGGTATTT
* * * * * *
51414499 TGTTATGTAGTTTGGCATAACAGTCCATTTCGTCCCAATTTGAATGCTTATAGATATGTCATCTT
191 CGCTAGGTAGTTTGGCATGACAGTCCATTTCGT-CCAATTTGAATGCTTATAGAAATGTCCTCTT
** * * * *
51414564 AATTTTGCATTCAATCAATTTTTCCTGGGA-AGTTT-TCTGGGTAGTTTTGCATGACAG-CCAAT
255 AATTTTGCATTCAATCAATTTAGCAT--GACAGTTTGGCTGGGTAGTTTGGCATGATAGTCC-AT
* * * * *
51414626 TTCATCCCAATTTGAATGTTTATTGAAATACCCTCTTAATTTTGCATTTAATCAAATCTTGGTAG
317 TTCATCCCAATTTGAATGTTTATAGAAATA-CCTTTTAATTTTGCATTCAATCAAATATTGGCAG
* * * *
51414691 GGAAATTTGGCTGGGTATTTTAGCATGACTGTCCATTTCATCCCAGTTTGAACT-TTTATAGAAA
381 GGAAGTTTGGCTGGATATTTT-GCATGACAGTCCATTTCGTCCCAGTTTGAA-TGTTTATAGAAA
* * * *
51414755 TGTCACCTTAATTTTGCATTCAATCAAATTTTTTGCG-GGGTT
444 TGTCATCTTAATTTTGCATTCAATCAAATTTTTTG-GTAGCTA
** * * *
51414797 A-TTTGGCATGGTA-TCCCATTTCATCCCAATTTGAATGCTTATAGACATGTCTTATTAATTTTG
1 AGTTTGGCATGACAGT-CCATTTCATCCCAATTT-AAAGCTTATAGAAATGTCCTATTAATTTTG
* * * * *
51414860 CATTTAATC-AATATTGGAAGGGAAGTGTT-TCTAGGTAGTTTGGCATGACAGTCCGTTT-AGTC
64 CATTCAATCAAATATTGGAAGGGAAAT-TTGGCTAGGTAGTTTGGCATGACAATCCATTTCA-TC
* *
51414922 CCAATTTGAATGCTTATAGAATTGTCCTCTGAATTTTGTATTAATCAATTTT-GCAGGGTAGTTT
127 CCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGTATTAATCAATTTTGGCAGGGTA-TTT
* * *
51414986 GGCTGGGTAGGCTT-GCATGACAGTCCATTTCGTACCAATTTGAATGCTTATAGAAATGTCCTCT
191 CGCTAGGTA-GTTTGGCATGACAGTCCATTTCGT-CCAATTTGAATGCTTATAGAAATGTCCTCT
*
51415050 TAATTTTGCATTCAATCAATTGTAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATTGTCCATT
254 TAATTTTGCATTCAATCAATT-TAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATAGTCCATT
* * * * *
51415115 TCGTCCCATTTTGAATGCTTATAG-AATGTCCTTTTAATTTTGCATTCAATC-AATTTTGGCAGG
318 TCATCCCAATTTGAATGTTTATAGAAAT-ACCTTTTAATTTTGCATTCAATCAAATATTGGCAGG
* * * ** ** * *
51415178 GTAGTTTGGTTGGATAGTTTTCCATGACAGTCCACGTCGTCTAAGTTAGAATGTTTATAGAAATA
382 GAAGTTTGGCTGGATA-TTTTGCATGACAGTCCATTTCGTCCCAGTTTGAATGTTTATAGAAATG
* ** *
51415243 TCATCTTAATTTTGAATTCAATCAAATTTTGGCAGGGCGGTTTGGCTGA
446 TCATCTTAATTTTGCATTCAATCAAATTTT------TTGG--TAGCT-A
* * * * * * *
51415292 GTAGTTTGGCATGACAGTCCGTTTCATCCCAACTTGAATGTTTATAGTAATGTTCTCTTAATTTT
1 --AGTTTGGCATGACAGTCCATTTCATCCCAA-TTTAAAGCTTATAGAAATGTCCTATTAATTTT
* * * * *
51415357 GCATTCAATC-AA-A-T----------TTTGGCAAGGAAGTTTGGCATGATAGTCCATTTCGTCC
63 GCATTCAATCAAATATTGGAAGGGAAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTCATCC
* * * ** * **
51415409 CAATTTGAATGCTTTTAGAAATATCCTCTTAAATTTACACTCAATCAAATTTTGGCAGGACAATT
128 CAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGTA-TTAATC-AATTTTGGCAGG-GTATT
* * * * * * *
51415474 TGGCT-GGTAGTTTTGCATGACAGTTCATTTCATCCCAATTTTAATTCTTTTA-ATAATGTCCTC
190 TCGCTAGGTAGTTTGGCATGACAGTCCATTTCGT-CCAATTTGAATGCTTATAGA-AATGTCCTC
* * *
51415537 TTAATTTTGCATTCAATCAATTTCAGTA-GAGCAGTTTTG-TCGGGTAGTTTGGCATGACAGTCC
253 TTAATTTTGCATTCAATCAATTT-AGCATGA-CAGTTTGGCT-GGGTAGTTTGGCATGATAGTCC
** * * * ** * * * * *
51415600 ATTTTGTACCGATTTAAATGTTTATAGAAATGTCTTCTTAATTTGGAATTCAATAAAATTTTGGA
315 ATTTCATCCCAATTTGAATGTTTATAGAAATACCTT-TTAATTTTGCATTCAATCAAATATTGGC
* * * * * *
51415665 AGGGTAGTTTGGC---------T---TGACAATCAATTTTGTCCCAATTTGAATGCTTATAGAAA
379 AGGGAAGTTTGGCTGGATATTTTGCATGACAGTCCATTTCGTCCCAGTTTGAATGTTTATAGAAA
* * * *** *
51415718 TGTCTTCTTAATTTTGAATTCAACCAAATATTGGCAAGGTAGTTTGGCTCCGT
444 TGTCATCTTAATTTTGCATTCAATCAAAT-TT--TTTGGTA-----GCT---A
* * * * * * *
51415771 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATATCCTTTTAATTATGT
1 AGTTTGGCATGACAGTCCATTTCATCCCAATTT-AAAGCTTATAGAAATGTCCTATTAATTTTGC
* * * * * *
51415836 ATTTAATCAAATATTGGCAGGGTAA-TT---T-GGTA---T-G-AT---AGTCCATTTCGTCCTA
65 ATTCAATCAAATATTGGAAGGGAAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTCATCCCA
* * * * * *
51415888 ATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTCAATTAGTTTTGGTAGGG-AGGTTTG
130 ATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGTATT-AATCAATTTTGGCAGGGTA--TTTC
* * * * * *** *
51415952 GTTGGGTAGTTTGACATGACAGTCCATTTCATTCTAATTTGAAAATTTATCA-AAATGTCCTTTT
192 GCTAGGTAGTTTGGCATGACAGTCCATTTC-GTCCAATTTGAATGCTTAT-AGAAATGTCCTCTT
* * * * *
51416016 AATTTTGAATT---T-AA--T--CA--A-ATTTTGGCTAGGTAGTTTGGCATGATTGTACATTTC
255 AATTTTGCATTCAATCAATTTAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATAGTCCATTTC
* * * * * * *
51416070 AT-CCATATTTGAACT-CTTATAGAAATGTA-ATATTAATTTTGCATTTAAACAAATTTTGGTAG
320 ATCCCA-ATTTGAA-TGTTTATAGAAA--TACCTTTTAATTTTGCATTCAATCAAATATTGGCAG
* ** * * * * * *
51416132 GGCAGTTTCACTTGATAGTTCTT-TATGATAGTCTATTTTGTCCCAATTTGAATGCTTT-TAGAA
381 GGAAGTTTGGCTGGATA-TT-TTGCATGACAGTCCATTTCGTCCCAGTTTGAATG-TTTATAGAA
* * *
51416195 ATGTCATCTTAATTTTGCGTTCAATC-AA--TTTTGGCAGGGT-
443 ATGTCATCTTAATTTTGCATTCAATCAAATTTTTTGGTA-GCTA
51416235 AGTTTGGCATGACAGTCCATTT
1 AGTTTGGCATGACAGTCCATTT
51416257 TGTCCAAATT
Statistics
Matches: 3472, Mismatches: 633, Indels: 580
0.74 0.14 0.12
Matches are distributed among these distances:
453 1 0.00
454 3 0.00
455 3 0.00
460 2 0.00
461 1 0.00
462 1 0.00
463 6 0.00
464 161 0.05
465 136 0.04
466 5 0.00
467 2 0.00
468 6 0.00
470 2 0.00
471 1 0.00
472 4 0.00
473 4 0.00
474 7 0.00
475 34 0.01
476 95 0.03
477 247 0.07
478 265 0.08
479 17 0.00
480 5 0.00
481 4 0.00
482 1 0.00
484 1 0.00
485 9 0.00
486 154 0.04
487 166 0.05
488 418 0.12
489 94 0.03
490 604 0.17
491 300 0.09
492 27 0.01
493 1 0.00
494 9 0.00
495 136 0.04
496 122 0.04
497 5 0.00
498 61 0.02
499 117 0.03
500 15 0.00
501 67 0.02
502 1 0.00
503 2 0.00
504 51 0.01
505 94 0.03
510 5 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (485 bp):
AGTTTGGCATGACAGTCCATTTCATCCCAATTTAAAGCTTATAGAAATGTCCTATTAATTTTGCA
TTCAATCAAATATTGGAAGGGAAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTCATCCCAA
TTTGAATGCTTATAGAAATGTCCTCTTAATTTTGTATTAATCAATTTTGGCAGGGTATTTCGCTA
GGTAGTTTGGCATGACAGTCCATTTCGTCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTT
GCATTCAATCAATTTAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCATCCCA
ATTTGAATGTTTATAGAAATACCTTTTAATTTTGCATTCAATCAAATATTGGCAGGGAAGTTTGG
CTGGATATTTTGCATGACAGTCCATTTCGTCCCAGTTTGAATGTTTATAGAAATGTCATCTTAAT
TTTGCATTCAATCAAATTTTTTGGTAGCTA
Found at i:51415128 original size:100 final size:98
Alignment explanation
Indices: 51414812--51416225 Score: 882
Period size: 100 Copynumber: 14.6 Consensus size: 98
51414802 GCATGGTATC
* * * * * *
51414812 CCATTTCATCCCAATTTGAATGCTTATAGACATGTCTTATTAATTTTGCATTTAATCAATATTGG
1 CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAT-TTAG
* * *
51414877 AAGGGAAGTGTT-TCTAGGTAGTTTGGCATGACAGT
65 CA-GGAAGT-TTGGCTGGGTAGTTTGGCATGACAGT
* * * * * *
51414912 CCGTTTAGTCCCAATTTGAATGCTTATAGAATTGTCCTCTGAATTTTGTATT-AATCAATTTTGC
1 CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTAGC
* *
51414976 AGGGTAGTTTGGCTGGGTAGGCTT-GCATGACAGT
66 A-GGAAGTTTGGCTGGGTA-GTTTGGCATGACAGT
*
51415010 CCATTTCGTACCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTGTAG
1 CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATT-TAG
* **
51415075 CATGACAGTTTGGCTGGGTAGTTTGGCATGATTGT
65 CAGGA-AGTTTGGCTGGGTAGTTTGGCATGACAGT
* * *
51415110 CCATTTCGTCCCATTTTGAATGCTTATAG-AATGTCCTTTTAATTTTGCATTCAATCAATTTTGG
1 CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA-TTTAG
* * * **
51415174 CAGGGTAGTTTGGTTGGATAGTTTTCCATGACAGT
65 CA-GGAAGTTTGGCTGGGTAGTTTGGCATGACAGT
** * * * * * *
51415209 CCACGTCGT-CTAAGTTAGAATGTTTATAGAAATATCATCTTAATTTTGAATTCAATCAAATTTT
1 CCATTTCGTCCCAA-TTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AA-TTT
* ** *
51415273 GGCAGGGCGGTTTGGCTGAGTAGTTTGGCATGACAGT
63 AGCA-GGAAGTTTGGCTGGGTAGTTTGGCATGACAGT
* * * * * *
51415310 CCGTTTCATCCCAACTTGAATGTTTATAGTAATGTTCTCTTAATTTTGCA-T---TCAA--T--C
1 CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTAGC
* ** * *
51415367 A--AATTTTGGCAAGGAAGTTTGGCATGATAGT
66 AGGAAGTTTGGCTGGGTAGTTTGGCATGACAGT
* * * * * *
51415398 CCATTTCGTCCCAATTTGAATGCTTTTAGAAATATCCTCTTAAATTTACACTCAATCAAATTTTG
1 CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AA-TTTA
* *
51415463 GCAGGACAATTTGGCT-GGTAGTTTTGCATGACAGT
64 GCAGGA-AGTTTGGCTGGGTAGTTTGGCATGACAGT
* * * * *
51415498 TCATTTCATCCCAATTTTAATTCTTTTA-ATAATGTCCTCTTAATTTTGCATTCAATCAATTTCA
1 CCATTTCGTCCCAATTTGAATGCTTATAGA-AATGTCCTCTTAATTTTGCATTCAATCAATTT-A
* * *
51415562 GTAGAGCAGTTTTG-TCGGGTAGTTTGGCATGACAGT
64 GCAG-GAAGTTTGGCT-GGGTAGTTTGGCATGACAGT
* * * * * * * *
51415598 CCATTTTGTACCGATTTAAATGTTTATAGAAATGTCTTCTTAA-TTTGGA---ATTCAA--TA--
1 CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTAGC
* ** * *
51415655 A--AATTTTGGAAGGGTAGTTTGGCTTGACAAT
66 AGGAAGTTTGGCTGGGTAGTTTGGCATGACAGT
* * * * * *
51415686 CAATTTTGTCCCAATTTGAATGCTTATAGAAATGTCTTCTTAATTTTGAATTCAACCAAATATTG
1 CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AAT-TTA
* **
51415751 GCAAGGTAGTTTGGCTCCGTAGTTTGGCATGACAGT
64 GC-AGGAAGTTTGGCTGGGTAGTTTGGCATGACAGT
* * * * *
51415787 CCATTTCGTCCCAATTTGAATGTTTATAGAAATATCCTTTTAATTATGTATT---T-AA--T--C
1 CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTAGC
* * * *
51415844 A--AA-TATTGGCAGGGTAATTTGGTATGATAGT
66 AGGAAGT-TTGGCTGGGTAGTTTGGCATGACAGT
* * * * *
51415875 CCATTTCGTCCTAATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTCAATTAGTTTTGG
1 CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCA-ATTTAG
* * * *
51415940 TAGGGAGGTTTGGTTGGGTAGTTTGACATGACAGT
65 CA-GGAAGTTTGGCTGGGTAGTTTGGCATGACAGT
* * * *** * *
51415975 CCATTTCATTCTAATTTGAAAATTTATCA-AAATGTCCTTTTAATTTTGAATT---T-AA--T--
1 CCATTTCGTCCCAATTTGAATGCTTAT-AGAAATGTCCTCTTAATTTTGCATTCAATCAATTTAG
* * **
51416031 CA--AATTTTGGCTAGGTAGTTTGGCATGATTGT
65 CAGGAAGTTTGGCTGGGTAGTTTGGCATGACAGT
* * ** * * *
51416063 ACATTTCAT-CCATATTTGAACT-CTTATAGAAATGTAATATTAATTTTGCATTTAAACAAATTT
1 CCATTTCGTCCCA-ATTTGAA-TGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AA-TT
* * * ** * * ** *
51416126 TGGTAGGGCAGTTTCACTTGATAGTTCT-TTATGATAGT
62 TAGCA-GGAAGTTTGGCTGGGTAGTT-TGGCATGACAGT
* * * * *
51416164 CTATTTTGTCCCAATTTGAATGCTTTTAGAAATGTCATCTTAATTTTGCGTTCAATCAATTT
1 CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTT
51416226 TGGCAGGGTA
Statistics
Matches: 1017, Mismatches: 218, Indels: 159
0.73 0.16 0.11
Matches are distributed among these distances:
87 4 0.00
88 250 0.25
89 6 0.01
90 1 0.00
91 6 0.01
92 5 0.00
93 10 0.01
94 1 0.00
95 1 0.00
96 13 0.01
97 6 0.01
98 81 0.08
99 117 0.12
100 303 0.30
101 206 0.20
102 7 0.01
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (98 bp):
CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTAGC
AGGAAGTTTGGCTGGGTAGTTTGGCATGACAGT
Found at i:51415438 original size:88 final size:88
Alignment explanation
Indices: 51415294--51415465 Score: 238
Period size: 88 Copynumber: 2.0 Consensus size: 88
51415284 TTGGCTGAGT
* * * * * *
51415294 AGTTTGGCATGACAGTCCGTTTCATCCCAACTTGAATGTTTATAGTAATGTTCTCTTAATTTTGC
1 AGTTTGGCATGACAGTCCATTTCATCCCAACTTGAATGTTTATAGAAATATCCTCTTAAATTTAC
*
51415359 ATTCAATCAAATTTTGGCAAGGA
66 ACTCAATCAAATTTTGGCAAGGA
* * *
51415382 AGTTTGGCATGATAGTCCATTTCGTCCCAATTTGAATGCTTT-TAGAAATATCCTCTTAAATTTA
1 AGTTTGGCATGACAGTCCATTTCATCCCAACTTGAATG-TTTATAGAAATATCCTCTTAAATTTA
51415446 CACTCAATCAAATTTTGGCA
65 CACTCAATCAAATTTTGGCA
51415466 GGACAATTTG
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
88 70 0.96
89 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (88 bp):
AGTTTGGCATGACAGTCCATTTCATCCCAACTTGAATGTTTATAGAAATATCCTCTTAAATTTAC
ACTCAATCAAATTTTGGCAAGGA
Found at i:51415766 original size:88 final size:88
Alignment explanation
Indices: 51415578--51415766 Score: 263
Period size: 88 Copynumber: 2.1 Consensus size: 88
51415568 CAGTTTTGTC
* * * * *
51415578 GGGTAGTTTGGCATGACAGTCCATTTTGTACCGATTTAAATGTTTATAGAAATGTCTTCTTAATT
1 GGGTAGTTTGGCTTGACAATCAATTTTGTACCAATTTAAATGCTTATAGAAATGTCTTCTTAATT
* *
51415643 TGGAATTCAATAAAATTTTGGAA
66 TGGAATTCAACAAAATATTGGAA
* *
51415666 GGGTAGTTTGGCTTGACAATCAATTTTGTCCCAATTTGAATGCTTATAGAAATGTCTTCTTAATT
1 GGGTAGTTTGGCTTGACAATCAATTTTGTACCAATTTAAATGCTTATAGAAATGTCTTCTTAATT
* *
51415731 TTGAATTCAACCAAATATTGGCAA
66 TGGAATTCAACAAAATATTGG-AA
51415755 -GGTAGTTTGGCT
1 GGGTAGTTTGGCT
51415767 CCGTAGTTTG
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
88 87 0.98
89 2 0.02
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (88 bp):
GGGTAGTTTGGCTTGACAATCAATTTTGTACCAATTTAAATGCTTATAGAAATGTCTTCTTAATT
TGGAATTCAACAAAATATTGGAA
Found at i:51415811 original size:189 final size:184
Alignment explanation
Indices: 51415479--51416276 Score: 639
Period size: 188 Copynumber: 4.2 Consensus size: 184
51415469 CAATTTGGCT
* * * * *
51415479 GGTAGTTTTGCATGACAGTTC-ATTTCATCCCAATTTTAATTCTTTTA-ATAATGTCCTCTTAAT
1 GGTAGTTTGGCATGACAG-TCAATTTCGTCCCAATTTGAA-TCTTATAGA-AATGT-TTCTTAAT
** * * *
51415542 TTTGCATTCAATC-AATTTCAGTAGAGCAGTTTTG-TCGGGTAGTTTGGCATGACAGTCCATTTT
62 TTTGCATTCAA-CAAATTTTGGAAG-GCAGTTTGGCTC--GTAGTTTGGCATGACAGTCCATTTC
* * * * * *
51415605 GTACCGATTTAAATGTTTATAGAAATGT-CTTCTTAATTTGGAATTCAATAAAATTTTGGAAG
123 GTCCCAATTTGAATGTTTATAGAAATGTCCTT-TTAATTTTGAATTCAATCAAATTTTGGCAG
* * *
51415667 GGTAGTTTGGCTTGACAATCAATTTTGTCCCAATTTGAATGCTTATAGAAATGTCTTCTTAATTT
1 GGTAGTTTGGCATGACAGTCAATTTCGTCCCAATTTGAAT-CTTATAGAAATGT-TTCTTAATTT
* * *
51415732 TGAATTCAACCAAATATTGGCAAGGTAGTTTGGCTCCGTAGTTTGGCATGACAGTCCATTTCGTC
64 TGCATTCAA-CAAATTTTGG-AAGGCAGTTTGGCT-CGTAGTTTGGCATGACAGTCCATTTCGTC
* * * * *
51415797 CCAATTTGAATGTTTATAGAAATATCCTTTTAATTATGTATTTAATCAAATATTGGCAG
126 CCAATTTGAATGTTTATAGAAATGTCCTTTTAATTTTGAATTCAATCAAATTTTGGCAG
* * * * *
51415856 GGTAATTTGGTATGATAGTCCATTTCGTCCTAATTTGAATGCTTATAGAAATGTTCTCTTAATTT
1 GGTAGTTTGGCATGACAGTCAATTTCGTCCCAATTTGAAT-CTTATAGAAATGTT-TCTTAATTT
** * * * * * * * *
51415921 TGCATTCAATTAGTTTTGGTAGGGAGGTTTGGTTGGGTAGTTTGACATGACAGTCCATTTCATTC
64 TGCATTCAACAAATTTTGGAAGGCA-GTTTGGCT-CGTAGTTTGGCATGACAGTCCATTTCGTCC
* ** *
51415986 TAATTTGAAAATTTATCA-AAATGTCCTTTTAATTTTGAATTTAATCAAATTTTGGCTA-
127 CAATTTGAATGTTTAT-AGAAATGTCCTTTTAATTTTGAATTCAATCAAATTTTGGC-AG
** * * *
51416044 GGTAGTTTGGCATGATTGT-ACATTTCAT-CCATATTTGAACTCTTATAGAAATGTAATATTAAT
1 GGTAGTTTGGCATGACAGTCA-ATTTCGTCCCA-ATTTGAA-TCTTATAGAAATGT-TTCTTAAT
* * ** * ** * * *
51416107 TTTGCATTTAAACAAATTTTGGTAGGGCAGTTTCACTTGATAGTTCT-TTATGATAGTCTATTTT
62 TTTGCA-TTCAACAAATTTTGG-AAGGCAGTTTGGCTCG-TAGTT-TGGCATGACAGTCCATTTC
* * **
51416171 GTCCCAATTTGAATGCTTT-TAGAAATGTCATCTTAATTTTGCGTTCAATC-AATTTTGGCAG
123 GTCCCAATTTGAATG-TTTATAGAAATGTCCTTTTAATTTTGAATTCAATCAAATTTTGGCAG
* * *
51416232 GGTAGTTTGGCATGACAGTCCATTTTGTCCAAATTTGAATCTTAT
1 GGTAGTTTGGCATGACAGTCAATTTCGTCCCAATTTGAATCTTAT
51416277 GTAACATCCC
Statistics
Matches: 489, Mismatches: 96, Indels: 51
0.77 0.15 0.08
Matches are distributed among these distances:
187 16 0.03
188 240 0.49
189 219 0.45
190 13 0.03
191 1 0.00
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.42
Consensus pattern (184 bp):
GGTAGTTTGGCATGACAGTCAATTTCGTCCCAATTTGAATCTTATAGAAATGTTTCTTAATTTTG
CATTCAACAAATTTTGGAAGGCAGTTTGGCTCGTAGTTTGGCATGACAGTCCATTTCGTCCCAAT
TTGAATGTTTATAGAAATGTCCTTTTAATTTTGAATTCAATCAAATTTTGGCAG
Found at i:51420226 original size:100 final size:100
Alignment explanation
Indices: 51420048--51420737 Score: 400
Period size: 100 Copynumber: 7.1 Consensus size: 100
51420038 AAATAAATTA
* * * *
51420048 TTAATTTTGCATTCAATCAAATATTGGCACTACT-GTTTGGTTTGGAAGTTTGGCATGACAGTCC
1 TTAATTTTGCATTCAATCAAAT-TTGGCA-GAGTAGTTTGGTTGGGAAGTTTGGAATGACAGTCC
* * *
51420112 ATTTCG-ATCGAATTTGATTGCTTAAAG-AATGTCCTC
64 ATTTCGTA-CCAATTTGAATGCTTATAGAAATGTCCTC
*
51420148 TTAATTTTGCATTCAATCAAATGTTGGCAGAGTAGTTTGGTTGGGTAGTTTGGAATGACAGTCCA
1 TTAATTTTGCATTCAATCAAAT-TTGGCAGAGTAGTTTGGTTGGGAAGTTTGGAATGACAGTCCA
*
51420213 TTTTGTACCAATTTGAATGCTTATAGAAATGTCCTC
65 TTTCGTACCAATTTGAATGCTTATAGAAATGTCCTC
* * * * *
51420249 TTAATTTTGCATTCAATC-AATTTAGGAAGGGAAGTTTGGCT-GGACAGTTT-GACTTGACAGTC
1 TTAATTTTGCATTCAATCAAATTT-GGCAGAGTAGTTTGGTTGGGA-AGTTTGGA-ATGACAGTC
* * * * *
51420311 CA-TTCGTTCCAATTTGAATGTTTATCGAAATGTCTTT
63 CATTTCGTACCAATTTGAATGCTTATAGAAATGTCCTC
* * * * * *
51420348 TTAATTTTGCATTTAATAAAATTTTGGCAGGGTA-TTT--TT--GCA---TGG-CT---A-TCCT
1 TTAATTTTGCATTCAATCAAA-TTTGGCAGAGTAGTTTGGTTGGGAAGTTTGGAATGACAGTCCA
* * * *
51420400 TTTCGTCCCAATTTGAATGTTTTTTGAAATGTCCTC
65 TTTCGTACCAATTTGAATGCTTATAGAAATGTCCTC
*
51420436 TTAATTTTGCATTCAATCAAATTTTGGC----T-G---GG-T----AGTTT-GACATTACAGTCC
1 TTAATTTTGCATTCAATCAAA-TTTGGCAGAGTAGTTTGGTTGGGAAGTTTGGA-ATGACAGTCC
* * * * *
51420487 ATTTCATCCCAATTTAAATACTTTTAGAAATGTCCT-
64 ATTTCGTACCAATTTGAATGCTTATAGAAATGTCCTC
** * * * * * * *
51420523 TTGAATTTTGTGTTTAATCAATTTTGGCAGGGTAGTTTGGCTAGGAAGTTTTGTATGACAGTCCA
1 TT-AATTTTGCATTCAATCAAATTTGGCAGAGTAGTTTGGTTGGGAAGTTTGGAATGACAGTCCA
* * *
51420588 TTTTGT-CCTAATTGGAATGCTTATAGAAATGTCATC
65 TTTCGTACC-AATTTGAATGCTTATAGAAATGTCCTC
* * * * * * * * *
51420624 TTAGTTTTGCATTCAATTAATTTTAGC-GTGATAGTTTGGCTAGGTAGTTT-GACATGACCA-TT
1 TTAATTTTGCATTCAATCAAATTTGGCAGAG-TAGTTTGGTTGGGAAGTTTGGA-ATGA-CAGTC
* * *
51420686 CATTTCAT-CCTAATTTGAATGCTTAAAGAAATGGT-CTT
63 CATTTCGTACC-AATTTGAATGCTTATAGAAAT-GTCCTC
*
51420724 TTAATTTTGTATTC
1 TTAATTTTGCATTC
51420738 TCCATTTCAT
Statistics
Matches: 472, Mismatches: 75, Indels: 86
0.75 0.12 0.14
Matches are distributed among these distances:
80 1 0.00
82 2 0.00
83 1 0.00
84 2 0.00
87 12 0.03
88 105 0.22
91 2 0.00
92 2 0.00
93 1 0.00
95 3 0.01
96 2 0.00
97 1 0.00
99 61 0.13
100 239 0.51
101 38 0.08
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.42
Consensus pattern (100 bp):
TTAATTTTGCATTCAATCAAATTTGGCAGAGTAGTTTGGTTGGGAAGTTTGGAATGACAGTCCAT
TTCGTACCAATTTGAATGCTTATAGAAATGTCCTC
Found at i:51420462 original size:88 final size:87
Alignment explanation
Indices: 51420294--51420561 Score: 292
Period size: 88 Copynumber: 3.1 Consensus size: 87
51420284 TTGGCTGGAC
* * * * *
51420294 AGTTTGACTTGACAGTCCA-TTCGTTCCAATTTGAATGTTTATCGAAATGTCTTTTTAATTTTGC
1 AGTTTGACATGACAGTCCATTTCGTCCCAATTTGAATGTTTTTAGAAATGTC-CTTTAATTTTGC
*
51420358 ATTTAATAAAATTTTGGCAGGGT
65 ATTTAATCAAATTTTGGCAGGGT
* * * *
51420381 ATTTTTG-CATGGCTA-TCCTTTTCGTCCCAATTTGAATGTTTTTTGAAATGTCCTCTTAATTTT
1 A-GTTTGACATGAC-AGTCCATTTCGTCCCAATTTGAATGTTTTTAGAAATGTCCT-TTAATTTT
* *
51420444 GCATTCAATCAAATTTTGGCTGGGT
63 GCATTTAATCAAATTTTGGCAGGGT
* * * ** *
51420469 AGTTTGACATTACAGTCCATTTCATCCCAATTTAAATACTTTTAGAAATGTCCTTTGAATTTTGT
1 AGTTTGACATGACAGTCCATTTCGTCCCAATTTGAATGTTTTTAGAAATGTCCTTT-AATTTTGC
*
51420534 GTTTAATC-AATTTTGGCAGGGT
65 ATTTAATCAAATTTTGGCAGGGT
51420556 AGTTTG
1 AGTTTG
51420562 GCTAGGAAGT
Statistics
Matches: 150, Mismatches: 24, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
87 35 0.23
88 115 0.77
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.44
Consensus pattern (87 bp):
AGTTTGACATGACAGTCCATTTCGTCCCAATTTGAATGTTTTTAGAAATGTCCTTTAATTTTGCA
TTTAATCAAATTTTGGCAGGGT
Found at i:51420745 original size:54 final size:54
Alignment explanation
Indices: 51420686--51420791 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
51420676 CATGACCATT
51420686 CATTTCATC-CTAATTTGAATGCTTAAAGAAATGGTCTT-TTAATTTTGTATTCTC
1 CATTTCATCTC-AATTTGAATGCTTAAAGAAAT-GTCTTATTAATTTTGTATTCTC
* * **
51420740 CATTTCATCTCAATTTTAATGTTTATTGAAATGTCTTATTAATTTTGTATTC
1 CATTTCATCTCAATTTGAATGCTTAAAGAAATGTCTTATTAATTTTGTATTC
51420792 AATCAAATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
53 5 0.11
54 40 0.87
55 1 0.02
ACGTcount: A:0.27, C:0.13, G:0.09, T:0.50
Consensus pattern (54 bp):
CATTTCATCTCAATTTGAATGCTTAAAGAAATGTCTTATTAATTTTGTATTCTC
Found at i:51420915 original size:101 final size:101
Alignment explanation
Indices: 51420738--51423973 Score: 2803
Period size: 101 Copynumber: 32.7 Consensus size: 101
51420728 TTTTGTATTC
* * * * * * * *
51420738 TCCATTTCATCTCAATTTTAATGTTTATTGAAATGTCTTATTAATTTTGTATTCAATCAAATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * * *
51420803 AGCAAGGCAGTTTGGCTAGGTAGTTTGGCATGATAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * *
51420839 TACATTTCGTCCCAATTTGAGTG-TCTATTGAACTGTCCTCTTAATTTTGCATTCAATCAAATTC
1 TCCATTTCGTCCCAATTTGAATGCT-TATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * * * *
51420903 TGGCAGGGCAGTTTGG-TAAGGTAGTTTTGCAAGACAA
65 TGGCAGGGAAGTTTGGCT-GGGTAGTTTGGCATGATAG
* * *
51420940 TCCATTTTGTCCCAATCTGAATGCTTATAGAAATGTCTTCTTAATTTTGCATTCAATCAAATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * * *
51421005 GGTAGGGCAGTTTGGCTAGATAGTTTGGCATGATAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * *
51421041 TCCATTTCGTCCCAATTTTAATGCTTACAAAAATGTCCTCTTAATTTTGCATTCAATC-TATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * *
51421105 TGCAGGGTAGTTTGGCTGGGTAGTTTAGCAATG-TAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGC-ATGATAG
* * * *
51421141 TCCATTTCTTCCCAATTTTAATGCTTATAAAAATGTGCTCTTAATTTTGCATTCAAT--AATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* **** * * * * *
51421204 AGCATACCAGTTTTGTTGAGTAGTTTGACATGACAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * * *
51421240 TCGATTTCGTACCAATTTGAATGTTTATAGAAATGTCATTTTAATTATGCATTCAATCAAATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* *
51421305 GGTA-GG-A------C-----AGTTTGGCATGACAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* ** * ** * *
51421328 TCAATTTTATCTCAATTTGAATGCTTATAGTTATGTCCTCTTAATTTTGCATTCAGTCAAATATT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * * * * * *
51421393 GGCAGGGTAGTTTAGCTTGGAACTTTGGCATGACAA
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * ** * * * * * *
51421429 TCTATTTCATCTGAATTTGATTGCTTAAAGAAATATCCTCTTAATTTTACATTAAATCAAATATT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
*
51421494 GGCAGGGCAA-TTTGGCTGGGTAGTTTGACATGACT-G
66 GGCAGGG-AAGTTTGGCTGGGTAGTTTGGCATGA-TAG
*** * * * *
51421530 TCCATTTCGAATCAAATTGAATGCCTATAGAAATGTCCTCTTGATTTTGCATTCAAT-TAATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* ** *
51421594 GGAAATGAAGTTTGGCTGGATAGTTTGGCATGATAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * * *
51421630 TCCATTTCGTTCCAATTTGAATGTTTATATAAATGTCATCTTAATTTTGTATTAAATCAAATTTC
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT-
* * * * *
51421695 T-ACATGGAAATTTAGCTGGGTATTTTGGCATGACT-G
65 TGGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGA-TAG
* * * * * * *
51421731 TCCATTTTGTCCCAATTTTAATGTTTATCGAAATGTCCACTTAATTTTGCATTCAGTTAAATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
*
51421796 --------AG--T---TGGGTAGTTTGTCATGATA-
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * * * * *
51421818 ACCATTTAGTTCCAATCTGAATGCTTTTAGAAATGTCCTCTGAATTTTGCGTTCGATC-AATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * * **
51421882 GCCAAGGTAGTTTGGCTGGGTAGTTTTTCATGATAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* ** * *
51421918 TCCATTTTC-TCCCAATTGGAATGCTTATAGAAATGTTGTCTTCATTTTGCATTCAAT-TAATTT
1 TCCA-TTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * * * *
51421981 TAGCA-TGATAGTTTAGCTGGATAGTTTGACATGATCG
65 TGGCAGGGA-AGTTTGGCTGGGTAGTTTGGCATGATAG
* *
51422018 TCCATTTCGTCCCAATTTGAATGCTTAAAGAAATGACCTCTTAATTTTGCATTCAATC-AATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* ** * * ** *
51422082 GGCCA-GGTAGTTTCACTGGATAATTTTCCATGACAG
66 GG-CAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * *
51422118 TCCATTTCGTCCCAATTTGAATGTTTACAGAAATGTCCTCTTAATTTTGCATTTAATCAAATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * * * * *
51422183 GGCAAGGCAGTTTGGTTGGATAGTTTGGCGTGACAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * * * *
51422219 TCTATTTCATTCCAATTTTAATGCTTATAAAAATGTCCTCTTAATTTTACGTTCAATC-AATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * *
51422283 GGCAGAGCAGTTTGGCTGGGTAGTTTGGTATGATAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * ** * * *
51422319 TTCATTTCATATCAATTTAAATGTTTATAGAAATGTCCTCTTAATTTTGCGTTCAATCAAATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * *
51422384 GGTAGGGTAGTTTGGC------G--TGACA--AT--
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
** * * *
51422408 T-CATTTTATCCCATTTTGAATGCTTATAGAAATGTCCTCTTAATTTTGTATTCAATCAAATATT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
** * * * * *
51422472 GGCAGGTTAGTTTGGCTTGGTAGTTTGACATTACAA
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * *
51422508 TCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTACTTGTGCATTCAATCAAAATAT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AAATTT
* * * * *
51422573 TGACAGGGTAGTTTGGCTGTGTAGTTTGGCCTTATAG
65 TGGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * *
51422610 TTCATTTCATCCCAATTTGAATGCTTATAGAAACGTTCTCTTAATTTTGCAGTCAATC-AATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * *
51422674 GGCAGGTAAGTTTGGCTGGATAGTTTGACATGATAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * *
51422710 TTCATTTCGTCCCAATTTGAAAGTTTA-ATGAAATGTCCT-TTCAATTTTGCATTCAATCAAATT
1 TCCATTTCGTCCCAATTTGAATGCTTATA-GAAATGTCCTCTT-AATTTTGCATTCAATCAAATT
** * * * * * * * *
51422773 TTGGTTGGGAAATCTGGCAT-GGAAATCTGGCATCACAT
64 TTGGCAGGGAAGTTTGGC-TGGGTAGTTTGGCATGATAG
* *
51422811 TCCATTTTTGTCCCAATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTCAATC-AATTT
1 TCCA-TTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
*
51422875 TGGCAGGGAGGTTTGGCTGGGTAGTTTGGCATGATAG
65 TGGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * *
51422912 TCCATTTCGTCCCAATTTGAAAGTTTATAGAAATGTCCTTTTCAATTTTGCATTCAATCAAATTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTT-AATTTTGCATTCAATCAAATTT
* * * *
51422977 TGGCTGGGAAATTTGGTTAGGTAGTTTGGCATGATAG
65 TGGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * ** *
51423014 TCTATTTCGTCCAAATTTGAACT-CTTATAGAAATGTAATCTTAATTTTGCATTTAATCAAATTT
1 TCCATTTCGTCCCAATTTGAA-TGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * * *
51423078 TAGTAGGGCAGTTTCGCTTGGTAGTTCT-GCATGATAG
65 TGGCAGGGAAGTTTGGCTGGGTAGTT-TGGCATGATAG
* * * * *
51423115 TCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTTTTAATTTTGCGTTCGATC-AATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * *
51423179 TGCAGGGAAGTTTGGCTGGGTAGTTTGTCATGACAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * *
51423215 TCCATTCCGTCCAAATTTGAATGCTTAAAGAAAT-TCCTTCTTAATTTTGTATTCAATC-AATTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCC-TCTTAATTTTGCATTCAATCAAATTT
** * * *
51423278 TTTCAGGGAAGTTTGGTTGGGTAGTTTGACATTATAG
65 TGGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * ** * * *
51423315 TCCATTGCTTCAAAATTTGAATGTTTGTCGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * * **
51423380 GGCAGGGAAATTTTGTTGGGTAGTTTGGCATGGCAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * *
51423416 TTCATTTCGTACTAATTTGAACGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * * *
51423481 GCCTGGGAAATTTGGCTGGGTAGTTTTGCATGATAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * *
51423517 TCCATTTCAT-CCATATTTGAACT-CTTATAGAAATGTCATTTTAATTCTGCATTCAATCAAATT
1 TCCATTTCGTCCCA-ATTTGAA-TGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATT
* *
51423580 TTGGTA-GG-A------C-----AGTTTGGCTTGATAG
64 TTGGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
*** *
51423605 TCCATTTCGTATAAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTTCATTCAATC-AATTTT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
* * * *
51423669 GGAAGGAAAATTTGGCTGGGTAGTTTGGCATGACAG
66 GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
** * *
51423705 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTATTCTTAATCTTT-CTTTCAATCAAATAT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAAT-TTTGCATTCAATCAAATTT
* ** * *
51423769 TGGTAGGGCTGTTTGGC-AGGTAGTTTGGCATGACAG
65 TGGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * *
51423805 TCTATTTTGTCCCAATTTGAATGCTTATAGAAATGACTTCTTAATTTTGCATTTAATCAAATATT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAAT-TT
** * * * *
51423870 T-GCAGGGTTGTTTAGCTGGATAGTTTGTCATGACAG
65 TGGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * * *
51423906 TCTATTTCGTCCCAATTTAAATGCTTATAAAAATGTCTTTTTAATTTTGCATTCAATCAAATATT
1 TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
51423971 GGC
66 GGC
51423974 TATAGACACC
Statistics
Matches: 2547, Mismatches: 482, Indels: 212
0.79 0.15 0.07
Matches are distributed among these distances:
86 6 0.00
87 55 0.02
88 213 0.08
89 5 0.00
90 1 0.00
91 3 0.00
93 5 0.00
94 3 0.00
95 2 0.00
96 7 0.00
98 4 0.00
99 111 0.04
100 878 0.34
101 1043 0.41
102 208 0.08
103 3 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.41
Consensus pattern (101 bp):
TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
GGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGATAG
Found at i:51421327 original size:88 final size:88
Alignment explanation
Indices: 51421225--51421394 Score: 218
Period size: 88 Copynumber: 1.9 Consensus size: 88
51421215 TTTGTTGAGT
* * *
51421225 AGTTTGACATGACAGTCGATTTCGTA-C-CAATTTGAATGTTTATAGAAATGTCATTTTAATTAT
1 AGTTTGACATGACAGTCAATTT--TATCTCAATTTGAATGCTTATAGAAATGTCATCTTAATTAT
*
51421288 GCATTCAATCAAATTTTGGTAGGAC
64 GCATTCAATCAAATATTGGTAGGAC
* ** * *
51421313 AGTTTGGCATGACAGTCAATTTTATCTCAATTTGAATGCTTATAGTTATGTCCTCTTAATTTTGC
1 AGTTTGACATGACAGTCAATTTTATCTCAATTTGAATGCTTATAGAAATGTCATCTTAATTATGC
*
51421378 ATTCAGTCAAATATTGG
66 ATTCAATCAAATATTGG
51421395 CAGGGTAGTT
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
86 2 0.03
87 1 0.01
88 67 0.96
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (88 bp):
AGTTTGACATGACAGTCAATTTTATCTCAATTTGAATGCTTATAGAAATGTCATCTTAATTATGC
ATTCAATCAAATATTGGTAGGAC
Found at i:51421690 original size:201 final size:200
Alignment explanation
Indices: 51421313--51423973 Score: 2291
Period size: 201 Copynumber: 13.4 Consensus size: 200
51421303 TTGGTAGGAC
* * * ** * * **
51421313 AGTTTGGCATGACAGTCAATTTTATCTCAATTTGAATGCTTATAGTTATGTCCTCTTAATTTTGC
1 AGTTTGACATGATAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * * * * * * *
51421378 ATTCAGTCAAATATTGGCAGGGTAGTTTAGCTTGGAACTTTGGCATGACAATCTATTTC-ATCTG
66 ATTCAATCAAATTTTGGCAGGGAAGTTTGGC-TGGTAGTTTGGCATGACAGTCCATTTCGTTC-C
* * * * * * * *
51421442 AATTTGATTGCTTAAAGAAATATCCTCTTAATTTTACATTAAATCAAATATTGGCAGGGCAATTT
129 AATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATTTTGGCAGGGTAGTTT
51421507 GGCTGGGT
193 GGCTGGGT
*** * ** *
51421515 AGTTTGACATGACT-GTCCATTTCGAATCAAATTGAATGCCTATAGAAATGTCCTCTTGATTTTG
1 AGTTTGACATGA-TAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTG
* * ** *
51421579 CATTCAAT-TAATTTTGGAAATGAAGTTTGGCTGGATAGTTTGGCATGATAGTCCATTTCGTTCC
65 CATTCAATCAAATTTTGGCAGGGAAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTTCC
* * * * * * * * *
51421643 AATTTGAATGTTTATATAAATGTCATCTTAATTTTGTATTAAATCAAATTTCT-ACATGGAAATT
129 AATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATTT-TGGCAGGGTAGTT
*
51421707 TAGCTGGGT
192 TGGCTGGGT
* * * * * *
51421716 ATTTTGGCATGACT-GTCCATTTTGTCCCAATTTTAATGTTTATCGAAATGTCCACTTAATTTTG
1 AGTTTGACATGA-TAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTG
* * * * * *
51421780 CATTCAGTTAAATTTT--------AG-TT-G--GGTAGTTTGTCATGATA-ACCATTTAGTTCCA
65 CATTCAATCAAATTTTGGCAGGGAAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTTCCA
* * * * * * *
51421832 ATCTGAATGCTTTTAGAAATGTCCTCTGAATTTTGCGTTCGATCAATTTTGCCAAGGTAGTTTGG
130 ATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGTTTGG
51421897 CTGGGT
195 CTGGGT
** * * ** *
51421903 AGTTTTTCATGATAGTCCATTTTC-TCCCAATTGGAATGCTTATAGAAATGTTGTCTTCATTTTG
1 AGTTTGACATGATAGTCCA-TTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTG
* * * * * *
51421967 CATTCAAT-TAATTTTAGCA-TGATAGTTTAGCTGGATAGTTTGACATGATC-GTCCATTTCGTC
65 CATTCAATCAAATTTTGGCAGGGA-AGTTTGGCTGG-TAGTTTGGCATGA-CAGTCCATTTCGTT
* *
51422029 CCAATTTGAATGCTTAAAGAAATGACCTCTTAATTTTGCATTCAATCAATTTTGGCCA-GGTAGT
127 CCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGG-CAGGGTAGT
** *
51422093 TTCACTGGAT
191 TTGGCTGGGT
* ** * *
51422103 AATTTTCCATGACAGTCCATTTCGTCCCAATTTGAATGTTTACAGAAATGTCCTCTTAATTTTGC
1 AGTTTGACATGATAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * * * *
51422168 ATTTAATCAAATTTTGGCAAGGCAGTTTGGTTGGATAGTTTGGCGTGACAGTCTATTTCATTCCA
66 ATTCAATCAAATTTTGGCAGGGAAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTTCCA
* * * * * *
51422233 ATTTTAATGCTTATAAAAATGTCCTCTTAATTTTACGTTCAATCAATTTTGGCAGAGCAGTTTGG
130 ATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGTTTGG
51422298 CTGGGT
195 CTGGGT
** * * ** *
51422304 AGTTTGGTATGATAGTTCATTTCATATCAATTTAAATGTTTATAGAAATGTCCTCTTAATTTTGC
1 AGTTTGACATGATAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * * ** * *
51422369 GTTCAATCAAATTTT------G--G--TAG--GGTAGTTTGGCGTGACAATTCATTTTATCCCAT
66 ATTCAATCAAATTTTGGCAGGGAAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTTCCAA
* * *
51422422 TTTGAATGCTTATAGAAATGTCCTCTTAATTTTGTATTCAATCAAATATTGGCAGGTTAGTTTGG
131 TTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATTTTGGCAGGGTAGTTTGG
*
51422487 CTTGGT
195 CTGGGT
* * * * *
51422493 AGTTTGACATTACAATCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTACTTGTGC
1 AGTTTGACATGATAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * * * * * *
51422558 ATTCAATCAAAATATTGACAGGGTAGTTTGGCTGTGTAGTTTGGCCTTATAGTTCATTTCATCCC
66 ATTCAATC-AAATTTTGGCAGGGAAGTTTGGCTG-GTAGTTTGGCATGACAGTCCATTTCGTTCC
* * *
51422623 AATTTGAATGCTTATAGAAACGTTCTCTTAATTTTGCAGTCAATCAATTTTGGCA-GGTAAGTTT
129 AATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCAGGGT-AGTTT
*
51422687 GGCTGGAT
193 GGCTGGGT
* *
51422695 AGTTTGACATGATAGTTCATTTCGTCCCAATTTGAAAGTTTA-ATGAAATGTCCT-TTCAATTTT
1 AGTTTGACATGATAGTCCATTTCGTCCCAATTTGAATGTTTATA-GAAATGTCCTCTT-AATTTT
** * * * * * * * * *
51422758 GCATTCAATCAAATTTTGGTTGGGAAATCTGGCATGGAAATCTGGCATCACATTCCATTTTTGTC
64 GCATTCAATCAAATTTTGGCAGGGAAGTTTGGC-TGGTAGTTTGGCATGACAGTCCA-TTTCGTT
*
51422823 CCAATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTCAATCAATTTTGGCAGGG-AGGT
127 CCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCAGGGTA-GT
51422887 TTGGCTGGGT
191 TTGGCTGGGT
* * *
51422897 AGTTTGGCATGATAGTCCATTTCGTCCCAATTTGAAAGTTTATAGAAATGTCCTTTTCAATTTTG
1 AGTTTGACATGATAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTT-AATTTTG
* * * * *
51422962 CATTCAATCAAATTTTGGCTGGGAAATTTGGTTAGGTAGTTTGGCATGATAGTCTATTTCG-TCC
65 CATTCAATCAAATTTTGGCAGGGAAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTTCC
** * * * *
51423026 AAATTTGAACT-CTTATAGAAATGTAATCTTAATTTTGCATTTAATCAAATTTTAGTAGGGCAGT
129 -AATTTGAA-TGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATTTTGGCAGGGTAGT
* *
51423090 TTCGCTTGGT
191 TTGGCTGGGT
* *
51423100 AGTTCTG-CATGATAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTTTTAATTTTG
1 AGTT-TGACATGATAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTG
* * * * *
51423164 CGTTCGATC-AATTTTTGCAGGGAAGTTTGGCTGGGTAGTTTGTCATGACAGTCCATTCCG-TCC
65 CATTCAATCAAATTTTGGCAGGGAAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTTCC
* * ** *
51423227 AAATTTGAATGCTTAAAGAAAT-TCCTTCTTAATTTTGTATTCAATCAATTTTTTCAGGGAAGTT
129 -AATTTGAATGCTTATAGAAATGTCC-TCTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGTT
*
51423291 TGGTTGGGT
192 TGGCTGGGT
* * * ** * *
51423300 AGTTTGACATTATAGTCCATTGCTTCAAAATTTGAATGTTTGTCGAAATGTCCTCTTAATTTTGC
1 AGTTTGACATGATAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * * * *
51423365 ATTCAATCAAATTTTGGCAGGGAAATTTTGTTGGGTAGTTTGGCATGGCAGTTCATTTCGTACTA
66 ATTCAATCAAATTTTGGCAGGGAAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTTCCA
* * * * *
51423430 ATTTGAACGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGCCTGGGAAATTTG
130 ATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATTTTGGCAGGGTAGTTTG
51423495 GCTGGGT
194 GCTGGGT
* * * * *
51423502 AGTTTTG-CATGATAGTCCATTTCAT-CCATATTTGAACT-CTTATAGAAATGTCATTTTAATTC
1 AG-TTTGACATGATAGTCCATTTCGTCCCA-ATTTGAA-TGTTTATAGAAATGTCCTCTTAATTT
*
51423564 TGCATTCAATCAAATTTTGGTA-GGACAGTTTGGC-------TT-G-AT---AGTCCATTTCGTA
63 TGCATTCAATCAAATTTTGGCAGGGA-AGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGT-
* * * ** *
51423616 T-AAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTTCATTCAATCAATTTTGGAAGGAAAAT
126 TCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGT
51423680 TTGGCTGGGT
191 TTGGCTGGGT
* * * **
51423690 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTATTCTTAATCTTT-
1 AGTTTGACATGATAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAAT-TTTG
* * * ** * * * *
51423754 CTTTCAATCAAATATTGGTAGGGCTGTTTGGCAGGTAGTTTGGCATGACAGTCTATTTTGTCCCA
65 CATTCAATCAAATTTTGGCAGGGAAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTTCCA
* * * *
51423819 ATTTGAATGCTTATAGAAATGACTTCTTAATTTTGCATTTAATCAAATATTT-GCAGGGTTGTTT
130 ATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AAT-TTTGGCAGGGTAGTTT
* *
51423883 AGCTGGAT
193 GGCTGGGT
* * * * * * * *
51423891 AGTTTGTCATGACAGTCTATTTCGTCCCAATTTAAATGCTTATAAAAATGTCTTTTTAATTTTGC
1 AGTTTGACATGATAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
*
51423956 ATTCAATCAAATATTGGC
66 ATTCAATCAAATTTTGGC
51423974 TATAGACACC
Statistics
Matches: 2014, Mismatches: 353, Indels: 185
0.79 0.14 0.07
Matches are distributed among these distances:
186 8 0.00
187 78 0.04
188 204 0.10
189 159 0.08
190 8 0.00
191 2 0.00
192 3 0.00
193 4 0.00
194 6 0.00
195 5 0.00
196 3 0.00
197 2 0.00
198 3 0.00
199 18 0.01
200 268 0.13
201 610 0.30
202 429 0.21
203 201 0.10
204 3 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.41
Consensus pattern (200 bp):
AGTTTGACATGATAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
ATTCAATCAAATTTTGGCAGGGAAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTTCCAA
TTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGTTTGGC
TGGGT
Found at i:51421833 original size:87 final size:88
Alignment explanation
Indices: 51421705--51421867 Score: 195
Period size: 87 Copynumber: 1.9 Consensus size: 88
51421695 TACATGGAAA
* ** * * * *
51421705 TTTAGCTGGGTATTTTGGCATGACTGTCCATTTTGTCCCAATTTTAATG-TTTATCGAAATGTCC
1 TTTAGCTGGGTAGTTTGGCATGACTAACCATTTAGTCCCAATCTGAATGCTTT-TAGAAATGTCC
*
51421769 ACTTAATTTTGCATTCAGTTAAAT
65 ACTGAATTTTGCATTCAGTTAAAT
* * * *
51421793 TTTAGTTGGGTAGTTTGTCATGA-TAACCATTTAGTTCCAATCTGAATGCTTTTAGAAATGTCCT
1 TTTAGCTGGGTAGTTTGGCATGACTAACCATTTAGTCCCAATCTGAATGCTTTTAGAAATGTCCA
51421857 CTGAATTTTGC
66 CTGAATTTTGC
51421868 GTTCGATCAA
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
87 39 0.63
88 23 0.37
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (88 bp):
TTTAGCTGGGTAGTTTGGCATGACTAACCATTTAGTCCCAATCTGAATGCTTTTAGAAATGTCCA
CTGAATTTTGCATTCAGTTAAAT
Found at i:51422398 original size:88 final size:88
Alignment explanation
Indices: 51422294--51422589 Score: 250
Period size: 88 Copynumber: 3.2 Consensus size: 88
51422284 GCAGAGCAGT
* * * * * *
51422294 TTGGCTGGGTAGTTTGGTATGATAGTTCATTTCATATCAATTTAAATGTTTATAGAAATGTCCTC
1 TTGGCAGGGTAGTTTGGCATGACAATTCATTTCATACCAATTTAAATGCTTATAGAAATGTCCTC
* *
51422359 TTAATTTTGCGTTCAATCAAATT
66 TTAATTTTGCATTCAATCAAATA
* * * * * *
51422382 TTGGTAGGGTAGTTTGGCGTGACAATTCATTTTATCCCATTTTGAATGCTTATAGAAATGTCCTC
1 TTGGCAGGGTAGTTTGGCATGACAATTCATTTCATACCAATTTAAATGCTTATAGAAATGTCCTC
*
51422447 TTAATTTTGTATTCAATCAAATA
66 TTAATTTTGCATTCAATCAAATA
* * * * * *
51422470 TTGGCAGGTTAGTTTGGCTTGGTAGTTTGACATTACAATCCATTTCGTCCCAATTTGAATGTTTA
1 TTGGCAGGGTAGTTTGGC-----A---TG--A---CAATTCATTTCATACCAATTTAAATGCTTA
* *
51422535 TAGAAATGTCCTCTTACTTGTGCATTCAATCAAAATA
53 TAGAAATGTCCTCTTAATTTTGCATTCAATC-AAATA
*
51422572 TTGACAGGGTAGTTTGGC
1 TTGGCAGGGTAGTTTGGC
51422590 TGTGTAGTTT
Statistics
Matches: 166, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
88 89 0.54
96 2 0.01
98 1 0.01
101 53 0.32
102 21 0.13
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (88 bp):
TTGGCAGGGTAGTTTGGCATGACAATTCATTTCATACCAATTTAAATGCTTATAGAAATGTCCTC
TTAATTTTGCATTCAATCAAATA
Found at i:51422798 original size:13 final size:13
Alignment explanation
Indices: 51422780--51422805 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51422770 ATTTTGGTTG
51422780 GGAAATCTGGCAT
1 GGAAATCTGGCAT
51422793 GGAAATCTGGCAT
1 GGAAATCTGGCAT
51422806 CACATTCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (13 bp):
GGAAATCTGGCAT
Found at i:51423604 original size:88 final size:87
Alignment explanation
Indices: 51423502--51423685 Score: 226
Period size: 88 Copynumber: 2.1 Consensus size: 87
51423492 TTGGCTGGGT
* * * * *
51423502 AGTTTTGCATGATAGTCCATTTCATCCATATTTGAACT-CTTATAGAAATGTCATTTTAATTCTG
1 AGTTTGGCTTGATAGTCCATTTCATACAAATTTGAA-TGCTTATAGAAATGTCATCTTAATTCTG
* *
51423566 CATTCAATCAAATTTTGGTAGGAC
65 CATTCAATC-AATTTTGGAAGGAA
* * * * *
51423590 AGTTTGGCTTGATAGTCCATTTCGTATAAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTTC
1 AGTTTGGCTTGATAGTCCATTTCATACAAATTTGAATGCTTATAGAAATGTCATCTTAATTCTGC
51423655 ATTCAATCAATTTTGGAAGGAA
66 ATTCAATCAATTTTGGAAGGAA
*
51423677 AATTTGGCT
1 AGTTTGGCT
51423686 GGGTAGTTTG
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
87 21 0.26
88 61 0.74
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.41
Consensus pattern (87 bp):
AGTTTGGCTTGATAGTCCATTTCATACAAATTTGAATGCTTATAGAAATGTCATCTTAATTCTGC
ATTCAATCAATTTTGGAAGGAA
Found at i:51424135 original size:3 final size:3
Alignment explanation
Indices: 51424127--51424174 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
51424117 AAGGGCCCAA
* * * *
51424127 ATT ATT ATT ATC ATT ACT ACT ATT ATT ATT ATT AAAT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT
51424173 AT
1 AT
51424175 CTTTTTCATT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
3 36 0.95
4 2 0.05
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (3 bp):
ATT
Found at i:51427927 original size:50 final size:50
Alignment explanation
Indices: 51427852--51428019 Score: 246
Period size: 50 Copynumber: 3.3 Consensus size: 50
51427842 GCAACTAGTA
* *
51427852 ATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGAAAATG
1 ATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAAAATG
* *
51427902 ATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAAAGTG
1 ATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAAAATG
* * *
51427952 ATAAGTGATAGCTTCCGCTACACTTATCTGATCAAGGACAAATGACAAGTG
1 ATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA-AAATG
* *
51428003 AAAAGTGGTAGCTTCGG
1 ATAAGTGATAGCTTCGG
51428020 TTACCTGATC
Statistics
Matches: 107, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
50 88 0.82
51 19 0.18
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (50 bp):
ATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAAAATG
Found at i:51428037 original size:31 final size:31
Alignment explanation
Indices: 51427999--51428178 Score: 263
Period size: 31 Copynumber: 5.8 Consensus size: 31
51427989 ACAAATGACA
*
51427999 AGTGAAAAGTGGTAGCTTCGGTTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
51428030 AGTGAAAAGTGATAGCTTCGGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
51428061 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
51428092 AATGAATAA-TGGTAGCTTTGGCTACCTGATC
1 AGTGAA-AAGTGGTAGCTTCGGCTACCTGATC
*
51428123 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
51428154 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
51428179 AAGTGACAAG
Statistics
Matches: 132, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
30 2 0.02
31 128 0.97
32 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:51428296 original size:46 final size:46
Alignment explanation
Indices: 51428200--51428409 Score: 191
Period size: 46 Copynumber: 4.6 Consensus size: 46
51428190 GATTTCCGCA
* * *
51428200 TAAGACCATATCTGGGATATGGCATCAGTGTGATCATGCT-ACT-GTA
1 TAAGACCATAGCTGGGATATGGCATCAGTGTGAT-ATG-TGATTCGTG
* * *
51428246 TAAGACCATATCTGAGATATGGCATCAGTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGATATGGCATCAGTGTGATATGTGATTCGTG
* * *
51428292 TAAGACCATAGCTGGGCTATGGCATTGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGATATGGCA-TCA-GTGTGATATGTGATT-CGTG
* * *
51428341 TAAGACCATAGCTGGGCTATGGCATC-G-AT-ATATG-AATAT-GTG
1 TAAGACCATAGCTGGGATATGGCATCAGTGTGATATGTGAT-TCGTG
* *
51428383 TAAGACCATAGCTGGGCTATGACATCA
1 TAAGACCATAGCTGGGATATGGCATCA
51428410 TTATGTTAAG
Statistics
Matches: 142, Mismatches: 15, Indels: 17
0.82 0.09 0.10
Matches are distributed among these distances:
42 28 0.20
43 2 0.01
44 7 0.05
45 6 0.04
46 55 0.39
47 2 0.01
48 14 0.10
49 28 0.20
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (46 bp):
TAAGACCATAGCTGGGATATGGCATCAGTGTGATATGTGATTCGTG
Found at i:51428347 original size:49 final size:48
Alignment explanation
Indices: 51428277--51428408 Score: 186
Period size: 49 Copynumber: 2.9 Consensus size: 48
51428267 GCATCAGTGA
* *
51428277 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATTGATATGT
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATAT
51428325 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGATATAT
1 GATATGTGATT-CGTGTAAGACCATAGCTGGGCTATGGCATCGATATAT
*
51428374 GA-A--T-A-T-GTGTAAGACCATAGCTGGGCTATGACATC
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATC
51428409 ATTATGTTAA
Statistics
Matches: 80, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
42 28 0.35
44 1 0.01
45 1 0.01
46 1 0.01
48 12 0.15
49 37 0.46
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.30
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATAT
Found at i:51428384 original size:42 final size:41
Alignment explanation
Indices: 51428338--51428449 Score: 145
Period size: 42 Copynumber: 2.7 Consensus size: 41
51428328 ATGTGATTAC
*
51428338 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATG-AATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATC-AT-TATGTAAGAT
*
51428380 GTGTAAGACCATAGCTGGGCTATGACATCATTATGTTAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCATTATG-TAAGAT
* **
51428422 GTGTAAGACCATAGTTGAACTATGGCAT
1 GTGTAAGACCATAGCTGGGCTATGGCAT
51428450 TGAGAAAACG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
40 4 0.06
41 2 0.03
42 56 0.90
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (41 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCATTATGTAAGAT
Found at i:51429623 original size:100 final size:100
Alignment explanation
Indices: 51429475--51432549 Score: 2503
Period size: 101 Copynumber: 31.0 Consensus size: 100
51429465 CGTTATGACA
* * * *
51429475 TTGGCAAGATAGTTTGGCTGGGTAGTTTCGCATGACAGTCCATTTCGTACCAATTTGAATGCTTA
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
* *
51429540 TAGAAATGTCCTCTTAATTTTGTATTTAATCAATT
66 TAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
* * * *
51429575 TTTGCAGGGAAGTTTGGCTGGGTAGTTTCGCATGACAGTCCATTTCGTACCAATTTGAATGCTTA
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
* ** *
51429640 TAAAAATGTCCTCTTAATTTTTTATTTAATCAATT
66 TAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
* * * *
51429675 TTTGCAGGGAAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTT-ATTCCCAATTTGAATGGTT
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCA-TACCAATTTGAATGCTT
*
51429739 ATTGAAATGTCCTCTTAATTTTGCATTCAATCAATT
65 ATAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
* * * * * * *
51429775 TTTGTAGGGAAGTTTGGCTAGGTAGTTTGGAATGACAGTCCATTTC-TTCTCAATTTGAATGTTT
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATAC-CAATTTGAATGCTT
* *
51429839 ATCGAAATGTCCTCTTAATTTTGCATTCAATTAAATT
65 ATAGAAATGTCCTCTTAATTTTGCATTCAA-TCAATT
* * * * * * * ** *
51429876 TTGGCA-GATAAATTTGGATGGG-AATTCTAGAATGACTGTCCATTTTGTGCCAATTTGAACT-C
1 TTGGCAGGGT-AGTTTGGCTGGGTAGTT-TGGCATGACAGTCCATTTCATACCAATTTGAA-TGC
*
51429938 TTATAGAAATGTCCTCTTAATTTTACATTCAAT-AA--
63 TTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
* * * *
51429973 -----A----ATTTTGGCCT-GGTAGTTTGGCATGACAGTCTATTTCGTCCCAATTTGAATGCTT
1 TTGGCAGGGTAGTTTGG-CTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTT
* *
51430028 ATAGAAATGTCCTCTTACTTTTGTATTCAATCAATT
65 ATAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
* * * ** * * * * *
51430064 TTAGAATGACAGTTTGGCTGGGTAGTTTGACATGACCA-TCCATTTCGTCCCAATTTTAACGCTT
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGA-CAGTCCATTTCATACCAATTTGAATGCTT
* *
51430128 ATCGAAATGTCCTCTTAATTTTGCATTTAATCAATT
65 ATAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
* * *
51430164 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGCCATGACAGTCCATTTCATCCCAATTTTAATGCTTA
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
* *
51430229 TAGAAATGTCCTCTTAATTTTACATTTAATCAATT
66 TAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
* * * *
51430264 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGCCATGACAGTCTATTTCATCCCAATTTGAATGGTTA
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
* *
51430329 TAGAAATATCCTCTTAATTTTGTATTCAATCAAATT
66 TAGAAATGTCCTCTTAATTTTGCATTCAATC-AATT
* * *
51430365 TTGGC-GAGGTAGTTTGGCTGGGTAGTTTGGCATGATAGCCCATTTCATCCCAATTTGAACT-CT
1 TTGGCAG-GGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAA-TGCT
*
51430428 TATAGAAATGTCCTCTTAATTTTGCATTCAATAAAATT
64 TATAGAAATGTCCTCTTAATTTTGCATTCAAT-CAATT
* ** * * *
51430466 TTGACAAAGTAGTTTGGCTGGGTAGTTTGGTATGACGGTCTATTTCAT-CCTAATTTGAATGCTT
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACC-AATTTGAATGCTT
* * *
51430530 ATAAAAATGTCTTATTAATTTTGCATTCAATCAATT
65 ATAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
** * * * ** *
51430566 TTGGCAGGACAGTTTGCCTGGATAGTTT-TCATTTC-GT-C---T--T---AATTTGAATGTTTA
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
* * * *
51430620 TAAAAATATCCTCTTAATTTTGTATTGAATCAAATT
66 TAGAAATGTCCTCTTAATTTTGCATTCAATC-AATT
* * * * * * *
51430656 ATT--CTAGAGCAATTTGGTTGGGTAGTTTGGCATAACAATCCATTTCATCCCAATTTGAACT-C
1 -TTGGC-AGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAA-TGC
* *
51430718 TTATAGAAATGTCCTTTTAATTTTGCATTCAATAAAATT
63 TTATAGAAATGTCCTCTTAATTTTGCATTCAAT-CAATT
* * * * * * * * * *
51430757 TTGTCAAGGCAGTTTGGCTTGATAATTTGGCATGATAGTCTA-TTCTATCCCAATTTGAATGCCT
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTC-ATACCAATTTGAATGCTT
* * * *
51430821 ATAGAATTGTCTTCTTAATTTTGCATTAAATAAATT
65 ATAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
* * * * * * *
51430857 TTTGCAAGGTAGTTTGGC-----A--TT-ACA--A-A--CCATTTCGTTCTAATTTGAATGTTTA
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
* * *
51430909 TAGAAATGTCCTCTGAATTTTTCATTCACTCAA--
66 TAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
* * * * *
51430942 -----A---T--TTTGGCAGGGTAGTTTGGCATGACAGTTCATTTTATCCCATTTTGAATGCTTA
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
* * *
51430997 TAGAAATGTTCGCTTAATTTTGCATTCAATCAAATC
66 TAGAAATGTCCTCTTAATTTTGCATTCAATC-AATT
* ** * * * * *
51431033 TTGGTAACGTAGTTTGGCTTGGTAGCTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTA
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
* * *
51431098 TAGAAATGTCCTCTTAATTGTGCACTCAATCAAATA
66 TAGAAATGTCCTCTTAATTTTGCATTCAATC-AATT
* * * * ** * * * *
51431134 TTGGCAAGGCAGTTTGGCTGTGTAGTTTGGCATCACTTTTCATTTCATTCCCATTTGATTGCTTA
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
** *
51431199 TAGAAATGTTGTCTTAATTTTGCATTCAATCTATT
66 TAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
* * * * * ** * * *
51431234 TTGGTA-AGTAGGTTTGGCTGGGTAGTTTGACAAGATAGTCCATTTTGTCCCAATTTGAAAGTTT
1 TTGGCAGGGTA-GTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTT
51431298 ATCA-AAATGTCCT-TTCAATTTTGCATTCAATCAAATT
65 AT-AGAAATGTCCTCTT-AATTTTGCATTCAATC-AATT
* * * * * * * *
51431335 TTGGCTA-GGAAATTTGGCAT-GGAAGTTTGGCATCATAGTCAATTTCGTCCCAATTTGAATGCT
1 TTGGC-AGGGTAGTTTGGC-TGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCT
**
51431398 TATAGAAATGTTATCTTAATTTTGCATTCAATCAATT
64 TATAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
* * * * *
51431435 TTGGCAGGG-AGGTTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCGTCCCAATTTGAAAGTTT
1 TTGGCAGGGTA-GTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTT
*
51431499 ATAGAAATGTCCTTTTCAATTTTGCATTCAATCAAATT
65 ATAGAAATGTCCTCTT-AATTTTGCATTCAATC-AATT
* * * * * * * * *
51431537 TCGGCTGGGAAATTTGGTTAGGTAGTTTGGCATGATAGTCTATTTCGT-CCAAATTTGAACT-CT
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACC-AATTTGAA-TGCT
** *
51431600 TATAGAAATGTAATCTTAATTTTGCATTTAATCAAATT
64 TATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATT
* * * * * * ** * *
51431638 TTAGTAGGGCAGTTTCGCTTGGTAGTTCT-GCATGATAGTCCATTTTGTCCCAATTTGAATGTTT
1 TTGGCAGGGTAGTTTGGCTGGGTAGTT-TGGCATGACAGTCCATTTCATACCAATTTGAATGCTT
* * *
51431702 ATAGAAATGTCCTTTTAATTTTGCGTTCGATCAATT
65 ATAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
* * * *
51431738 TTTGCAGGGTAGTTTGGCTGGGTAGTTTGTCATGACAGTCCATTCCGT-CCAAATTTGAATGCTT
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACC-AATTTGAATGCTT
* *
51431802 AAAGAAAT-TCCTTCTTAATTTTGTATTCAATCAATT
65 ATAGAAATGTCC-TCTTAATTTTGCATTCAATCAATT
** * * * * * * * *
51431838 TTTTCAGGGAAGTTTGGTTGGGTAGTTTGACATTACAGTCCATTGC-TTCAAAATTTGAATGTTT
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATAC-CAATTTGAATGCTT
* * *
51431902 GTCGAAATGTCCTCTTAATTTTGCATTTAATCAAATT
65 ATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATT
** * * * * * *
51431939 TTGGCAGGCAAATTTTGTTGGGTAGTTTGGCATGACAGTTCATTTCATACCAATTTGAACGTTTA
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
51432004 TAGAAATGTCCTCTTAATTTTGCATTCAATCAAATT
66 TAGAAATGTCCTCTTAATTTTGCATTCAATC-AATT
* * * * * * * * *
51432040 TT-TCTTGAGAAATTTGGATGGGTAGTTTTGCATGATAGTCCATTTCAT-CCATATTTTAACT-C
1 TTGGC-AGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCA-ATTTGAA-TGC
* * *
51432102 TTATAGAAATGTCATTTTAATTCTGCATTCAATCAAATT
63 TTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATT
* ** * * * * ** **
51432141 TTGGTAGGACAGTTTGGCTTGGTTGTTTGGCTTGATAGTCCATTTTGTATAAATTTGAATGCTTA
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
* *
51432206 TAAAAATGTCCTCTTAATTTTTCGTAATTTTTCGTTCAATCAATT
66 TAGAAATGTCCTCTTAA-TTTT-G--------CATTCAATCAATT
* ** * * *
51432251 TTGGCAAGACAATTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTA
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
* * * * **
51432316 TAGCAATGACTTCTTAATTTTTCATTCAATCAAACA
66 TAGAAATGTCCTCTTAATTTTGCATTCAATC-AATT
* * *
51432352 TTAGCAGGGCT-GTTTGGCT-GGTATTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTT
1 TTGGCAGGG-TAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTT
* *
51432415 ATAGAAATGACTTCTTAATTTTGCATTCAATCAAATAT
65 ATAGAAATGTCCTCTTAATTTTGCATTCAATC-AAT-T
* * * * *
51432453 TT-GCAGGGTTGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTCCCAATTTAAATGCTTA
1 TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
* * *
51432517 TAGAAATGTCTTTTTAATTTTACATTCAATCAA
66 TAGAAATGTCCTCTTAATTTTGCATTCAATCAA
51432550 ATATTGGCTG
Statistics
Matches: 2446, Mismatches: 401, Indels: 256
0.79 0.13 0.08
Matches are distributed among these distances:
75 6 0.00
77 1 0.00
80 2 0.00
82 2 0.00
83 2 0.00
85 1 0.00
86 1 0.00
87 43 0.02
88 113 0.05
89 49 0.02
90 22 0.01
91 6 0.00
92 5 0.00
93 3 0.00
94 1 0.00
95 1 0.00
96 3 0.00
98 3 0.00
99 27 0.01
100 980 0.40
101 1002 0.41
102 88 0.04
103 2 0.00
109 4 0.00
110 71 0.03
111 8 0.00
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (100 bp):
TTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACCAATTTGAATGCTTA
TAGAAATGTCCTCTTAATTTTGCATTCAATCAATT
Found at i:51429980 original size:88 final size:88
Alignment explanation
Indices: 51429888--51430058 Score: 202
Period size: 88 Copynumber: 1.9 Consensus size: 88
51429878 GGCAGATAAA
* * *
51429888 TTTGG-ATGGGAATTCTAGAATGACTGTCCATTTTGTGCCAATTTGAACT-CTTATAGAAATGTC
1 TTTGGCATGGGAATT-TAGAATGACAGTCCATTTCGTCCCAATTTGAA-TGCTTATAGAAATGTC
51429951 CTCTTAATTTTACATTCAATAAAAT
64 CTCTTAATTTTACATTCAATAAAAT
* * * * * *
51429976 TTTGGCCTGGTAGTTTGGCATGACAGTCTATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
1 TTTGGCATGGGAATTTAGAATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* **
51430041 CTTACTTTTGTATTCAAT
66 CTTAATTTTACATTCAAT
51430059 CAATTTTAGA
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
87 1 0.01
88 62 0.90
89 6 0.09
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.41
Consensus pattern (88 bp):
TTTGGCATGGGAATTTAGAATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
CTTAATTTTACATTCAATAAAAT
Found at i:51430181 original size:13 final size:13
Alignment explanation
Indices: 51430163--51430192 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
51430153 TTTAATCAAT
51430163 TTTGGCAGGGTAG
1 TTTGGCAGGGTAG
*
51430176 TTTGGCTGGGTAG
1 TTTGGCAGGGTAG
51430189 TTTG
1 TTTG
51430193 CCATGACAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.07, G:0.43, T:0.40
Consensus pattern (13 bp):
TTTGGCAGGGTAG
Found at i:51430281 original size:13 final size:13
Alignment explanation
Indices: 51430263--51430292 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
51430253 TTTAATCAAT
51430263 TTTGGCAGGGTAG
1 TTTGGCAGGGTAG
*
51430276 TTTGGCTGGGTAG
1 TTTGGCAGGGTAG
51430289 TTTG
1 TTTG
51430293 CCATGACAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.07, G:0.43, T:0.40
Consensus pattern (13 bp):
TTTGGCAGGGTAG
Found at i:51430444 original size:201 final size:200
Alignment explanation
Indices: 51429976--51432557 Score: 2280
Period size: 201 Copynumber: 13.0 Consensus size: 200
51429966 TCAATAAAAT
* * *
51429976 TTTGGCCT-GGTAGTTTGGCATGACAGTCTATTTCGTCCCAATTTGAATGCTTATAGAAATGTCC
1 TTTGG-CTGGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGTCC
* * * * * ** *
51430040 TCTTACTTTTGTATTCAATCAATTTTAGAATGACAGTTTGGCTGGGTAGTTTGACATGACCA-TC
65 TCTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGA-CAGTC
* * * *
51430104 CATTTCGTCCCAATTTTAACGCTTATCGAAATGTCCTCTTAATTTTGCATTTAATC-AATTTTGG
129 CATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGG
*
51430168 CAGGGTAG
194 CA-GGCAG
* * *
51430176 TTTGGCTGGGTAGTTTGCCATGACAGTCCATTTCATCCCAATTTTAATGCTTATAGAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGTCCT
* * * *
51430241 CTTAATTTTACATTTAATCAATTTTGGCAGGGTAGTTTGGCTGGGTAGTTTGCCATGACAGTCTA
66 CTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCA
* * * *
51430306 TTTCATCCCAATTTGAATGGTTATAGAAATATCCTCTTAATTTTGTATTCAATCAAATTTTGGCG
131 TTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGC-
*
51430371 AGGTAG
195 AGGCAG
*
51430377 TTTGGCTGGGTAGTTTGGCATGATAGCCCATTTCATCCCAATTTGAACT-CTTATAGAAATGTCC
1 TTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAA-TGCTTATAGAAATGTCC
* * ** * *
51430441 TCTTAATTTTGCATTCAATAAAATTTTGACAAAGTAGTTTGGCTGGGTAGTTTGGTATGACGGTC
65 TCTTAATTTTGCATTCAAT-CAATTTTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTC
* * * * * *
51430506 TATTTCATCCTAATTTGAATGCTTATAAAAATGTCTTATTAATTTTGCATTCAATC-AATTTTGG
129 CATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGG
51430570 CAGGACAG
194 CAGG-CAG
* * * ** * * *
51430578 TTTGCCTGGATAG--T----T--T--T-CATTTCGTCTTAATTTGAATGTTTATAAAAATATCCT
1 TTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGTCCT
* * * * * * * *
51430632 CTTAATTTTGTATTGAATCAAATTATT--CTAGAGCAATTTGGTTGGGTAGTTTGGCATAACAAT
66 CTTAATTTTGCATTCAATC-AATT-TTGGC-AGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGT
* * *
51430695 CCATTTCATCCCAATTTGAACT-CTTATAGAAATGTCCTTTTAATTTTGCATTCAATAAAATTTT
128 CCATTTCGTCCCAATTTGAA-TGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
*
51430759 GTCAAGGCAG
192 GGC-AGGCAG
* * * * * * *
51430769 TTTGGCTTGATAATTTGGCATGATAGTCTA-TTCTATCCCAATTTGAATGCCTATAGAATTGTCT
1 TTTGGCTGGGTAGTTTGGCATGATAGTCCATTTC-ATCCCAATTTGAATGCTTATAGAAATGTCC
* * * * *
51430833 TCTTAATTTTGCATTAAATAAATTTTTGCAAGGTAGTTTGGC-----A--TT-ACA--A-A--CC
65 TCTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCC
* * * * * *
51430885 ATTTCGTTCTAATTTGAATGTTTATAGAAATGTCCTCTGAATTTTTCATTCACTCAAATTTT---
130 ATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGC
51430947 -GGCA-
195 AGGCAG
* * * * * *
51430951 -------GGGTAGTTTGGCATGACAGTTCATTTTATCCCATTTTGAATGCTTATAGAAATGTTCG
1 TTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGTCCT
* * ** * *
51431009 CTTAATTTTGCATTCAATCAAATCTTGGTAACGTAGTTTGGCTTGGTAGCTTGGCATGACAGTCC
66 CTTAATTTTGCATTCAATC-AATTTTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCC
* * * *
51431074 ATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTGTGCACTCAATCAAATATTGGC
130 ATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGC
51431139 AAGGCAG
195 -AGGCAG
* * * * * *
51431146 TTTGGCTGTGTAGTTTGGCATCACT-TTTCATTTCATTCCC-ATTTGATTGCTTATAGAAATGTT
1 TTTGGCTGGGTAGTTTGGCATGA-TAGTCCATTTCA-TCCCAATTTGAATGCTTATAGAAATGTC
* * * * * * *
51431209 GTCTTAATTTTGCATTCAATCTATTTTGGTA-AGTAGGTTTGGCTGGGTAGTTTGACAAGATAGT
64 CTCTTAATTTTGCATTCAATCAATTTTGGCAGGGTA-GTTTGGCTGGGTAGTTTGGCATGACAGT
* * *
51431273 CCATTTTGTCCCAATTTGAAAGTTTATCA-AAATGTCCT-TTCAATTTTGCATTCAATCAAATTT
128 CCATTTCGTCCCAATTTGAATGCTTAT-AGAAATGTCCTCTT-AATTTTGCATTCAATCAAATTT
* *
51431336 TGGCTAGGAAA
191 TGGC-AGGCAG
* * * * **
51431347 TTTGGCAT-GGAAGTTTGGCATCATAGTCAATTTCGTCCCAATTTGAATGCTTATAGAAATGTTA
1 TTTGGC-TGGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGTCC
*
51431411 TCTTAATTTTGCATTCAATCAATTTTGGCAGGG-AGGTTTGGCTGGGTAGTTTGGCATGATAGTC
65 TCTTAATTTTGCATTCAATCAATTTTGGCAGGGTA-GTTTGGCTGGGTAGTTTGGCATGACAGTC
* * * *
51431475 CATTTCGTCCCAATTTGAAAGTTTATAGAAATGTCCTTTTCAATTTTGCATTCAATCAAATTTCG
129 CATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTT-AATTTTGCATTCAATCAAATTTTG
* * *
51431540 GCTGGGAAA
193 GC-AGGCAG
* * * * * **
51431549 TTTGGTTAGGTAGTTTGGCATGATAGTCTATTTCGTCCAAATTTGAACT-CTTATAGAAATGTAA
1 TTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAA-TGCTTATAGAAATGTCC
* * * * * * *
51431613 TCTTAATTTTGCATTTAATCAAATTTTAGTAGGGCAGTTTCGCTTGGTAGTTCT-GCATGATAGT
65 TCTTAATTTTGCATTCAATC-AATTTTGGCAGGGTAGTTTGGCTGGGTAGTT-TGGCATGACAGT
* * * * * *
51431677 CCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTTTTAATTTTGCGTTCGATC-AATTTTT
128 CCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTG
*
51431741 GCAGGGTAG
193 GCA-GGCAG
* * * * * *
51431750 TTTGGCTGGGTAGTTTGTCATGACAGTCCATTCCGTCCAAATTTGAATGCTTAAAGAAAT-TCCT
1 TTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGTCC-
* ** * * * *
51431814 TCTTAATTTTGTATTCAATCAATTTTTTCAGGGAAGTTTGGTTGGGTAGTTTGACATTACAGTCC
65 TCTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCC
* * ** * * * *
51431879 ATTGCTTCAAAATTTGAATGTTTGTCGAAATGTCCTCTTAATTTTGCATTTAATCAAATTTTGGC
130 ATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGC
*
51431944 AGGCAAA
195 AGGC-AG
* * * * * * *
51431951 TTTTGTTGGGTAGTTTGGCATGACAGTTCATTTCATACCAATTTGAACGTTTATAGAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGTCCT
* * * * * * * *
51432016 CTTAATTTTGCATTCAATCAAATTTT-TCTTGAGAAATTTGGATGGGTAGTTTTGCATGATAGTC
66 CTTAATTTTGCATTCAATC-AATTTTGGC-AGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTC
* * * * *
51432080 CATTTCAT-CCATATTTTAACT-CTTATAGAAATGTCATTTTAATTCTGCATTCAATCAAATTTT
129 CATTTCGTCCCA-ATTTGAA-TGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
*
51432143 GGTAGGACAG
192 GGCAGG-CAG
* * * ** *** *
51432153 TTTGGCTTGGTTGTTTGGCTTGATAGTCCATTTTGTATAAATTTGAATGCTTATAAAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGTCCT
* * ** *
51432218 CTTAATTTTTCGTAATTTTTCGTTCAATCAATTTTGGCAAGACAATTTGGCTGGGTAGTTTGGCA
66 CTTAA-TTTT-G--------CATTCAATCAATTTTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCA
* * * *
51432283 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGCAATGACTTCTTAATTTTTCATTCAATCA
121 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCA
** * *
51432348 AACATTAGCAGGGCTG
186 AATTTTGGCA-GGCAG
* * * *
51432364 TTTGGCT-GGTATTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGACTT
1 TTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGTCCT
* *
51432428 CTTAATTTTGCATTCAATCAAATATTT-GCAGGGTTGTTTGGCTGGATAGTTTGGCATGACAGTC
66 CTTAATTTTGCATTCAATC-AAT-TTTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTC
* * * * *
51432492 CATTTCGTCCCAATTTAAATGCTTATAGAAATGTCTTTTTAATTTTACATTCAATCAAATATTGG
129 CATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGG
51432557 C
194 C
51432558 TGTAGACACC
Statistics
Matches: 1958, Mismatches: 323, Indels: 201
0.79 0.13 0.08
Matches are distributed among these distances:
175 59 0.03
176 20 0.01
181 1 0.00
183 6 0.00
184 2 0.00
186 1 0.00
187 2 0.00
188 53 0.03
189 58 0.03
190 125 0.06
191 25 0.01
192 3 0.00
193 4 0.00
194 6 0.00
195 1 0.00
196 1 0.00
197 1 0.00
199 7 0.00
200 260 0.13
201 611 0.31
202 463 0.24
203 85 0.04
204 3 0.00
208 1 0.00
209 4 0.00
210 51 0.03
211 91 0.05
212 14 0.01
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (200 bp):
TTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGTCCT
CTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGTTTGGCTGGGTAGTTTGGCATGACAGTCCA
TTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCA
GGCAG
Found at i:51430989 original size:88 final size:87
Alignment explanation
Indices: 51430782--51431050 Score: 279
Period size: 88 Copynumber: 3.1 Consensus size: 87
51430772 GGCTTGATAA
* * * * *
51430782 TTTGGCATGATAGTCTATTCTATCCCAATTTGAATGCCTATAGAATTGTCTTCTTAATTTTGCAT
1 TTTGGCATGACAGTC-ATTTTATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCAT
* *
51430847 TAAAT-AAATTTTTGCAAGGTAG
65 TCAATCAAATTTTGGCAAGGTAG
* ** ** * * * * *
51430869 TTTGGCATTACAAACCATTTCGTTCTAATTTGAATGTTTATAGAAATGTCCTCTGAATTTTTCAT
1 TTTGGCATGAC-AGTCATTTTATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCAT
* *
51430934 TCACTCAAATTTTGGCAGGGTAG
65 TCAATCAAATTTTGGCAAGGTAG
* * *
51430957 TTTGGCATGACAGTTCATTTTATCCCATTTTGAATGCTTATAGAAATGTTCGCTTAATTTTGCAT
1 TTTGGCATGACAG-TCATTTTATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCAT
* * *
51431022 TCAATCAAATCTTGGTAACGTAG
65 TCAATCAAATTTTGGCAAGGTAG
51431045 TTTGGC
1 TTTGGC
51431051 TTGGTAGCTT
Statistics
Matches: 142, Mismatches: 37, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
87 51 0.36
88 91 0.64
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (87 bp):
TTTGGCATGACAGTCATTTTATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATT
CAATCAAATTTTGGCAAGGTAG
Found at i:51432268 original size:110 final size:111
Alignment explanation
Indices: 51432129--51432436 Score: 280
Period size: 110 Copynumber: 2.9 Consensus size: 111
51432119 TAATTCTGCA
* * * * * * * * *
51432129 TTCAATCAAATTTTGGTAGGACAGTTTGGCTTGGTTGTTTGGCTTGATAGTCCATTTTGTATAAA
1 TTCAATCAAATTTTGGCAAGACAATTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTACAAA
*
51432194 TTTGAATGCTTATAAAAATGTCCTCTTAATTTTTCGTAATTTTTCG
66 TTTGAATGCTTATAAAAATGACCTCTTAATTTTTCGTAATTTTTCG
* *
51432240 TTCAATC-AATTTTGGCAAGACAATTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAA
1 TTCAATCAAATTTTGGCAAGACAATTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTACAAA
** *
51432304 TTTGAATGCTTATAGCAATGACTTCTTAATTTTTC---A-------
66 TTTGAATGCTTATAAAAATGACCTCTTAATTTTTCGTAATTTTTCG
** * * * ** * * * *
51432340 TTCAATCAAACATTAGCAGGGCTGTTTGGCT-GGTATTTTGGCATGACAGTCCATTTCATCCCAA
1 TTCAATCAAATTTTGGCAAGACAATTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTACAAA
* *
51432404 TTTGAATGCTTATAGAAATGACTTCTTAATTTT
66 TTTGAATGCTTATAAAAATGACCTCTTAATTTT
51432437 GCATTCAATC
Statistics
Matches: 171, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
100 70 0.41
101 16 0.09
107 1 0.01
110 77 0.45
111 7 0.04
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.41
Consensus pattern (111 bp):
TTCAATCAAATTTTGGCAAGACAATTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTACAAA
TTTGAATGCTTATAAAAATGACCTCTTAATTTTTCGTAATTTTTCG
Found at i:51432552 original size:101 final size:100
Alignment explanation
Indices: 51432263--51432554 Score: 467
Period size: 100 Copynumber: 2.9 Consensus size: 100
51432253 GGCAAGACAA
*
51432263 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGCAATGACTT
1 TTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGACTT
* *
51432328 CTTAATTTTTCATTCAATCAAACATTAGCAGGGCTG
65 CTTAATTTTACATTCAATCAAATATTAGCAGGGCTG
* *
51432364 TTTGGCTGGTATTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGACTTC
1 TTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGACTTC
* * *
51432429 TTAATTTTGCATTCAATCAAATATTTGCAGGGTTG
66 TTAATTTTACATTCAATCAAATATTAGCAGGGCTG
* *
51432464 TTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTCCCAATTTAAATGCTTATAGAAATGTCTT
1 TTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGACTT
*
51432529 TTTAATTTTACATTCAATCAAATATT
65 CTTAATTTTACATTCAATCAAATATT
51432555 GGCTGTAGAC
Statistics
Matches: 177, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
100 95 0.54
101 82 0.46
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (100 bp):
TTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGACTTC
TTAATTTTACATTCAATCAAATATTAGCAGGGCTG
Found at i:51432903 original size:19 final size:20
Alignment explanation
Indices: 51432879--51432916 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
51432869 ACAACAAGCA
51432879 TTCTAT-TTT-TTTTCTTTTC
1 TTCTATCTTTCTTTT-TTTTC
51432898 TTCTATCTTTCTTTTTTTT
1 TTCTATCTTTCTTTTTTTT
51432917 TATAATAGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (20 bp):
TTCTATCTTTCTTTTTTTTC
Found at i:51433279 original size:153 final size:153
Alignment explanation
Indices: 51433104--51433402 Score: 462
Period size: 154 Copynumber: 2.0 Consensus size: 153
51433094 TTTAAAAGAG
51433104 AGTTTAGATTTTAAAAATAAAAATATGTTTTTTAGTCATTTTAAAGG-AAAGTTTAAAA-TTTTA
1 AGTTTAGATTTTAAAAATAAAAATATGTTTTTTAGTCATTTTAAAGGAAAAG-TTAAAATTTTTA
* * *
51433167 AAAT-AAGTTTTGATTTTTTTCAACTATTTCGAAATAAAAACTTTGATCTTTAAGAAAAGTAGTG
65 AAATAAAATTTTGATCTTTTTCAACTATTTCGAAAT-AAAACTTTGATCTTTAAGAAAAATAGTG
*
51433231 ATTTTTTTTAAAAGAAAAAAAATGAA
129 ATTTTTCTTAAAA-AAAAAAAATGAA
* *
51433257 AGTTTAGATTTTTAAGAA-AAAAATATGTTTTTTAGTCGTTTTAAAGGAAAAGTTAAAATTTTTA
1 AGTTTAGA-TTTTAAAAATAAAAATATGTTTTTTAGTCATTTTAAAGGAAAAGTTAAAATTTTTA
**
51433321 AAATAAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGATCTTTAAGAAAAATAGTGA
65 AAATAAAATTTTGATCTTTTTCAACTATTTCGAAATAAAACTTTGATCTTTAAGAAAAATAGTGA
51433386 TTTTTCTTAAAAAAAAA
130 TTTTTCTTAAAAAAAAA
51433403 GCTTTGATTT
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
153 47 0.35
154 58 0.43
155 29 0.22
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.41
Consensus pattern (153 bp):
AGTTTAGATTTTAAAAATAAAAATATGTTTTTTAGTCATTTTAAAGGAAAAGTTAAAATTTTTAA
AATAAAATTTTGATCTTTTTCAACTATTTCGAAATAAAACTTTGATCTTTAAGAAAAATAGTGAT
TTTTCTTAAAAAAAAAAAATGAA
Found at i:51434774 original size:100 final size:99
Alignment explanation
Indices: 51434627--51437611 Score: 1203
Period size: 101 Copynumber: 30.4 Consensus size: 99
51434617 GGCAGGACAA
* * * *
51434627 TTTGGCTAGGTAGTTTGGCATGAGAGTCCATTTCGTACCAATTTGAATGTTTATAGAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGT-CATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
*
51434692 CTTAATTTTGCATTCAATCAATTTTTGTAGGGAAG
65 CTTAATTTTGCATTCAATCAATTTTTGCAGGGAAG
* * * *
51434727 TTTGGCTGGGTAGTTTGGCATGACAGTCAGTTTCTTCCCAATTTGAATGTTTATTGAAGTGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCA-TTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* *
51434792 CTTAATTTT-CATTCAATCAAATTTTGGCAGGGAAA
65 CTTAATTTTGCATTCAATC-AATTTTTGCAGGGAAG
* * * * * *
51434827 TTTTG-TTGGTAGTTTGGCATGACAGTCCATTTTGTACCAATTCGAATGCTTATAGAAATGTCTT
1 TTTGGCTGGGTAGTTTGGCATGACAGT-CATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* *
51434891 CTTAATTTCGCATTCGATCAATTTTTGCAGGGAAG
65 CTTAATTTTGCATTCAATCAATTTTTGCAGGGAAG
* * * * * **
51434926 TTTGGCTAGGTAGTTTGGAATGACAGTTCATTTCTTCCCAATTTGAATGTTTATCGAAAAT-TTT
1 TTTGGCTGGGTAGTTTGGCATGACAG-TCATTTCGTCCCAATTTGAATGCTTATAG-AAATGTCC
* *
51434990 TCTTAATTTTGCATTCAATCAAATTTTGGCAGGGAAA
64 TCTTAATTTTGCATTCAATC-AATTTTTGCAGGGAAG
* * * * * *
51435027 TTTGGCTGGGAATTTTGGCATAACTGTCCATTTTGTCCCAATTTGAACT-CTTATAGAAATGTTC
1 TTTGGCTGGGTAGTTTGGCATGACAGT-CATTTCGTCCCAATTTGAA-TGCTTATAGAAATGTCC
* * *
51435091 TCTTAGTTTTACATTCAATCAAATTTT-----G-A-
64 TCTTAATTTTGCATTCAATCAATTTTTGCAGGGAAG
* * * *
51435120 -----CTTGGTAGTTTGGCATGGCAGTCTATTTCGTCCTAATTTGAATGCTTATAGAAATTTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTC-ATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * * * * *
51435180 CTAAATTTTACGTTCAATCAAATTTGGCAAGGCAA-
65 CTTAATTTTGCATTCAATCAATTTTTGC-AGGGAAG
* * *
51435215 TTTGGCTGGGTAGTTTTGCATGACAGTTCATTTCGTCCCGATTTGAATGCTTATAGAAATGTCTT
1 TTTGGCTGGGTAGTTTGGCATGACAG-TCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * * *
51435280 CTTAATTTTGCATTCAATCAATTTTAGAAAGGCAG
65 CTTAATTTTGCATTCAATCAATTTTTGCAGGGAAG
* *
51435315 TTTGGCTGGGTAGTTTGGCATGACCGTCCATTTCGTCCAAATTTGAATGCTTATAGAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGT-CATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* *
51435380 TTTAATTTTGCATT---T-AA-----CCA---AA-
65 CTTAATTTTGCATTCAATCAATTTTTGCAGGGAAG
* * * * * * *
51435402 TTTGGTTGAGAAGTTTGCCATGACAGTCTATTTCGTCCCAATTTGAATGTTTATGGAAATGTCAT
1 TTTGGCTGGGTAGTTTGGCATGACAGTC-ATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * * *
51435467 CTTAATTTTGCATTCAATAAAATTTTGGAAGGGTAG
65 CTTAATTTTGCATTCAAT-CAATTTTTGCAGGGAAG
* * * * *
51435503 TTTGGCTGGGTAGTTTGGCATGGCAGCCCAATTC-ACCTCAATTTGAACT-CTTATAGAAATGCC
1 TTTGGCTGGGTAGTTTGGCATGACAG-TCATTTCGTCC-CAATTTGAA-TGCTTATAGAAATGTC
* * * * ** *
51435566 CTCTTAATTTTGCATTTAATAAAATCTTGGCAAAGTAG
63 CTCTTAATTTTGCATTCAAT-CAATTTTTGCAGGGAAG
* * * * * * *
51435604 TTTGGTTGGGTAGTTTGGGATAACAGTTTATTTCGTCCTAATTTGAATGCTTATAAAAATGTCTT
1 TTTGGCTGGGTAGTTTGGCATGACAG-TCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* *
51435669 CTAAATTTTGCATTCAATCAATTTTGGCA-GGATAG
65 CTTAATTTTGCATTCAATCAATTTTTGCAGGGA-AG
** * * * * * *
51435704 TTTGATTAGGTAGTTTGACATGAGAGTCCATTTCATCCCAA--TG--T--TTATAAAAATTTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGT-CATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * *
51435763 CTTATTTTTGCATTCAATCAAATTCTT-CTAGAGTAA-
65 CTTAATTTTGCATTCAATC-AATTTTTGC-AG-GGAAG
* * * *
51435799 TTTGGC-GGAGTAGTTTGGCATAATAGTCTATTTCGTCCCAATTTGAACT-CTTATAAAAATGTT
1 TTTGGCTGG-GTAGTTTGGCATGACAGTC-ATTTCGTCCCAATTTGAA-TGCTTATAGAAATGTC
* * * ** *
51435862 CTCTTAATTTTGCTTTTAATAAAAATTTGTCAGGGCAG
63 CTCTTAATTTTGCATTCAATCAATTTTTG-CAGGGAAG
* * * * *
51435900 TTTGGCTTGGTAGTTTGGCATGACAGTCTATTTCATCTCAATTTGAATGCCTATTGAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTC-ATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
51435965 CTTAATTTTGCATTCAATCAATTTTT--------G
65 CTTAATTTTGCATTCAATCAATTTTTGCAGGGAAG
* * * *
51435992 --T---AGGGTAGTTTGGCATGACAGTCCATTTCATCCTAATTTGAATGTTTATAGAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGT-CATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* *
51436052 CTTAATTTTGCATTCAATCAAATTTT---GGCAA-
65 CTTAATTTTGCATTCAATCAATTTTTGCAGGGAAG
* * ** *
51436083 --T-GC-----AGTTTGGCATGACAGTCCATTTAGTCTCAATTTGAATGCAGTT-T-GGCATGAC
1 TTTGGCTGGGTAGTTTGGCATGACAGT-CATTTCGTCCCAATTTGAATGC--TTATAGAAATGTC
* * * * * **
51436138 AGTC--CATTTAG--TCTCAATTTGAACTTTT--ATAGAA-
63 -CTCTTAATTTTGCAT-TCAA--TCAATTTTTGCAGGGAAG
* * ** * ** * * * * * * * ** **
51436172 -ATGCCCT-TTTAATTTTTCAT-TCAATCAAATTTTGGCAGGGCAGTTTGGAT--TGGTAG-TTT
1 TTTG-GCTGGGTAGTTTGGCATGACAGTC--ATTTCGTC---CCAATTTGAATGCTTATAGAAAT
** * * *
51436231 CGTCC-C--AATTTGAATGC-TT-ATAGAAATGTCTT-C--TGAAT
60 -GTCCTCTTAATTT---TGCATTCA-ATCAAT-TTTTGCAGGGAAG
* *** * ** * * ** * * **
51436269 TTTGCGTTCAATCAATTTTTTCAAGAAAGT-ATGGATGAGT---AGTTTTGCATGAC--AGTTCA
1 TTTG-GCTGGGT--AGTTTGGCATGACAGTCAT---TTCGTCCCA-ATTTGAATG-CTTA-TAGA
** * * ** * * ***
51436328 TTTGGTCCTAATTTGAATGCTTATTGAAATGTTCTCTTAATTTTGCATTCAATCATTTTTAG
57 AAT-GTCCT--CTT-AA---TT-TTG-CA--TTCAATCAATTTT---TGCAGGGA-----AG
* * * * *
51436390 CATGGTAGTTTGGCTGGGTAGTTCGGTATGACAGTTTATTTCGTCCCAATTTGAATGCCTATATA
1 --T--T--T--GGCTGGGTAGTTTGGCATGACAG-TCATTTCGTCCCAATTTGAATGCTTATAGA
* * *
51436455 AATGTCCTCTTAATTGTGTATT--A--AA----T-CA---AAT
57 AATGTCCTCTTAATTTTGCATTCAATCAATTTTTGCAGGGAAG
* * * * * * *
51436486 TTTGGCAGAGTAGTTTGGCATAACAGTCGATTTCATTCCAATTTAAATGCTAATAGAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTC-ATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * * ** * *
51436551 CTTAATTTTGGATTCAAGCAAATACTGTAGGGCAG
65 CTTAATTTTGCATTCAATCAATTTTTGCAGGGAAG
*** ** * *
51436586 TTTGGGAAGGTAGTTTGATATGACAGTCCATTTCGTCCCAAATTGAAATGCTTATAGAAATTTCC
1 TTTGGCTGGGTAGTTTGGCATGACAGT-CATTTCGTCCCAATTTG-AATGCTTATAGAAATGTCC
* * * * * **
51436651 TCTTGATTTTTCATTCAATAAAATTTTGGTAGGGCCG
64 TCTTAATTTTGCATTCAAT-CAATTTTTGCAGGGAAG
* * ** ** * *
51436688 TTTGGTTGTGTAGTTTGGCATGACAACCCATTTTTTTCCCAATTTGAATGCTTATAAAAATATCC
1 TTTGGCTGGGTAGTTTGGCATGAC-AGTCA-TTTCGTCCCAATTTGAATGCTTATAGAAATGTCC
* * * * *
51436753 TTTTATTTTTGCATTTAATCAATTTTGGTAGGGCAA-
64 TCTTAATTTTGCATTCAATCAATTTTTGCAGGG-AAG
* * *
51436789 TTT-GCTAGGGTAGTTTGGAATGACAGTCCATTTCGTCCTAATTTGAATGCTTATATAAATGTCC
1 TTTGGCT-GGGTAGTTTGGCATGACAGT-CATTTCGTCCCAATTTGAATGCTTATAGAAATGTCC
** * *
51436853 TCTTAA-AGTGCATTCAATCAAATTTTGGTAGGGCAA-
64 TCTTAATTTTGCATTCAATC-AATTTTTGCAGGG-AAG
* * * * *
51436889 TTTGGCTAGGTAGTTTGGCATGACAATCCATTTCATCTCAATTTGAATGCTTATAGAAATTTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGT-CATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* *
51436954 CTTAATTTTGCATTCAATCAATTTTAGCAGGGTAG
65 CTTAATTTTGCATTCAATCAATTTTTGCAGGGAAG
* * * * * * * * **
51436989 TTTAGC---CTA-------A-CA-ATTAATTTCCTTCCAATTTGAATGCTTAAAGAAATGTATTC
1 TTTGGCTGGGTAGTTTGGCATGACAGTCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTC
* * *
51437042 TTAATTTTGCATTCAATCTAATTTTGGTAGGGCAG
66 TTAATTTTGCATTCAATC-AATTTTTGCAGGGAAG
* *
51437077 TTTGGCTGGGTAGTTTGGCATTACAGTCCATTTCGTCCCAATTTGAATGCTTACAGAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGT-CATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* *
51437142 CTTAATTTTTCATTCAATCAAATTTTG--GCGG-A-
65 CTTAATTTTGCATTCAATCAATTTTTGCAG-GGAAG
* * * *
51437174 ----G-T---T-GTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAATAGAAATGTTCT
1 TTTGGCTGGGTAGTTTGGCATGACAGT-CATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * * **
51437230 CTTAATTTTGCATTTAAGCAAATATTTGCAGGGTGG
65 CTTAATTTTGCATTCAATC-AATTTTTGCAGGGAAG
* * * * * * * *
51437266 TTTGGCAGAGTAGTTTGACATGACAATCTACTTCATCCCAAATTGAATGCTTATAGTAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTC-ATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * *
51437331 CTTAATTTTGCATTCAATCAAATTTTGGTAGGGCAG
65 CTTAATTTTGCATTCAATC-AATTTTTGCAGGGAAG
* * * * * * * *
51437367 TTTGGTTGTGTAGTTTGGCATGACAGTTTATTTTGTCGCAATTTGAATCCTTATATAAATGTCAT
1 TTTGGCTGGGTAGTTTGGCATGACAG-TCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * * *
51437432 CTTATTTTTGCTTTCAATCAA-TTTTGTCAGAGTAG
65 CTTAATTTTGCATTCAATCAATTTTTG-CAGGGAAG
* * * * *
51437467 TTTAGCTGGGTAGTTTGGCTTGATAGTCCATTTTGTTCCAATTTGAATGCTTATA-AAATTGTCC
1 TTTGGCTGGGTAGTTTGGCATGACAGT-CATTTCGTCCCAATTTGAATGCTTATAGAAA-TGTCC
* * *
51437531 TCTT-ATATTTGCATTCAACCAAATTTTGGCAGGGCAG
64 TCTTAAT-TTTGCATTCAATC-AATTTTTGCAGGGAAG
* * * *
51437568 TTTGGCTGGTTAGTTTGGCATGATAATCGATTTCTTCCCAATTT
1 TTTGGCTGGGTAGTTTGGCATGACAGTC-ATTTCGTCCCAATTT
51437612 AGCACTTACA
Statistics
Matches: 2186, Mismatches: 476, Indels: 445
0.70 0.15 0.14
Matches are distributed among these distances:
85 1 0.00
86 5 0.00
87 198 0.09
88 259 0.12
89 13 0.01
90 10 0.00
91 5 0.00
92 8 0.00
93 1 0.00
94 36 0.02
95 47 0.02
96 28 0.01
97 22 0.01
98 12 0.01
99 126 0.06
100 606 0.28
101 644 0.29
102 78 0.04
103 13 0.01
104 2 0.00
105 1 0.00
106 2 0.00
107 2 0.00
109 2 0.00
110 3 0.00
111 5 0.00
112 2 0.00
113 1 0.00
114 1 0.00
116 4 0.00
118 1 0.00
119 2 0.00
120 2 0.00
121 1 0.00
123 3 0.00
124 2 0.00
125 4 0.00
126 14 0.01
127 12 0.01
128 7 0.00
129 1 0.00
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.40
Consensus pattern (99 bp):
TTTGGCTGGGTAGTTTGGCATGACAGTCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTC
TTAATTTTGCATTCAATCAATTTTTGCAGGGAAG
Found at i:51435270 original size:188 final size:188
Alignment explanation
Indices: 51434934--51435304 Score: 466
Period size: 188 Copynumber: 2.0 Consensus size: 188
51434924 AGTTTGGCTA
* * * * *
51434934 GGTAGTTTGGAATGACAGTTCATTTCTTCCCAATTTGAATGTTTATCGAAAATTTTTCTTAATTT
1 GGTAGTTTGGAATGACAGTTCATTTCGTCCCAATTTGAATGCTTATAGAAAATTTCTCTAAATTT
* * * *
51434999 TGCATTCAATCAAATTTTGGCAGGGAAATTTGGCTGGGAATTTTGGCATAACTGTCCATTTTGTC
66 TACATTCAATCAAATTTTGGCAAGGAAATTTGGCTGGGAATTTTGGCATAACAGTCCATTTCGTC
*
51435064 CCAATTTGAACTCTTATAGAAATGT-TCTCTTAGTTTTACATTCAATCAAATTTTGACTT
131 CCAATTTGAACTCTTATAGAAATGTCT-TCTTAATTTTACATTCAATC-AATTTTGACTT
* * *
51435123 GGTAGTTTGGCATGGCAG-TCTATTTCGTCCTAATTTGAATGCTTATAG-AAATTTCCTCTAAAT
1 GGTAGTTTGGAATGACAGTTC-ATTTCGTCCCAATTTGAATGCTTATAGAAAATTT-CTCTAAAT
* * * * *
51435186 TTTACGTTCAATCAAA-TTTGGCAAGGCAATTTGGCTGGGTAGTTTT-GCATGACAGTTCATTTC
64 TTTACATTCAATCAAATTTTGGCAAGGAAATTTGGCTGGG-AATTTTGGCATAACAGTCCATTTC
* *
51435249 GTCCCGATTTGAA-TGCTTATAGAAATGTCTTCTTAATTTTGCATTCAATCAATTTT
128 GTCCCAATTTGAACT-CTTATAGAAATGTCTTCTTAATTTTACATTCAATCAATTTT
51435305 AGAAAGGCAG
Statistics
Matches: 157, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
187 7 0.04
188 85 0.54
189 65 0.41
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (188 bp):
GGTAGTTTGGAATGACAGTTCATTTCGTCCCAATTTGAATGCTTATAGAAAATTTCTCTAAATTT
TACATTCAATCAAATTTTGGCAAGGAAATTTGGCTGGGAATTTTGGCATAACAGTCCATTTCGTC
CCAATTTGAACTCTTATAGAAATGTCTTCTTAATTTTACATTCAATCAATTTTGACTT
Found at i:51435490 original size:87 final size:87
Alignment explanation
Indices: 51435326--51435491 Score: 233
Period size: 87 Copynumber: 1.9 Consensus size: 87
51435316 TTGGCTGGGT
* * * *
51435326 AGTTTGGCATGACCGTCCATTTCGTCCAAATTTGAATGCTTATAGAAATGTCCTTTTAATTTTGC
1 AGTTTGCCATGACAGTCCATTTCGTCCAAATTTGAATGCTTATAGAAATGTCATCTTAATTTTGC
* *
51435391 ATTTAACCAAATTTGGTTGAGA
66 ATTCAACAAAATTTGGTTGAGA
* * * *
51435413 AGTTTGCCATGACAGTCTATTTCGTCCCAATTTGAATGTTTATGGAAATGTCATCTTAATTTTGC
1 AGTTTGCCATGACAGTCCATTTCGTCCAAATTTGAATGCTTATAGAAATGTCATCTTAATTTTGC
*
51435478 ATTCAATAAAATTT
66 ATTCAACAAAATTT
51435492 TGGAAGGGTA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
87 68 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (87 bp):
AGTTTGCCATGACAGTCCATTTCGTCCAAATTTGAATGCTTATAGAAATGTCATCTTAATTTTGC
ATTCAACAAAATTTGGTTGAGA
Found at i:51435513 original size:13 final size:13
Alignment explanation
Indices: 51435497--51435521 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51435487 AATTTTGGAA
51435497 GGGTAGTTTGGCT
1 GGGTAGTTTGGCT
51435510 GGGTAGTTTGGC
1 GGGTAGTTTGGC
51435522 ATGGCAGCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.48, T:0.36
Consensus pattern (13 bp):
GGGTAGTTTGGCT
Found at i:51435598 original size:389 final size:385
Alignment explanation
Indices: 51434625--51437590 Score: 1328
Period size: 389 Copynumber: 7.6 Consensus size: 385
51434615 TTGGCAGGAC
* * *
51434625 AATTTGGCT-AGGTAGTTTGGCATGAGAGTCCATTTCGTACCAATTTGAATGTTTATAGAAATGT
1 AATTTGGCTGA-GAAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGT
* * *
51434689 CCTCTTAATTTTGCATTCAATCAATTTTTGTAGGGAAGTTTGGCTGGGTAGTTTGGCATGACAGT
65 -CTCTTAATTTTGCATTCAAT-AAATTTTG-AGGG-AGTTTGGCTGGGTAGTTTGGCATGGCAGC
* * * *
51434754 CAGTTTCTTCC-CAATTTGAATGTTTATTGAAGTGTCCTCTTAATTTTCATTCAATCAAATTTTG
126 CA-TTTCGTCCTCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTCATTCAATCAAA-TTTG
* * * * * * *
51434818 GCAGGGAAATTTTGTTGGTAGTTTGGCATGACAGTCCATTTTGTACCAATTCGAATGCTTATAGA
189 GCAAGGAAATTTGGTGGGTAGTTTGGCATGACAGTTCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * *
51434883 AATGTCTTCTTAATTTCGCATTCGATCAATTTTTGCAGGGAAGTTTGGCTAGGTAGTTTGGAATG
254 AATGTCTTCTTAATTTTGCATTCAATCAATTTTAGAAAGGAAGTTTGGCTAGGTAGTTTGGAATG
* * * * * *
51434948 ACAGTTCATTTCTTCCCAATTTGAATGTTTATCGAAAATTTTTCTTAATTTTGCATTCAATCAAA
319 ACAGTCCATTTCGTCCAAATTTGAATGCTTATAGAAAATTCTTCTTAATTTTGCATT--AT-AAA
*
51435013 TTTTGGCAGGGA
381 ---T--C--GCA
* * * * * *
51435025 AATTTGGCTGGGAATTTTGGCATAACTGTCCATTTTGTCCCAATTTGAACT-CTTATAGAAATGT
1 AATTTGGCTGAGAAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAA-TGTTTATAGAAATG-
* * * *
51435089 TCTCTTAGTTTTACATTCAATCAAATTTT----GA------CTTGGTAGTTTGGCATGGCAGTCT
64 TCTCTTAATTTTGCATTCAAT-AAATTTTGAGGGAGTTTGGCTGGGTAGTTTGGCATGGCAG-CC
* * *
51435144 ATTTCGTCCT-AATTTGAATGCTTATAGAAATTTCCTCTAAATTTTACGTTCAATCAAATTTGGC
127 ATTTCGTCCTCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTT-CATTCAATCAAATTTGGC
* * *
51435208 AAGGCAATTTGGCTGGGTAGTTTTGCATGACAGTTCATTTCGTCCCGATTTGAATGCTTATAGAA
191 AAGGAAATTTGG-TGGGTAGTTTGGCATGACAGTTCATTTCGTCCCAATTTGAATGCTTATAGAA
* * *
51435273 ATGTCTTCTTAATTTTGCATTCAATCAATTTTAGAAAGGCAGTTTGGCTGGGTAGTTTGGCATGA
255 ATGTCTTCTTAATTTTGCATTCAATCAATTTTAGAAAGGAAGTTTGGCTAGGTAGTTTGGAATGA
*
51435338 CCGTCCATTTCGTCCAAATTTGAATGCTTATAG-AAATGTCCTT-TTAATTTTGCATT-T-AA-C
320 CAGTCCATTTCGTCCAAATTTGAATGCTTATAGAAAAT-T-CTTCTTAATTTTGCATTATAAATC
51435398 -CA
383 GCA
* * * *
51435400 AATTTGGTTGAGAAGTTTGCCATGACAGTCTATTTCGTCCCAATTTGAATGTTTATGGAAATGTC
1 AATTTGGCTGAGAAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTC
51435465 ATCTTAATTTTGCATTCAATAAAATTTTGGAAGGGTAGTTTGGCTGGGTAGTTTGGCATGGCAGC
66 -TCTTAATTTTGCATTCAAT-AAATTTT-G-AGGG-AGTTTGGCTGGGTAGTTTGGCATGGCAG-
* * * * *
51435530 CCAATTC-ACCTCAATTTGAACT-CTTATAGAAATGCCCTCTTAATTTTGCATTTAATAAAATCT
125 CCATTTCGTCCTCAATTTGAA-TGCTTATAGAAATGTCCTCTTAATTTT-CATTCAATCAAAT-T
* * * * * * *
51435593 TGGCAAAGTAGTTTGGTTGGGTAGTTTGGGATAACAGTTTATTTCGTCCTAATTTGAATGCTTAT
187 TGGCAAGGAAATTTGG-TGGGTAGTTTGGCATGACAGTTCATTTCGTCCCAATTTGAATGCTTAT
* * ** **
51435658 AAAAATGTCTTCTAAATTTTGCATTCAATCAATTTT-GGCAGGATAGTTTGATTAGGTAGTTT-G
251 AGAAATGTCTTCTTAATTTTGCATTCAATCAATTTTAGAAAGGA-AGTTTGGCTAGGTAGTTTGG
* * * * *
51435721 ACATGAGAGTCCATTTCATCCCAA--TG--T--TTATA-AAAATTTCCTCTTATTTTTGCATTCA
315 A-ATGACAGTCCATTTCGTCCAAATTTGAATGCTTATAGAAAA-TTCTTCTTAATTTTGCATT--
*
51435779 ATCAAATTCTTCTAGA
376 AT-AAA-TC-GC---A
* * * * * * *
51435795 GTAATTTGGCGGAGTAGTTTGGCATAATAGTCTATTTCGTCCCAATTTGAACT-CTTATAAAAAT
1 --AATTTGGCTGAGAAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAA-TGTTTATAGAAAT
* * * * *
51435859 GTTCTCTTAATTTTGCTTTTAATAAAAATTTGTCAGGGCAGTTTGGCTTGGTAGTTTGGCATGAC
63 G-TCTCTTAATTTTGCATTCAAT--AAATTT-TGAGGG-AGTTTGGCTGGGTAGTTTGGCATGGC
* * * *
51435924 AGTCTATTTCAT-CTCAATTTGAATGCCTATTGAAATGTCCTCTTAATTTTGCATTCAATC-AA-
123 AG-CCATTTCGTCCTCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTT-CATTCAATCAAAT
* * * *
51435986 TT----------TTT-GTAGGGTAGTTTGGCATGACAGTCCATTTCATCCTAATTTGAATGTTTA
186 TTGGCAAGGAAATTTGGT-GGGTAGTTTGGCATGACAGTTCATTTCGTCCCAATTTGAATGCTTA
* *
51436040 TAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT-G---GCAA---T-GC-----AGTTTG
250 TAGAAATGTCTTCTTAATTTTGCATTCAATC-AATTTTAGAAAGGAAGTTTGGCTAGGTAGTTTG
* * * *
51436092 GCATGACAGTCCATTTAGTCTC-AATTTGAATGCAGTT-TGGCATGACAGTCCATT-TAGTCTCA
314 GAATGACAGTCCATTTCGTC-CAAATTTGAATGC--TTAT---A-GA-A---AATTCT--TCTTA
* * *
51436154 A-TTTGAACTTTTATAGAAATGCCCTTTT
366 ATTTTG--C-ATTAT--AAAT-CGC---A
** * * * * * **
51436182 AATTTTTCATTCAATCAAATTTTGGCAGGGCAGTTTGGATTGGTAGTTTCGTCCCAATTTGAATG
1 AATTTGGC--T-GA--GAAGTTTGGCATGACA-----G--T-CCA-TTTCGTCCCAATTTGAATG
* * * * * ** * * *
51436247 CTTATAGAAATGTCTTCTGAATTTTGCGTTCAATCAATTTTTTCAAGAAAGTATGGATGAGTAGT
52 TTTATAGAAATGTC-TCTTAATTTTGCATTCAAT-AA-ATTTT-GAGGGAGTTTGGCTGGGTAGT
* * * * * *
51436312 TTTGCATGACAGTTCATTTGGTCCT-AATTTGAATGCTTATTGAAATGTTCTCTTAATTTTGCAT
113 TTGGCATGGCAG-CCATTTCGTCCTCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTT-CAT
** * * * * * * *
51436376 TCAATCATTTTTAGCATGGTAGTTTGGCTGGGTAGTTCGGTATGACAGTTTATTTCGTCCCAATT
176 TCAATCAAATTTGGCAAGGAAATTTGG-TGGGTAGTTTGGCATGACAGTTCATTTCGTCCCAATT
* * * * * * *
51436441 TGAATGCCTATATAAATGTCCTCTTAATTGTGTATT--A--AA---T---CA--AATTTTGGC-A
240 TGAATGCTTATAGAAATGTCTTCTTAATTTTGCATTCAATCAATTTTAGAAAGGAAGTTTGGCTA
* * * * * * *
51436493 GAGTAGTTTGGCATAACAGTCGATTTCATTCC-AATTTAAATGCTAATAG-AAATGTCCTCTTAA
305 G-GTAGTTTGGAATGACAGTCCATTTC-GTCCAAATTTGAATGCTTATAGAAAAT-TCTTCTTAA
* * *
51436556 TTTTGGATTCAAGCAAATACTGTA
367 TTTTGCATT--A-TAAAT-C-GCA
* * ** * *
51436580 GGGCAGTTTGG--GAAGGTAGTTTGATATGACAGTCCATTTCGTCCCAAATTGAAATGCTTATAG
1 ----AATTTGGCTG-A-GAAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG-AATGTTTATAG
* * * * * *
51436643 AAATTTCCTCTTGATTTTTCATTCAATAAAATTTTGGTAGGGCCGTTTGGTTGTGTAGTTTGGCA
59 AAATGT-CTCTTAATTTTGCATTCAAT-AAATTTT-G-AGGG-AGTTTGGCTGGGTAGTTTGGCA
* * ** * * * * *
51436708 TGACAACCCATTTTTTTCC-CAATTTGAATGCTTATAAAAATATCCTTTTATTTTTGCATTTAAT
119 TGGC-AGCCA-TTTCGTCCTCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTT-CATTCAAT
* * * * * * * *
51436772 CAATTTTGGTAGGGCAATTTGCTAGGGTAGTTTGGAATGACAGTCCATTTCGTCCTAATTTGAAT
181 CAAATTTGGCAAGGAAATTTGGT-GGGTAGTTTGGCATGACAGTTCATTTCGTCCCAATTTGAAT
* * ** * * *
51436837 GCTTATATAAATGTCCTCTTAA-AGTGCATTCAATCAAATTTTGGTAGGGCAA-TTTGGCTAGGT
245 GCTTATAGAAATGTCTTCTTAATTTTGCATTCAATC-AATTTTAGAAAGG-AAGTTTGGCTAGGT
* * * * *
51436900 AGTTTGGCATGACAATCCATTTCATCTC-AATTTGAATGCTTATAGAAATTTCCTCTTAATTTTG
308 AGTTTGGAATGACAGTCCATTTCGTC-CAAATTTGAATGCTTATAGAAAATTCTTCTTAATTTTG
*
51436964 CA-T-TCAAT--CA
372 CATTATAAATCGCA
* * * * * * * * * ** * * * *
51436974 ATTTTAGCAGGGTAGTTTAGCCTAACAATTAATTTCCTTCCAATTTGAATGCTTAAAGAAATGTA
1 AATTTGGCTGAGAAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGT-
* * **
51437039 TTCTTAATTTTGCATTCAATCTAATTTTGGTAGGGCAGTTTGGCTGGGTAGTTTGGCATTACAGT
65 CTCTTAATTTTGCATTCAAT-AAATTTT-G-AGGG-AGTTTGGCTGGGTAGTTTGGCATGGCAG-
*
51437104 CCATTTCGTCC-CAATTTGAATGCTTACAGAAATGTCCTCTTAATTTTTCATTCAATCAAATTTT
125 CCATTTCGTCCTCAATTTGAATGCTTATAGAAATGTCCTCTTAA-TTTTCATTCAATCAAA-TTT
* * * *
51437168 GGC--GG--A----GT---T-GTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAATAG
188 GGCAAGGAAATTTGGTGGGTAGTTTGGCATGACAGTTCATTTCGTCCCAATTTGAATGCTTATAG
* * * * **
51437221 AAATGT-TCTCTTAATTTTGCATTTAAGCAAATATTT-GCAGGGTGGTTTGGC-AGAGTAGTTT-
253 AAATGTCT-TCTTAATTTTGCATTCAATC-AAT-TTTAGAAAGGAAGTTTGGCTAG-GTAGTTTG
* * * * * *
51437282 GACATGACAATCTACTTCATCCCAAA-TTGAATGCTTATAG-TAATGTCCTCTTAATTTTGCATT
314 GA-ATGACAGTCCATTTCGT-CCAAATTTGAATGCTTATAGAAAAT-TCTTCTTAATTTTGCATT
* *
51437345 CAATCAAATTTTGGTA
376 --AT-AAA---TCGCA
* * * * ** * * ** *
51437361 GGGCAGTTTGGTTGTGTAGTTTGGCATGACAGTTTATTTTGTCGCAATTTGAATCCTTATATAAA
1 ----AATTTGGCTGAGAAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAA
* * * * * * **
51437426 TGTCATCTTATTTTTGCTTTCAATCAATTTTGTCAGAGTAGTTTAGCTGGGTAGTTTGGCTTGAT
62 TGTC-TCTTAATTTTGCATTCAATAAATTTTG--AG-GGAGTTTGGCTGGGTAGTTTGGCATGGC
* * * *
51437491 AGTCCATTTTGTTC-CAATTTGAATGCTTATA-AAATTGTCCTCTTATATTTGCATTCAACCAAA
123 AG-CCATTTCGTCCTCAATTTGAATGCTTATAGAAA-TGTCCTCTTA-ATTTTCATTCAATCAAA
* * * *
51437554 TTTTGGCAGGGCAGTTTGGCTGGTTAGTTTGGCATGA
185 -TTTGGCAAGGAAATTTGG-TGGGTAGTTTGGCATGA
51437591 TAATCGATTT
Statistics
Matches: 1985, Mismatches: 372, Indels: 415
0.72 0.13 0.15
Matches are distributed among these distances:
371 22 0.01
372 2 0.00
373 2 0.00
374 3 0.00
375 77 0.04
376 55 0.03
377 79 0.04
378 9 0.00
379 2 0.00
380 1 0.00
381 6 0.00
382 6 0.00
383 91 0.05
384 14 0.01
385 9 0.00
386 8 0.00
387 18 0.01
388 215 0.11
389 401 0.20
390 163 0.08
391 182 0.09
392 6 0.00
394 4 0.00
395 5 0.00
396 3 0.00
397 155 0.08
398 96 0.05
399 55 0.03
400 83 0.04
401 10 0.01
402 15 0.01
403 71 0.04
404 8 0.00
405 1 0.00
406 5 0.00
407 1 0.00
409 2 0.00
410 4 0.00
411 93 0.05
412 3 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (385 bp):
AATTTGGCTGAGAAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTC
TCTTAATTTTGCATTCAATAAATTTTGAGGGAGTTTGGCTGGGTAGTTTGGCATGGCAGCCATTT
CGTCCTCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTCATTCAATCAAATTTGGCAAGGA
AATTTGGTGGGTAGTTTGGCATGACAGTTCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCT
TCTTAATTTTGCATTCAATCAATTTTAGAAAGGAAGTTTGGCTAGGTAGTTTGGAATGACAGTCC
ATTTCGTCCAAATTTGAATGCTTATAGAAAATTCTTCTTAATTTTGCATTATAAATCGCA
Found at i:51436054 original size:87 final size:88
Alignment explanation
Indices: 51435908--51436124 Score: 314
Period size: 87 Copynumber: 2.5 Consensus size: 88
51435898 AGTTTGGCTT
* *
51435908 GGTAGTTTGGCATGACAGTCTATTTCATCTCAATTTGAATGCCTATTGAAATGTCCTCTTAATTT
1 GGTAGTTTGGCATGACAGTCCATTTCATCTCAATTTGAATGCCTATAGAAATGTCCTCTTAATTT
* * *
51435973 TGCATTCAATC-AATTTTTGTAG
66 TGCATTCAATCAAATTTTGGCAA
**
51435995 GGTAGTTTGGCATGACAGTCCATTTCATC-CTAATTTGAATGTTTATAGAAATGTCCTCTTAATT
1 GGTAGTTTGGCATGACAGTCCATTTCATCTC-AATTTGAATGCCTATAGAAATGTCCTCTTAATT
51436059 TTGCATTCAATCAAATTTTGGCAA
65 TTGCATTCAATCAAATTTTGGCAA
* *
51436083 TGCAGTTTGGCATGACAGTCCATTT-AGTCTCAATTTGAATGC
1 GGTAGTTTGGCATGACAGTCCATTTCA-TCTCAATTTGAATGC
51436125 AGTTTGGCAT
Statistics
Matches: 116, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
86 1 0.01
87 71 0.61
88 43 0.37
89 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (88 bp):
GGTAGTTTGGCATGACAGTCCATTTCATCTCAATTTGAATGCCTATAGAAATGTCCTCTTAATTT
TGCATTCAATCAAATTTTGGCAA
Found at i:51436129 original size:39 final size:39
Alignment explanation
Indices: 51436081--51436160 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
51436071 AAATTTTGGC
51436081 AATGCAGTTTGGCATGACAGTCCATTTAGTCTCAATTTG
1 AATGCAGTTTGGCATGACAGTCCATTTAGTCTCAATTTG
51436120 AATGCAGTTTGGCATGACAGTCCATTTAGTCTCAATTTG
1 AATGCAGTTTGGCATGACAGTCCATTTAGTCTCAATTTG
51436159 AA
1 AA
51436161 CTTTTATAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (39 bp):
AATGCAGTTTGGCATGACAGTCCATTTAGTCTCAATTTG
Found at i:51437163 original size:679 final size:678
Alignment explanation
Indices: 51436337--51437611 Score: 1735
Period size: 679 Copynumber: 1.9 Consensus size: 678
51436327 ATTTGGTCCT
** * * *
51436337 AATTTGAATGCTTATTGAAATGTTCTCTTAATTTTGCATTCAATCATTTTTAGCATGGTAGTTTG
1 AATTTGAATGCTTAAAGAAATGTTCTCTTAATTTTGCATTCAATCAATTTTAGCAGGGCAGTTTG
* ** * *
51436402 GCTGGGTAGTTCGGTATGACAGTTTATTTCGTCCCAATTTGAATGCCTATATAAATGTCCTCTTA
66 GCTGGGTAGTTCGGCATGACAGTCCATTTCGTCCCAATTTGAATGCCTACAGAAATGTCCTCTTA
* * *
51436467 ATTGTGTATTAAATCAAATTTTGGCAGAGTAGTTTGGCATAACAGTCGATTTCATTCCAATTTAA
131 ATTGTGTATTAAATCAAATTTTGGCAGAGTAGTTTGGCATAACAATCCATTTCATCCCAATTTAA
* *
51436532 ATGCTAATAGAAATGTCCTCTTAATTTTGGATTCAAGCAAATA-CTGTAGGGCAGTTTGGGAAG-
196 ATGCTAATAGAAATGTCCTCTTAATTTTGCATTCAAGCAAATATCTGCAGGGCAGTTT-GGAAGA
* * * * * *
51436595 GTAGTTTGATATGACAGTCCATTTCGTCCCAAATTGAAATGCTTATAGAAATTTCCTCTTGATTT
260 GTAGTTTGACATGACAATCCACTTCATCCCAAATTG-AATGCTTATAGAAATGTCCTCTTAATTT
* * *
51436660 TTCATTCAATAAAATTTTGGTAGGGCCGTTTGGTTGTGTAGTTTGGCATGACAACCCATTTTTTT
324 TGCATTCAATAAAATTTTGGTAGGGCAGTTTGGTTGTGTAGTTTGGCATGACAACCCA-TTTTGT
* * * *
51436725 CCCAATTTGAATGCTTATAAAAATATCCTTTTATTTTTGCATTT-AATCAATTTTGGT-AGGGCA
388 CCCAATTTGAATCCTTATAAAAATATCATCTTATTTTTGC-TTTCAATCAATTTT-GTCAGAGCA
51436788 ATTT-GCTAGGGTAGTTTGGAATGACAGTCCATTTCG-TCCTAATTTGAATGCTTATATAAA-TG
451 ATTTAGCT-GGGTAGTTTGGAATGACAGTCCATTTCGTTCC-AATTTGAATGCTTATA-AAATTG
* *
51436850 TCCTCTTA-AAGTGCATTCAATCAAATTTTGGTAGGGCAATTTGGCTAGG-TAGTTTGGCATGAC
513 TCCTCTTATAAGTGCATTCAACCAAATTTTGGCAGGGCAATTTGGCT-GGTTAGTTTGGCATGAC
*
51436913 AATCCATTTCATCTCAATTTGAATGCTTATAGAAATTTCCTCTTAATTTTGCATTCAATCAATTT
577 AATCCATTTCATCCCAATTTGAATGCTTATAGAAATTTCCTCTTAATTTTGCATTCAATCAATTT
51436978 TAGCAGGGTAGTTTAGCCTAACAATTAATTTCCTTCC
642 TAGCAGGGTAGTTTAGCCTAACAATTAATTTCCTTCC
* *
51437015 AATTTGAATGCTTAAAGAAATGTAT-TCTTAATTTTGCATTCAATCTAATTTTGGTAGGGCAGTT
1 AATTTGAATGCTTAAAGAAATGT-TCTCTTAATTTTGCATTCAATC-AATTTTAGCAGGGCAGTT
* * *
51437079 TGGCTGGGTAGTTTGGCATTACAGTCCATTTCGTCCCAATTTGAATGCTTACAGAAATGTCCTCT
64 TGGCTGGGTAGTTCGGCATGACAGTCCATTTCGTCCCAATTTGAATGCCTACAGAAATGTCCTCT
* * * * * *
51437144 TAATT-TTTCATTCAATCAAATTTTGGCGGAGTTGTTTGGCATGACAATCCATTTCGTCCCAATT
129 TAATTGTGT-ATTAAATCAAATTTTGGCAGAGTAGTTTGGCATAACAATCCATTTCATCCCAATT
* * * ** *
51437208 TAAATGCTAATAGAAATGTTCTCTTAATTTTGCATTTAAGCAAATATTTGCAGGGTGGTTTGGCA
193 TAAATGCTAATAGAAATGTCCTCTTAATTTTGCATTCAAGCAAATATCTGCAGGGCAGTTTGGAA
* *
51437273 GAGTAGTTTGACATGACAATCTACTTCATCCCAAATTGAATGCTTATAGTAATGTCCTCTTAATT
258 GAGTAGTTTGACATGACAATCCACTTCATCCCAAATTGAATGCTTATAGAAATGTCCTCTTAATT
* ****
51437338 TTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGTTGTGTAGTTTGGCATGACAGTTTATTTTGT
323 TTGCATTCAATAAAATTTTGGTAGGGCAGTTTGGTTGTGTAGTTTGGCATGACAACCCATTTTGT
* * * * *
51437403 CGCAATTTGAATCCTTATATAAATGTCATCTTATTTTTGCTTTCAATCAATTTTGTCAGAGTAGT
388 CCCAATTTGAATCCTTATAAAAATATCATCTTATTTTTGCTTTCAATCAATTTTGTCAGAGCAAT
** * *
51437468 TTAGCTGGGTAGTTTGGCTTGATAGTCCATTTTGTTCCAATTTGAATGCTTATAAAATTGTCCTC
453 TTAGCTGGGTAGTTTGGAATGACAGTCCATTTCGTTCCAATTTGAATGCTTATAAAATTGTCCTC
** * * *
51437533 TTATATTTGCATTCAACCAAATTTTGGCAGGGCAGTTTGGCTGGTTAGTTTGGCATGATAATCGA
518 TTATAAGTGCATTCAACCAAATTTTGGCAGGGCAATTTGGCTGGTTAGTTTGGCATGACAATCCA
*
51437598 TTTCTTCCCAATTT
583 TTTCATCCCAATTT
51437612 AGCACTTACA
Statistics
Matches: 515, Mismatches: 70, Indels: 23
0.85 0.12 0.04
Matches are distributed among these distances:
677 8 0.02
678 151 0.29
679 315 0.61
680 41 0.08
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (678 bp):
AATTTGAATGCTTAAAGAAATGTTCTCTTAATTTTGCATTCAATCAATTTTAGCAGGGCAGTTTG
GCTGGGTAGTTCGGCATGACAGTCCATTTCGTCCCAATTTGAATGCCTACAGAAATGTCCTCTTA
ATTGTGTATTAAATCAAATTTTGGCAGAGTAGTTTGGCATAACAATCCATTTCATCCCAATTTAA
ATGCTAATAGAAATGTCCTCTTAATTTTGCATTCAAGCAAATATCTGCAGGGCAGTTTGGAAGAG
TAGTTTGACATGACAATCCACTTCATCCCAAATTGAATGCTTATAGAAATGTCCTCTTAATTTTG
CATTCAATAAAATTTTGGTAGGGCAGTTTGGTTGTGTAGTTTGGCATGACAACCCATTTTGTCCC
AATTTGAATCCTTATAAAAATATCATCTTATTTTTGCTTTCAATCAATTTTGTCAGAGCAATTTA
GCTGGGTAGTTTGGAATGACAGTCCATTTCGTTCCAATTTGAATGCTTATAAAATTGTCCTCTTA
TAAGTGCATTCAACCAAATTTTGGCAGGGCAATTTGGCTGGTTAGTTTGGCATGACAATCCATTT
CATCCCAATTTGAATGCTTATAGAAATTTCCTCTTAATTTTGCATTCAATCAATTTTAGCAGGGT
AGTTTAGCCTAACAATTAATTTCCTTCC
Found at i:51437269 original size:88 final size:87
Alignment explanation
Indices: 51437077--51437272 Score: 250
Period size: 88 Copynumber: 2.2 Consensus size: 87
51437067 GGTAGGGCAG
* * * *
51437077 TTTGGCTGGGTAGTTTGGCATTACAGTCCATTTCGTCCCAATTTGAATGCTTACAGAAATGTCCT
1 TTTGGC-GGGTAGTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAACAGAAATGTCCT
* *
51437142 CTTAATTTTTCATTCAATCAAAT
65 CTTAATTTTGCATTCAAGCAAAT
* * *
51437165 TTTGGCGGAGTTGTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAATAGAAATGTTCT
1 TTTGGCGG-GTAGTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAACAGAAATGTCCT
*
51437230 CTTAATTTTGCATTTAAGCAAAT
65 CTTAATTTTGCATTCAAGCAAAT
*
51437253 ATTT-GCAGGGTGGTTTGGCA
1 -TTTGGC-GGGTAGTTTGGCA
51437273 GAGTAGTTTG
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
87 2 0.02
88 87 0.93
89 5 0.05
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.39
Consensus pattern (87 bp):
TTTGGCGGGTAGTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAACAGAAATGTCCTC
TTAATTTTGCATTCAAGCAAAT
Found at i:51437314 original size:189 final size:188
Alignment explanation
Indices: 51436795--51437573 Score: 716
Period size: 189 Copynumber: 4.1 Consensus size: 188
51436785 GCAATTTGCT
* * * * * *
51436795 AGGGTAGTTTGGAATGACAGTCCATTTCGTCCTAATTTGAATGCTTATATAAATGTCCTCTTAA-
1 AGGGTAGTTTGGCATGACAATCCATTTCGTCCCAATTTGAATGCTAATAGAAATGTTCTCTTAAT
** *
51436859 AGTGCATTCAATCAAATTTTGGTAGGGCAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTCA
66 TTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGC-AGGTAGTTTGGCATGACAATCCATTTCA
* * *
51436924 TCTCAATTTGAATGCTTATAGAAATTTCCTCTTAATTTTGCATTCAATC-AATTTTAGC
130 TCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGC
* * * ** * *
51436982 AGGGTAGTTTAGCCTAACAATTAATTTCCTTCCAATTTGAATGCTTAA-AGAAATGTAT-TCTTA
1 AGGGTAGTTTGGCATGACAATCCATTTCGTCCCAATTTGAATGC-TAATAGAAATGT-TCTCTTA
* * * *
51437045 ATTTTGCATTCAATCTAATTTTGGTAGGGCAGTTTGGCTGGGTAGTTTGGCATTACAGTCCATTT
64 ATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGC-AGGTAGTTTGGCATGACAATCCATTT
* * *
51437110 CGTCCCAATTTGAATGCTTACAGAAATGTCCTCTTAATTTTTCATTCAATCAAATTTTGGC
128 CATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGC
* *
51437171 -GGAGTTGTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAATAGAAATGTTCTCTTAA
1 AGG-GTAGTTTGGCATGACAATCCATTTCGTCCCAATTTGAATGCTAATAGAAATGTTCTCTTAA
* * * ** * * *
51437235 TTTTGCATTTAAGCAAATATTT-GCAGGGTGGTTTGGCAGAGTAGTTTGACATGACAATCTACTT
65 TTTTGCATTCAATCAAAT-TTTGGTAGGGCAGTTTGGCAG-GTAGTTTGGCATGACAATCCATTT
* *
51437299 CATCCCAAATTGAATGCTTATAGTAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGTAGGG
128 CATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAA-TTT--T--GG
51437364 C
188 C
* ** * * * * *
51437365 AGTTTGGTTGTGTAGTTTGGCATGACAGTTTATTTTGTCGCAATTTGAATCCTTATATAAATG-T
1 A-----G--G-GTAGTTTGGCATGACAATCCATTTCGTCCCAATTTGAATGCTAATAGAAATGTT
* * * * * * * *
51437429 CATCTTATTTTTGCTTTCAATC-AATTTT-GTCAGAGTAGTTTAGCTGGGTAGTTTGGCTTGATA
58 C-TCTTAATTTTGCATTCAATCAAATTTTGGT-AGGGCAGTTTGGC-AGGTAGTTTGGCATGACA
* ** * *
51437492 GTCCATTTTGTTCCAATTTGAATGCTTATA-AAATTGTCCTCTT-ATATTTGCATTCAACCAAAT
120 ATCCATTTCATCCCAATTTGAATGCTTATAGAAA-TGTCCTCTTAAT-TTTGCATTCAATCAAAT
51437555 TTTGGC
183 TTTGGC
*
51437561 AGGGCAGTTTGGC
1 AGGGTAGTTTGGC
51437574 TGGTTAGTTT
Statistics
Matches: 480, Mismatches: 85, Indels: 53
0.78 0.14 0.09
Matches are distributed among these distances:
187 47 0.10
188 120 0.25
189 150 0.31
190 6 0.01
191 1 0.00
192 1 0.00
194 3 0.01
196 4 0.01
198 1 0.00
200 12 0.03
201 75 0.16
202 60 0.12
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.40
Consensus pattern (188 bp):
AGGGTAGTTTGGCATGACAATCCATTTCGTCCCAATTTGAATGCTAATAGAAATGTTCTCTTAAT
TTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCAGGTAGTTTGGCATGACAATCCATTTCAT
CCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGC
Found at i:51437544 original size:491 final size:481
Alignment explanation
Indices: 51436125--51437611 Score: 1288
Period size: 491 Copynumber: 3.1 Consensus size: 481
51436115 ATTTGAATGC
* * * * *
51436125 AGTTTGGCATGACAGTCCATTTAGTCTCAATTTGAACT-TTTATAGAAATGCCCTTTTAATTTTT
1 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAA-TGCTTATAGAAATGTCCTCTTAATTTTT
* ** *
51436189 CATTCAATCAAATTTTGGCAGGGCAGTTTGG-ATTG---GT--AGTTTCGTCCCAATTTGAATGC
65 CATTCAATCAAATTTTGGCTGGGTTGTTTGGCA-TGACAATCCAGTTTCGTCCCAATTTGAATGC
* * * * * * *
51436248 TTATAGAAATG-TCTTCTGAATTTTGCGTTCAATCAATTTTTTCAAGAAAGTATGG-ATGAGTAG
129 TTATAGAAATGTTC-TCTTAATTTTGCATTTAATCAA-TTTTGCAGGGAAGTTTGGCA-GAGTAG
* * * *
51436311 TTTTG-CATGACAGT-TCATTTGGTCCTAATTTGAATGCTTATTGAAATGTTCTCTTAATTTTGC
191 -TTTGACATGACAGTCT-ATTTCGTCCTAATTTGAATGCTTATAGTAATGTCCTCTTAATTTTGC
* * * * * * * *
51436374 ATTCAATC-ATTTTTAGCATGGTAGTTTGGCTGGGTAGTTCGGTATGACAGTTTATTTCGTCCCA
254 ATTCAATCAAATTTTGGTAGGGCAGTTTGG-TTGGTAGTTTGGCATGACAGTTTATTTCGTCCCA
* * * *
51436438 ATTTGAATGCC-TATATAAATGTCCTCTTAATTGTG-TATTAAATCAAATTT-T--GGCAG---A
318 ATTTGAAT-CCTTATATAAATGTCCTCTTAATTTTGCT-TTCAATCAATTTTGTCAGGTAGTTTA
* * *
51436495 --GTAGTTTGGCATAACAGTCGATTTCATTCCAATTTAAATGCTAATAGAAATGTCCTCTTAATT
381 GCGTAGTTTGGC-T-A-AGTCAATTTCATTCCAATTTGAATGCTTATA-AAATGTCCTCTTAATT
* * ** ***
51436558 TTGGATTCAAGCAAATACT-GTAGGGCAGTTTGGGAAGGT
442 TTGCATTCAACCAAATTTTGGTAGGGCAGTTTGGCTGGGT
** * * *
51436597 AGTTTGATATGACAGTCCATTTCGTCCCAAATTGAAATGCTTATAGAAATTTCCTCTTGATTTTT
1 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTG-AATGCTTATAGAAATGTCCTCTTAATTTTT
* * * **
51436662 CATTCAATAAAATTTTGGTAGGGCCGTTTGGTTGTGTAGTTTGGCATGACAACCCATTTTTTTCC
65 CATTCAATCAAA-TTT--T--GG-C---TGG--GT-T-GTTTGGCATGACAATCCAGTTTCGTCC
* * * * * *
51436727 CAATTTGAATGCTTATAAAAATATCCTTTTATTTTTGCATTTAATCAATTTTGGTAGGGCAA-TT
117 CAATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTTAATCAATTTT-GCAGGG-AAGTT
* *
51436791 T-GCTAGGGTAGTTTGGA-ATGACAGTCCATTTCGTCCTAATTTGAATGCTTATA-TAAATGTCC
180 TGGC-AGAGTAGTTT-GACATGACAGTCTATTTCGTCCTAATTTGAATGCTTATAGT-AATGTCC
** * * * *
51436853 TCTTAA-AGTGCATTCAATCAAATTTTGGTAGGGCAATTTGGCTAGGTAGTTTGGCATGACAATC
242 TCTTAATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGG-TTGGTAGTTTGGCATGACAGTT
* * * * * * *
51436917 CATTTCATCTCAATTTGAATGCTTATAGAAATTTCCTCTTAATTTTGCATTCAATCAATTTTAG-
306 TATTTCGTCCCAATTTGAATCCTTATATAAATGTCCTCTTAATTTTGCTTTCAATCAATTTT-GT
* * * * * *
51436981 CAGGGTAGTTTAGCCTA-----AC-AA-TTAATTTCCTTCCAATTTGAATGCTTAAAGAAATGTA
370 CA-GGTAGTTTAGCGTAGTTTGGCTAAGTCAATTTCATTCCAATTTGAATGCTTATA-AAATGTC
* * *
51437039 TTCTTAATTTTGCATTCAATCTAATTTTGGTAGGGCAGTTTGGCTGGGT
433 CTCTTAATTTTGCATTCAACCAAATTTTGGTAGGGCAGTTTGGCTGGGT
* *
51437088 AGTTTGGCATTACAGTCCATTTCGTCCCAATTTGAATGCTTACAGAAATGTCCTCTTAATTTTTC
1 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTTC
*
51437153 ATTCAATCAAATTTTGGC-GGAGTTGTTTGGCATGACAATCCA-TTTCGTCCCAATTTAAATGCT
66 ATTCAATCAAATTTTGGCTGG-GTTGTTTGGCATGACAATCCAGTTTCGTCCCAATTTGAATGCT
* * **
51437216 AATAGAAATGTTCTCTTAATTTTGCATTTAAGCAAATATTTGCAGGGTGGTTTGGCAGAGTAGTT
130 TATAGAAATGTTCTCTTAATTTTGCATTTAATC-AAT-TTTGCAGGGAAGTTTGGCAGAGTAGTT
* * * * *
51437281 TGACATGACAATCTACTTCATCCCAAATTGAATGCTTATAGTAATGTCCTCTTAATTTTGCATTC
193 TGACATGACAGTCTATTTCGTCCTAATTTGAATGCTTATAGTAATGTCCTCTTAATTTTGCATTC
* *
51437346 AATCAAATTTTGGTAGGGCAGTTTGGTTGTGTAGTTTGGCATGACAGTTTATTTTGTCGCAATTT
258 AATCAAATTTTGGTAGGGCAGTTTGGTTG-GTAGTTTGGCATGACAGTTTATTTCGTCCCAATTT
* *
51437411 GAATCCTTATATAAATGTCATCTTATTTTTGCTTTCAATCAATTTTGTCAGAGTAGTTTAGCTGG
322 GAATCCTTATATAAATGTCCTCTTAATTTTGCTTTCAATCAATTTTGTCAG-GTAGTTTAGC---
* **
51437476 GTAGTTTGGCTTGATAGTCCATTTTGTTCCAATTTGAATGCTTATAAAATTGTCCTCTT-ATATT
383 GTAGTTTGGC-T-A-AGTCAATTTCATTCCAATTTGAATGCTTATAAAA-TGTCCTCTTAAT-TT
* *
51437540 TGCATTCAACCAAATTTTGGCAGGGCAGTTTGGCTGGTT
443 TGCATTCAACCAAATTTTGGTAGGGCAGTTTGGCTGGGT
* * * *
51437579 AGTTTGGCATGATAATCGATTTCTTCCCAATTT
1 AGTTTGGCATGACAGTCCATTTCGTCCCAATTT
51437612 AGCACTTACA
Statistics
Matches: 802, Mismatches: 144, Indels: 119
0.75 0.14 0.11
Matches are distributed among these distances:
472 30 0.04
473 34 0.04
474 3 0.00
476 47 0.06
477 84 0.10
478 122 0.15
479 3 0.00
480 2 0.00
481 2 0.00
482 2 0.00
484 2 0.00
485 2 0.00
486 9 0.01
487 2 0.00
489 4 0.00
490 116 0.14
491 325 0.41
492 5 0.01
495 5 0.01
498 1 0.00
500 2 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (481 bp):
AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTTC
ATTCAATCAAATTTTGGCTGGGTTGTTTGGCATGACAATCCAGTTTCGTCCCAATTTGAATGCTT
ATAGAAATGTTCTCTTAATTTTGCATTTAATCAATTTTGCAGGGAAGTTTGGCAGAGTAGTTTGA
CATGACAGTCTATTTCGTCCTAATTTGAATGCTTATAGTAATGTCCTCTTAATTTTGCATTCAAT
CAAATTTTGGTAGGGCAGTTTGGTTGGTAGTTTGGCATGACAGTTTATTTCGTCCCAATTTGAAT
CCTTATATAAATGTCCTCTTAATTTTGCTTTCAATCAATTTTGTCAGGTAGTTTAGCGTAGTTTG
GCTAAGTCAATTTCATTCCAATTTGAATGCTTATAAAATGTCCTCTTAATTTTGCATTCAACCAA
ATTTTGGTAGGGCAGTTTGGCTGGGT
Found at i:51437978 original size:10 final size:10
Alignment explanation
Indices: 51437963--51438008 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
51437953 TAATGTTAGC
51437963 ATTTATCTTT
1 ATTTATCTTT
51437973 ATTTATCTTT
1 ATTTATCTTT
*
51437983 AATTATCTTT
1 ATTTATCTTT
*
51437993 AATTAT-TTGT
1 ATTTATCTT-T
51438003 ATTTAT
1 ATTTAT
51438009 ATTTTAGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
9 2 0.06
10 31 0.94
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:51452555 original size:46 final size:46
Alignment explanation
Indices: 51452488--51452660 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
51452478 TAACCCGCCT
*
51452488 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
*
51452534 ATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
* * * *
51452580 ATAAGTGAACT-GGAACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT-C
1 ATAAGCGAACTCGG-ACTCAACTCAACGAGCTCGG--G-C--GTTCGCATCC
*
51452629 -TCA-CGAACTCGGACTCAACTCAACGAGCTCGG
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
51452661 AACTCAAATA
Statistics
Matches: 109, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
45 2 0.02
46 71 0.65
47 23 0.21
48 5 0.05
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
Found at i:51458432 original size:29 final size:28
Alignment explanation
Indices: 51458385--51458511 Score: 155
Period size: 28 Copynumber: 4.5 Consensus size: 28
51458375 CATGAGATTG
* **
51458385 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-AATTATATA
* *
51458414 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
* *
51458442 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTAATTATAT-A
*
51458471 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
51458499 ACACTAAGTGTGC
1 GCACTAAGTGTGC
51458512 AGACTTACTA
Statistics
Matches: 88, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.50
29 44 0.50
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:51458451 original size:28 final size:28
Alignment explanation
Indices: 51458411--51458512 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
51458401 TTTAAATTGC
51458411 ATAGCACTAAGTGTGCAAGTTTGATTAT
1 ATAGCACTAAGTGTGCAAGTTTGATTAT
*
51458439 ATAGCACTAAGTGTGCGAGTTTGATTAT
1 ATAGCACTAAGTGTGCAAGTTTGATTAT
* *
51458467 GTAAGCACTAAGTGTGCGAGTTTGATTAT
1 AT-AGCACTAAGTGTGCAAGTTTGATTAT
*
51458496 ATAACACTAAGTGTGCA
1 ATAGCACTAAGTGTGCA
51458513 GACTTACTAT
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
28 41 0.60
29 27 0.40
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (28 bp):
ATAGCACTAAGTGTGCAAGTTTGATTAT
Found at i:51458474 original size:57 final size:57
Alignment explanation
Indices: 51458385--51458511 Score: 184
Period size: 57 Copynumber: 2.2 Consensus size: 57
51458375 CATGAGATTG
*
51458385 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
51458442 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
51458499 ACACTAAGTGTGC
1 GCACTAAGTGTGC
51458512 AGACTTACTA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:51460247 original size:15 final size:16
Alignment explanation
Indices: 51460224--51460270 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 16
51460214 GAGGCAACCC
51460224 AATTTTTATTTTTATT
1 AATTTTTATTTTTATT
* *
51460240 TA-TTTTATTTTTCTT
1 AATTTTTATTTTTATT
51460255 AATTTTTA-TTTTATT
1 AATTTTTATTTTTATT
51460270 A
1 A
51460271 TTACTTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 20 0.77
16 6 0.23
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (16 bp):
AATTTTTATTTTTATT
Found at i:51460282 original size:21 final size:20
Alignment explanation
Indices: 51460234--51460282 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
51460224 AATTTTTATT
*
51460234 TTTA-TTTATTTTATTTTTC
1 TTTATTTTATTTTATTTTAC
*
51460253 TTAATTTTTATTTTATTATTAC
1 TTTA-TTTTATTTTATT-TTAC
51460275 TTTATTTT
1 TTTATTTT
51460283 GTTTGGATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 3 0.12
21 15 0.62
22 6 0.25
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTATTTTATTTTATTTTAC
Found at i:51462058 original size:40 final size:40
Alignment explanation
Indices: 51462012--51462236 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
51462002 CTTGCACAAG
* * *
51462012 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
51462052 GCCTTCGAGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
51462092 GCCTTCGGGTTTTAGCCCAGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
51462132 GCCTTCGGGTCTTAGCCTGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
51462172 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
51462213 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
51462237 CATTCGAATA
Statistics
Matches: 153, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 123 0.80
41 29 0.19
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:51462107 original size:80 final size:80
Alignment explanation
Indices: 51461976--51462236 Score: 276
Period size: 80 Copynumber: 3.3 Consensus size: 80
51461966 CTCAAATAAT
* * * * * * * *
51461976 CTTCGGGATTTAG-CTGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
51462039 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * * *
51462054 CTTCGAGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCAGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
51462118 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
51462134 CTTCGGGTCTTAGCCTGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
51462199 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
51462215 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
51462237 CATTCGAATA
Statistics
Matches: 148, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
78 11 0.07
79 15 0.10
80 90 0.61
81 32 0.22
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:51462186 original size:120 final size:121
Alignment explanation
Indices: 51462012--51462236 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 121
51462002 CTTGCACAAG
* * *
51462012 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGCCTTCGAGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATA
* * **
51462077 GTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCAGATATAATCGCTAGCACAAAT
66 GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCAGATATAATCGCTAGCACAAAT
* * * * *
51462132 GCCTTCGGGTCTTAGCCTGGATATAG-CAACTCGCACGAATGCCTTCG-GATCTTAGTCCGGTTA
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGAGA-CTTAGCCCGGATA
*
51462195 TAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
64 TAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCAGATAT
51462237 CATTCGAATA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 3 0.03
120 55 0.62
121 31 0.35
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (121 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATA
GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCAGATATAATCGCTAGCACAAAT
Found at i:51470231 original size:40 final size:40
Alignment explanation
Indices: 51470185--51470409 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
51470175 CTTGCACAAG
* * * * *
51470185 GCCTTCGGGTCTTAGCCTGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
51470225 TCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
51470265 GCCTTCGGGTTTTAGCCCAGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
51470305 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-GCTAGCACAAAT
* * * * *
51470345 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-GCTAGCACAAAT
*
51470386 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
51470410 CATTCGAATA
Statistics
Matches: 154, Mismatches: 29, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 123 0.80
41 30 0.19
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:51470280 original size:80 final size:79
Alignment explanation
Indices: 51470149--51470409 Score: 267
Period size: 80 Copynumber: 3.3 Consensus size: 79
51470139 CTCAAGTAAT
* * * * * * * *
51470149 CTTCGGGATTTAG-CCGTATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCTGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCC-GGATATAGT
* *
51470212 CACTAGCATAAATTC
65 CACTAGCACAAATGC
* * * *
51470227 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCAGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAG-CCGGATATAG
*
51470291 TCGCTAGCACAAATGC
64 TCACTAGCACAAATGC
* * * * *
51470307 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAG-CCGGATATAGT
*
51470372 CACCTAGCACAAAAGC
65 CA-CTAGCACAAATGC
51470388 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
51470410 CATTCGAATA
Statistics
Matches: 150, Mismatches: 27, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 88 0.59
81 35 0.23
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCGGATATAGTC
ACTAGCACAAATGC
Found at i:51470321 original size:120 final size:121
Alignment explanation
Indices: 51470185--51470409 Score: 285
Period size: 120 Copynumber: 1.9 Consensus size: 121
51470175 CTTGCACAAG
* * * * *
51470185 GCCTTCGGGTCTTAGCCTGGATGTGGTC-ACTAGCATAAATTCCTTCGGGA-CTTAGCCCGGATA
1 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTC-GGATCTTAGCCCGGATA
* * **
51470248 TAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCAGATATAATCGCTAGCACAAAT
64 TAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCAGATATAATCGCTAGCACAAAT
* * * *
51470305 GCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATA
1 GCCTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATA
*
51470370 GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
66 GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCAGATAT
51470410 CATTCGAATA
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
119 4 0.05
120 53 0.60
121 31 0.35
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (121 bp):
GCCTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATA
GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCAGATATAATCGCTAGCACAAAT
Found at i:51472310 original size:16 final size:14
Alignment explanation
Indices: 51472283--51472329 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
51472273 TACGATTTTG
51472283 TCTGTTTGATTTCA
1 TCTGTTTGATTTCA
**
51472297 TCTAGTTATGATTTTG
1 TCT-GTT-TGATTTCA
51472313 TCTGTTTGATTTCA
1 TCTGTTTGATTTCA
51472327 TCT
1 TCT
51472330 CCACTGTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 12 0.44
15 6 0.22
16 9 0.33
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.57
Consensus pattern (14 bp):
TCTGTTTGATTTCA
Found at i:51472310 original size:30 final size:30
Alignment explanation
Indices: 51472269--51472329 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
51472259 TCTACTAAGT
51472269 TAGTTACGATTTTGTCTGTTTGATTTCATC
1 TAGTTACGATTTTGTCTGTTTGATTTCATC
*
51472299 TAGTTATGATTTTGTCTGTTTGATTTCATC
1 TAGTTACGATTTTGTCTGTTTGATTTCATC
51472329 T
1 T
51472330 CCACTGTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.16, C:0.11, G:0.16, T:0.56
Consensus pattern (30 bp):
TAGTTACGATTTTGTCTGTTTGATTTCATC
Found at i:51472324 original size:14 final size:14
Alignment explanation
Indices: 51472276--51472324 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
51472266 AGTTAGTTAC
51472276 GATTTTGTCTGTTT
1 GATTTTGTCTGTTT
**
51472290 GATTTCATCTAGTTAT
1 GATTTTGTCT-GTT-T
51472306 GATTTTGTCTGTTT
1 GATTTTGTCTGTTT
51472320 GATTT
1 GATTT
51472325 CATCTCCACT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 14 0.48
15 6 0.21
16 9 0.31
ACGTcount: A:0.14, C:0.08, G:0.18, T:0.59
Consensus pattern (14 bp):
GATTTTGTCTGTTT
Found at i:51473566 original size:10 final size:10
Alignment explanation
Indices: 51473551--51473588 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
51473541 AATTTAGCAT
51473551 TTATCTTTAA
1 TTATCTTTAA
51473561 TTATCTTTAA
1 TTATCTTTAA
* *
51473571 TTATTTTTAT
1 TTATCTTTAA
51473581 TTATCTTT
1 TTATCTTT
51473589 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:51474330 original size:6 final size:6
Alignment explanation
Indices: 51474319--51474347 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
51474309 GTTTGACATC
51474319 AATATA AATATA AATATA AATATA AATAT
1 AATATA AATATA AATATA AATATA AATAT
51474348 TATTCATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AATATA
Found at i:51477959 original size:76 final size:77
Alignment explanation
Indices: 51477867--51478021 Score: 240
Period size: 76 Copynumber: 2.0 Consensus size: 77
51477857 AATTAAATTG
* * *
51477867 TGGTGCATCAAGTAAATTGCATGAGTAATTACAATAAAAATTAATTAAT-AAATATTTTTTAATT
1 TGGTGCATCAAGTAAATTGCATGAATAATTACAATAAAAATTAATTAATAAAAAATCTTTTAATT
51477931 AATACAAAAGTA
66 AATACAAAAGTA
* *
51477943 TGGTTCATCAATTAAATTGCATGAATAATTACAATAAAAATTAATTAATAAAAAATCTTTTAATT
1 TGGTGCATCAAGTAAATTGCATGAATAATTACAATAAAAATTAATTAATAAAAAATCTTTTAATT
* *
51478008 AATGCAAAATTA
66 AATACAAAAGTA
51478020 TG
1 TG
51478022 ATACAAAATC
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
76 46 0.65
77 25 0.35
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (77 bp):
TGGTGCATCAAGTAAATTGCATGAATAATTACAATAAAAATTAATTAATAAAAAATCTTTTAATT
AATACAAAAGTA
Found at i:51480226 original size:16 final size:16
Alignment explanation
Indices: 51480205--51480244 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
51480195 GTTTAGGGTT
*
51480205 TTCTTTGTGTTTTGTA
1 TTCTTTATGTTTTGTA
51480221 TTCTTTATGTTTTGTA
1 TTCTTTATGTTTTGTA
51480237 TTCTTTAT
1 TTCTTTAT
51480245 TCTTCTGAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.10, C:0.07, G:0.12, T:0.70
Consensus pattern (16 bp):
TTCTTTATGTTTTGTA
Found at i:51488825 original size:67 final size:70
Alignment explanation
Indices: 51488678--51488838 Score: 193
Period size: 67 Copynumber: 2.3 Consensus size: 70
51488668 TATTTTTTGC
* * * *
51488678 CATAGTCAAGCTATGGTCTTACACAATGTAACCCCCTATTTTTGTTGTCCTGGCAGACTCTATTT
1 CATAGTCGAGCTATGGTCTTACACAATGTAACCCCCTATTTATGTTGTCCTAGCAGACTCTATTG
*
51488743 GTTTT
66 GTTAT
* * * * * **
51488748 CATAGCCGAGCCAT-GTCTTACATAATGTAACCCCGTGTTTAT-TT-TCCTAGTGGACTCTATTG
1 CATAGTCGAGCTATGGTCTTACACAATGTAACCCCCTATTTATGTTGTCCTAGCAGACTCTATTG
51488810 GTTAT
66 GTTAT
51488815 CATAGTCGAGCTATGGTCTTACAC
1 CATAGTCGAGCTATGGTCTTACAC
51488839 CATAAACCTC
Statistics
Matches: 75, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
67 30 0.40
68 10 0.13
69 24 0.32
70 11 0.15
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.37
Consensus pattern (70 bp):
CATAGTCGAGCTATGGTCTTACACAATGTAACCCCCTATTTATGTTGTCCTAGCAGACTCTATTG
GTTAT
Found at i:51500323 original size:69 final size:68
Alignment explanation
Indices: 51500212--51500349 Score: 267
Period size: 69 Copynumber: 2.0 Consensus size: 68
51500202 CCTATGTTGG
51500212 CCTATTGGGTCACAACACCTACAAAATGTGTTAAAAACACTTATTTTTATTAACTTTTAATCTCA
1 CCTATTGGGTCACAACACCTACAAAATGTGTTAAAAACACTTATTTTTATTAAC-TTTAATCTCA
51500277 AGGT
65 AGGT
51500281 CCTATTGGGTCACAACACCTACAAAATGTGTTAAAAACACTTATTTTTATTAACTTTAATCTCAA
1 CCTATTGGGTCACAACACCTACAAAATGTGTTAAAAACACTTATTTTTATTAACTTTAATCTCAA
51500346 GGT
66 GGT
51500349 C
1 C
51500350 TAAATACTCA
Statistics
Matches: 69, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
68 15 0.22
69 54 0.78
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.36
Consensus pattern (68 bp):
CCTATTGGGTCACAACACCTACAAAATGTGTTAAAAACACTTATTTTTATTAACTTTAATCTCAA
GGT
Found at i:51506281 original size:12 final size:11
Alignment explanation
Indices: 51506251--51506300 Score: 52
Period size: 12 Copynumber: 4.6 Consensus size: 11
51506241 TAAGTCTTCA
51506251 AAAAT-AAA-T
1 AAAATAAAATT
51506260 AAAATAAAATT
1 AAAATAAAATT
51506271 AAAATTAAAATT
1 AAAA-TAAAATT
*
51506283 AAAA-AATAATA
1 AAAATAA-AATT
51506294 AAAATAA
1 AAAATAA
51506301 TAAAATAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
9 5 0.14
10 5 0.14
11 12 0.34
12 13 0.37
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAATAAAATT
Found at i:51506297 original size:17 final size:18
Alignment explanation
Indices: 51506252--51506313 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 18
51506242 AAGTCTTCAA
51506252 AAATAAATAA-AATAAAATT
1 AAATAAA-AATAATAAAA-T
*
51506271 AAAATTAAAATTAA-AAAAT
1 -AAA-TAAAAATAATAAAAT
51506290 -AATAAAAATAATAAAAT
1 AAATAAAAATAATAAAAT
51506307 AAATAAA
1 AAATAAA
51506314 CTCAAAAGTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
16 8 0.22
17 7 0.19
18 6 0.17
19 1 0.03
20 8 0.22
21 6 0.17
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATAAAAATAATAAAAT
Found at i:51508419 original size:26 final size:27
Alignment explanation
Indices: 51508390--51508442 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
51508380 AGGCCCATGT
* *
51508390 TGGCTTGAATATTGCCCGTGTG-TGTG
1 TGGCTCGAATATTGCCAGTGTGCTGTG
*
51508416 TGGCTCGGATATTGCCAGTGTGCTGTG
1 TGGCTCGAATATTGCCAGTGTGCTGTG
51508443 GATCGAGTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.11, C:0.17, G:0.36, T:0.36
Consensus pattern (27 bp):
TGGCTCGAATATTGCCAGTGTGCTGTG
Found at i:51524186 original size:24 final size:25
Alignment explanation
Indices: 51524159--51524207 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
51524149 ATATTTTTCT
51524159 ACTGATTTTTT-TGTTGAATTTGGA
1 ACTGATTTTTTCTGTTGAATTTGGA
51524183 ACTGATTTTTTCTGTTGAATTTGGA
1 ACTGATTTTTTCTGTTGAATTTGGA
51524208 CTTCTTTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.20, C:0.06, G:0.20, T:0.53
Consensus pattern (25 bp):
ACTGATTTTTTCTGTTGAATTTGGA
Found at i:51533443 original size:47 final size:47
Alignment explanation
Indices: 51533389--51533840 Score: 624
Period size: 47 Copynumber: 9.6 Consensus size: 47
51533379 TATTTGAATA
* *
51533389 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51533436 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
51533483 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51533532 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51533579 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
51533626 AATGTGAACA-TGTGTATGTGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
51533673 AATATGAACA-TGCATATCTGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
51533720 AATGTGAAAATGCATATATGTGATAAGGCCGAATGGCCAATGTGGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
51533767 AATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
51533814 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
51533841 TCCCGAAGGG
Statistics
Matches: 371, Mismatches: 30, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
46 1 0.00
47 326 0.88
49 43 0.12
50 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:51548495 original size:20 final size:22
Alignment explanation
Indices: 51548470--51548509 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
51548460 ATATGATGAT
*
51548470 TTGCTT-TTAATT-TTTTTTAC
1 TTGCTTATAAATTCTTTTTTAC
51548490 TTGCTTATAAATTCTTTTTT
1 TTGCTTATAAATTCTTTTTT
51548510 TATCATACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.17, C:0.10, G:0.05, T:0.68
Consensus pattern (22 bp):
TTGCTTATAAATTCTTTTTTAC
Found at i:51549618 original size:20 final size:20
Alignment explanation
Indices: 51549568--51549619 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
51549558 ATTTGTAATG
51549568 ATTATATTTTAATATTTTAA
1 ATTATATTTTAATATTTTAA
* *
51549588 AATATAGTTT-ATATATTTAA
1 ATTATATTTTAATAT-TTTAA
*
51549608 ATTAAATTTTAA
1 ATTATATTTTAA
51549620 AAATAATTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 4 0.16
20 20 0.80
21 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (20 bp):
ATTATATTTTAATATTTTAA
Found at i:51549635 original size:23 final size:23
Alignment explanation
Indices: 51549604--51549654 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
51549594 GTTTATATAT
51549604 TTAAATTAAAT-TTTAAAAATAA
1 TTAAATTAAATGTTTAAAAATAA
* *
51549626 TTAATATTAATTGTTTAAAAATAT
1 TTAA-ATTAAATGTTTAAAAATAA
51549650 TTAAA
1 TTAAA
51549655 AATTATATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 4 0.16
23 7 0.28
24 14 0.56
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
TTAAATTAAATGTTTAAAAATAA
Found at i:51549666 original size:24 final size:22
Alignment explanation
Indices: 51549606--51549666 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 22
51549596 TTATATATTT
51549606 AAATTAAATTTTAAAAATAATTA
1 AAATT-AATTTTAAAAATAATTA
* *
51549629 ATATTAATTGTTTAAAAATATTTAA
1 AAATTAA-T-TTTAAAAATAATT-A
51549654 AAATTATATTTTA
1 AAATTA-ATTTTA
51549667 TATATCAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
22 2 0.06
23 5 0.16
24 16 0.52
25 7 0.23
26 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
AAATTAATTTTAAAAATAATTA
Found at i:51552431 original size:41 final size:41
Alignment explanation
Indices: 51552336--51552655 Score: 453
Period size: 41 Copynumber: 7.8 Consensus size: 41
51552326 TTTTAGAATA
* *** *
51552336 AAACGCCACTAAAAACTGAGCAATAGCGGC-TTTTTTGTTC
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCAAGTCC
* *
51552376 AAACGCCACTAAAAACCGAGCAATAGTGGCGTTTCAGGTCC
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCAAGTCC
* *
51552417 AAACGCCACTAAAAATCGAGCAATAGCGGCGTTTCAGGTCC
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCAAGTCC
** *
51552458 AAACGCCACTAAAAATAGAGCAATAGCGGCGTTTTAAGTCC
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCAAGTCC
51552499 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCAAGTCC
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCAAGTCC
* **
51552540 AAACGCCACTAAAAACCGAGCAATAACGGCGTTTCAAGTGA
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCAAGTCC
* * *
51552581 AAAAGCCAGTAAAAACCGAGCAATAACGGCGTTTCAAGTCC
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCAAGTCC
* *
51552622 AAATGCCACTAAAAATCGAGCAATAGCGGCGTTT
1 AAACGCCACTAAAAACCGAGCAATAGCGGCGTTT
51552656 TTGGTCAAAA
Statistics
Matches: 254, Mismatches: 25, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
40 28 0.11
41 226 0.89
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (41 bp):
AAACGCCACTAAAAACCGAGCAATAGCGGCGTTTCAAGTCC
Found at i:51552830 original size:18 final size:17
Alignment explanation
Indices: 51552798--51552832 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
51552788 ATTTTCTTAT
*
51552798 TTTTGTTTTGAATTTGA
1 TTTTATTTTGAATTTGA
51552815 TTTTATTTTGATATTTGA
1 TTTTATTTTGA-ATTTGA
51552833 AACTGATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.20, C:0.00, G:0.14, T:0.66
Consensus pattern (17 bp):
TTTTATTTTGAATTTGA
Found at i:51553608 original size:21 final size:21
Alignment explanation
Indices: 51553557--51553609 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
51553547 TAAGTTTATG
*
51553557 GTTTAAGGTTTGTTATTTTGG
1 GTTTAAGGTTTGTTATTTTGA
* **
51553578 GCTTGGGGTTTGTTATTTTGA
1 GTTTAAGGTTTGTTATTTTGA
51553599 GTTTAAGGTTT
1 GTTTAAGGTTT
51553610 AGGGTATATA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.13, C:0.02, G:0.30, T:0.55
Consensus pattern (21 bp):
GTTTAAGGTTTGTTATTTTGA
Found at i:51553632 original size:22 final size:21
Alignment explanation
Indices: 51553607--51553653 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
51553597 GAGTTTAAGG
*
51553607 TTTAGGGTATATAATTTTAGGC
1 TTTAGGCTATAT-ATTTTAGGC
* *
51553629 TTTAGGCTTTATATTTTAGGG
1 TTTAGGCTATATATTTTAGGC
51553650 TTTA
1 TTTA
51553654 ATGTTTAGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.23, C:0.04, G:0.21, T:0.51
Consensus pattern (21 bp):
TTTAGGCTATATATTTTAGGC
Found at i:51554019 original size:60 final size:58
Alignment explanation
Indices: 51553951--51554342 Score: 222
Period size: 60 Copynumber: 6.7 Consensus size: 58
51553941 TCGTCCACAA
51553951 TTATAAAATTATACAAATTAATTTTATTTTATTTAAAAGTTTAATAATTTTATTAAAAGT
1 TTATAAAATTATACAAATTAATTTTATTTTATTTAAAA--TTAATAATTTTATTAAAAGT
* * * **
51554011 TTATAAAATTATACAAATTAATTTTATTTTATTTAAAAGATTAATAAATTAATT-TACTT
1 TTATAAAATTATACAAATTAATTTTATTTTATTT-AAA-ATTAATAATTTTATTAAAAGT
* * ** * * * * * * *
51554070 TTAAATAAAATAAAATTATTTAAAAGTCTATATAATTATACAAATTAATTTTAGTTTATTTAAAA
1 TT--ATAAAATTATACAAATT--AATTTTATTTTATT-TA-AAATTAA--TAATTTTA-TTAAAA
51554135 GT
57 GT
* * ** * *** **
51554137 TTA-ATAATTTTATTAA--AAGTTTATAAAATTATACAAA-T--TAATTTTATT-TTA-T
1 TTATAAAATTATACAAATTAATTTTATTTTATT-TA-AAATTAATAATTTTATTAAAAGT
** *
51554189 TTA-AAATATTAATA-AAATTAA-TTTACTTTTAAATAAAA-TAA-AATTAT-TTAAAAGT
1 TTATAAA-ATT-ATACAAATTAATTTTA-TTTTATTTAAAATTAATAATTTTATTAAAAGT
51554244 TTA-AATAATTATACAAATTAATTTTATTTTATTTAAAAGTTTAATAATTTTATTAAAAGT
1 TTATAA-AATTATACAAATTAATTTTATTTTATTTAAAA--TTAATAATTTTATTAAAAGT
51554304 TTATAAAATTATACAAATTAATTTTATTTTATTTAAAAT
1 TTATAAAATTATACAAATTAATTTTATTTTATTTAAAAT
51554343 ATTAATAAAA
Statistics
Matches: 257, Mismatches: 45, Indels: 62
0.71 0.12 0.17
Matches are distributed among these distances:
52 6 0.02
53 12 0.05
54 19 0.07
55 36 0.14
56 5 0.02
58 4 0.02
59 10 0.04
60 108 0.42
61 17 0.07
62 1 0.00
63 16 0.06
64 11 0.04
65 6 0.02
66 2 0.01
67 4 0.02
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (58 bp):
TTATAAAATTATACAAATTAATTTTATTTTATTTAAAATTAATAATTTTATTAAAAGT
Found at i:51554020 original size:21 final size:21
Alignment explanation
Indices: 51553976--51554020 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
51553966 AATTAATTTT
*
51553976 ATTTTATTTAAAAGTTTAATA
1 ATTTTATTTAAAAGTTTAAAA
51553997 ATTTTA-TTAAAAGTTTATAAA
1 ATTTTATTTAAAAGTTTA-AAA
51554018 ATT
1 ATT
51554021 ATACAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (21 bp):
ATTTTATTTAAAAGTTTAAAA
Found at i:51554166 original size:21 final size:21
Alignment explanation
Indices: 51554124--51554166 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
51554114 TTAATTTTAG
*
51554124 TTTATTTAAAAGTTTAATAAT
1 TTTATTTAAAAGTTTAAAAAT
51554145 TTTA-TTAAAAGTTTATAAAAT
1 TTTATTTAAAAGTTTA-AAAAT
51554166 T
1 T
51554167 ATACAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (21 bp):
TTTATTTAAAAGTTTAAAAAT
Found at i:51554219 original size:32 final size:31
Alignment explanation
Indices: 51554171--51554375 Score: 104
Period size: 32 Copynumber: 6.8 Consensus size: 31
51554161 AAAATTATAC
51554171 AAATTAATTTTATTTTATTTAAAATATTAATA
1 AAATTAA-TTTATTTTATTTAAAATATTAATA
* *
51554203 AAATTAATTTA--CT-TTT-AAATA-AAATA
1 AAATTAATTTATTTTATTTAAAATATTAATA
**
51554229 AAATT-ATTTA--AAAGTTT-AAATAATT-ATA
1 AAATTAATTTATTTTA-TTTAAAAT-ATTAATA
51554257 CAAATTAATTTTATTTTATTTAAAAGT-TTAAT-
1 -AAATTAA-TTTATTTTATTTAAAA-TATTAATA
**
51554289 -AA-T--TTTATTAAAAGTTTATAAA-ATT-ATA
1 AAATTAATTTATT-TTA-TTTA-AAATATTAATA
51554317 CAAATTAATTTTATTTTATTTAAAATATTAATA
1 -AAATTAA-TTTATTTTATTTAAAATATTAATA
**
51554350 AAATTAATTTACTTTTAAATAAAATA
1 AAATTAATTTA-TTTTATTTAAAATA
51554376 AAATTATTTA
Statistics
Matches: 134, Mismatches: 13, Indels: 52
0.67 0.07 0.26
Matches are distributed among these distances:
25 5 0.04
26 15 0.11
27 15 0.11
28 13 0.10
29 10 0.07
30 5 0.04
31 16 0.12
32 38 0.28
33 10 0.07
34 7 0.05
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (31 bp):
AAATTAATTTATTTTATTTAAAATATTAATA
Found at i:51554255 original size:20 final size:19
Alignment explanation
Indices: 51554230--51554306 Score: 57
Period size: 20 Copynumber: 3.9 Consensus size: 19
51554220 AATAAAATAA
51554230 AATTATTTAAAAGTTTAAAT
1 AATTATTTAAAAGTTT-AAT
** * *
51554250 AATTATACAAATTAATTTTAT
1 AATTATTTAAA--AGTTTAAT
*
51554271 -TTTATTTAAAAGTTTAAT
1 AATTATTTAAAAGTTTAAT
*
51554289 AATTTTATTAAAAGTTTA
1 AATTAT-TTAAAAGTTTA
51554307 TAAAATTATA
Statistics
Matches: 42, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
18 6 0.14
19 3 0.07
20 27 0.64
21 2 0.05
22 4 0.10
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.49
Consensus pattern (19 bp):
AATTATTTAAAAGTTTAAT
Found at i:51554287 original size:147 final size:147
Alignment explanation
Indices: 51553957--51554583 Score: 1193
Period size: 147 Copynumber: 4.3 Consensus size: 147
51553947 ACAATTATAA
51553957 AATTATACAAATTAATTTTATTTTATTTAAAAGTTTAATAATTTTATTAAAAGTTTATAAAATTA
1 AATTATACAAATTAATTTTATTTTATTTAAAAGTTTAATAATTTTATTAAAAGTTTATAAAATTA
51554022 TACAAATTAATTTTATTTTATTTAAAAGATTAAT-AAATTAATTTACTTTTAAATAAAATAAAAT
66 TACAAATTAATTTTATTTTATTTAAAAGATTAATAAAATTAATTTACTTTTAAATAAAATAAAAT
* *
51554086 TATTTAAAAGTCTATAT
131 TATTTAAAAGTTTAAAT
*
51554103 AATTATACAAATTAATTTTAGTTTATTTAAAAGTTTAATAATTTTATTAAAAGTTTATAAAATTA
1 AATTATACAAATTAATTTTATTTTATTTAAAAGTTTAATAATTTTATTAAAAGTTTATAAAATTA
*
51554168 TACAAATTAATTTTATTTTATTTAAAATATTAATAAAATTAATTTACTTTTAAATAAAATAAAAT
66 TACAAATTAATTTTATTTTATTTAAAAGATTAATAAAATTAATTTACTTTTAAATAAAATAAAAT
51554233 TATTTAAAAGTTTAAAT
131 TATTTAAAAGTTTAAAT
51554250 AATTATACAAATTAATTTTATTTTATTTAAAAGTTTAATAATTTTATTAAAAGTTTATAAAATTA
1 AATTATACAAATTAATTTTATTTTATTTAAAAGTTTAATAATTTTATTAAAAGTTTATAAAATTA
*
51554315 TACAAATTAATTTTATTTTATTTAAAATATTAATAAAATTAATTTACTTTTAAATAAAATAAAAT
66 TACAAATTAATTTTATTTTATTTAAAAGATTAATAAAATTAATTTACTTTTAAATAAAATAAAAT
*
51554380 TATTTAAAAGTTTATAT
131 TATTTAAAAGTTTAAAT
51554397 AATTATACAAATTAATTTTATTTTATTTAAAAGTTTAATAATTTTATTAAAAGTTTATAAAATTA
1 AATTATACAAATTAATTTTATTTTATTTAAAAGTTTAATAATTTTATTAAAAGTTTATAAAATTA
51554462 TACAAATTAATTTTATTTTATTTAAAAGATTAATAAAATTAATTTACTTTTAAATAAAATAAAAT
66 TACAAATTAATTTTATTTTATTTAAAAGATTAATAAAATTAATTTACTTTTAAATAAAATAAAAT
51554527 TATTTAAAAGTTTAAAT
131 TATTTAAAAGTTTAAAT
51554544 AATTATACAAATTAATTTTATTTTATTTAAAAGTTTAATA
1 AATTATACAAATTAATTTTATTTTATTTAAAAGTTTAATA
51554584 CAAATTATTT
Statistics
Matches: 472, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
146 97 0.21
147 375 0.79
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48
Consensus pattern (147 bp):
AATTATACAAATTAATTTTATTTTATTTAAAAGTTTAATAATTTTATTAAAAGTTTATAAAATTA
TACAAATTAATTTTATTTTATTTAAAAGATTAATAAAATTAATTTACTTTTAAATAAAATAAAAT
TATTTAAAAGTTTAAAT
Found at i:51554313 original size:21 final size:21
Alignment explanation
Indices: 51554269--51554313 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
51554259 AATTAATTTT
*
51554269 ATTTTATTTAAAAGTTTAATA
1 ATTTTATTTAAAAGTTTAAAA
51554290 ATTTTA-TTAAAAGTTTATAAA
1 ATTTTATTTAAAAGTTTA-AAA
51554311 ATT
1 ATT
51554314 ATACAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (21 bp):
ATTTTATTTAAAAGTTTAAAA
Found at i:51554402 original size:20 final size:20
Alignment explanation
Indices: 51554377--51554462 Score: 70
Period size: 20 Copynumber: 4.3 Consensus size: 20
51554367 AATAAAATAA
51554377 AATTATTTAAAAGTTTATAT
1 AATTATTTAAAAGTTTATAT
** *
51554397 AATTATACAAATTAATTT-TAT
1 AATTATTTAAA--AGTTTATAT
*
51554418 -TTTATTTAAAAGTTTA-AT
1 AATTATTTAAAAGTTTATAT
* *
51554436 AATTTTATTAAAAGTTTATAA
1 AATTAT-TTAAAAGTTTATAT
51554457 AATTAT
1 AATTAT
51554463 ACAAATTAAT
Statistics
Matches: 49, Mismatches: 11, Indels: 11
0.69 0.15 0.15
Matches are distributed among these distances:
18 6 0.12
19 3 0.06
20 27 0.55
21 9 0.18
22 4 0.08
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.50
Consensus pattern (20 bp):
AATTATTTAAAAGTTTATAT
Found at i:51554410 original size:55 final size:57
Alignment explanation
Indices: 51554350--51554481 Score: 162
Period size: 60 Copynumber: 2.3 Consensus size: 57
51554340 AATATTAATA
*
51554350 AAATTAATTTACTTTTAAATAAAA-TAA-AATTAT-TTAAAAGTTTATATAATTATAC
1 AAATTAATTTA-TTTTAAATAAAATTAATAATTATATTAAAAGTTTATAAAATTATAC
** *
51554405 AAATTAATTTTATTTTATTTAAAAGTTTAATAATTTTATTAAAAGTTTATAAAATTATAC
1 AAATTAA-TTTATTTTAAATAAAA--TTAATAATTATATTAAAAGTTTATAAAATTATAC
51554465 AAATTAATTTTATTTTA
1 AAATTAA-TTTATTTTA
51554482 TTTAAAAGAT
Statistics
Matches: 67, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
55 17 0.25
56 4 0.06
58 3 0.04
59 5 0.07
60 38 0.57
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.48
Consensus pattern (57 bp):
AAATTAATTTATTTTAAATAAAATTAATAATTATATTAAAAGTTTATAAAATTATAC
Found at i:51554463 original size:60 final size:60
Alignment explanation
Indices: 51554383--51554497 Score: 212
Period size: 60 Copynumber: 1.9 Consensus size: 60
51554373 ATAAAATTAT
* *
51554383 TTAAAAGTTTATATAATTATACAAATTAATTTTATTTTATTTAAAAGTTTAATAATTTTA
1 TTAAAAGTTTATAAAATTATACAAATTAATTTTATTTTATTTAAAAGATTAATAATTTTA
51554443 TTAAAAGTTTATAAAATTATACAAATTAATTTTATTTTATTTAAAAGATTAATAA
1 TTAAAAGTTTATAAAATTATACAAATTAATTTTATTTTATTTAAAAGATTAATAA
51554498 AATTAATTTA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (60 bp):
TTAAAAGTTTATAAAATTATACAAATTAATTTTATTTTATTTAAAAGATTAATAATTTTA
Found at i:51554506 original size:32 final size:31
Alignment explanation
Indices: 51554398--51554506 Score: 104
Period size: 32 Copynumber: 3.5 Consensus size: 31
51554388 AGTTTATATA
51554398 ATTATACAAATTAATTTTATTTTATTTAAAAG
1 ATTATA-AAATTAATTTTATTTTATTTAAAAG
**
51554430 -TT-T--AA-TAATTTTATTAAAAGTTTATAAA-
1 ATTATAAAATTAATTTTATT-TTA-TTTA-AAAG
51554458 ATTATACAAATTAATTTTATTTTATTTAAAAG
1 ATTATA-AAATTAATTTTATTTTATTTAAAAG
51554490 ATTAATAAAATTAATTT
1 ATT-ATAAAATTAATTT
51554507 ACTTTTAAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 22
0.70 0.05 0.25
Matches are distributed among these distances:
26 10 0.16
27 3 0.05
28 4 0.06
29 5 0.08
30 2 0.03
31 5 0.08
32 17 0.27
33 6 0.10
34 10 0.16
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.50
Consensus pattern (31 bp):
ATTATAAAATTAATTTTATTTTATTTAAAAG
Found at i:51554897 original size:22 final size:22
Alignment explanation
Indices: 51554856--51554897 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
51554846 CCCAATTTGA
* **
51554856 AATCCCCAAATCTATTTCCCAT
1 AATCCCCAAATCAAAATCCCAT
51554878 AATCCCCAAATCAAAATCCC
1 AATCCCCAAATCAAAATCCC
51554898 TTTTACTTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.24
Consensus pattern (22 bp):
AATCCCCAAATCAAAATCCCAT
Found at i:51556263 original size:9 final size:9
Alignment explanation
Indices: 51556249--51556306 Score: 59
Period size: 9 Copynumber: 6.7 Consensus size: 9
51556239 CAAATGAAAA
51556249 TTAATGTTT
1 TTAATGTTT
*
51556258 TTAATG--A
1 TTAATGTTT
*
51556265 TTAATTTTTT
1 TTAA-TGTTT
*
51556275 TTAATG-AT
1 TTAATGTTT
51556283 TTAATGTTT
1 TTAATGTTT
51556292 TTAATGTTT
1 TTAATGTTT
51556301 TTAATG
1 TTAATG
51556307 ATTTAAACTT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
7 4 0.10
8 8 0.21
9 23 0.59
10 4 0.10
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (9 bp):
TTAATGTTT
Found at i:51556277 original size:17 final size:17
Alignment explanation
Indices: 51556249--51556297 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
51556239 CAAATGAAAA
51556249 TTAATGTTTTTAATGA-
1 TTAATGTTTTTAATGAT
*
51556265 TTAATTTTTTTTAATGAT
1 TTAA-TGTTTTTAATGAT
51556283 TTAATGTTTTTAATG
1 TTAATGTTTTTAATG
51556298 TTTTTAATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 4 0.14
17 21 0.72
18 4 0.14
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (17 bp):
TTAATGTTTTTAATGAT
Found at i:51556336 original size:43 final size:42
Alignment explanation
Indices: 51556249--51556337 Score: 99
Period size: 43 Copynumber: 2.1 Consensus size: 42
51556239 CAAATGAAAA
* ** *
51556249 TTAATGTTTTTAATGATTAATTTTTTTTAATGATTTAATGTTT
1 TTAATGTTTTTAATGATTAACTTAGTTTAAT-ATTTAATATTT
*
51556292 TTAATGTTTTTAATGATTTAAACTTAGTTTAAT-TTTATTATTT
1 TTAATGTTTTTAATGA-TT-AACTTAGTTTAATATTTAATATTT
51556335 TTA
1 TTA
51556338 GTCAAATGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
43 27 0.69
44 2 0.05
45 10 0.26
ACGTcount: A:0.29, C:0.01, G:0.08, T:0.62
Consensus pattern (42 bp):
TTAATGTTTTTAATGATTAACTTAGTTTAATATTTAATATTT
Found at i:51559523 original size:103 final size:102
Alignment explanation
Indices: 51559336--51559640 Score: 449
Period size: 103 Copynumber: 3.0 Consensus size: 102
51559326 TCAATGACAT
* *
51559336 AGTTTTATTTTGAATATGTTATTTTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTAT
1 AGTTTT-TTTTAAATAT-TT-TATTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTAT
51559401 TTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAA
63 TTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAA
*
51559441 AGTTTTTTTTAAATATTTTATTGCATTTTATTTTAATCAC-AAAAATATTTTGTCTACTCTTATT
1 AGTTTTTTTTAAATATTTTATT--ATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTATT
* *
51559505 TTATTTTTAAATTACCTAATTAAATTATATTATATTTAA
64 TTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAA
* *
51559544 AG--TTTTTTAAATATTTT-TTATTTTATTTTAATCACGAAAAATATTTTGTTTACTTTTATTTT
1 AGTTTTTTTTAAATATTTTATTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTATTTT
*
51559606 -TTTGTTAAATAACCTAATTAAATTAAATTGTATTT
66 ATTT-TTAAATTACCTAATTAAATTAAATTGTATTT
51559641 TTAAATATTG
Statistics
Matches: 186, Mismatches: 10, Indels: 14
0.89 0.05 0.07
Matches are distributed among these distances:
98 19 0.10
99 52 0.28
100 2 0.01
101 15 0.08
102 3 0.02
103 64 0.34
104 25 0.13
105 6 0.03
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (102 bp):
AGTTTTTTTTAAATATTTTATTATTTTATTTTAATCACAAAAAATATTTTGTCTACTTTTATTTT
ATTTTTAAATTACCTAATTAAATTAAATTGTATTTAA
Found at i:51559928 original size:9 final size:9
Alignment explanation
Indices: 51559912--51560037 Score: 69
Period size: 9 Copynumber: 13.8 Consensus size: 9
51559902 ATATCATATC
51559912 TTACATAAT
1 TTACATAAT
*
51559921 TTACATAAG
1 TTACATAAT
* * * *
51559930 ATAAACAAC
1 TTACATAAT
51559939 TTACATAAT
1 TTACATAAT
* *
51559948 TTTCATAAC
1 TTACATAAT
51559957 TTACATAA-
1 TTACATAAT
51559965 -TACATAAAT
1 TTACAT-AAT
51559974 ATATATCAT-AT
1 -T-TA-CATAAT
*
51559985 CGTACATAAT
1 -TTACATAAT
51559995 TTACATAAT
1 TTACATAAT
*** *
51560004 TCGGATAAC
1 TTACATAAT
51560013 TTACATAAT
1 TTACATAAT
*
51560022 TTACATAAC
1 TTACATAAT
51560031 TTACATA
1 TTACATA
51560038 GTACATAAAT
Statistics
Matches: 86, Mismatches: 24, Indels: 14
0.69 0.19 0.11
Matches are distributed among these distances:
7 5 0.06
8 2 0.02
9 68 0.79
10 4 0.05
11 2 0.02
12 2 0.02
13 3 0.03
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (9 bp):
TTACATAAT
Found at i:51559957 original size:18 final size:18
Alignment explanation
Indices: 51559912--51560037 Score: 85
Period size: 18 Copynumber: 6.9 Consensus size: 18
51559902 ATATCATATC
* *
51559912 TTACATAATTTACATAAG
1 TTACATAACTTACATAAT
* * *
51559930 ATAAACAACTTACATAAT
1 TTACATAACTTACATAAT
*
51559948 TTTCATAACTTACATAA-
1 TTACATAACTTACATAAT
* *
51559965 -TACATAAATATATATCATAT
1 TTACATAACT-TACAT-A-AT
* *
51559985 CGTACATAATTTACATAAT
1 -TTACATAACTTACATAAT
***
51560004 TCGGATAACTTACATAAT
1 TTACATAACTTACATAAT
51560022 TTACATAACTTACATA
1 TTACATAACTTACATA
51560038 GTACATAAAT
Statistics
Matches: 80, Mismatches: 22, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
16 7 0.09
17 4 0.05
18 53 0.66
19 3 0.04
20 1 0.01
21 4 0.05
22 8 0.10
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (18 bp):
TTACATAACTTACATAAT
Found at i:51560014 original size:74 final size:74
Alignment explanation
Indices: 51559892--51560059 Score: 257
Period size: 74 Copynumber: 2.3 Consensus size: 74
51559882 AATCCCATCA
* *
51559892 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTACATAATTTTCATAAC
1 ACATAAATATATATCATATCGTACATAATTTACATAAGATAAACAACTTACATAATTTACATAAC
51559957 TTACATAAT
66 TTACATAAT
* ** *
51559966 ACATAAATATATATCATATCGTACATAATTTACATAA-TTCGGATAACTTACATAATTTACATAA
1 ACATAAATATATATCATATCGTACATAATTTACATAAGAT-AAACAACTTACATAATTTACATAA
*
51560030 CTTACATAGT
65 CTTACATAAT
51560040 ACATAAATATATATCATATC
1 ACATAAATATATATCATATC
51560060 ATAACTTACA
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
73 1 0.01
74 85 0.99
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (74 bp):
ACATAAATATATATCATATCGTACATAATTTACATAAGATAAACAACTTACATAATTTACATAAC
TTACATAAT
Found at i:51565141 original size:13 final size:14
Alignment explanation
Indices: 51565125--51565153 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
51565115 TTATAAATAT
51565125 TTATAATG-TTTAA
1 TTATAATGTTTTAA
51565138 TTATAATGTTTTAA
1 TTATAATGTTTTAA
51565152 TT
1 TT
51565154 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATGTTTTAA
Found at i:51565612 original size:21 final size:21
Alignment explanation
Indices: 51565559--51565613 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
51565549 ACAACTTAGA
51565559 GCAGAGGCAGCAGCGAGGGAG
1 GCAGAGGCAGCAGCGAGGGAG
* **
51565580 GCAGCGATAGCAGCGAGGGAG
1 GCAGAGGCAGCAGCGAGGGAG
51565601 GCAGAGGCAGCAG
1 GCAGAGGCAGCAG
51565614 TGATGGCAGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGCGAGGGAG
Found at i:51565886 original size:42 final size:42
Alignment explanation
Indices: 51565840--51565923 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
51565830 AAGTATCATT
51565840 TAGATTTAATGTTTTTGGTTGTATTTTTTATGCTACATTTGC
1 TAGATTTAATGTTTTTGGTTGTATTTTTTATGCTACATTTGC
51565882 TAGATTTAATGTTTTTGGTTGTATTTTTTATGCTACATTTGC
1 TAGATTTAATGTTTTTGGTTGTATTTTTTATGCTACATTTGC
51565924 AGTTTTTGGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.19, C:0.07, G:0.17, T:0.57
Consensus pattern (42 bp):
TAGATTTAATGTTTTTGGTTGTATTTTTTATGCTACATTTGC
Found at i:51565953 original size:31 final size:31
Alignment explanation
Indices: 51565911--51565976 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
51565901 TGTATTTTTT
*
51565911 ATGCTACATTTGCAGTTTTTGGTTAGATTTC
1 ATGCTACATTTGCAGTTTTTGGTTAGATTTA
* * *
51565942 ATGCTATATTTGCTGTTTTTGGTTGGATTTA
1 ATGCTACATTTGCAGTTTTTGGTTAGATTTA
51565973 ATGC
1 ATGC
51565977 AGGAAGGGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.18, C:0.11, G:0.21, T:0.50
Consensus pattern (31 bp):
ATGCTACATTTGCAGTTTTTGGTTAGATTTA
Found at i:51567120 original size:13 final size:13
Alignment explanation
Indices: 51567102--51567127 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51567092 TTTTTTAATA
51567102 TTATTTAAATTTT
1 TTATTTAAATTTT
51567115 TTATTTAAATTTT
1 TTATTTAAATTTT
51567128 ATAATTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TTATTTAAATTTT
Found at i:51567161 original size:21 final size:21
Alignment explanation
Indices: 51567090--51567163 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 21
51567080 TGTTAATTTC
*
51567090 ATTTTTTTAATATTATTTA-A
1 ATTTTTTTAATATTTTTTATA
* **
51567110 A-TTTTTTATTTAAATTTTATA
1 ATTTTTTTA-ATATTTTTTATA
**
51567131 ATTTAATTAATATTTTTTATA
1 ATTTTTTTAATATTTTTTATA
51567152 ATTTTTTTAATA
1 ATTTTTTTAATA
51567164 ATAGCCGATA
Statistics
Matches: 40, Mismatches: 11, Indels: 5
0.71 0.20 0.09
Matches are distributed among these distances:
19 7 0.17
20 7 0.17
21 21 0.52
22 5 0.12
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
ATTTTTTTAATATTTTTTATA
Found at i:51569205 original size:29 final size:29
Alignment explanation
Indices: 51569166--51569236 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
51569156 ATCATCTTGT
* *
51569166 CAAAATAATTTTTTCAGAACACATCA-TGG
1 CAAAATTATTTTTTCAAAACACAT-ATTGG
* * *
51569195 CAAATTTATTTTTTCAAAACCCATATTGT
1 CAAAATTATTTTTTCAAAACACATATTGG
51569224 CAAAATTATTTTT
1 CAAAATTATTTTT
51569237 CCTTGAACAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 1 0.03
29 34 0.97
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.41
Consensus pattern (29 bp):
CAAAATTATTTTTTCAAAACACATATTGG
Found at i:51569386 original size:65 final size:65
Alignment explanation
Indices: 51569268--51569538 Score: 400
Period size: 65 Copynumber: 4.2 Consensus size: 65
51569258 TAAAAAAATT
* * * *
51569268 AAACCTTAAACAATTAAAAACCTAATACCCTAATTTAATTTTTTCTAATCCCTAATCAAACCCAA
1 AAACCCTAAACAATTAAAAACATAATACCCTAATTTAATTTTTCCTAAACCCTAATCAAACCCAA
* *
51569333 AAACCCTAAACAATTAAAAAAATAATACCCTAATTTAAATTTTCCTAAACCCTAATCAAACCCCA
1 AAACCCTAAACAATTAAAAACATAATACCCTAATTTAATTTTTCCTAAACCCTAATCAAA-CCCA
51569398 A
65 A
* * **
51569399 AAA-CCTAAACAATTAAAAACCTAATACCCTAATTTAATTTTTCCTAAACCCTAATCAAGCTGAA
1 AAACCCTAAACAATTAAAAACATAATACCCTAATTTAATTTTTCCTAAACCCTAATCAAACCCAA
* * *
51569463 AAACCCTAAACAATTAAAAACATAATACCCTAATTTAATTTTTCATAAACCCTAATCAAATCTAA
1 AAACCCTAAACAATTAAAAACATAATACCCTAATTTAATTTTTCCTAAACCCTAATCAAACCCAA
*
51569528 AAAACCTAAAC
1 AAACCCTAAAC
51569539 CTAGGCCATA
Statistics
Matches: 185, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
64 6 0.03
65 171 0.92
66 8 0.04
ACGTcount: A:0.48, C:0.24, G:0.01, T:0.27
Consensus pattern (65 bp):
AAACCCTAAACAATTAAAAACATAATACCCTAATTTAATTTTTCCTAAACCCTAATCAAACCCAA
Found at i:51571814 original size:13 final size:14
Alignment explanation
Indices: 51571791--51571820 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
51571781 TAGGGATTTA
51571791 CAATATTACATAAT
1 CAATATTACATAAT
51571805 CAAT-TTACATAAT
1 CAATATTACATAAT
51571818 CAA
1 CAA
51571821 ATACAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (14 bp):
CAATATTACATAAT
Found at i:51571917 original size:33 final size:33
Alignment explanation
Indices: 51571877--51571980 Score: 117
Period size: 33 Copynumber: 3.1 Consensus size: 33
51571867 TTAGTTTCTC
51571877 TATTTATCAAGATAGTTAATGTTGTCATATCTT
1 TATTTATCAAGATAGTTAATGTTGTCATATCTT
*
51571910 TATTTATCAAGATTAGTTTCTAA-GATTAGT--T-TCTC
1 TATTTATCAAGA-TAG--T-TAATG-TT-GTCATATCTT
51571945 TATTTATCAAGATAGTTAATGTTGTCATATCTT
1 TATTTATCAAGATAGTTAATGTTGTCATATCTT
51571978 TAT
1 TAT
51571981 CATTAGGCCA
Statistics
Matches: 59, Mismatches: 2, Indels: 20
0.73 0.02 0.25
Matches are distributed among these distances:
30 2 0.03
31 5 0.08
32 3 0.05
33 18 0.31
34 6 0.10
35 15 0.25
36 3 0.05
37 5 0.08
38 2 0.03
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.49
Consensus pattern (33 bp):
TATTTATCAAGATAGTTAATGTTGTCATATCTT
Found at i:51571936 original size:13 final size:13
Alignment explanation
Indices: 51571918--51571943 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51571908 TTTATTTATC
51571918 AAGATTAGTTTCT
1 AAGATTAGTTTCT
51571931 AAGATTAGTTTCT
1 AAGATTAGTTTCT
51571944 CTATTTATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
AAGATTAGTTTCT
Found at i:51574743 original size:18 final size:19
Alignment explanation
Indices: 51574720--51574757 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
51574710 TAAATATATT
*
51574720 ATTCAAGTCAA-TAATTAA
1 ATTCAAGTAAATTAATTAA
*
51574738 ATTCAATTAAATTAATTAA
1 ATTCAAGTAAATTAATTAA
51574757 A
1 A
51574758 AGACTGTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.37
Consensus pattern (19 bp):
ATTCAAGTAAATTAATTAA
Found at i:51578900 original size:22 final size:22
Alignment explanation
Indices: 51578860--51578915 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
51578850 AATAAAATTG
*
51578860 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
51578880 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
51578902 TATTAATAATTTAT
1 AAATAATAAATTAT
51578916 TATATGATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:51581417 original size:20 final size:21
Alignment explanation
Indices: 51581389--51581427 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
51581379 TTTGTTTTAT
*
51581389 TATTACTATTTATT-TTTAAA
1 TATTACTATATATTATTTAAA
*
51581409 TATTTCTATATATTATTTA
1 TATTACTATATATTATTTA
51581428 TTTCAACTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
TATTACTATATATTATTTAAA
Found at i:51581812 original size:27 final size:26
Alignment explanation
Indices: 51581729--51581808 Score: 88
Period size: 28 Copynumber: 3.0 Consensus size: 26
51581719 TTGTCTTTAA
*
51581729 ATTAATTGTTTTAAATCATTTTATAT
1 ATTAATTATTTTAAATCATTTTATAT
* * **
51581755 ATTATTTTATTTTAAAATCGTTTTGCAT
1 ATTA-ATTATTTT-AAATCATTTTATAT
*
51581783 ATTAATTATTTTAAATTATTTTATAT
1 ATTAATTATTTTAAATCATTTTATAT
51581809 TATTGCCATT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
26 14 0.33
27 13 0.31
28 15 0.36
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (26 bp):
ATTAATTATTTTAAATCATTTTATAT
Found at i:51582739 original size:23 final size:22
Alignment explanation
Indices: 51582710--51582756 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
51582700 ACGCACAGTG
*
51582710 TACGCATACTACGCACGCTGAAA
1 TACGCATACTACGCACACT-AAA
*
51582733 TACGCATATTACGCACACTAAA
1 TACGCATACTACGCACACTAAA
51582755 TA
1 TA
51582757 TTAGAAAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.38, C:0.28, G:0.13, T:0.21
Consensus pattern (22 bp):
TACGCATACTACGCACACTAAA
Found at i:51586804 original size:64 final size:64
Alignment explanation
Indices: 51586622--51586805 Score: 176
Period size: 64 Copynumber: 2.8 Consensus size: 64
51586612 ATATAGTTCG
* * * * *
51586622 GCTCTCTTGTAC-ACATGGTGAACACTTAGTATCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACA-TATATCCCGT
51586684 A
64 A
* * * * * * * *
51586685 GCTCTTTTTTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACATAGTATCACCCATGCGACCTAGCTACATATATCCCG
51586750 TA
63 TA
*
51586752 GTTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
51586806 CATAATGTAT
Statistics
Matches: 94, Mismatches: 21, Indels: 11
0.75 0.17 0.09
Matches are distributed among these distances:
62 1 0.01
63 16 0.17
64 28 0.30
66 21 0.22
67 26 0.28
68 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.32
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:51588755 original size:20 final size:22
Alignment explanation
Indices: 51588715--51588756 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
51588705 TGTTTCGACA
*
51588715 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
51588737 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
51588757 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:51589348 original size:19 final size:20
Alignment explanation
Indices: 51589324--51589369 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
51589314 CATCTAAACA
51589324 CCAGAAAA-TATTAGC-TTTT
1 CCAGAAAAGT-TTAGCATTTT
*
51589343 CCAGAAAAGTTTATCATTTT
1 CCAGAAAAGTTTAGCATTTT
51589363 CCAGAAA
1 CCAGAAA
51589370 TCATTTTCCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (20 bp):
CCAGAAAAGTTTAGCATTTT
Found at i:51589374 original size:14 final size:13
Alignment explanation
Indices: 51589355--51589391 Score: 56
Period size: 14 Copynumber: 2.7 Consensus size: 13
51589345 AGAAAAGTTT
51589355 ATCATTTTCCAGAA
1 ATCATTTTCC-GAA
51589369 ATCATTTTCCGAA
1 ATCATTTTCCGAA
51589382 AGTCATTTTC
1 A-TCATTTTC
51589392 AATGAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 4 0.18
14 18 0.82
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (13 bp):
ATCATTTTCCGAA
Found at i:51592881 original size:30 final size:30
Alignment explanation
Indices: 51592828--51592884 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
51592818 ACAGCCATGC
* **
51592828 CACACGGGCATGTGGCTTTCCCGTGTGACT
1 CACACGGGCATGTGGATCACCCGTGTGACT
51592858 CACACGGGCATGTGGATCACCCGTGTG
1 CACACGGGCATGTGGATCACCCGTGTG
51592885 GAAGTGCTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.23
Consensus pattern (30 bp):
CACACGGGCATGTGGATCACCCGTGTGACT
Found at i:51594744 original size:6 final size:6
Alignment explanation
Indices: 51594727--51594758 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
51594717 CTTCAAAAAT
*
51594727 AAATAA AGATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AA
51594759 TAGATGGACT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:51596579 original size:24 final size:24
Alignment explanation
Indices: 51596551--51596600 Score: 61
Period size: 23 Copynumber: 2.1 Consensus size: 24
51596541 AGAAATAGGG
51596551 AGAAAAG-AGGAGGGAAGAAAAAA-A
1 AGAAAAGAAGGA-GGAA-AAAAAAGA
51596575 AG-AAAGAAGGAGGAAAAAAAAGA
1 AGAAAAGAAGGAGGAAAAAAAAGA
51596598 AGA
1 AGA
51596601 GACAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
22 6 0.26
23 11 0.48
24 6 0.26
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (24 bp):
AGAAAAGAAGGAGGAAAAAAAAGA
Found at i:51603796 original size:8 final size:8
Alignment explanation
Indices: 51603785--51603829 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
51603775 ACAAAAGTAC
51603785 AAAAAAAT
1 AAAAAAAT
51603793 AAAAAAAT
1 AAAAAAAT
51603801 AAATAAAA-
1 AAA-AAAAT
*
51603809 AAGAAGAAT
1 AA-AAAAAT
51603818 AAAAAAAT
1 AAAAAAAT
51603826 AAAA
1 AAAA
51603830 CAAAGGTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
8 25 0.78
9 7 0.22
ACGTcount: A:0.84, C:0.00, G:0.04, T:0.11
Consensus pattern (8 bp):
AAAAAAAT
Done.