Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 158 of 352
Found at i:51603818 original size:13 final size:12
Alignment explanation
Indices: 51603785--51603828 Score: 56
Period size: 12 Copynumber: 3.7 Consensus size: 12
51603775 ACAAAAGTAC
51603785 AAAA-AAATAAA
1 AAAATAAATAAA
51603796 AAAATAAATAAA
1 AAAATAAATAAA
51603808 AAAGA-AGAATAAA
1 AAA-ATA-AATAAA
51603821 AAAATAAA
1 AAAATAAA
51603829 ACAAAGGTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
11 4 0.14
12 14 0.48
13 11 0.38
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.11
Consensus pattern (12 bp):
AAAATAAATAAA
Found at i:51604375 original size:23 final size:22
Alignment explanation
Indices: 51604343--51604390 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
51604333 AATCAAATCC
*
51604343 AAAATAAAAAAAATGAATCAAAA
1 AAAATAAAAAAAATCAAT-AAAA
* *
51604366 AAAATCAAAAAGATCAATAAAA
1 AAAATAAAAAAAATCAATAAAA
51604388 AAA
1 AAA
51604391 GAAAAGAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.77, C:0.06, G:0.04, T:0.12
Consensus pattern (22 bp):
AAAATAAAAAAAATCAATAAAA
Found at i:51606083 original size:27 final size:27
Alignment explanation
Indices: 51606052--51606156 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
51606042 CTGCCAGAAA
** *
51606052 AGATAATGTGATAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
51606079 AGATAATCGTGGCAGAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
* *
51606106 AAAAATATGTGGCAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
*
51606133 AGATAATTGTGGCATAGCCACCAG
1 AGATAA-TGTGGCAGAGCCACCAG
51606157 GACGCTTCCT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.02
27 49 0.74
28 16 0.24
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:51606100 original size:28 final size:28
Alignment explanation
Indices: 51606064--51606156 Score: 120
Period size: 27 Copynumber: 3.4 Consensus size: 28
51606054 ATAATGTGAT
* *
51606064 AGAGTCACCAGATACAGATAATCGTGGC
1 AGAGCCACCAGATACAGATAATTGTGGC
*
51606092 AGAGCCACCAGA-ACA-AAAATATGTGGC
1 AGAGCCACCAGATACAGATAAT-TGTGGC
51606119 AGAGCCACCAGAT-CAGATAATTGTGGC
1 AGAGCCACCAGATACAGATAATTGTGGC
*
51606146 ATAGCCACCAG
1 AGAGCCACCAG
51606157 GACGCTTCCT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.07
27 38 0.67
28 15 0.26
ACGTcount: A:0.38, C:0.24, G:0.24, T:0.15
Consensus pattern (28 bp):
AGAGCCACCAGATACAGATAATTGTGGC
Found at i:51613921 original size:27 final size:26
Alignment explanation
Indices: 51613886--51613997 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
51613876 AGCATGGCTG
* *
51613886 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
51613912 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
51613940 CCAGAACAAAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
51613967 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
51613994 CCAG
1 CCAG
51613998 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.69
28 17 0.23
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:51620300 original size:44 final size:44
Alignment explanation
Indices: 51620252--51621080 Score: 325
Period size: 44 Copynumber: 18.7 Consensus size: 44
51620242 AACCACCAGC
*
51620252 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATAATTATAGT
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATGATTATAGT
* * * * *
51620296 CTTATCTTCTTGAGGTAGCAAGGAAACAGACTAAAGATTGTAGGT
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATGATTATA-GT
* * ** * *
51620341 CTTATC-TCCTTGAGATAGC-AGTGGAGCAGATCGAA-GACGACAAAT
1 CTTATCTTCC-TGAGGTAGCAAG-GGAGCAGA-CTAATGATTA-TAGT
** * * * * ** * *
51620386 CTTATCTTCCCAAGGTAGTAGGGGAGCAGA-T-TTCAGCCACCAGC
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATGA-TTA-TAGT
51620430 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATGATTATAGT
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATGATTATAGT
* *
51620474 CTTATCTTCCTGAGGTAGCAAGGGATCAGACTGAA-GATTGTAGAT
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACT-AATGATTATAG-T
* * * * *** *
51620519 CTTATCTCCCT-AAGTAG-TAGTGGAGCAGATCGAA-GATGGCGAAT
1 CTTATCTTCCTGAGGTAGCAAG-GGAGCAGA-CTAATGAT-TATAGT
* * * * * * *
51620563 CTTATCTT-TTCGAGGTAGCAGGGGAGCAGA-T-TTCAGTCACCAGC
1 CTTATCTTCCT-GAGGTAGCAAGGGAGCAGACTAATGA-TTA-TAGT
*
51620607 CTTATCTTCCTGAGGTAGCAAGGGAGCAGGCTAATGATTATAGT
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATGATTATAGT
* * *
51620651 CTTATCTTCCTAAGGTAGCAAGGGAGCAGATTGAA-GATTGTAGAT
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACT-AATGATTATAG-T
* * * * * * *
51620696 CTTATCTCCCT-AAGTAG-TAGTGGAGCAGATTGAAGGCGA-CA-AAT
1 CTTATCTTCCTGAGGTAGCAAG-GGAGCAGACT-AA--TGATTATAGT
* * * * * ** * *
51620740 CTTATCTTCCCGAGGTAGCAGGGGAGCA-AAT-TTCAGCCACCAGC
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATGA-TTA-TAGT
*
51620784 CTTATCTTCCTGAGGTAGCAAGGGAAAGCAGGCTAATGATTATAGT
1 CTTATCTTCCTGAGGTAGCAAGGG--AGCAGACTAATGATTATAGT
*
51620830 CTTA-CTTCCTGAGGTAGCAAGGGAGCAGACTGAA-GATTGTAGAT
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACT-AATGATTATAG-T
* * * * * *** *
51620874 CTTATCTCCCT-AAGCAGTAATGGG-GCAGATCGAA-GACGGTGAAT
1 CTTATCTTCCTGAGGTAGCAA-GGGAGCAGA-CTAATGATTAT-AGT
* * ** * *
51620918 CTTATCTTCCCGAGGTAGC-AGGGAAGCAAATCCT-A-G-CCACCAGC
1 CTTATCTTCCTGAGGTAGCAAGGG-AGCAGA--CTAATGATTA-TAGT
* *
51620962 CTTATCTTCCTGAGGTAGCAAGGGAGCAGGCTAATGATTGTAGT
1 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATGATTATAGT
* * * **
51621006 CTTATCTTTCC-GAGTTAGCAAGGAAACAGACTGAA-GATGGTAGAT
1 CTTATC-TTCCTGAGGTAGCAAGGGAGCAGACT-AATGATTATAG-T
* * *
51621051 CTTATCTCCCTGAAGTTGC-AGTGGAGCAGA
1 CTTATCTTCCTGAGGTAGCAAG-GGAGCAGA
51621081 TCAAAGCCAC
Statistics
Matches: 581, Mismatches: 143, Indels: 121
0.69 0.17 0.14
Matches are distributed among these distances:
40 1 0.00
42 4 0.01
43 25 0.04
44 350 0.60
45 170 0.29
46 25 0.04
47 4 0.01
48 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (44 bp):
CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATGATTATAGT
Found at i:51620323 original size:178 final size:178
Alignment explanation
Indices: 51619979--51621082 Score: 1445
Period size: 178 Copynumber: 6.2 Consensus size: 178
51619969 AGTGAATTCA
* * * * *
51619979 TAGATCTTATCTCCCTGAGATAGTATTGGAGCAGATCAAAGACGGTGAATCTTGTCTCCCCGAGG
1 TAGATCTTATCTCCCTGAGATAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGG
* ** * * *
51620044 TAGCAGGGGAGCAAATTTTTGGCCACCAGCCTTAAC-TCTCTGAGGTAGCAAGAGAGCA-AGTTG
66 TAGCAGGGGAGCAGA-TTTCAGCCACCAGCCTTATCTTC-CTGAGGTAGCAAGGGAGCAGA-CT-
* * * * *
51620107 AA-GATTGTAGTGTTATCTTCTTGAGGTAGCAAGGAAACAGACTAAATATTG
127 AATGATTATAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAGATTG
* * * * *
51620158 TAGGTCTTATCTCCTTGAGATAGCAATGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGG
1 TAGATCTTATCTCCCTGAGATAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGG
* * *
51620223 TAGTAGGGGAGCAGATTTCAACCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATA
66 TAGCAGGGGAGCAGATTTCAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATG
* *
51620288 ATTATAGTCTTATCTTCTTGAGGTAGCAAGGAAACAGACTAAAGATTG
131 ATTATAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAGATTG
* * * * * *
51620336 TAGGTCTTATCTCCTTGAGATAGCAGTGGAGCAGATCGAAGACGACAAATCTTATCTTCCCAAGG
1 TAGATCTTATCTCCCTGAGATAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGG
*
51620401 TAGTAGGGGAGCAGATTTCAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATG
66 TAGCAGGGGAGCAGATTTCAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATG
* *
51620466 ATTATAGTCTTATCTTCCTGAGGTAGCAAGGGATCAGACTGAAGATTG
131 ATTATAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAGATTG
* * **
51620514 TAGATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTTCGAGG
1 TAGATCTTATCTCCCTGAGATAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGG
* *
51620578 TAGCAGGGGAGCAGATTTCAGTCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGGCTAATG
66 TAGCAGGGGAGCAGATTTCAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATG
* * * *
51620643 ATTATAGTCTTATCTTCCTAAGGTAGCAAGGGAGCAGATTGAAGATTG
131 ATTATAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAGATTG
* * * * *
51620691 TAGATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATTGAAGGCGACAAATCTTATCTTCCCGAGG
1 TAGATCTTATCTCCCTGAGATAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGG
* *
51620755 TAGCAGGGGAGCAAATTTCAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAAAGCAGGCTAA
66 TAGCAGGGGAGCAGATTTCAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGG--AGCAGACTAA
* *
51620820 TGATTATAGTCTTA-CTTCCTGAGGTAGCAAGGGAGCAGACTGAAGATTG
129 TGATTATAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAGATTG
* * * * *
51620869 TAGATCTTATCTCCCTAAG-CAGTAATGGGGCAGATCGAAGACGGTGAATCTTATCTTCCCGAGG
1 TAGATCTTATCTCCCTGAGATAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGG
* * * *
51620933 TAGCAGGGAAGCA-AATCCTAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGGCTAAT
66 TAGCAGGGGAGCAGATTTC-AGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAAT
* * *
51620997 GATTGTAGTCTTATCTTTCC-GAGTTAGCAAGGAAACAGACTGAAGATGG
130 GATTATAGTCTTATC-TTCCTGAGGTAGCAAGGAAACAGACTGAAGATTG
* *
51621046 TAGATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATC
1 TAGATCTTATCTCCCTGAGA-TAGTAGTGGAGCAGATC
51621083 AAAGCCACAA
Statistics
Matches: 836, Mismatches: 79, Indels: 21
0.89 0.08 0.02
Matches are distributed among these distances:
176 23 0.03
177 301 0.36
178 416 0.50
179 96 0.11
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (178 bp):
TAGATCTTATCTCCCTGAGATAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGG
TAGCAGGGGAGCAGATTTCAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATG
ATTATAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAGATTG
Found at i:51620567 original size:133 final size:133
Alignment explanation
Indices: 51620430--51620688 Score: 305
Period size: 133 Copynumber: 1.9 Consensus size: 133
51620420 AGCCACCAGC
* * * *
51620430 CTTATCTTC-CTGAGGTAGCAAGGGAGCAGACTAATGA-TTA-TAGTCTTATCTTCCTGAGGTAG
1 CTTATCTTCTC-GAGGTAGCAAGGGAGCAGA-T-ATCAGTCACCAGCCTTATCTTCCTGAGGTAG
* * *
51620492 CAAGGGATCAGACTGAA-GATTGTAGATCTTATCTCCCTAA-GTAG-TAGTGGAGCAGATCGAAG
63 CAAGGGAGCAGACT-AATGATTATAG-TCTTATCTCCCTAAGGTAGCAAG-GGAGCAGATCGAAG
51620554 ATGGCGAAT
125 ATGGCGAAT
* * *
51620563 CTTATCTTTTCGAGGTAGCAGGGGAGCAGATTTCAGTCACCAGCCTTATCTTCCTGAGGTAGCAA
1 CTTATCTTCTCGAGGTAGCAAGGGAGCAGATATCAGTCACCAGCCTTATCTTCCTGAGGTAGCAA
* * *
51620628 GGGAGCAGGCTAATGATTATAGTCTTATCTTCCTAAGGTAGCAAGGGAGCAGATTGAAGAT
66 GGGAGCAGACTAATGATTATAGTCTTATCTCCCTAAGGTAGCAAGGGAGCAGATCGAAGAT
51620689 TGTAGATCTT
Statistics
Matches: 107, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
131 2 0.02
132 18 0.17
133 84 0.79
134 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (133 bp):
CTTATCTTCTCGAGGTAGCAAGGGAGCAGATATCAGTCACCAGCCTTATCTTCCTGAGGTAGCAA
GGGAGCAGACTAATGATTATAGTCTTATCTCCCTAAGGTAGCAAGGGAGCAGATCGAAGATGGCG
AAT
Found at i:51620649 original size:355 final size:355
Alignment explanation
Indices: 51619979--51621082 Score: 1504
Period size: 355 Copynumber: 3.1 Consensus size: 355
51619969 AGTGAATTCA
* * * *** * *
51619979 TAGATCTTATCTCCCTGAGATAGTATTGGAGCAGATCAAAGACGGTGAATCTTGTCTCCCCGAGG
1 TAGATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGACAAATCTTATCTTCCCGAGG
** * * *
51620044 TAGCAGGGGAGCAAATTTTTGGCCACCAGCCTTAAC-TCTCTGAGGTAGCAAGAGAGCA-AGTTG
66 TAGCAGGGGAGCAAA-TTTCAGCCACCAGCCTTATCTTC-CTGAGGTAGCAAGGGAGCAGA-CT-
* * * * * * *
51620107 AA-GATTGTAGTGTTATCTTCTTGAGGTAGCAAGGAAACAGACTAAATATTGTAGGTCTTATCTC
127 AATGATTATAGTCTTATCTTCCTGAGGTAGCAAGGGAACAGACTGAAGATTGTAGATCTTATCTC
* * * * *
51620171 CTTGAGATAGCAATGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGGAGCA
192 CCTAAG-TAGTAATGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAGCAGGGGAGCA
* * *
51620236 GATTTCAACCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATAATTATAGTCTTAT
256 GATTTCAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGGCTAATGATTATAGTCTTAT
*
51620301 CTTCTTGAGGTAGCAAGGAAACAGACTAAAGATTG
321 CTTCTTGAGGTAGCAAGGAAACAGACTGAAGATTG
* * *
51620336 TAGGTCTTATCTCCTTGAGATAGCAGTGGAGCAGATCGAAGACGACAAATCTTATCTTCCCAAGG
1 TAGATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGACAAATCTTATCTTCCCGAGG
* *
51620401 TAGTAGGGGAGCAGATTTCAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATG
66 TAGCAGGGGAGCAAATTTCAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATG
*
51620466 ATTATAGTCTTATCTTCCTGAGGTAGCAAGGGATCAGACTGAAGATTGTAGATCTTATCTCCCTA
131 ATTATAGTCTTATCTTCCTGAGGTAGCAAGGGAACAGACTGAAGATTGTAGATCTTATCTCCCTA
* * **
51620531 AGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTTCGAGGTAGCAGGGGAGCAGATTT
196 AGTAGTAATGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATTT
* *
51620596 CAGTCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGGCTAATGATTATAGTCTTATCTTCC
261 CAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGGCTAATGATTATAGTCTTATCTTCT
* * * *
51620661 TAAGGTAGCAAGGGAGCAGATTGAAGATTG
326 TGAGGTAGCAAGGAAACAGACTGAAGATTG
* * * *
51620691 TAGATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATTGAAGGCGACAAATCTTATCTTCCCGAGG
1 TAGATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGACAAATCTTATCTTCCCGAGG
*
51620755 TAGCAGGGGAGCAAATTTCAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAAAGCAGGCTAA
66 TAGCAGGGGAGCAAATTTCAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGG--AGCAGACTAA
*
51620820 TGATTATAGTCTTA-CTTCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGATCTTATCTCCC
129 TGATTATAGTCTTATCTTCCTGAGGTAGCAAGGGAACAGACTGAAGATTGTAGATCTTATCTCCC
* * * * *
51620884 TAAGCAGTAATGGGGCAGATCGAAGACGGTGAATCTTATCTTCCCGAGGTAGCAGGGAAGCA-AA
194 TAAGTAGTAATGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGAT
* *
51620948 TCCTAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGGCTAATGATTGTAGTCTTATCT
259 TTC-AGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGGCTAATGATTATAGTCTTATCT
* * *
51621013 T-TCCGAGTTAGCAAGGAAACAGACTGAAGATGG
323 TCT-TGAGGTAGCAAGGAAACAGACTGAAGATTG
*
51621046 TAGATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATC
1 TAGATCTTATCTCCCTGAGA-TAGCAGTGGAGCAGATC
51621083 AAAGCCACAA
Statistics
Matches: 658, Mismatches: 80, Indels: 19
0.87 0.11 0.03
Matches are distributed among these distances:
354 95 0.14
355 362 0.55
356 131 0.20
357 70 0.11
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (355 bp):
TAGATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGACAAATCTTATCTTCCCGAGG
TAGCAGGGGAGCAAATTTCAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAATG
ATTATAGTCTTATCTTCCTGAGGTAGCAAGGGAACAGACTGAAGATTGTAGATCTTATCTCCCTA
AGTAGTAATGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATTT
CAGCCACCAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAGGCTAATGATTATAGTCTTATCTTCT
TGAGGTAGCAAGGAAACAGACTGAAGATTG
Found at i:51620744 original size:133 final size:133
Alignment explanation
Indices: 51620473--51620767 Score: 312
Period size: 133 Copynumber: 2.2 Consensus size: 133
51620463 ATGATTATAG
* * *
51620473 TCTTATCTTCCTGAGGTAGCAAGGGATCAGACTGAAGATTGTAGATCTTATCTCCCTAAGTAGTA
1 TCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTGAAGATTATAGATCTTATCTCCCTAAGTAGAA
* ** * ** *
51620538 GTGGAGCAGATCGAAGATGGCGAATCTTATCTTTTCGAGGTAGCAGGGGAGCAGATTTCAGTCAC
66 GTGGAGCAGATCGAAGATGGAGAATCTTATCTTCCCGAAGTAGCAGGGGAGCAGATTGAAGGCAC
* *
51620603 CAG
131 AAA
* * *
51620606 CCTTATCTTCCTGAGGTAGCAAGGGAGCAGGCT-AATGATTATAG-TCTTATCTTCCTAAGGTAG
1 TCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTGAA-GATTATAGATCTTATCTCCCTAA-GTAG
* * * * *
51620669 CAAG-GGAGCAGATTGAAGATTGTAG-ATCTTATC-TCCCTAAGTAGTAGTGGAGCAGATTGAAG
64 -AAGTGGAGCAGATCGAAGA-TGGAGAATCTTATCTTCCCGAAGTAGCAGGGGAGCAGATTGAAG
51620731 GCGACAAA
127 GC-ACAAA
* *
51620739 TCTTATCTTCCCGAGGTAGCAGGGGAGCA
1 TCTTATCTTCCTGAGGTAGCAAGGGAGCA
51620768 AATTTCAGCC
Statistics
Matches: 134, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
132 37 0.28
133 92 0.69
134 5 0.04
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (133 bp):
TCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTGAAGATTATAGATCTTATCTCCCTAAGTAGAA
GTGGAGCAGATCGAAGATGGAGAATCTTATCTTCCCGAAGTAGCAGGGGAGCAGATTGAAGGCAC
AAA
Found at i:51621434 original size:13 final size:13
Alignment explanation
Indices: 51621416--51621441 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51621406 GGCCCATTAT
51621416 AAACCAAATTAAA
1 AAACCAAATTAAA
51621429 AAACCAAATTAAA
1 AAACCAAATTAAA
51621442 TAAAGTCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.15, G:0.00, T:0.15
Consensus pattern (13 bp):
AAACCAAATTAAA
Found at i:51628963 original size:10 final size:10
Alignment explanation
Indices: 51628950--51628974 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
51628940 TTCCCATACA
51628950 TTTCTCTCTC
1 TTTCTCTCTC
51628960 TTTCTCTCTC
1 TTTCTCTCTC
51628970 TTTCT
1 TTTCT
51628975 TTCATTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (10 bp):
TTTCTCTCTC
Found at i:51632808 original size:44 final size:43
Alignment explanation
Indices: 51632745--51632828 Score: 141
Period size: 44 Copynumber: 1.9 Consensus size: 43
51632735 ACATGTATCG
51632745 CATCCATAATGAACTCGGACCAAATCAACGAGCTCAAATGCTCA
1 CATCCATAATGAACTCGGACC-AATCAACGAGCTCAAATGCTCA
* *
51632789 CATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGC
1 CATCCATAATGAACTCGGACCAATCAACGAGCTCAAATGC
51632829 CATATATATC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 17 0.45
44 21 0.55
ACGTcount: A:0.36, C:0.31, G:0.15, T:0.18
Consensus pattern (43 bp):
CATCCATAATGAACTCGGACCAATCAACGAGCTCAAATGCTCA
Found at i:51633090 original size:14 final size:16
Alignment explanation
Indices: 51633058--51633094 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
51633048 ATTTACATAA
*
51633058 CATATATCACCTATTT
1 CATATATCACCTATGT
51633074 CATATATCA-CT-TGT
1 CATATATCACCTATGT
51633088 CATATAT
1 CATATAT
51633095 TATCATTTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 9 0.45
15 2 0.10
16 9 0.45
ACGTcount: A:0.32, C:0.22, G:0.03, T:0.43
Consensus pattern (16 bp):
CATATATCACCTATGT
Found at i:51633577 original size:20 final size:18
Alignment explanation
Indices: 51633540--51633590 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
51633530 CTATAACAAC
51633540 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
51633557 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
51633577 TTACAACTTTACAA
1 TCACAA-TTTACAA
51633591 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:51641606 original size:12 final size:12
Alignment explanation
Indices: 51641566--51641623 Score: 52
Period size: 12 Copynumber: 5.1 Consensus size: 12
51641556 TAAGATTAAG
51641566 AAAATAACAATA
1 AAAATAACAATA
*
51641578 AAAAGAAC--TA
1 AAAATAACAATA
51641588 AAAATAACAATA
1 AAAATAACAATA
*
51641600 AACATAA-ACATA
1 AAAATAACA-ATA
*
51641612 AACATAA-AATA
1 AAAATAACAATA
51641623 A
1 A
51641624 GAAGAAAAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
10 9 0.22
11 5 0.12
12 26 0.65
ACGTcount: A:0.72, C:0.10, G:0.02, T:0.16
Consensus pattern (12 bp):
AAAATAACAATA
Found at i:51641634 original size:6 final size:6
Alignment explanation
Indices: 51641625--51641671 Score: 76
Period size: 6 Copynumber: 7.5 Consensus size: 6
51641615 ATAAAATAAG
51641625 AAGAAA AAGAAAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAG
1 AAGAAA AAG--AAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAG
51641672 GAACAAATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 33 0.85
8 6 0.15
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:51646077 original size:15 final size:16
Alignment explanation
Indices: 51646047--51646080 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
51646037 TCAATCATGC
*
51646047 AAAAATAATAATGAAG
1 AAAAATAATAAAGAAG
51646063 AAAAATAA-AAAGAAG
1 AAAAATAATAAAGAAG
51646078 AAA
1 AAA
51646081 GAAAATGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (16 bp):
AAAAATAATAAAGAAG
Found at i:51646550 original size:4 final size:4
Alignment explanation
Indices: 51646507--51646558 Score: 52
Period size: 4 Copynumber: 12.0 Consensus size: 4
51646497 ATAACGTAAT
51646507 TAAA TAAA TGAAA TAATCA TAAA TAGAA T-AA TAGAA TAAA TAAA TAAA
1 TAAA TAAA T-AAA TAA--A TAAA TA-AA TAAA TA-AA TAAA TAAA TAAA
51646555 TAAA
1 TAAA
51646559 AATAAAATAG
Statistics
Matches: 42, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
3 3 0.07
4 24 0.57
5 11 0.26
6 4 0.10
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:51650064 original size:64 final size:64
Alignment explanation
Indices: 51649992--51650119 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
51649982 CTTTGGAAAA
*
51649992 CTCAAAAAATTTGTCATCAAAACAGGGGTCATACGCCTGTGTGGCTTGGGACACGCCTGTGTGG
1 CTCAAAAAATTTGTCATCAAAACAGGGGTCATACGCCTGTGTGGCTTGGGACACGCCCGTGTGG
*
51650056 CTCAAAAAATTTGTCATCAAAATAGGGGTCATACGCCTGTGTGGCTTGGGACACGCCCGTGTGG
1 CTCAAAAAATTTGTCATCAAAACAGGGGTCATACGCCTGTGTGGCTTGGGACACGCCCGTGTGG
51650120 GTAGGCCATG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (64 bp):
CTCAAAAAATTTGTCATCAAAACAGGGGTCATACGCCTGTGTGGCTTGGGACACGCCCGTGTGG
Found at i:51651983 original size:5 final size:5
Alignment explanation
Indices: 51651973--51652061 Score: 72
Period size: 5 Copynumber: 16.2 Consensus size: 5
51651963 TGAATCCTCC
51651973 TATTT TATTT TA-TT TATTCT TATTCT TATTTT TATTT TATTTT TATTTT
1 TATTT TATTT TATTT TATT-T TATT-T TA-TTT TATTT TA-TTT TA-TTT
* *
51652022 TCTTT TGACTTT TATTT TCATTT CAATTT TATTT TATTT T
1 TATTT T-A-TTT TATTT T-ATTT -TATTT TATTT TATTT T
51652062 GAAAGACATA
Statistics
Matches: 72, Mismatches: 4, Indels: 16
0.78 0.04 0.17
Matches are distributed among these distances:
4 4 0.06
5 31 0.43
6 31 0.43
7 6 0.08
ACGTcount: A:0.18, C:0.07, G:0.01, T:0.74
Consensus pattern (5 bp):
TATTT
Found at i:51652007 original size:12 final size:11
Alignment explanation
Indices: 51651973--51652061 Score: 85
Period size: 11 Copynumber: 8.0 Consensus size: 11
51651963 TGAATCCTCC
51651973 TATTTTA-TTT
1 TATTTTATTTT
*
51651983 TA-TTTATTCT
1 TATTTTATTTT
51651993 TATTCTTATTTT
1 TATT-TTATTTT
51652005 TATTTTATTTT
1 TATTTTATTTT
51652016 TATTTT-TCTTT
1 TATTTTAT-TTT
51652027 TGACTTTTATTTT
1 T-A-TTTTATTTT
* * *
51652040 CATTTCAATTT
1 TATTTTATTTT
51652051 TATTTTATTTT
1 TATTTTATTTT
51652062 GAAAGACATA
Statistics
Matches: 64, Mismatches: 8, Indels: 13
0.75 0.09 0.15
Matches are distributed among these distances:
9 4 0.06
10 7 0.11
11 33 0.52
12 12 0.19
13 7 0.11
14 1 0.02
ACGTcount: A:0.18, C:0.07, G:0.01, T:0.74
Consensus pattern (11 bp):
TATTTTATTTT
Found at i:51652018 original size:17 final size:17
Alignment explanation
Indices: 51651973--51652061 Score: 78
Period size: 17 Copynumber: 5.4 Consensus size: 17
51651963 TGAATCCTCC
51651973 TATTTTA-TTTTA--TT
1 TATTTTATTTTTATTTT
*
51651987 TATTCTTATTCTTATTTT
1 TATT-TTATTTTTATTTT
51652005 TATTTTATTTTTATTTT
1 TATTTTATTTTTATTTT
* *
51652022 TCTTTTGACTTTTATTTT
1 TATTTT-ATTTTTATTTT
* * *
51652040 CATTTCAATTTTA-TTT
1 TATTTTATTTTTATTTT
51652056 TATTTT
1 TATTTT
51652062 GAAAGACATA
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
14 4 0.07
15 3 0.05
16 11 0.18
17 23 0.38
18 19 0.32
ACGTcount: A:0.18, C:0.07, G:0.01, T:0.74
Consensus pattern (17 bp):
TATTTTATTTTTATTTT
Found at i:51652020 original size:6 final size:6
Alignment explanation
Indices: 51651985--51652061 Score: 61
Period size: 6 Copynumber: 13.3 Consensus size: 6
51651975 TTTTATTTTA
* * * * *
51651985 TTTATT CTTATT CTTATT TTTA-T TTTATT TTTATT TTTCTT TTGACT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* * *
51652032 TTTATT TTCA-T TTCAAT TTTA-T TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TT
51652062 GAAAGACATA
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
5 15 0.26
6 43 0.74
ACGTcount: A:0.17, C:0.08, G:0.01, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:51654989 original size:13 final size:13
Alignment explanation
Indices: 51654971--51654995 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51654961 TTAAATCAGT
51654971 TAATTAGTTTAAA
1 TAATTAGTTTAAA
51654984 TAATTAGTTTAA
1 TAATTAGTTTAA
51654996 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:51656019 original size:99 final size:99
Alignment explanation
Indices: 51655848--51656048 Score: 402
Period size: 99 Copynumber: 2.0 Consensus size: 99
51655838 GCAATAAAGC
51655848 ATTAAAATTCACTTGATATCAAAGTAATAGAAATATGACATAGCATCACATATGAACTTACCATA
1 ATTAAAATTCACTTGATATCAAAGTAATAGAAATATGACATAGCATCACATATGAACTTACCATA
51655913 CATGCAATATTTAAGCATTTAAAATAGAGTACAT
66 CATGCAATATTTAAGCATTTAAAATAGAGTACAT
51655947 ATTAAAATTCACTTGATATCAAAGTAATAGAAATATGACATAGCATCACATATGAACTTACCATA
1 ATTAAAATTCACTTGATATCAAAGTAATAGAAATATGACATAGCATCACATATGAACTTACCATA
51656012 CATGCAATATTTAAGCATTTAAAATAGAGTACAT
66 CATGCAATATTTAAGCATTTAAAATAGAGTACAT
51656046 ATT
1 ATT
51656049 GCATTACTCG
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
99 102 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (99 bp):
ATTAAAATTCACTTGATATCAAAGTAATAGAAATATGACATAGCATCACATATGAACTTACCATA
CATGCAATATTTAAGCATTTAAAATAGAGTACAT
Found at i:51662434 original size:47 final size:47
Alignment explanation
Indices: 51662383--51662757 Score: 581
Period size: 47 Copynumber: 8.0 Consensus size: 47
51662373 GATTTTATGA
51662383 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
51662430 GATGAATGTGAACATGCATATACGTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
51662477 GATGAATGTGAACTTGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
51662524 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
51662571 GATGAATGTGAACTTGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
51662618 GATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
** *
51662665 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAACGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * ** * *
51662712 GATGAATGTGGAA-GTGTATATATGTGGCAAAGCCGAATGGCTAATG
1 GATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATG
51662758 CGAAACATGT
Statistics
Matches: 300, Mismatches: 27, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 297 0.99
48 3 0.01
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:51662790 original size:46 final size:46
Alignment explanation
Indices: 51662731--51662867 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
51662721 GGAAGTGTAT
* *
51662731 ATATGTGGCAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
*
51662777 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
* * * *
51662823 ATATGAGGTAAAGCTGAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATG
51662868 TGTATATATA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:51674008 original size:45 final size:46
Alignment explanation
Indices: 51673896--51674020 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
51673886 AACCCGCCCC
* * * *
51673896 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
51673942 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
51673988 T-AGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51674021 TGCTCAACCA
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
45 32 0.43
46 43 0.57
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:51674474 original size:29 final size:29
Alignment explanation
Indices: 51674442--51674497 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
51674432 ATTTAATACG
51674442 AACTTTGGAAAAATTACACTTTTGCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCTA
* * *
51674471 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
51674498 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTGCCCTA
Found at i:51681502 original size:46 final size:46
Alignment explanation
Indices: 51681430--51681601 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
51681420 AACCCGCCCC
* *
51681430 TAAGTGAACTCGGACTCAACTTAACGAGCTCGGGCATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACATCCA
*
51681476 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCACATCCA
* * * *
51681524 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACATCCA
*
51681569 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
51681602 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 1 0.01
46 58 0.55
47 27 0.25
48 3 0.03
49 2 0.02
50 5 0.05
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACATCCA
Found at i:51681550 original size:93 final size:93
Alignment explanation
Indices: 51681435--51681605 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
51681425 GCCCCTAAGT
* *
51681435 GAACTCGGACTCAACTTAACGAGCTCGGGCATTCACATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCAA
51681500 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
51681528 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCAA
51681593 CGAGTTCGGATGC
66 CGAGTTCGGATGC
51681606 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:51684151 original size:92 final size:92
Alignment explanation
Indices: 51684033--51684203 Score: 240
Period size: 92 Copynumber: 1.8 Consensus size: 92
51684023 TATATGTGCT
*
51684033 GATGCCATGTCCCAAACATGGTCTTACACTAACAAATCTCAT-A-GT-CGATGCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGCCTTACACTAAC---TCTCATAATGTCCGATGCATGTCCCAGAC
* *
51684095 ATGTCTTCCACTAGCAGTTGCCTCAATGCC
63 ATATCTTACACTAGCAGTTGCCTCAATGCC
*
51684125 GATGCCATGTCCCAAACATGGCCTTACACTAGCTCTCATAATGTGTCCGATGCATGTCCCAGACA
1 GATGCCATGTCCCAAACATGGCCTTACACTAACTCTCATAA--TGTCCGATGCATGTCCCAGACA
51684190 TATCTTACACTAGC
64 TATCTTACACTAGC
51684204 TCACACAAGT
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
89 6 0.09
90 1 0.01
92 31 0.44
93 2 0.03
94 30 0.43
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (92 bp):
GATGCCATGTCCCAAACATGGCCTTACACTAACTCTCATAATGTCCGATGCATGTCCCAGACATA
TCTTACACTAGCAGTTGCCTCAATGCC
Found at i:51688863 original size:19 final size:17
Alignment explanation
Indices: 51688818--51688854 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
51688808 AATTTGTTAT
*
51688818 TACGGAAATATATTCGA
1 TACGAAAATATATTCGA
*
51688835 TACGAAAATATATTTGA
1 TACGAAAATATATTCGA
51688852 TAC
1 TAC
51688855 TTGAGAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (17 bp):
TACGAAAATATATTCGA
Found at i:51690885 original size:39 final size:38
Alignment explanation
Indices: 51690842--51690964 Score: 160
Period size: 39 Copynumber: 3.2 Consensus size: 38
51690832 GGACTTTAGC
* * *
51690842 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACC-TAAGT
*
51690881 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAACT
1 CCGGATATAATTCCAGCACATAGCCTGCGGA-CCTAAGT
* *
51690920 CTGGATATAATTCCAGCACATAGCTTGC-G-CCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTAAGT
51690956 CCGGATATA
1 CCGGATATA
51690965 CATCACTGAA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
36 14 0.19
38 1 0.01
39 58 0.77
40 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (38 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTAAGT
Found at i:51698089 original size:48 final size:47
Alignment explanation
Indices: 51697978--51698247 Score: 303
Period size: 46 Copynumber: 5.7 Consensus size: 47
51697968 TGATATGTGT
* * *
51697978 GCTAGTGTAAGACATGTCTGAGACATGCATCAGCCACAG-TATGAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAGATATGAAA
* * **
51698024 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-AGATATGAAA
* * * * *
51698072 GCCAGTGTAAGACATGTCTTGGACATGCATCAGCCACAG-TATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAGATATGAAA
51698118 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCACGATAT-ACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCA-GATATGA-AA
* * * *
51698166 GCTAGTGTAAGACCTATCTGGGACATGGCATGGGCCTCACTATATGAAA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCA-GATATGAAA
*
51698215 GGTAGTGTAAGATCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
51698248 AGCATCTTAA
Statistics
Matches: 189, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
46 70 0.37
47 6 0.03
48 66 0.35
49 29 0.15
50 18 0.10
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAGATATGAAA
Found at i:51698130 original size:94 final size:94
Alignment explanation
Indices: 51697981--51698247 Score: 333
Period size: 94 Copynumber: 2.8 Consensus size: 94
51697971 TATGTGTGCT
*
51697981 AGTGTAAGACATGTC-TGAGACATGCATCAGCCACAGTATGAAAGCCAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTCTTG-GACATGCATCAGCCACAGTATGAAAGCTAGTGTAAGACATGTCTGG
* **
51698045 GACATGCATCGGCTTCGA-GATATTTAAGCC
65 GACATGCATCGGCCTC-ACGATATACAAGCC
*
51698075 AGTGTAAGACATGTCTTGGACATGCATCAGCCACAGTATGAGAGCTAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTTGGACATGCATCAGCCACAGTATGAAAGCTAGTGTAAGACATGTCTGGG
*
51698140 ACATGCATCGGCCTCACGATATACAAGCT
66 ACATGCATCGGCCTCACGATATACAAGCC
* * * ** *
51698169 AGTGTAAGACCTATCTGGGACATGGCATGGGCCTCACTA-TATGAAAGGTAGTGTAAGATCATGT
1 AGTGTAAGACATGTCTTGGACAT-GCATCAG-C-CAC-AGTATGAAAGCTAGTGTAAGA-CATGT
51698233 CTGGGACATGGCATC
61 CTGGGACAT-GCATC
51698248 AGCATCTTAA
Statistics
Matches: 152, Mismatches: 13, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
93 1 0.01
94 103 0.68
95 7 0.05
96 1 0.01
97 20 0.13
98 15 0.10
99 5 0.03
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTTGGACATGCATCAGCCACAGTATGAAAGCTAGTGTAAGACATGTCTGGG
ACATGCATCGGCCTCACGATATACAAGCC
Found at i:51699455 original size:21 final size:20
Alignment explanation
Indices: 51699430--51699469 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
51699420 GTCATAATGG
*
51699430 CCACACGGGCATGTTGCCCTT
1 CCACACAGGCATG-TGCCCTT
*
51699451 CCACATAGGCATGTGCCCT
1 CCACACAGGCATGTGCCCT
51699470 GCTTCAAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.23
Consensus pattern (20 bp):
CCACACAGGCATGTGCCCTT
Found at i:51705830 original size:49 final size:49
Alignment explanation
Indices: 51705774--51705901 Score: 150
Period size: 49 Copynumber: 2.6 Consensus size: 49
51705764 TGTTGTGTGT
* * *
51705774 CAGTGTAAGACCTATCTAGGACATGGCTTCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
* * * * *
51705823 CAGTGTAAGACCTATTTGGGGCATGGCATCGGCCTCGCTATATGAAAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATAGATGAAAGC
*
51705872 CAGTGTAAGACCATGTCTGGGACATGGCAT
1 CAGTGTAAGACC-TATCTGGGACATGGCAT
51705902 TGGCATCTTA
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.02
49 51 0.77
50 14 0.21
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:51708815 original size:72 final size:72
Alignment explanation
Indices: 51708688--51708821 Score: 198
Period size: 72 Copynumber: 1.9 Consensus size: 72
51708678 TGCGCCCAGC
* * *
51708688 GCTAGTTGGATAAACCAACGAATAATTAGTGAGCCCAACTCTAGTTGGATATACCAATGATATTT
1 GCTAGTTGGATAAACCAACGAATAAATAGTGAGCCCAACTCTAGTTGAATATACCAACGATATTT
51708753 CCACCTA
66 CCACCTA
* * *
51708760 GCTAGTTGGATAAATCGACGAATAAATAGTGAGCCCAGCTCTAGTTAGAAT-TACCAACGATA
1 GCTAGTTGGATAAACCAACGAATAAATAGTGAGCCCAACTCTAGTT-GAATATACCAACGATA
51708822 CTTGCGTTCA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
72 52 0.95
73 3 0.05
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (72 bp):
GCTAGTTGGATAAACCAACGAATAAATAGTGAGCCCAACTCTAGTTGAATATACCAACGATATTT
CCACCTA
Found at i:51708861 original size:74 final size:72
Alignment explanation
Indices: 51708688--51708863 Score: 189
Period size: 72 Copynumber: 2.4 Consensus size: 72
51708678 TGCGCCCAGC
** * * *
51708688 GCTAGTTGGATAAACCAACGAATAATTAGTGAGCCCAACTCTAGTTGGATATACCAATGATATTT
1 GCTAGTTGGATAAACTGACGAATAAATAGTGAGCCCAACTCTAGTTGAATATACCAACGATATTT
51708753 CCACCTA
66 CCACCTA
*
51708760 GCTAGTTGGATAAA-TCGACGAATAAATAGTGAGCCCAGCTCTAGTTAGAAT-TACCAACGATAC
1 GCTAGTTGGATAAACT-GACGAATAAATAGTGAGCCCAACTCTAGTT-GAATATACCAACGATA-
* *
51708823 TTGCGTTCA-GT-
63 TT---TCCACCTA
*
51708834 GCTAGTCGGATAAACTGACGAATAAATAGT
1 GCTAGTTGGATAAACTGACGAATAAATAGT
51708864 TATTTATTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
72 51 0.58
73 5 0.06
74 27 0.31
75 2 0.02
76 3 0.03
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (72 bp):
GCTAGTTGGATAAACTGACGAATAAATAGTGAGCCCAACTCTAGTTGAATATACCAACGATATTT
CCACCTA
Found at i:51709272 original size:21 final size:21
Alignment explanation
Indices: 51709246--51709296 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
51709236 TCAAAGTTCA
51709246 CAAGTAAATATTTAAATAGTT
1 CAAGTAAATATTTAAATAGTT
51709267 CAAGTAAATATTTAAATAGTT
1 CAAGTAAATATTTAAATAGTT
*
51709288 TAAGCTAAA
1 CAAG-TAAA
51709297 GAATTATGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.49, C:0.06, G:0.10, T:0.35
Consensus pattern (21 bp):
CAAGTAAATATTTAAATAGTT
Found at i:51710097 original size:16 final size:16
Alignment explanation
Indices: 51710076--51710108 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
51710066 ACTCACACAT
51710076 TTAATTTCCATCTTCA
1 TTAATTTCCATCTTCA
51710092 TTAATTTCCATCTTCA
1 TTAATTTCCATCTTCA
51710108 T
1 T
51710109 CAACAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAATTTCCATCTTCA
Found at i:51715217 original size:46 final size:45
Alignment explanation
Indices: 51715158--51715425 Score: 210
Period size: 46 Copynumber: 5.8 Consensus size: 45
51715148 TATTTGGGCA
* *
51715158 TCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACG
* * * *
51715204 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAC---G
51715249 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACG
* * * * *
51715297 TCTGAACTCGTTGAGTTGAGTCTGAG-T---TTGTGAGATGTAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGGAAC---G
*
51715342 CATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACG
* * **
51715390 CCCGAGCTCGTT-AGTTGAGTCTGAGTTTGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51715426 GCGGGTTACA
Statistics
Matches: 178, Mismatches: 24, Indels: 41
0.73 0.10 0.17
Matches are distributed among these distances:
42 10 0.06
43 8 0.04
45 26 0.15
46 59 0.33
47 52 0.29
48 5 0.03
50 8 0.04
51 10 0.06
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACG
Found at i:51715264 original size:93 final size:93
Alignment explanation
Indices: 51715154--51715416 Score: 438
Period size: 93 Copynumber: 2.8 Consensus size: 93
51715144 CGGATATTTG
* *
51715154 GGCATCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
51715219 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCTGAGTTCGTGAGATGTAACTA
*
51715247 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
51715312 TTGAGTCTGAGTTTGTGAGATGTAACTA
66 TTGAGTCTGAGTTCGTGAGATGTAACTA
* * * *
51715340 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTT-AG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
51715404 TTGAGTCTGAGTT
66 TTGAGTCTGAGTT
51715417 TGCTTATGGG
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
92 15 0.09
93 145 0.91
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCTGAGTTCGTGAGATGTAACTA
Found at i:51715270 original size:47 final size:47
Alignment explanation
Indices: 51715204--51715372 Score: 186
Period size: 47 Copynumber: 3.6 Consensus size: 47
51715194 GATGCGAACG
51715204 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* * * *
51715251 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCA
* * *
51715297 TCTGAACTCGTTGAGTTGAGTCTGAGTTTGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* *
51715344 TCTGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
51715373 ACTTATGGAT
Statistics
Matches: 99, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 25 0.25
47 54 0.55
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:51721207 original size:40 final size:40
Alignment explanation
Indices: 51721113--51721257 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
51721103 TACTCGAATG
*
51721113 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* **
51721154 ACATCCGTACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
51721194 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
51721234 ATATCCGGGTTAAGACCCAAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
51721258 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.67
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:51727316 original size:19 final size:19
Alignment explanation
Indices: 51727292--51727331 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
51727282 ACTCTTGTGG
51727292 TCCGAATAAATATGACACC
1 TCCGAATAAATATGACACC
51727311 TCCGAATAAATATGACACC
1 TCCGAATAAATATGACACC
51727330 TC
1 TC
51727332 TCTCAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.28, G:0.10, T:0.23
Consensus pattern (19 bp):
TCCGAATAAATATGACACC
Found at i:51732055 original size:29 final size:29
Alignment explanation
Indices: 51731995--51732068 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
51731985 TAATCAACCG
* *
51731995 CGCACACTTAGTGCCGTGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
**
51732024 CGCACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
*
51732053 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
51732069 ATCTCTCAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 3 0.08
29 36 0.92
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:51733805 original size:27 final size:27
Alignment explanation
Indices: 51733774--51733836 Score: 126
Period size: 27 Copynumber: 2.3 Consensus size: 27
51733764 GAAGAATAAT
51733774 AAAACATCTCAGAAGAATAATGAATAC
1 AAAACATCTCAGAAGAATAATGAATAC
51733801 AAAACATCTCAGAAGAATAATGAATAC
1 AAAACATCTCAGAAGAATAATGAATAC
51733828 AAAACATCT
1 AAAACATCT
51733837 TAGATTTGTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.56, C:0.16, G:0.10, T:0.19
Consensus pattern (27 bp):
AAAACATCTCAGAAGAATAATGAATAC
Found at i:51736540 original size:93 final size:93
Alignment explanation
Indices: 51736381--51736580 Score: 256
Period size: 93 Copynumber: 2.2 Consensus size: 93
51736371 CGGCCATGTT
* * *
51736381 GCACGGCCGTGTCAATATTCGTTCGCCTCTCCAACACCCATGTATGGAGGCACACGCCCGTGTTA
1 GCACGGTCGTGTCAATATTCGTTAGCCTCTCCAACACCCATGTATGCAGGCACACGCCCGTGTTA
* *
51736446 TTTTGATAGGCTCGACCACGATCGGTGG
66 TTTTGACAGGCTCGACCACGATAGGTGG
* * * * * * **
51736474 GCACGGTCTTGTCAATCTTCGTTATCCTCTCCCACGCCCGTGTATGCAGGTGCACGCCCGTGTTA
1 GCACGGTCGTGTCAATATTCGTTAGCCTCTCCAACACCCATGTATGCAGGCACACGCCCGTGTTA
* *
51736539 TTTTGACAGGCTCGACCATGGTAGGTGG
66 TTTTGACAGGCTCGACCACGATAGGTGG
*
51736567 GCATGGTCGTGTCA
1 GCACGGTCGTGTCA
51736581 GACGCCCGTG
Statistics
Matches: 90, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
93 90 1.00
ACGTcount: A:0.17, C:0.29, G:0.27, T:0.27
Consensus pattern (93 bp):
GCACGGTCGTGTCAATATTCGTTAGCCTCTCCAACACCCATGTATGCAGGCACACGCCCGTGTTA
TTTTGACAGGCTCGACCACGATAGGTGG
Found at i:51747507 original size:42 final size:42
Alignment explanation
Indices: 51747448--51747565 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
51747438 TAGGGTTAGT
* * *
51747448 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATG
1 TGAGATTCCATGTAAGACCATATCTGGGATATGGCATCAATG
* * *
51747490 TGAGACTT-CTTGTAAGACCATAGCTGGGCTATTGGCATCAATG
1 TGAGA-TTCCATGTAAGACCATATCTGGGATA-TGGCATCAATG
* *
51747533 TGAGATTCCATGTAATACCTTATCTGGGATATG
1 TGAGATTCCATGTAAGACCATATCTGGGATATG
51747566 TCATTGGGAT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 29 0.45
43 35 0.55
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
TGAGATTCCATGTAAGACCATATCTGGGATATGGCATCAATG
Found at i:51748133 original size:19 final size:19
Alignment explanation
Indices: 51748109--51748150 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
51748099 CATTGAATGT
*
51748109 TGGCCTATAATGGTTATGA
1 TGGCCTATAATGATTATGA
*
51748128 TGGCCTATAATGATTATGT
1 TGGCCTATAATGATTATGA
51748147 TGGC
1 TGGC
51748151 TACTGATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.38
Consensus pattern (19 bp):
TGGCCTATAATGATTATGA
Found at i:51751348 original size:27 final size:27
Alignment explanation
Indices: 51751318--51751498 Score: 211
Period size: 27 Copynumber: 6.7 Consensus size: 27
51751308 AGTACTCCCA
* *
51751318 ATTTACAAAATTACCATTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
51751345 ATTTACAGAATTATCGTTTTACCCTCA
1 ATTTACAGAATTACCGTTTTACCCTCG
** *
51751372 ATTTTTAAAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
51751399 ATTTACAGAATTACCGTTTTATCCT-T
1 ATTTACAGAATTACCGTTTTACCCTCG
**
51751425 AGTTTACAGAATTACTATTTTACCCTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
*
51751453 ATTTACAGAATTACCGTTTTACCCTCA
1 ATTTACAGAATTACCGTTTTACCCTCG
** *
51751480 ATTTGTAAAATTACCGTTT
1 ATTTACAGAATTACCGTTT
51751499 ATAGAATTAC
Statistics
Matches: 128, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 126 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
ATTTACAGAATTACCGTTTTACCCTCG
Found at i:51751357 original size:54 final size:55
Alignment explanation
Indices: 51751310--51751494 Score: 252
Period size: 54 Copynumber: 3.4 Consensus size: 55
51751300 ATTACCAAAG
*
51751310 TACTCC-CAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTATCGTTT
1 TACTCCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
** *
51751364 TAC-CCTCAATTTTTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACTCCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * * *
51751418 TA-TCCTTAGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
1 TACTCCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
**
51751472 TAC-CCTCAATTTGTAAAATTACC
1 TACTCCTCAATTTACAAAATTACC
51751495 GTTTATAGAA
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
53 2 0.02
54 109 0.98
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (55 bp):
TACTCCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:51751499 original size:69 final size:69
Alignment explanation
Indices: 51751426--51751562 Score: 184
Period size: 69 Copynumber: 2.0 Consensus size: 69
51751416 TTTATCCTTA
* * * *
51751426 GTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTGTAAAAT
1 GTTTACAGAATTACTAGTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTATAAAAT
51751491 TACC
66 TACC
* * * * * *
51751495 GTTTATAGAATTACTGGTTTACCCTCGGTTTACAAAATTATCATTTTACCCTCGATTTATAGAAT
1 GTTTACAGAATTACTAGTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTATAAAAT
51751560 TAC
66 TAC
51751563 TATTTTACCC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
69 58 1.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (69 bp):
GTTTACAGAATTACTAGTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTATAAAAT
TACC
Found at i:51751525 original size:27 final size:25
Alignment explanation
Indices: 51751495--51751574 Score: 79
Period size: 27 Copynumber: 3.0 Consensus size: 25
51751485 TAAAATTACC
51751495 GTTTATAGAATTACTGGTTTACCCTCG
1 GTTTATAGAATTACT--TTTACCCTCG
* *
51751522 GTTTACAAAATTATCATTTTACCCTCG
1 GTTTATAGAATTA-C-TTTTACCCTCG
*
51751549 ATTTATAGAATTACTATTTTACCCTC
1 GTTTATAGAATTAC--TTTTACCCTC
51751575 AATTGTGAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 1 0.02
27 42 0.93
28 1 0.02
29 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.42
Consensus pattern (25 bp):
GTTTATAGAATTACTTTTACCCTCG
Found at i:51751532 original size:42 final size:42
Alignment explanation
Indices: 51751454--51751534 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
51751444 TTACCCTCGA
* **
51751454 TTTACAGAATTACCGTTTTACCCTCAATTTGTAAAATTACCG
1 TTTACAGAATTACCGGTTTACCCTCAATTTACAAAATTACCG
* * **
51751496 TTTATAGAATTACTGGTTTACCCTCGGTTTACAAAATTA
1 TTTACAGAATTACCGGTTTACCCTCAATTTACAAAATTA
51751535 TCATTTTACC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.40
Consensus pattern (42 bp):
TTTACAGAATTACCGGTTTACCCTCAATTTACAAAATTACCG
Found at i:51751615 original size:27 final size:27
Alignment explanation
Indices: 51751583--51751774 Score: 242
Period size: 27 Copynumber: 7.1 Consensus size: 27
51751573 TCAATTGTGA
*
51751583 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
51751610 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** *
51751637 AATTACTAAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
51751664 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**
51751691 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
51751718 AATTACCGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
51751745 AATTACCGAGATACCTTTGTGGGGTA-
1 AATTACCGAAATACCCTTGTAGGGTAG
51751771 AATT
1 AATT
51751775 TACCATTTTG
Statistics
Matches: 141, Mismatches: 24, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 4 0.03
27 137 0.97
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:51751778 original size:54 final size:54
Alignment explanation
Indices: 51751583--51751774 Score: 296
Period size: 54 Copynumber: 3.6 Consensus size: 54
51751573 TCAATTGTGA
51751583 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * *
51751637 AATTACTAAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* *
51751691 AATTATTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * * *
51751745 AATTACCGAGATACCTTTGTGGGGTA-AATT
1 AATTACTGAAATACCCTTGTAGGGTAGAATT
51751775 TACCATTTTG
Statistics
Matches: 125, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 4 0.03
54 121 0.97
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
Found at i:51752015 original size:27 final size:26
Alignment explanation
Indices: 51751977--51752059 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
51751967 CGGAGGAAGC
*
51751977 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
51752004 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
51752030 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
51752057 GTT
1 GTT
51752060 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:51752402 original size:27 final size:26
Alignment explanation
Indices: 51752372--51752441 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 26
51752362 GGTGGGTTTT
*
51752372 CCACATTATCTGATTCTGGTGGCTCTG
1 CCACA-TATCTGATTCTGGTGACTCTG
51752399 CCACAATATCTG-TATCTGGTGACTCTG
1 CCAC-ATATCTGAT-TCTGGTGACTCTG
*
51752426 TCACGATATCT-ATTCT
1 CCAC-ATATCTGATTCT
51752442 AGCAGCCATG
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
26 4 0.11
27 32 0.86
28 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (26 bp):
CCACATATCTGATTCTGGTGACTCTG
Found at i:51752570 original size:6 final size:6
Alignment explanation
Indices: 51752561--51752650 Score: 87
Period size: 6 Copynumber: 14.8 Consensus size: 6
51752551 TTGCATTCAC
* *
51752561 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
* *
51752610 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG GTTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
51752651 CATTTTGGTT
Statistics
Matches: 69, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
5 5 0.07
6 57 0.83
7 6 0.09
8 1 0.01
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:51752618 original size:24 final size:24
Alignment explanation
Indices: 51752561--51752650 Score: 135
Period size: 24 Copynumber: 3.7 Consensus size: 24
51752551 TTGCATTCAC
* *
51752561 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTTA-CTG
51752586 ATTCTGATTCTGATTCTGTTACTG
1 ATTCTGATTCTGATTCTGTTACTG
51752610 ATTCTGATTCTGATTCTGTTACTG
1 ATTCTGATTCTGATTCTGTTACTG
* *
51752634 ATTCTGGTTTTGATTCT
1 ATTCTGATTCTGATTCT
51752651 CATTTTGGTT
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
24 41 0.67
25 20 0.33
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.50
Consensus pattern (24 bp):
ATTCTGATTCTGATTCTGTTACTG
Found at i:51758440 original size:19 final size:19
Alignment explanation
Indices: 51758388--51758433 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
51758378 TGGCCATTGA
*
51758388 ATGTTGGCCTATAATGGTT
1 ATGTTGGCCTATGATGGTT
*
51758407 ATGATGGCCTATGATGGTT
1 ATGTTGGCCTATGATGGTT
51758426 ATGTTGGC
1 ATGTTGGC
51758434 TATTGATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.20, C:0.11, G:0.30, T:0.39
Consensus pattern (19 bp):
ATGTTGGCCTATGATGGTT
Found at i:51759589 original size:28 final size:28
Alignment explanation
Indices: 51759544--51759606 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
51759534 TCGTGCCATG
*
51759544 AAGGCATTCCTTTTCAGAGATAACCACA
1 AAGGCATTCCTTTCCAGAGATAACCACA
**
51759572 AAGGC-TTCCTTATCCAGAGATTGCCACA
1 AAGGCATTCCTT-TCCAGAGATAACCACA
51759600 AAGGCAT
1 AAGGCAT
51759607 CATTTTCATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 6 0.20
28 23 0.77
29 1 0.03
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (28 bp):
AAGGCATTCCTTTCCAGAGATAACCACA
Found at i:51759686 original size:29 final size:29
Alignment explanation
Indices: 51759626--51759814 Score: 95
Period size: 28 Copynumber: 6.6 Consensus size: 29
51759616 TAAGTACTCA
* **
51759626 CCACAAAGGCTTTCCTTT-TAGA-GTCTCA
1 CCACAAAGGCTTTCCTTTCCAGAGGT-TTG
*
51759654 CCACAAAGGCTTTCCCTTCCAGAGGTTTG
1 CCACAAAGGCTTTCCTTTCCAGAGGTTTG
* * *
51759683 CCACAATGGTTTTCCTTTAACA-A-GTTTG
1 CCACAAAGGCTTTCCTTT-CCAGAGGTTTG
* * *
51759711 CCA-AGAAGGCTTGCCTTTCTAGAGTTTTG
1 CCACA-AAGGCTTTCCTTTCCAGAGGTTTG
* * ** * *
51759740 CCACAAAGGATGT-CTTTTTATAGGTTCG
1 CCACAAAGGCTTTCCTTTCCAGAGGTTTG
* * ** * *
51759768 CCATAAAGGCTTGCCTTTTTAAAGTTTTG
1 CCACAAAGGCTTTCCTTTCCAGAGGTTTG
51759797 CCACAAAGG-TTGTCCTTT
1 CCACAAAGGCTT-TCCTTT
51759815 TACTGGTGTT
Statistics
Matches: 122, Mismatches: 30, Indels: 17
0.72 0.18 0.10
Matches are distributed among these distances:
27 2 0.02
28 58 0.48
29 57 0.47
30 5 0.04
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (29 bp):
CCACAAAGGCTTTCCTTTCCAGAGGTTTG
Found at i:51759756 original size:28 final size:28
Alignment explanation
Indices: 51759679--51759816 Score: 100
Period size: 28 Copynumber: 4.9 Consensus size: 28
51759669 CTTCCAGAGG
* * * *
51759679 TTTGCCACAATGGTTTTCCTTTAACAAG-
1 TTTGCCACAAAGGTTGTCTTTTTA-AAGT
* * *
51759707 TTTGCCA-AGAAGGCTTGCCTTTCTAGAGT
1 TTTGCCACA-AAGG-TTGTCTTTTTAAAGT
* * *
51759736 TTTGCCACAAAGGATGTCTTTTTATAGG
1 TTTGCCACAAAGGTTGTCTTTTTAAAGT
* * *
51759764 TTCGCCATAAAGGCTTGCCTTTTTAAAGT
1 TTTGCCACAAAGG-TTGTCTTTTTAAAGT
*
51759793 TTTGCCACAAAGGTTGTCCTTTTA
1 TTTGCCACAAAGGTTGTCTTTTTA
51759817 CTGGTGTTTT
Statistics
Matches: 83, Mismatches: 22, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
27 1 0.01
28 42 0.51
29 39 0.47
30 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (28 bp):
TTTGCCACAAAGGTTGTCTTTTTAAAGT
Found at i:51759815 original size:29 final size:29
Alignment explanation
Indices: 51759679--51759815 Score: 106
Period size: 29 Copynumber: 4.8 Consensus size: 29
51759669 CTTCCAGAGG
* * *
51759679 TTTGCCACAATGGTTTTCC-TTTAACAAG-
1 TTTGCCACAAAGGTTGTCCTTTTTA-AAGT
* *
51759707 TTTGCCA-AGAAGGCTTG-CCTTTCTAGAGT
1 TTTGCCACA-AAGG-TTGTCCTTTTTAAAGT
* * *
51759736 TTTGCCACAAAGGATGT-CTTTTTATAGG
1 TTTGCCACAAAGGTTGTCCTTTTTAAAGT
* *
51759764 TTCGCCATAAAGGCTTG-CCTTTTTAAAGT
1 TTTGCCACAAAGG-TTGTCCTTTTTAAAGT
51759793 TTTGCCACAAAGGTTGTCCTTTT
1 TTTGCCACAAAGGTTGTCCTTTT
51759816 ACTGGTGTTT
Statistics
Matches: 84, Mismatches: 16, Indels: 17
0.72 0.14 0.15
Matches are distributed among these distances:
27 1 0.01
28 38 0.45
29 44 0.52
30 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.39
Consensus pattern (29 bp):
TTTGCCACAAAGGTTGTCCTTTTTAAAGT
Found at i:51762719 original size:27 final size:27
Alignment explanation
Indices: 51762660--51762732 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
51762650 CATCTCATAA
* *
51762660 GGGCATATTAGTCATTTTACCATGTAT
1 GGGCATTTTAGTCATTTTACCATGTAG
*
51762687 GAGCATTTTAGTCATTTTACCATGTAG
1 GGGCATTTTAGTCATTTTACCATGTAG
* *
51762714 GGGCATTTCAATCATTTTA
1 GGGCATTTTAGTCATTTTA
51762733 TCAATTAGAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (27 bp):
GGGCATTTTAGTCATTTTACCATGTAG
Found at i:51764177 original size:39 final size:40
Alignment explanation
Indices: 51764132--51764356 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
51764122 GCTCCTCGTT
* * * *
51764132 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
51764172 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
51764211 CGAATGCCTTCGGGACTTAACCCGGATTTAGTACCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
51764251 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
51764291 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
51764332 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51764357 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
39 39 0.25
40 104 0.66
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51764365 original size:41 final size:41
Alignment explanation
Indices: 51764288--51764365 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
51764278 TTTGTATCTC
* * *
51764288 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
51764329 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
51764366 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:51773623 original size:45 final size:42
Alignment explanation
Indices: 51773556--51773663 Score: 119
Period size: 45 Copynumber: 2.5 Consensus size: 42
51773546 TTGACTTGAT
* * *
51773556 TATTCGGGCCTTTGAGCTTAGCAAACTATAATTCTGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATACTGGT--GA-AC
**
51773601 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATACTGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATACTGGTGAAC
51773643 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
51773664 ACAGGTGAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 33 0.59
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATACTGGTGAAC
Found at i:51784248 original size:38 final size:40
Alignment explanation
Indices: 51784148--51784331 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
51784138 TCGAATGATG
* * * * * *
51784148 TCCGGGCTAAGCCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCAAAGGCATTTGTGC-GAGTTACTAAA
* * *
51784188 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCAAAGGCATTTGTGCGAGTTACTAAA
*
51784228 TCC-GGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
* * *
51784266 TCCGGGTTCAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTA-AA
* *
51784307 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCAAAGGCATTTG
51784332 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 27 0.22
39 11 0.09
40 73 0.61
41 9 0.08
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
Found at i:51788174 original size:37 final size:37
Alignment explanation
Indices: 51788115--51788253 Score: 242
Period size: 37 Copynumber: 3.8 Consensus size: 37
51788105 AGCTCAGACG
* * *
51788115 AAATCTCCACACGAAGTTATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
51788152 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
51788189 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
51788226 AAATCTCCACACGTAGTCATCGAGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
51788254 TAGAGCTCGG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:51788450 original size:47 final size:47
Alignment explanation
Indices: 51788372--51788628 Score: 424
Period size: 47 Copynumber: 5.5 Consensus size: 47
51788362 CCCTTCGGGA
* * * * * * *
51788372 CTTATCATATTTATACACTTTCACATGCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51788419 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51788466 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51788513 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51788560 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51788607 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
51788629 TTGGCTGAAT
Statistics
Matches: 197, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 197 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51797981 original size:46 final size:46
Alignment explanation
Indices: 51797837--51798147 Score: 188
Period size: 46 Copynumber: 6.7 Consensus size: 46
51797827 TATGTATGCT
* * * *
51797837 AGTGTAAGACATGTCTAGAACATGCATCGGCCACATTATAAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCC
* ** * * *
51797883 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCATTGA-GACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACATTATGAGAGCC
* *
51797931 AGTGTATGACATGTCTGGGACATGCATCGGCTACATTATGAGAGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCC
** ** * * **
51797977 AGTGTAAGACCATGTCTGGGACATTATTATCGGCATTGA-GACGAGAGAT
1 AGTGTAAGA-CATGTCTGGGACA-T-GCATCGGC-TACATTATGAGAGCC
* * *
51798026 AGTGTAAGACATGTCTGGGACATGCA-C--CAACCTTAAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGA-G--AGCC
* * * * *
51798072 AGTGTATGACATGTATGGGACATGCATCGGCT--ATGA-GATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGA-GAGCC
*
51798116 AATGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
51798148 TACGAATATG
Statistics
Matches: 201, Mismatches: 47, Indels: 34
0.71 0.17 0.12
Matches are distributed among these distances:
43 4 0.02
44 10 0.05
45 16 0.08
46 68 0.34
47 43 0.21
48 35 0.17
49 23 0.11
50 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCC
Found at i:51797995 original size:94 final size:95
Alignment explanation
Indices: 51797834--51798051 Score: 330
Period size: 94 Copynumber: 2.3 Consensus size: 95
51797824 TTATATGTAT
* *
51797834 GCTAGTGTAAGACATGTCTAGAACATGCATCGGCCACATTATAAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATAAGAGCCAGTGTAAGACCATGTC
* *
51797899 TGGGACA-TGGCGTCGGCATTGAGACGAGA
66 TGGGACATTAGCATCGGCATTGAGACGAGA
* * * *
51797928 GCTAGTGTATGACATGTCTGGGACATGCATCGGCTACATTATGAGAGGCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATAAGAGCCAGTGTAAGACCATGTC
**
51797993 TGGGACATTATTATCGGCATTGAGACGAGA
66 TGGGACATTAGCATCGGCATTGAGACGAGA
*
51798023 GATAGTGTAAGACATGTCTGGGACATGCA
1 GCTAGTGTAAGACATGTCTGGGACATGCA
51798052 CCAACCTTAA
Statistics
Matches: 111, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
94 66 0.59
95 45 0.41
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (95 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATAAGAGCCAGTGTAAGACCATGTC
TGGGACATTAGCATCGGCATTGAGACGAGA
Found at i:51798075 original size:95 final size:94
Alignment explanation
Indices: 51797836--51798146 Score: 300
Period size: 94 Copynumber: 3.3 Consensus size: 94
51797826 ATATGTATGC
* * *
51797836 TAGTGTAAGACATGTCTAGAACATGCATCGGCCACATTATA-AGAGCCAGTGTAAGACCATGTCT
1 TAGTGTAAGACATGTCTGGGACATGCATC-GCAACATTA-AGAGAGCCAGTGTAAGACCATGTCT
* * *
51797900 GGGACA-TGGCGTCGGCATTGAGACGAGAGC
64 GGGACATTAGCATCGGCATTGAGACGAGAGA
* * * *
51797930 TAGTGTATGACATGTCTGGGACATGCATCGGCTACATTATGAGAGGCAGTGTAAGACCATGTCTG
1 TAGTGTAAGACATGTCTGGGACATGCATC-GCAACATTAAGAGAGCCAGTGTAAGACCATGTCTG
**
51797995 GGACATTATTATCGGCATTGAGACGAGAGA
65 GGACATTAGCATCGGCATTGAGACGAGAGA
* * *
51798025 TAGTGTAAGACATGTCTGGGACATGCA-C-CAACCTTAAGATGTAAGCCAGTGTATGA-CATGTA
1 TAGTGTAAGACATGTCTGGGACATGCATCGCAACATTAAGA-G--AGCCAGTGTAAGACCATGTC
* * **
51798087 TGGGACA-T-GCATCGGC-TATGAGATGTGTCA
63 TGGGACATTAGCATCGGCAT-TGAGACGAGAGA
51798117 -A-TGTAAGACCATGTCTGGGACATGGCATCG
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCG
51798147 GTACGAATAT
Statistics
Matches: 183, Mismatches: 24, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
90 7 0.04
91 16 0.09
92 25 0.14
93 3 0.02
94 76 0.42
95 56 0.31
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (94 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGCAACATTAAGAGAGCCAGTGTAAGACCATGTCTGG
GACATTAGCATCGGCATTGAGACGAGAGA
Found at i:51807823 original size:11 final size:11
Alignment explanation
Indices: 51807807--51807837 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
51807797 CAGAATTTCA
51807807 TCACGAAATTT
1 TCACGAAATTT
51807818 TCACGAAATTT
1 TCACGAAATTT
*
51807829 TCATGAAAT
1 TCACGAAAT
51807838 CATATCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (11 bp):
TCACGAAATTT
Found at i:51808753 original size:20 final size:20
Alignment explanation
Indices: 51808730--51808768 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
51808720 GTTATAATGA
*
51808730 CCACACAGG-GTGTTGCCCTT
1 CCACACGGGCGTG-TGCCCTT
51808750 CCACACGGGCGTGTGCCCT
1 CCACACGGGCGTGTGCCCT
51808769 GTTTGAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.13, C:0.38, G:0.28, T:0.21
Consensus pattern (20 bp):
CCACACGGGCGTGTGCCCTT
Found at i:51812310 original size:47 final size:47
Alignment explanation
Indices: 51812088--51812727 Score: 965
Period size: 47 Copynumber: 13.4 Consensus size: 47
51812078 CAGCCAAGAG
* * *
51812088 AGTGTATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51812135 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51812184 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51812235 AGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51812286 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51812333 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
51812380 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
51812427 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51812474 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51812521 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51812568 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51812615 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * * *
51812662 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
51812709 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
51812728 TCCCGAAAGG
Statistics
Matches: 561, Mismatches: 24, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
47 426 0.76
49 41 0.07
51 90 0.16
53 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:51812902 original size:37 final size:37
Alignment explanation
Indices: 51812846--51812924 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
51812836 CCGAGCTCTA
* * *
51812846 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
51812883 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51812920 AAGAC
1 AAGAC
51812925 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51814809 original size:43 final size:43
Alignment explanation
Indices: 51814761--51814906 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
51814751 TTGGTTTTCA
51814761 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
51814804 GCACTAAGTGTGCGGGCAATAAGTTTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
51814847 GCTCTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
51814890 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
51814907 TTGAAATGCA
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 99 1.00
ACGTcount: A:0.22, C:0.15, G:0.35, T:0.28
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:51814923 original size:29 final size:29
Alignment explanation
Indices: 51814888--51814961 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
51814878 GTTGTGAGAT
* *
51814888 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
51814917 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
51814946 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
51814962 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:51815396 original size:40 final size:40
Alignment explanation
Indices: 51815273--51815533 Score: 271
Period size: 40 Copynumber: 6.6 Consensus size: 40
51815263 TTGAATGATG
* *
51815273 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * * *
51815313 TCCGGACTAAGACCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATA
* *
51815353 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * *
51815393 TCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
51815433 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* ** * * *
51815473 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
51815513 TCCGGG-TAGGT-CCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
51815534 ATCATGCTGG
Statistics
Matches: 188, Mismatches: 31, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
38 10 0.05
39 2 0.01
40 158 0.84
41 18 0.10
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:51818954 original size:47 final size:47
Alignment explanation
Indices: 51818732--51819375 Score: 867
Period size: 47 Copynumber: 13.4 Consensus size: 47
51818722 CAGCCAAGAG
* * *
51818732 AGTGTATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51818779 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51818828 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51818879 AGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
51818930 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
51818977 AGTGTATCTGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51819024 AGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
51819075 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
51819122 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * *
51819169 AGTGTATATATGTAATAAGGCCTAATGGGCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
51819216 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
51819263 AGTGTATATATGTGATAAGGCCTAAT-GCCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAG-CCGATGTGATGAATGTGAA
* * * * * * * * *
51819310 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
51819357 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
51819376 TCCCGAAAGG
Statistics
Matches: 545, Mismatches: 38, Indels: 28
0.89 0.06 0.05
Matches are distributed among these distances:
46 1 0.00
47 363 0.67
48 1 0.00
49 43 0.08
51 133 0.24
53 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:51819024 original size:145 final size:144
Alignment explanation
Indices: 51818734--51819312 Score: 905
Period size: 145 Copynumber: 4.0 Consensus size: 144
51818724 GCCAAGAGAG
* *
51818734 TGTATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAA
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA--TATATGTGATAA
* * *
51818799 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATAAGGCCTAATGGCCGA
64 GGCCTAATAGCCGACGTGATGAATGTGAAA--G--TGTATATATGTGATAAGGCCTAATAGCCGA
51818864 TGTGATGAATGTGAAAGTATA
125 TGTGATGAATGTGAAAGT-TA
*
51818885 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* *
51818950 CCTAATAGCCGACGTGATGAATGTGAAAGTGTATCTGTGTGATAAGGCCTAATAGCCGATGTGAT
66 CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
51819015 GAATGTGAAAGTGTA
131 GAATGTGAAAGT-TA
*
51819030 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
*
51819095 CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGAT
66 CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
51819160 GAATGTGAAAG---
131 GAATGTGAAAGTTA
* * *
51819171 TGTATATATGTAATAAGGCCTAATGGGCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* * *
51819236 CCTAATGGCCGATGCGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCCGATGTGA
66 CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG-CCGATGTGA
51819300 TGAATGTGAAAGT
130 TGAATGTGAAAGT
51819313 GTATATATGT
Statistics
Matches: 408, Mismatches: 18, Indels: 13
0.93 0.04 0.03
Matches are distributed among these distances:
140 1 0.00
141 131 0.32
145 187 0.46
147 1 0.00
149 39 0.10
151 49 0.12
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (144 bp):
TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
GAATGTGAAAGTTA
Found at i:51819550 original size:37 final size:37
Alignment explanation
Indices: 51819494--51819572 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
51819484 CCGAGCTCTA
* * *
51819494 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
51819531 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51819568 AAGAC
1 AAGAC
51819573 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51825618 original size:38 final size:38
Alignment explanation
Indices: 51825576--51825695 Score: 152
Period size: 38 Copynumber: 3.1 Consensus size: 38
51825566 GCAGGCTATA
51825576 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
* *
51825614 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCCTAG
1 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * * *
51825652 TGCTGGTATTATATCTGAGTTTAAAGTCCCGTAGGCTTCG
1 TGCTGGAATTATATCCG-GGTTAAA-TCCCGCAGGCTTCG
51825692 TGCT
1 TGCT
51825696 AGTGTTATGT
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
37 1 0.01
38 46 0.66
39 8 0.11
40 15 0.21
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.32
Consensus pattern (38 bp):
TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:51827307 original size:43 final size:43
Alignment explanation
Indices: 51827259--51827523 Score: 386
Period size: 43 Copynumber: 6.2 Consensus size: 43
51827249 GCATGAAACT
* *
51827259 CGGTGATGTGTATTCAGGCCTTTGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * *
51827302 CGGTGATGAGTATTTGGGCCTTTGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
51827345 CGGTGATGTGTATTCGGGCCTTAGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * **
51827388 CAGTGATGAGTATTCGGGCCTTCGTGCCTATTAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
**
51827431 CGGTGATGTGTATTCGGGCCTTCGTGCCTATTAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * **
51827474 CAGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTTAATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
51827517 CGGTGAT
1 CGGTGAT
51827524 TCGAGCAAGG
Statistics
Matches: 202, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 202 1.00
ACGTcount: A:0.12, C:0.22, G:0.33, T:0.32
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:51827742 original size:29 final size:29
Alignment explanation
Indices: 51827710--51827863 Score: 129
Period size: 29 Copynumber: 5.4 Consensus size: 29
51827700 TTTAACCGAT
*
51827710 CACTATGTGTGCGAGATCGGTAGTTGAGG
1 CACTATGTGTGCGAGATCGGTAATTGAGG
* ** **
51827739 CACTGTGTGTGCGA-ATTCCTTTAACCGA-G
1 CACTATGTGTGCGAGA-T-CGGTAATTGAGG
51827768 CACTATGTGTGCGAGATCGGTAATTGAGG
1 CACTATGTGTGCGAGATCGGTAATTGAGG
* * * *
51827797 CACTGTGTGTGCGAGTTC-TTCAATCGA-G
1 CACTATGTGTGCGAGATCGGT-AATTGAGG
* *
51827825 CACTATGTGTGCGAGATCGGTCAGTG-GG
1 CACTATGTGTGCGAGATCGGTAATTGAGG
*
51827853 CACTAAGTGTG
1 CACTATGTGTG
51827864 TGAAATGAGA
Statistics
Matches: 96, Mismatches: 22, Indels: 15
0.72 0.17 0.11
Matches are distributed among these distances:
28 38 0.40
29 52 0.54
30 6 0.06
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (29 bp):
CACTATGTGTGCGAGATCGGTAATTGAGG
Found at i:51827745 original size:58 final size:58
Alignment explanation
Indices: 51827677--51827869 Score: 268
Period size: 58 Copynumber: 3.3 Consensus size: 58
51827667 TGAATGATTA
*
51827677 GAGGCACTGTGTGTGCAAATTCCTTTAACCGATCACTATGTGTGCGAGATCGGTAGTT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAGTT
* *
51827735 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAGTT
* * * *
51827793 GAGGCACTGTGTGTGCGAGTT-CTTCAATCGAGCACTATGTGTGCGAGATCGGTCAG-T
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT-AGTT
51827850 G-GGCACTAAGTGTGTG-AAAT
1 GAGGCACT--GTGTGTGCAAAT
51827870 GAGATTCATG
Statistics
Matches: 123, Mismatches: 9, Indels: 7
0.88 0.06 0.05
Matches are distributed among these distances:
56 6 0.05
57 34 0.28
58 83 0.67
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAGTT
Found at i:51830027 original size:48 final size:48
Alignment explanation
Indices: 51829873--51830020 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
51829863 ATATATACAC
* **
51829873 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** *
51829921 GGCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
51829969 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACAGATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
51830017 ATCT
1 ATCT
51830021 TGTACATCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:51832374 original size:23 final size:23
Alignment explanation
Indices: 51832342--51832385 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
51832332 AAAATTTCAC
* *
51832342 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
51832365 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
51832386 TATTTTTGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:51834195 original size:38 final size:38
Alignment explanation
Indices: 51834153--51834274 Score: 138
Period size: 38 Copynumber: 3.2 Consensus size: 38
51834143 GCAGGCTATA
51834153 TGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCG
1 TGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCG
* * * * *
51834191 TGCTGGTAA-TATATCCGAGTTAAATCCTGCAGGCCTAG
1 TGCTGG-AATTATATCCGGGTTAAATCCCGTAGGCTTCG
* * *
51834229 TGCTGGTATTATATCTGAGTTTAAAGTCCCGTAGGCTTCG
1 TGCTGGAATTATATCCG-GGTTAAA-TCCCGTAGGCTTCG
51834269 TGCTGG
1 TGCTGG
51834275 TGTTATGTTT
Statistics
Matches: 67, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
37 1 0.01
38 43 0.64
39 7 0.10
40 16 0.24
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (38 bp):
TGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCG
Found at i:51846512 original size:28 final size:28
Alignment explanation
Indices: 51846425--51846500 Score: 143
Period size: 28 Copynumber: 2.7 Consensus size: 28
51846415 TGTACTAGAG
*
51846425 TACCGCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
51846453 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
51846481 TACCCCTATGTATGCAAAAT
1 TACCCCTATGTATGCAAAAT
51846501 GACCTCTATA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.32
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATTACCATTA
Found at i:51846663 original size:28 final size:27
Alignment explanation
Indices: 51846622--51846709 Score: 106
Period size: 27 Copynumber: 3.1 Consensus size: 27
51846612 AGGAAGCGTC
51846622 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
51846650 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
51846677 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
51846706 CTGG
1 CTGG
51846710 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
27 23 0.45
28 23 0.45
29 5 0.10
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:51861218 original size:22 final size:22
Alignment explanation
Indices: 51861193--51861243 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
51861183 CACTAGGGAC
*
51861193 TATGTGATTTGAGCTCATGAGT-
1 TATGTGATCTGAGCTCATGA-TA
*
51861215 TATGTGGTCTGAGCTCATGATA
1 TATGTGATCTGAGCTCATGATA
51861237 TATGTGA
1 TATGTGA
51861244 CACATGTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.24, C:0.10, G:0.27, T:0.39
Consensus pattern (22 bp):
TATGTGATCTGAGCTCATGATA
Found at i:51874945 original size:47 final size:48
Alignment explanation
Indices: 51874873--51875189 Score: 170
Period size: 47 Copynumber: 6.8 Consensus size: 48
51874863 TTATAAGTGT
* * *
51874873 GCTAGTGTACGA-AATGTCTGAGACAT-GCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* * *
51874919 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG---TATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT---ATGAGA
* * * *
51874967 GCTAATGTAAGA-CATGTCTGGGACAT--CTATCAGCCTCGA-GATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGC-ATCGGCCAC-ATTATG-AGA
* * * * * * * *
51875013 ACCAGTGTAAGA-CATGTCTGGGATAT-GAATTGGCTAC--GA-GATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGA-GA
* * * *
51875057 GTTAGTTTAAGACCATGTCTGGGACATGGCATTGG-CACGGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC--AT-TATGAGA
*
51875107 GCTAGTGTAAGACCATGTCTAGGACATGGCATC-G--AC-TTGATGGATGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-AT-GA-GA
51875154 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
51875190 ATTATACACT
Statistics
Matches: 206, Mismatches: 38, Indels: 51
0.70 0.13 0.17
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 11 0.05
45 21 0.10
46 52 0.25
47 61 0.30
48 25 0.12
49 1 0.00
50 31 0.15
51 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
Found at i:51877211 original size:27 final size:27
Alignment explanation
Indices: 51877197--51877296 Score: 182
Period size: 27 Copynumber: 3.7 Consensus size: 27
51877187 TACTCCACAA
*
51877197 GGGTATCTCGATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
51877224 GGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
51877251 GGGTATTTCGATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
51877278 GGGTATTTCGATAATTCTA
1 GGGTATTTCGATAATTCTA
51877297 TAACTTATCC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:51877255 original size:54 final size:54
Alignment explanation
Indices: 51877179--51877296 Score: 184
Period size: 54 Copynumber: 2.2 Consensus size: 54
51877169 GGGGCAAAAT
*
51877179 GGTAATTTTACTCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACTCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
* *
51877233 GGTAATTCTAC-CCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACTCC-ACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
*
51877287 GATAATTCTA
1 GGTAATTCTA
51877297 TAACTTATCC
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
53 2 0.03
54 57 0.97
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (54 bp):
GGTAATTCTACTCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
Found at i:51884733 original size:27 final size:27
Alignment explanation
Indices: 51884703--51884792 Score: 162
Period size: 27 Copynumber: 3.3 Consensus size: 27
51884693 GGTATATCGA
51884703 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
51884730 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAG
*
51884757 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
51884784 TAATTCTAC
1 TAATTCTAC
51884793 AACTTATCCA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:51884776 original size:54 final size:54
Alignment explanation
Indices: 51884675--51884792 Score: 175
Period size: 54 Copynumber: 2.2 Consensus size: 54
51884665 GGGCAAAATG
* *
51884675 GTAATTTTACTCCACAAGGGTATATCGATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACTCCACAAGGGTATATCAATAATTCTACCCTACAGGGGTATTTCA
* * *
51884729 GTAATTCTAC-CCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACTCC-ACAAGGGTATATCAATAATTCTACCCTACAGGGGTATTTCA
51884783 GTAATTCTAC
1 GTAATTCTAC
51884793 AACTTATCCA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 2 0.03
54 56 0.97
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (54 bp):
GTAATTCTACTCCACAAGGGTATATCAATAATTCTACCCTACAGGGGTATTTCA
Found at i:51889157 original size:37 final size:37
Alignment explanation
Indices: 51889106--51889181 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
51889096 ATGACCGATG
*
51889106 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
51889143 TTGTTGT-ATGTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATGTGGCTTATAATGAT
51889180 TT
1 TT
51889182 TGGCTTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 4 0.11
37 28 0.80
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:51890540 original size:25 final size:25
Alignment explanation
Indices: 51890511--51890558 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51890501 TAAGCTACTA
*
51890511 ATATATTATAATACAATATAGTACG
1 ATATATCATAATACAATATAGTACG
* *
51890536 ATATATCATTATATAATATAGTA
1 ATATATCATAATACAATATAGTA
51890559 GTGGGGCTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.40
Consensus pattern (25 bp):
ATATATCATAATACAATATAGTACG
Found at i:51891366 original size:5 final size:5
Alignment explanation
Indices: 51891356--51891384 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
51891346 GTAATATGTT
51891356 ATATG ATATG ATATG ATATG ATATG ATAT
1 ATATG ATATG ATATG ATATG ATATG ATAT
51891385 ATCATTGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (5 bp):
ATATG
Found at i:51892690 original size:42 final size:43
Alignment explanation
Indices: 51892638--51892760 Score: 117
Period size: 42 Copynumber: 2.9 Consensus size: 43
51892628 GGACTACCGA
* *
51892638 GATTCCGTATAAGACCATATCTGGGATATGGCATCGGTAT-AT
1 GATTTCGTATAAGACCATATCTGGGATATGGCATCGATATGAT
* * *
51892680 GATTTCGTATAACACCATGT-TAGGGACATGGCATCGATATGAT
1 GATTTCGTATAAGACCATATCT-GGGATATGGCATCGATATGAT
* * ** * *
51892723 -ATTTCATGTAAGACCATATCCAGGATATGACATTGATA
1 GATTTCGTATAAGACCATATCTGGGATATGGCATCGATA
51892761 CGGTACTAAG
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
41 1 0.02
42 61 0.95
43 2 0.03
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (43 bp):
GATTTCGTATAAGACCATATCTGGGATATGGCATCGATATGAT
Found at i:51894531 original size:33 final size:33
Alignment explanation
Indices: 51894492--51894557 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
51894482 TTAAGGTACA
*
51894492 TTCCTTTCCA-AGTGGTACACGCAAAGTATACCT
1 TTCCTTTCCATA-TGGTACACACAAAGTATACCT
*
51894525 TTCCTTTTCATATGGTACACACAAAGTATACCT
1 TTCCTTTCCATATGGTACACACAAAGTATACCT
51894558 AACCTTTCAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (33 bp):
TTCCTTTCCATATGGTACACACAAAGTATACCT
Found at i:51894564 original size:33 final size:33
Alignment explanation
Indices: 51894504--51894598 Score: 104
Period size: 33 Copynumber: 2.9 Consensus size: 33
51894494 CCTTTCCAAG
* ** *
51894504 TGGTACACGCAAAGTATACCTTTCCTTTTCATA
1 TGGTACACACAAAGTATACCTAACCTTTTCAGA
*
51894537 TGGTACACACAAAGTATACCTAACC-TTTCAGG
1 TGGTACACACAAAGTATACCTAACCTTTTCAGA
* * *
51894569 T-GTACACACAAGGTGTACATAACCTTTTCA
1 TGGTACACACAAAGTATACCTAACCTTTTCA
51894599 AATTAAACCA
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
31 20 0.38
32 11 0.21
33 22 0.42
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (33 bp):
TGGTACACACAAAGTATACCTAACCTTTTCAGA
Found at i:51894577 original size:31 final size:32
Alignment explanation
Indices: 51894504--51894595 Score: 96
Period size: 31 Copynumber: 2.9 Consensus size: 32
51894494 CCTTTCCAAG
* ** *
51894504 TGGTACACGCAAAGTATACCTTTCCTTTTCATA
1 TGGTACACACAAAGTATACCTAACC-TTTCAGA
*
51894537 TGGTACACACAAAGTATACCTAACCTTTCAGG
1 TGGTACACACAAAGTATACCTAACCTTTCAGA
* * *
51894569 T-GTACACACAAGGTGTACATAACCTTT
1 TGGTACACACAAAGTATACCTAACCTTT
51894596 TCAAATTAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
31 23 0.45
32 6 0.12
33 22 0.43
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (32 bp):
TGGTACACACAAAGTATACCTAACCTTTCAGA
Found at i:51896174 original size:43 final size:43
Alignment explanation
Indices: 51896119--51896232 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 43
51896109 GACAGGTACA
* * * *
51896119 ATGCCGACGTCCCAGACGTGGTCTTACATGTAATTC-AGTATCG
1 ATGCCGATGTCCCAGACGTGGTCTTACATGAAAATCAAATA-CG
** *
51896162 ATGCCTCTGTCCCAGACAG-GGTCTTATATGAAAATCAAATACG
1 ATGCCGATGTCCCAGAC-GTGGTCTTACATGAAAATCAAATACG
* *
51896205 ATGCCGATGTCCCGGACATGGTCTTACA
1 ATGCCGATGTCCCAGACGTGGTCTTACA
51896233 CATAAATTTC
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
43 52 0.93
44 4 0.07
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACGTGGTCTTACATGAAAATCAAATACG
Found at i:51903496 original size:44 final size:43
Alignment explanation
Indices: 51903374--51903522 Score: 128
Period size: 42 Copynumber: 3.5 Consensus size: 43
51903364 GTCCGAGACG
* * * *
51903374 TGGTCTTACATGT-AATTCAGTATCGATGCCTCTGTCCCACACA
1 TGGTCTTACACGTAAATTCA-AATCGATGCCTGTGTCCCAAACA
* * * **
51903417 AGGTCTTATACG-AAA-TCAGATACGATGCC-GATGTCCCGGACA
1 TGGTCTTACACGTAAATTCAAAT-CGATGCCTG-TGTCCCAAACA
51903459 TGGTCTTACACGTAAATTTCAAATCGATGCCTGTGTCCCAAACA
1 TGGTCTTACACGTAAA-TTCAAATCGATGCCTGTGTCCCAAACA
*
51903503 CGGTCTTACACG-ATAATTCA
1 TGGTCTTACACGTA-AATTCA
51903523 GTTCAATACC
Statistics
Matches: 85, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
41 2 0.02
42 29 0.34
43 19 0.22
44 29 0.34
45 6 0.07
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (43 bp):
TGGTCTTACACGTAAATTCAAATCGATGCCTGTGTCCCAAACA
Found at i:51903508 original size:86 final size:85
Alignment explanation
Indices: 51903356--51903515 Score: 216
Period size: 86 Copynumber: 1.9 Consensus size: 85
51903346 GACAGGTACA
* * * *
51903356 ATGCCGATGTCCGAGACGTGGTCTTACATGTAATTCAGTATCGATGCCTCTGTCCCACACAAGGT
1 ATGCCGATGTCCGAGACATGGTCTTACACGTAATTCAGAATCGATGCCTCTGTCCCAAACAAGGT
*
51903421 CTTATACGAAATCAGATACG
66 CTTACACGAAATCAGATACG
* *
51903441 ATGCCGATGTCCCG-GACATGGTCTTACACGTAAATTTCA-AATCGATGCCTGTGTCCCAAACAC
1 ATGCCGATGT-CCGAGACATGGTCTTACACGT-AA-TTCAGAATCGATGCCTCTGTCCCAAACAA
51903504 GGTCTTACACGA
63 GGTCTTACACGA
51903516 TAATTCAGTT
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
85 25 0.38
86 36 0.55
87 4 0.06
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (85 bp):
ATGCCGATGTCCGAGACATGGTCTTACACGTAATTCAGAATCGATGCCTCTGTCCCAAACAAGGT
CTTACACGAAATCAGATACG
Found at i:51912686 original size:46 final size:46
Alignment explanation
Indices: 51912575--51912796 Score: 225
Period size: 46 Copynumber: 4.7 Consensus size: 46
51912565 TCATCTTCGA
* *
51912575 GGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATACAT
1 GGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTC--ATA-ATAT
*
51912626 -GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATAATGT
1 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATAATAT
* * *
51912671 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCAT-CTCAA
1 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATAAT-AT
* ** * *
51912717 CGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATAATGT
1 GGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACTCATAATAT
* *
51912765 GGCCGATGCATGTTCCAGACATGTCTTACACT
1 GGCTGATGCATGTCCCAGACATGTCTTACACT
51912797 GGCGCACAAA
Statistics
Matches: 147, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
45 3 0.02
46 57 0.39
47 27 0.18
48 38 0.26
49 15 0.10
50 7 0.05
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GGCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATAATAT
Found at i:51912745 original size:94 final size:93
Alignment explanation
Indices: 51912575--51912796 Score: 288
Period size: 94 Copynumber: 2.3 Consensus size: 93
51912565 TCATCTTCGA
* * **
51912575 GGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATACATGCTGATGCATGTCC
1 GGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCG-ATATACACGCCAATGCATGTCC
51912640 CAGACATGTCTTACACTAGC-ACTCATAATGT
63 CAGACATGTCTTACACTAGCTA-TCATAATGT
*
51912671 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTC-ATCT-CAACGCCAATGCCATGTCCC
1 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGATATAC-ACGCCAATG-CATGTCCC
*
51912734 AGACATGGTCTTACACTGGCTATCATAATGT
64 AGACAT-GTCTTACACTAGCTATCATAATGT
* *
51912765 GGCCGATGCATGTTCCAGACATGTCTTACACT
1 GGCTGATGCATGTCCCAGACATGTCTTACACT
51912797 GGCGCACAAA
Statistics
Matches: 114, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
91 1 0.01
92 9 0.08
93 14 0.12
94 67 0.59
95 15 0.13
96 8 0.07
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (93 bp):
GGCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGATATACACGCCAATGCATGTCCCAG
ACATGTCTTACACTAGCTATCATAATGT
Found at i:51918694 original size:48 final size:48
Alignment explanation
Indices: 51918613--51918777 Score: 189
Period size: 48 Copynumber: 3.5 Consensus size: 48
51918603 TTGCCAACGC
*
51918613 CATGTCCCAGACATCGTCTTACACAAGCTCTCGTATATACGTGCCGATG
1 CATGTCCCAGACATCGTCTTACACTAGCTCTCGTATA-ACGTGCCGATG
* *
51918662 CATGTCCCAGACAT-GTCTTACACTAGCCCTCGTCTCAAC--GCCGATG
1 CATGTCCCAGACATCGTCTTACACTAGCTCTCGTAT-AACGTGCCGATG
* * * *
51918708 CCATGTCCCAGACATGGTCTTACACTGGCTATC--ATAATGTGGCCGATG
1 -CATGTCCCAGACATCGTCTTACACTAGCTCTCGTATAACGT-GCCGATG
51918756 CATGTCCCAGACAT-GTCTTACA
1 CATGTCCCAGACATCGTCTTACA
51918778 GTGGTGCACA
Statistics
Matches: 102, Mismatches: 8, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
45 2 0.02
46 16 0.16
47 28 0.27
48 41 0.40
49 15 0.15
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.26
Consensus pattern (48 bp):
CATGTCCCAGACATCGTCTTACACTAGCTCTCGTATAACGTGCCGATG
Found at i:51924396 original size:17 final size:17
Alignment explanation
Indices: 51924374--51924406 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
51924364 TAGTACATAA
51924374 AATATCATTAA-AAAATT
1 AATATC-TTAATAAAATT
51924391 AATATCTTAATAAAAT
1 AATATCTTAATAAAAT
51924407 ATTATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (17 bp):
AATATCTTAATAAAATT
Found at i:51929238 original size:21 final size:21
Alignment explanation
Indices: 51929206--51929246 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
51929196 AGGCTCGAGG
51929206 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
51929227 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
51929247 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:51934212 original size:21 final size:21
Alignment explanation
Indices: 51934173--51934212 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
51934163 ATGAATTCAC
*
51934173 CTTTAAAGAAAATATATATAT
1 CTTTAAAGAAAATAAATATAT
51934194 CTTTAAA-AAAATTAAATAT
1 CTTTAAAGAAAA-TAAATAT
51934213 TAAAGAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (21 bp):
CTTTAAAGAAAATAAATATAT
Done.