Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 185 of 352
Found at i:60750851 original size:12 final size:12
Alignment explanation
Indices: 60750834--60750860 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
60750824 GCTAATGTGA
60750834 ATTGTTATTATT
1 ATTGTTATTATT
60750846 ATTGTTATTATT
1 ATTGTTATTATT
60750858 ATT
1 ATT
60750861 TATTCAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (12 bp):
ATTGTTATTATT
Found at i:60751252 original size:29 final size:27
Alignment explanation
Indices: 60751192--60751253 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
60751182 ATGCCTTATT
*
60751192 GGTGTGTTTGGGAGGATATGTTATACC
1 GGTGTGTTTGGGAGGATATATTATACC
* *
60751219 GGTGTGTTTGGGAGGCTATATTATACT
1 GGTGTGTTTGGGAGGATATATTATACC
60751246 GGTGTGTT
1 GGTGTGTT
60751254 ATAGAGGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.16, C:0.06, G:0.37, T:0.40
Consensus pattern (27 bp):
GGTGTGTTTGGGAGGATATATTATACC
Found at i:60751260 original size:27 final size:27
Alignment explanation
Indices: 60751191--60751284 Score: 91
Period size: 27 Copynumber: 3.4 Consensus size: 27
60751181 AATGCCTTAT
* *
60751191 TGGTGTGTTTGGGAGGATATGTTATAC
1 TGGTGTGTTTGAGAGGATATATTATAC
* * *
60751218 CGGTGTGTTTGGGAGGCTATATTATAC
1 TGGTGTGTTTGAGAGGATATATTATAC
*
60751245 TGGTGTGTTAT-AGAGGATTTATATTATTC
1 TGGTGTGTT-TGAGAGGA--TATATTATAC
60751274 TGGGTGTGTTT
1 T-GGTGTGTTT
60751285 AGGTTGGATA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
27 36 0.64
28 1 0.02
29 11 0.20
30 8 0.14
ACGTcount: A:0.18, C:0.05, G:0.33, T:0.44
Consensus pattern (27 bp):
TGGTGTGTTTGAGAGGATATATTATAC
Found at i:60754911 original size:44 final size:46
Alignment explanation
Indices: 60754846--60755053 Score: 167
Period size: 47 Copynumber: 4.5 Consensus size: 46
60754836 ATGTATGCCT
60754846 ATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T-A-GCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGC-CAACTCTGTAAGGCCG
* * * *
60754890 ATGCATGTCCCAGACACGTCTTACACTGGCTATCTCTGTCAAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCCAACTCTGT-AAGGCCG
* * * * * *
60754937 ATACATGTCCCAGACATGTCTTACTCT-GGC-ACTCATAATATGGCTG
1 ATGCATGTCCCAGACATGTCTTACACTAGCCAACTC-T-GTAAGGCCG
* ** * *
60754983 AAGCATGTCCCAGACATGTCTTACACTAGCCTTCGTCTG-GATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCCAAC-TCTGTAAGGCCG
*
60755029 ATGCCATGTCCTAGACATGGTCTTA
1 ATG-CATGTCCCAGACAT-GTCTTA
60755054 TACTGGCGCA
Statistics
Matches: 128, Mismatches: 25, Indels: 18
0.75 0.15 0.11
Matches are distributed among these distances:
43 5 0.04
44 29 0.23
45 3 0.02
46 37 0.29
47 44 0.34
48 8 0.06
49 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCCAACTCTGTAAGGCCG
Found at i:60764600 original size:28 final size:26
Alignment explanation
Indices: 60764547--60764600 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 26
60764537 TAAACACAAT
**
60764547 TTAGGCCTAAGCCCTTTCAGTTTCAG
1 TTAGGCCTAAGCCCTTTCAGAATCAG
*
60764573 TTAGAGCCTTAGCCCATTTCAGAATCAG
1 TTAG-GCCTAAGCCC-TTTCAGAATCAG
60764601 AAACAGTGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 4 0.17
27 9 0.39
28 10 0.43
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (26 bp):
TTAGGCCTAAGCCCTTTCAGAATCAG
Found at i:60765065 original size:27 final size:27
Alignment explanation
Indices: 60765031--60765124 Score: 118
Period size: 27 Copynumber: 3.5 Consensus size: 27
60765021 TAGGCCAAAT
60765031 TAGTCATTTTACCTTACAGGGGTATTA
1 TAGTCATTTTACCTTACAGGGGTATTA
* **
60765058 TAGTCATTTTACCCTACAAAGGTATTA
1 TAGTCATTTTACCTTACAGGGGTATTA
* *
60765085 TAGTTATTTTACCTTATAGGGGTATT-
1 TAGTCATTTTACCTTACAGGGGTATTA
*
60765111 TCGGTCATTTTACC
1 T-AGTCATTTTACC
60765125 CTATGGGGGT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.02
27 55 0.98
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.43
Consensus pattern (27 bp):
TAGTCATTTTACCTTACAGGGGTATTA
Found at i:60765133 original size:27 final size:27
Alignment explanation
Indices: 60765033--60765149 Score: 94
Period size: 27 Copynumber: 4.3 Consensus size: 27
60765023 GGCCAAATTA
* * *
60765033 GTCATTTTACCTTACAGGGGTATTAT-A
1 GTCATTTTACCCTATAGGGGTATT-TCG
* ** *
60765060 GTCATTTTACCCTACAAAGGTATTAT-A
1 GTCATTTTACCCTATAGGGGTATT-TCG
* *
60765087 GTTATTTTACCTTATAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* *
60765114 GTCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTCG
*
60765141 GTTATTTTA
1 GTCATTTTA
60765150 TCTCATAAGG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 74 0.99
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTCG
Found at i:60765238 original size:27 final size:27
Alignment explanation
Indices: 60765144--60765241 Score: 103
Period size: 26 Copynumber: 3.6 Consensus size: 27
60765134 TATTTTGGTT
*
60765144 ATTTTATCTCATAAGGGCTAAAATTGTC
1 ATTTTATCTCATAAGGGC-AAAATAGTC
*
60765172 ATTTTATC-CAATAGGGGCAAAATAGTC
1 ATTTTATCTC-ATAAGGGCAAAATAGTC
* *
60765199 A-TTTACCAT-ATAAGGGCAAAACAGTC
1 ATTTTATC-TCATAAGGGCAAAATAGTC
*
60765225 ATTTTGTCTCATAAGGG
1 ATTTTATCTCATAAGGG
60765242 TTCACGTACG
Statistics
Matches: 58, Mismatches: 7, Indels: 11
0.76 0.09 0.14
Matches are distributed among these distances:
26 22 0.38
27 21 0.36
28 15 0.26
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (27 bp):
ATTTTATCTCATAAGGGCAAAATAGTC
Found at i:60787392 original size:31 final size:32
Alignment explanation
Indices: 60787357--60787425 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 32
60787347 AGACCCCCAA
*
60787357 AAGTTTAAGTACCAACTTAAG-AAAAAGTGTC
1 AAGTTTAAGTACCAAATTAAGAAAAAAGTGTC
* * *
60787388 AAGTTTAGGTACCAAATTAGGAAAAAAGTGTT
1 AAGTTTAAGTACCAAATTAAGAAAAAAGTGTC
60787420 AAGTTT
1 AAGTTT
60787426 GGGAGCCAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
31 18 0.55
32 15 0.45
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.29
Consensus pattern (32 bp):
AAGTTTAAGTACCAAATTAAGAAAAAAGTGTC
Found at i:60791006 original size:42 final size:42
Alignment explanation
Indices: 60790941--60791044 Score: 174
Period size: 42 Copynumber: 2.5 Consensus size: 42
60790931 ACACGCCCAG
*
60790941 GACACATGCCTGTGCCT-GAGGCCGTGTCATCCACATGGCTGA
1 GACACATGCCTGTGTCTCG-GGCCGTGTCATCCACATGGCTGA
60790983 GACACATGCCTGTGTCTCGGGCCGTGTCATCCACATGGCTGA
1 GACACATGCCTGTGTCTCGGGCCGTGTCATCCACATGGCTGA
*
60791025 GACACACGCCTGTGTCTCGG
1 GACACATGCCTGTGTCTCGG
60791045 CCCATGTGCT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
42 58 0.98
43 1 0.02
ACGTcount: A:0.17, C:0.32, G:0.29, T:0.22
Consensus pattern (42 bp):
GACACATGCCTGTGTCTCGGGCCGTGTCATCCACATGGCTGA
Found at i:60792037 original size:41 final size:41
Alignment explanation
Indices: 60791992--60792088 Score: 176
Period size: 41 Copynumber: 2.4 Consensus size: 41
60791982 ACGGGCCAAT
60791992 TCACACAAGCTGTCAATCAAGACGTAGCTACTCAGTGCTAC
1 TCACACAAGCTGTCAATCAAGACGTAGCTACTCAGTGCTAC
* *
60792033 TCACACAAGCTGTCAATCAAGATGTAGCTACTCAGTGCTGC
1 TCACACAAGCTGTCAATCAAGACGTAGCTACTCAGTGCTAC
60792074 TCACACAAGCTGTCA
1 TCACACAAGCTGTCA
60792089 GGTATCCACA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.23
Consensus pattern (41 bp):
TCACACAAGCTGTCAATCAAGACGTAGCTACTCAGTGCTAC
Found at i:60804360 original size:15 final size:16
Alignment explanation
Indices: 60804328--60804361 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
60804318 ATTCGGGGAA
*
60804328 TAAAAAAAATTACTTT
1 TAAAAAAAATTACATT
60804344 TAAAAAAAATTA-ATT
1 TAAAAAAAATTACATT
60804359 TAA
1 TAA
60804362 TCACATTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (16 bp):
TAAAAAAAATTACATT
Found at i:60804739 original size:19 final size:20
Alignment explanation
Indices: 60804701--60804739 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
60804691 AGACTTGACC
*
60804701 TCTCTTCACTAAAAATAAAT
1 TCTCTTCACTAAAAAGAAAT
*
60804721 TCTC-TCACTATAAAGAAAT
1 TCTCTTCACTAAAAAGAAAT
60804740 CAGATAAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.33
Consensus pattern (20 bp):
TCTCTTCACTAAAAAGAAAT
Found at i:60805608 original size:53 final size:53
Alignment explanation
Indices: 60805545--60805751 Score: 155
Period size: 53 Copynumber: 3.8 Consensus size: 53
60805535 TTCCTTTTTA
* * ** * *
60805545 AACTTACCATTTCCATTTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* *
60805598 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
** * * * * *** *
60805652 TAGTTTATCAATGCCATGACTTGACATGGTCTTACATGATTTCCTTGCCTTGGA-A
1 -AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTT--ATG
* * * * * *
60805707 AACTTACCAATGCCATGCCTTGGCATCGTCTTACTTGGTATCCTT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTT
60805752 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 29, Indels: 7
0.77 0.18 0.04
Matches are distributed among these distances:
53 44 0.36
54 37 0.31
55 39 0.32
57 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:60805684 original size:55 final size:53
Alignment explanation
Indices: 60805563--60805751 Score: 155
Period size: 55 Copynumber: 3.5 Consensus size: 53
60805553 ATTTCCATTT
* * * *
60805563 CTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTGCCATGC
1 CTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATGA
* * ** * *
60805616 CTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATGCCATGA
1 CTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G-AACTCACCAATGCCATGA
*** * * *
60805671 CTTGACATGGTCTTACATGATTTCCTTGCCTTGGA-AAACTTACCAATGCCATGC
1 CTTGACATGGTCTTACATGGGATCCTTGCCTT--ATGAACTCACCAATGCCATGA
* * * *
60805725 CTTGGCATCGTCTTACTTGGTATCCTT
1 CTTGACATGGTCTTACATGGGATCCTT
60805752 AAACCCTAAT
Statistics
Matches: 107, Mismatches: 25, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
53 30 0.28
54 37 0.35
55 39 0.36
57 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (53 bp):
CTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATGA
Found at i:60807532 original size:35 final size:36
Alignment explanation
Indices: 60807486--60807558 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 36
60807476 TCAACTGGGG
60807486 TATGTTGGCTTGCATTTCTTGGTG-TGGTCGAATGC
1 TATGTTGGCTTGCATTTCTTGGTGTTGGTCGAATGC
60807521 TATGTTGGCTTGCATTTCTTGGTGTTGGTCGAATGC
1 TATGTTGGCTTGCATTTCTTGGTGTTGGTCGAATGC
60807557 TA
1 TA
60807559 CTTTCCCTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 24 0.65
36 13 0.35
ACGTcount: A:0.12, C:0.14, G:0.30, T:0.44
Consensus pattern (36 bp):
TATGTTGGCTTGCATTTCTTGGTGTTGGTCGAATGC
Found at i:60812960 original size:27 final size:27
Alignment explanation
Indices: 60812919--60812991 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
60812909 GGGCAAAACA
* *
60812919 GTCATTTTACCCTACAGGGGTATGTCG
1 GTCATTTTACACTACAAGGGTATGTCG
* * *
60812946 GTCATTTTACACTACAAGGTTATTTGG
1 GTCATTTTACACTACAAGGGTATGTCG
*
60812973 GTCATTTTACAATACAAGG
1 GTCATTTTACACTACAAGG
60812992 TTATTTCGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.36
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:60812992 original size:27 final size:27
Alignment explanation
Indices: 60812945--60812997 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
60812935 GGGGTATGTC
*
60812945 GGTCATTTTACACTACAAGGTTATTTG
1 GGTCATTTTACAATACAAGGTTATTTG
60812972 GGTCATTTTACAATACAAGGTTATTT
1 GGTCATTTTACAATACAAGGTTATTT
60812998 CGATAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.42
Consensus pattern (27 bp):
GGTCATTTTACAATACAAGGTTATTTG
Found at i:60813041 original size:27 final size:26
Alignment explanation
Indices: 60813003--60813461 Score: 285
Period size: 27 Copynumber: 17.2 Consensus size: 26
60812993 TATTTCGATA
*
60813003 AATTTT-CAAATCAGAGGTGTTTTGGT
1 AATTTTACAAATC-GAGGTGTTTTAGT
60813029 AATTTTACAAATCGAGG-GTATTTCAGT
1 AATTTTACAAATCGAGGTGT-TTT-AGT
* * *
60813056 AATTTTATAAATCG-GGAGTATTTTGAT
1 AATTTTACAAATCGAGGTGT-TTTAG-T
*
60813083 AATTTTACAAATCGAGGGTGTTTCAGT
1 AATTTTACAAATCGA-GGTGTTTTAGT
* * *
60813110 AATTTCACAAATCG-GGGGTATTTCGGT
1 AATTTTACAAATCGAGGTGT-TTT-AGT
*** **
60813137 AATTTTACAAATCGAGCAAATTTCGGT
1 AATTTTACAAATCGAG-GTGTTTTAGT
* * * *
60813164 AA-TTT-CAGAATTGATGGTATTTCAAT
1 AATTTTACA-AATCGA-GGTGTTTTAGT
* *
60813190 AATTTTACAAATCAAGG-GTATTTCAGA
1 AATTTTACAAATCGAGGTGT-TTT-AGT
* *
60813217 AATTTCAC-AATCGAGGGTATTTTAGT
1 AATTTTACAAATCGA-GGTGTTTTAGT
* *
60813243 AATTTTACAAATCGAGGGTGTTTCAAT
1 AATTTTACAAATCGA-GGTGTTTTAGT
60813270 AATTTTACAAATCGAGG-GTATTTCAGT
1 AATTTTACAAATCGAGGTGT-TTT-AGT
* * *
60813297 AATTTCAC-AATCAAGG-GTATTTCGGT
1 AATTTTACAAATCGAGGTGT-TTT-AGT
* **
60813323 AATTTTACAAATCAAGAGTGTTTCGGT
1 AATTTTACAAATCGAG-GTGTTTTAGT
60813350 AATTTTACAAATCGAGGGTGTTTTAGT
1 AATTTTACAAATCGA-GGTGTTTTAGT
* * * **
60813377 AATTTCACAAATTAGGGGTGTTTCGGT
1 AATTTTACAAA-TCGAGGTGTTTTAGT
*
60813404 AATTTTACAAATCGAGG-GTTTTCACT
1 AATTTTACAAATCGAGGTGTTTT-AGT
* *
60813430 AATTTTACAAATTGAGGGTATTTTAGT
1 AATTTTACAAATCGA-GGTGTTTTAGT
60813457 AATTT
1 AATTT
60813462 CTTTTTATTA
Statistics
Matches: 344, Mismatches: 59, Indels: 59
0.74 0.13 0.13
Matches are distributed among these distances:
25 15 0.04
26 98 0.28
27 205 0.60
28 19 0.06
29 7 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (26 bp):
AATTTTACAAATCGAGGTGTTTTAGT
Found at i:60813051 original size:54 final size:51
Alignment explanation
Indices: 60812966--60813461 Score: 352
Period size: 54 Copynumber: 9.3 Consensus size: 51
60812956 ACTACAAGGT
* * * *
60812966 TATTTGGGTCATTTTAC-AATACAAGGTTATTTCGATAAATTTTCAAATCAGAGG
1 TATTTCGGTAATTTTACAAAT-CGAGGGTATTTC-AT-AATTTTCAAATC-GAGG
* * * *
60813020 TGTTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAATCGGGAG
1 TATTTCGGTAATTTTACAAATCGAGGGTATTTCA-TAATTTT-CAAATCGAG-G
* * * * *
60813074 TATTTTGATAATTTTACAAATCGAGGGTGTTTCAGTAATTTCACAAATCGGGGG
1 TATTTCGGTAATTTTACAAATCGAGGGTATTTCA-TAATTT-TCAAATC-GAGG
*** * *
60813128 TATTTCGGTAATTTTACAAATCGAGCAAATTTCGGTAA-TTTCAGAATTGATGG
1 TATTTCGGTAATTTTACAAATCGAGGGTATTTC-ATAATTTTCA-AATCGA-GG
** * * *
60813181 TATTTCAATAATTTTACAAATCAAGGGTATTTCAGAAATTTCACAATCGAGGG
1 TATTTCGGTAATTTTACAAATCGAGGGTATTTCATAATTTTCA-AATCGA-GG
** *
60813234 TATTTTAGTAATTTTACAAATCGAGGGTGTTTCAATAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCGAGGGTATTTC-ATAATTTT-CAAATCGA-GG
* * * * *
60813288 TATTTCAGTAATTTCAC-AATCAAGGGTATTTCGGTAATTTTACAAATCAAGAG
1 TATTTCGGTAATTTTACAAATCGAGGGTATTTC-ATAATTTT-CAAATCGAG-G
* * * * * *
60813341 TGTTTCGGTAATTTTACAAATCGAGGGTGTTTTAGTAATTTCACAAATTAGGGG
1 TATTTCGGTAATTTTACAAATCGAGGGTATTTCA-TAATTT-TCAAA-TCGAGG
* *
60813395 TGTTTCGGTAATTTTACAAATCGAGGGT-TTTCACTAATTTTACAAATTGAGGG
1 TATTTCGGTAATTTTACAAATCGAGGGTATTTCA-TAATTTT-CAAATCGA-GG
**
60813448 TATTTTAGTAATTT
1 TATTTCGGTAATTT
60813462 CTTTTTATTA
Statistics
Matches: 358, Mismatches: 65, Indels: 39
0.77 0.14 0.08
Matches are distributed among these distances:
52 8 0.02
53 154 0.43
54 186 0.52
55 10 0.03
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (51 bp):
TATTTCGGTAATTTTACAAATCGAGGGTATTTCATAATTTTCAAATCGAGG
Found at i:60813221 original size:80 final size:81
Alignment explanation
Indices: 60813003--60813462 Score: 488
Period size: 80 Copynumber: 5.7 Consensus size: 81
60812993 TATTTCGATA
*** * *
60813003 AATTTT-CAAATC-AGAGGTGTTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAA
1 AATTTTACAAATCGAG-GGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAA
*
60813066 ATCG-GGAGTATTTTGAT
65 ATCGAGGA-TATTTTGGT
* * * * *
60813083 AATTTTACAAATCGAGGGTGTTTCAGTAATTTCACAAATCGGGGGTATTTCGGTAATTTTACAAA
1 AATTTTACAAATCGAGGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAA
* * *
60813148 TCGAGCAAATTTCGGT
66 TCGAGGATATTTTGGT
* * * * *
60813164 AA-TTT-CAGAATTGATGGTATTTCAATAATTTTACAAATCAAGGGTATTTCAGAAATTTCAC-A
1 AATTTTACA-AATCGAGGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAA
* *
60813226 ATCGAGGGTATTTTAGT
65 ATCGAGGATATTTTGGT
60813243 AATTTTACAAATCGAGGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTCAC-AA
1 AATTTTACAAATCGAGGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAA
* * *
60813307 TCAAGGGTATTTCGGT
66 TCGAGGATATTTTGGT
* * ** * *
60813323 AATTTTACAAATCAAGAGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTTAGTAATTTCACAAA
1 AATTTTACAAATCGAGGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAA
* * * *
60813388 T-TAGGGGTGTTTCGGT
66 TCGA-GGATATTTTGGT
* * *
60813404 AATTTTACAAATCGAGGGT-TTTCACTAATTTTACAAATTGAGGGTATTTTAGTAATTTC
1 AATTTTACAAATCGAGGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTC
60813463 TTTTTATTAC
Statistics
Matches: 325, Mismatches: 47, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
79 17 0.05
80 211 0.65
81 93 0.29
82 4 0.01
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (81 bp):
AATTTTACAAATCGAGGGTGTTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAA
TCGAGGATATTTTGGT
Found at i:60813815 original size:28 final size:28
Alignment explanation
Indices: 60813778--60813869 Score: 123
Period size: 28 Copynumber: 3.3 Consensus size: 28
60813768 TGGCCCTTTT
* *
60813778 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCTCATTCATATGGCCCATC
*
60813806 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCTCATTCATATGGCCCATC
* *
60813834 AAGCCCTATCAT-ATTCATATGGCCCATC
1 AGGCCCAATC-TCATTCATATGGCCCATC
60813862 AGGCCCAA
1 AGGCCCAA
60813870 GTACTTCCCA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (28 bp):
AGGCCCAATCTCATTCATATGGCCCATC
Found at i:60815787 original size:20 final size:19
Alignment explanation
Indices: 60815755--60815820 Score: 54
Period size: 20 Copynumber: 3.7 Consensus size: 19
60815745 AAATGAGATA
*
60815755 TTTTGAAATCCATTTGTTG
1 TTTTGAAAACCATTTGTTG
60815774 TTTTGGAAAACCA-----TG
1 TTTT-GAAAACCATTTGTTG
*
60815789 -TTTGAAATCCATTTGTTG
1 TTTTGAAAACCATTTGTTG
60815807 TTTTGGAAAACCAT
1 TTTT-GAAAACCAT
60815821 GCCCTACTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 15
0.67 0.06 0.28
Matches are distributed among these distances:
13 7 0.19
14 3 0.08
15 2 0.06
18 2 0.06
19 7 0.19
20 15 0.42
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (19 bp):
TTTTGAAAACCATTTGTTG
Found at i:60815798 original size:33 final size:33
Alignment explanation
Indices: 60815756--60815821 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
60815746 AATGAGATAT
60815756 TTTGAAATCCATTTGTTGTTTTGGAAAACCATG
1 TTTGAAATCCATTTGTTGTTTTGGAAAACCATG
60815789 TTTGAAATCCATTTGTTGTTTTGGAAAACCATG
1 TTTGAAATCCATTTGTTGTTTTGGAAAACCATG
60815822 CCCTACTTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.42
Consensus pattern (33 bp):
TTTGAAATCCATTTGTTGTTTTGGAAAACCATG
Found at i:60816781 original size:27 final size:27
Alignment explanation
Indices: 60816738--60816812 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
60816728 AAGGGAAAAA
* *
60816738 TAGTCATTTTACCCTACAGGGGTATGT
1 TAGTCATTTTACACTACAAGGGTATGT
* *
60816765 TGGTCATTTTACACTACAAGGGTATTT
1 TAGTCATTTTACACTACAAGGGTATGT
**
60816792 TAGAAATTTTACACTACAAGG
1 TAGTCATTTTACACTACAAGG
60816813 TTATTTCGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (27 bp):
TAGTCATTTTACACTACAAGGGTATGT
Found at i:60816868 original size:27 final size:27
Alignment explanation
Indices: 60816824--60817283 Score: 484
Period size: 27 Copynumber: 17.2 Consensus size: 27
60816814 TATTTCGATA
* * **
60816824 AATTTT-CAAATCGGGGGTGTTTTGGT
1 AATTTTACAAATCGAGGGTATTTCAGT
* *
60816850 AATTTTACCAATCGAGGGTATTTCGGT
1 AATTTTACAAATCGAGGGTATTTCAGT
* *
60816877 AATTTTATAAATCG-GGAGTATTT-TGAT
1 AATTTTACAAATCGAGG-GTATTTCAG-T
* *
60816904 AATTTTACAAGTCGAGGGTGTTTCAGT
1 AATTTTACAAATCGAGGGTATTTCAGT
* * *
60816931 AATTTCACAAATCGGGGGTATTTCAAT
1 AATTTTACAAATCGAGGGTATTTCAGT
* *
60816958 AATTTTACAAATCGAGCGTATTTCGGT
1 AATTTTACAAATCGAGGGTATTTCAGT
*
60816985 AATTTCAC-AATCGAGGGTATTTC-GAT
1 AATTTTACAAATCGAGGGTATTTCAG-T
* *
60817011 AATTTTACAATTCGAGGGTATTTCAAT
1 AATTTTACAAATCGAGGGTATTTCAGT
* * *
60817038 AATTTCAC-AATTGAGGGTATTTTAGT
1 AATTTTACAAATCGAGGGTATTTCAGT
* *
60817064 AATTTTACAAATCGAGGTTGTTTCAGT
1 AATTTTACAAATCGAGGGTATTTCAGT
* *
60817091 AATTTTAAAAATCGAGGGTATTTTAGT
1 AATTTTACAAATCGAGGGTATTTCAGT
* * *
60817118 AATTTCA-AAATCAAGGGTATTTCGGT
1 AATTTTACAAATCGAGGGTATTTCAGT
** * * *
60817144 AATTTTACAAATTAATGGTGTTTCGGT
1 AATTTTACAAATCGAGGGTATTTCAGT
* * *
60817171 AATTTTACAAATTGAGGGTGTTTTAGT
1 AATTTTACAAATCGAGGGTATTTCAGT
* *
60817198 AATTTCACAAATTGAGGGTATTTCAGT
1 AATTTTACAAATCGAGGGTATTTCAGT
60817225 AATTTTACAAATCGAGGGTATTTCAGT
1 AATTTTACAAATCGAGGGTATTTCAGT
* *
60817252 AATTTTACAAATCGAGAGTGTTTCAGT
1 AATTTTACAAATCGAGGGTATTTCAGT
60817279 AATTT
1 AATTT
60817284 ATCTTTATTA
Statistics
Matches: 365, Mismatches: 59, Indels: 19
0.82 0.13 0.04
Matches are distributed among these distances:
25 1 0.00
26 74 0.20
27 287 0.79
28 3 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AATTTTACAAATCGAGGGTATTTCAGT
Found at i:60817037 original size:80 final size:81
Alignment explanation
Indices: 60816814--60817283 Score: 520
Period size: 80 Copynumber: 5.8 Consensus size: 81
60816804 ACTACAAGGT
* * ** * *
60816814 TATTTCGATAAATTTT-CAAATCGGGGGTGTTTTGGTAATTTTACCAATCGAGGGTATTTCGGTA
1 TATTTCGGT-AATTTTACAAATCGAGGGTGTTTCAGTAATTTTACAAATCGAGGGTATTTCAGTA
* *
60816878 ATTTTATAAATCG-GGAG
65 ATTTCACAAATCGAGG-G
* * * * * *
60816895 TATTTTGATAATTTTACAAGTCGAGGGTGTTTCAGTAATTTCACAAATCGGGGGTATTTCAATAA
1 TATTTCGGTAATTTTACAAATCGAGGGTGTTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAA
* *
60816960 TTTTACAAATCGAGCG
66 TTTCACAAATCGAGGG
* * * *
60816976 TATTTCGGTAATTTCAC-AATCGAGGGTATTTC-GATAATTTTACAATTCGAGGGTATTTCAATA
1 TATTTCGGTAATTTTACAAATCGAGGGTGTTTCAG-TAATTTTACAAATCGAGGGTATTTCAGTA
*
60817039 ATTTCAC-AATTGAGGG
65 ATTTCACAAATCGAGGG
** * * *
60817055 TATTTTAGTAATTTTACAAATCGAGGTTGTTTCAGTAATTTTAAAAATCGAGGGTATTTTAGTAA
1 TATTTCGGTAATTTTACAAATCGAGGGTGTTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAA
*
60817120 TTTCA-AAATCAAGGG
66 TTTCACAAATCGAGGG
** * * * * *
60817135 TATTTCGGTAATTTTACAAATTAATGGTGTTTCGGTAATTTTACAAATTGAGGGTGTTTTAGTAA
1 TATTTCGGTAATTTTACAAATCGAGGGTGTTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAA
*
60817200 TTTCACAAATTGAGGG
66 TTTCACAAATCGAGGG
* * * *
60817216 TATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGAGTGTTTCAGTAA
1 TATTTCGGTAATTTTACAAATCGAGGGTGTTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAA
60817281 TTT
66 TTT
60817284 ATCTTTATTA
Statistics
Matches: 327, Mismatches: 55, Indels: 14
0.83 0.14 0.04
Matches are distributed among these distances:
79 22 0.07
80 162 0.50
81 142 0.43
82 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
TATTTCGGTAATTTTACAAATCGAGGGTGTTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAA
TTTCACAAATCGAGGG
Found at i:60817643 original size:28 final size:28
Alignment explanation
Indices: 60817582--60817691 Score: 132
Period size: 28 Copynumber: 3.9 Consensus size: 28
60817572 GATGCACACT
* * *
60817582 TATTCATTTGGCCCCTTTAGGCCCAATC-
1 TATTCATATGG-CCCATCAGGCCCAATCA
* *
60817610 TCATTCACATGGCCCATCAAGCCCAATCA
1 T-ATTCATATGGCCCATCAGGCCCAATCA
*
60817639 TATTCATATGGCCCATCAGGCCCTATCA
1 TATTCATATGGCCCATCAGGCCCAATCA
*
60817667 CATTCATATGGCCCATCAGGCCCAA
1 TATTCATATGGCCCATCAGGCCCAA
60817692 CTACTTCCCA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
28 61 0.87
29 9 0.13
ACGTcount: A:0.25, C:0.35, G:0.14, T:0.26
Consensus pattern (28 bp):
TATTCATATGGCCCATCAGGCCCAATCA
Found at i:60817678 original size:56 final size:57
Alignment explanation
Indices: 60817582--60817691 Score: 150
Period size: 56 Copynumber: 1.9 Consensus size: 57
60817572 GATGCACACT
* * * *
60817582 TATTCATTTGGCCCCTTTAGGCCCAATCTCATTCACATGGCCCATCAAGCCCAATCA
1 TATTCATATGGCCCCATCAGGCCCAATCACATTCACATGGCCCATCAAGCCCAATCA
* * *
60817639 TATTCATATGG-CCCATCAGGCCCTATCACATTCATATGGCCCATCAGGCCCAA
1 TATTCATATGGCCCCATCAGGCCCAATCACATTCACATGGCCCATCAAGCCCAA
60817692 CTACTTCCCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
56 36 0.78
57 10 0.22
ACGTcount: A:0.25, C:0.35, G:0.14, T:0.26
Consensus pattern (57 bp):
TATTCATATGGCCCCATCAGGCCCAATCACATTCACATGGCCCATCAAGCCCAATCA
Found at i:60821128 original size:47 final size:47
Alignment explanation
Indices: 60821059--60821214 Score: 174
Period size: 47 Copynumber: 3.3 Consensus size: 47
60821049 AGCTTAAGAT
60821059 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
*** *
60821106 CGAATGGCCAATGTGATGAATGTGAAAGTACATACATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
** * * *
60821153 CGAATGGTTAATGTGAT-ATATGTGTAA--GTGAATATGGGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGTGTGTATATGTGATAAGGC
* *
60821198 TGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
60821215 AAAGTGTGCA
Statistics
Matches: 90, Mismatches: 17, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
45 19 0.21
46 6 0.07
47 65 0.72
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
Found at i:60821340 original size:39 final size:40
Alignment explanation
Indices: 60821285--60821369 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
60821275 AAATGAATTG
* * * *
60821285 TGCTGAGATTGCATCCGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
* *
60821324 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
60821364 TGCTGG
1 TGCTGG
60821370 TGAATTAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.18, C:0.22, G:0.32, T:0.28
Consensus pattern (40 bp):
TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:60823920 original size:40 final size:40
Alignment explanation
Indices: 60823866--60824220 Score: 541
Period size: 40 Copynumber: 8.9 Consensus size: 40
60823856 CTCACTGATG
* *
60823866 ATCC-GGCTAAGTCCCGAAGAGCATTAGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
60823905 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
60823945 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
60823985 ATCCGGGCTAAGTCTCGAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
60824025 ATCCGGGCTATGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
60824065 ATCCGGGCTAATTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * *
60824105 ATCTGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * * *
60824145 ATCAGGGTTAAGTTCCAAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
60824185 ATCCGGGCTAGGTCCCGAAGAGCATTCATGCTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
60824221 ATGTGTATTC
Statistics
Matches: 286, Mismatches: 29, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
39 4 0.01
40 282 0.99
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
Found at i:60824434 original size:25 final size:25
Alignment explanation
Indices: 60824384--60824434 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
60824374 TGTGTAACAA
* *
60824384 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
60824409 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
60824434 C
1 C
60824435 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:60828106 original size:47 final size:45
Alignment explanation
Indices: 60828037--60828186 Score: 186
Period size: 47 Copynumber: 3.4 Consensus size: 45
60828027 AGCTTAAGAT
*
60828037 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAA--GTGAATATGTGATAAGGC
60828084 CGAATGGCCAATGTGATGAATGTGAAAGT-ACATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGA-ATATGTGATAAGGC
*
60828129 CGAAT-G--AATGTGAT-ATATGTGTAAGTGAATATG-GATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGTGAATATGTGATAAGGC
*
60828170 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
60828187 AAAGTGTGCA
Statistics
Matches: 93, Mismatches: 3, Indels: 16
0.83 0.03 0.14
Matches are distributed among these distances:
41 14 0.15
42 22 0.24
43 1 0.01
44 3 0.03
45 26 0.28
47 27 0.29
ACGTcount: A:0.35, C:0.09, G:0.29, T:0.27
Consensus pattern (45 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGAATATGTGATAAGGC
Found at i:60828161 original size:42 final size:42
Alignment explanation
Indices: 60828046--60828176 Score: 151
Period size: 42 Copynumber: 3.0 Consensus size: 42
60828036 TCGAATGGCC
**
60828046 AATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCGAATGG
1 AATGTGATGAATGTGAAA--GTACATATGTGATAAGGCCGAAT-G
60828091 CCAATGTGATGAATGTGAAAGTACATATGTGATAAGGCCGAATG
1 --AATGTGATGAATGTGAAAGTACATATGTGATAAGGCCGAATG
*
60828135 AATGTGAT-ATATGTGTAAGTGA-ATATG-GATAAGGCCGAATG
1 AATGTGATGA-ATGTGAAAGT-ACATATGTGATAAGGCCGAATG
60828176 A
1 A
60828177 CCAATTGTGA
Statistics
Matches: 79, Mismatches: 3, Indels: 10
0.86 0.03 0.11
Matches are distributed among these distances:
41 16 0.20
42 22 0.28
43 1 0.01
44 1 0.01
45 21 0.27
47 18 0.23
ACGTcount: A:0.36, C:0.07, G:0.30, T:0.27
Consensus pattern (42 bp):
AATGTGATGAATGTGAAAGTACATATGTGATAAGGCCGAATG
Found at i:60828312 original size:39 final size:40
Alignment explanation
Indices: 60828257--60828341 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
60828247 AAATGAATTG
* * * *
60828257 TGCTGAGATTGCATCCGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
* *
60828296 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
60828336 TGCTGG
1 TGCTGG
60828342 TGAATTAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.18, C:0.22, G:0.32, T:0.28
Consensus pattern (40 bp):
TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:60835506 original size:47 final size:46
Alignment explanation
Indices: 60835432--60835702 Score: 203
Period size: 46 Copynumber: 5.8 Consensus size: 46
60835422 TGGGTAAGGT
* *
60835432 GCCAATGCCAT-TCCCAGGCACGATCTTACACTGGCTCAT-ATCTCAA
1 GCCAATG-CATGTCCCAGACATG-TCTTACACTGGCTCATCATCTCAA
* * * * *
60835478 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACT-TTCATCTCGTA
1 GCCAATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTC-AA
* * * *
60835526 GCCAATGCATGTCCCAAACATGTCTTACACTGGCTTA-CGTCTCGAG
1 GCCAATGCATGTCCCAGACATGTCTTACACTGGCTCATCATCTC-AA
* * *
60835572 GCCAATGCATGTCCCAGAGATGTCTTACACTAGCTC-TCGTCTCAA
1 GCCAATGCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAA
* * * * ***
60835617 TGCAAATGCCATGTCCCAGACATGGTCATATACTGGCTC-TCATAATGTG
1 -GCCAATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATCAT-CTCAA
* *
60835666 GCCGATGCATGTCCCAGGCATGTCTTACACTGGCTCA
1 GCCAATGCATGTCCCAGACATGTCTTACACTGGCTCA
60835703 CGCAAGTGAC
Statistics
Matches: 179, Mismatches: 35, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
45 1 0.01
46 86 0.48
47 64 0.36
48 27 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCAATGCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAA
Found at i:60835569 original size:46 final size:47
Alignment explanation
Indices: 60835486--60835701 Score: 210
Period size: 46 Copynumber: 4.6 Consensus size: 47
60835476 AAGTCGATGC
* *
60835486 CATGTCCCAGACATGGTCTTACACTGACTTTCATCTCGTA-GCCAATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGTAGGCCAATG
* *
60835533 CATGTCCCAAACATGTCTTACACTGGCT-TACGTCTCG-AGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGTAGGCCAATG
* * * * * *
60835579 CATGTCCCAGAGATGTCTTACACTAGCTCTCGTCTC-AATGCAAATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGTAGGCCAATG
* * * *
60835625 CCATGTCCCAGACATGGTCATATACTGGCTCTCATAAT-GT-GGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGTAGGCCAATG
*
60835673 CATGTCCCAGGCATGTCTTACACTGGCTC
1 CATGTCCCAGACATGTCTTACACTGGCTC
60835702 ACGCAAGTGA
Statistics
Matches: 140, Mismatches: 21, Indels: 17
0.79 0.12 0.10
Matches are distributed among these distances:
45 2 0.01
46 77 0.55
47 40 0.29
48 20 0.14
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGTAGGCCAATG
Found at i:60838229 original size:47 final size:47
Alignment explanation
Indices: 60838163--60838591 Score: 696
Period size: 47 Copynumber: 9.1 Consensus size: 47
60838153 GAAATGATAG
60838163 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
60838210 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
60838259 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
60838306 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
60838353 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTGTATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
60838400 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60838447 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60838494 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
60838541 CAGGGCCGAGTGGCCGACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60838588 TAAG
1 TAAG
60838592 TCCCGAAGGG
Statistics
Matches: 360, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 314 0.87
49 46 0.13
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:60838766 original size:37 final size:37
Alignment explanation
Indices: 60838710--60838788 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
60838700 CCGAGCTCTA
* *
60838710 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
60838747 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
60838784 AAGAC
1 AAGAC
60838789 TTCGTAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:60843519 original size:22 final size:22
Alignment explanation
Indices: 60843491--60843537 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
60843481 AAGGTTGTAG
* *
60843491 ATCATTGGAGCATTGTCTCACT
1 ATCATTGGAGCATCGTCACACT
60843513 ATCATTGGAGCATCGTCACACT
1 ATCATTGGAGCATCGTCACACT
60843535 ATC
1 ATC
60843538 TACTAGCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (22 bp):
ATCATTGGAGCATCGTCACACT
Found at i:60845544 original size:24 final size:24
Alignment explanation
Indices: 60845482--60845545 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
60845472 ATTGAGTTTG
*
60845482 AAACAGTAAGCTCTAACAAACTGA
1 AAACAGTAAGCTCTTACAAACTGA
* * *
60845506 GAACAGTAAGCTCTTACGAGCTGA
1 AAACAGTAAGCTCTTACAAACTGA
60845530 AAACAGTAAGCTCTTA
1 AAACAGTAAGCTCTTA
60845546 TGAACTAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.20
Consensus pattern (24 bp):
AAACAGTAAGCTCTTACAAACTGA
Found at i:60851490 original size:27 final size:27
Alignment explanation
Indices: 60851433--60851522 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
60851423 TACTGAAATG
* * * *
60851433 CCCTTGATTTGTAGAATTACCATTTTT
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
60851460 CCCTCGATTTATAGAATTATCGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
60851487 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
60851514 CCCTCGATT
1 CCCTCGATT
60851523 GTGAAATTAC
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:60851618 original size:27 final size:27
Alignment explanation
Indices: 60851578--60851681 Score: 104
Period size: 27 Copynumber: 3.8 Consensus size: 27
60851568 ACTAGTTTGT
60851578 AAAATTACCA-AAATACCCTTGATTTAC
1 AAAATTA-CAGAAATACCCTTGATTTAC
*
60851605 AAAATTACAGAAATACCGTTGACTTT-C
1 AAAATTACAGAAATACCCTTGA-TTTAC
* * * *
60851632 GAAAAATTATAAAAATACCATTGGTTTAC
1 --AAAATTACAGAAATACCCTTGATTTAC
*
60851661 AAAATTACTGAAATACCCTTG
1 AAAATTACAGAAATACCCTTG
60851682 GTTTGTAGAT
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
26 2 0.03
27 36 0.57
28 6 0.10
29 19 0.30
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTGATTTAC
Found at i:60851769 original size:27 final size:27
Alignment explanation
Indices: 60851739--60851799 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
60851729 ACCCCTAATA
*
60851739 GGTAAAAAGACCGTAA-AGCCTCTGTAG
1 GGTAAAAAGACCGTAATACCCT-TGTAG
** *
60851766 GGTAAAGTGACCGTAATACCCTTGTAT
1 GGTAAAAAGACCGTAATACCCTTGTAG
60851793 GGTAAAA
1 GGTAAAA
60851800 TGATGAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 24 0.86
28 4 0.14
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (27 bp):
GGTAAAAAGACCGTAATACCCTTGTAG
Found at i:60852635 original size:25 final size:24
Alignment explanation
Indices: 60852597--60852666 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
60852587 AGGAAGTGCT
*
60852597 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
60852621 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
60852646 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
60852667 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:60852679 original size:24 final size:24
Alignment explanation
Indices: 60852596--60852679 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
60852586 GAGGAAGTGC
* *
60852596 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
60852621 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
60852645 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
60852669 TAAAAGAGGCT
1 TAAAAG-GGCT
60852680 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:60852873 original size:42 final size:42
Alignment explanation
Indices: 60852814--60852947 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
60852804 TAGTCTTCCC
60852814 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
60852856 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
60852898 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
60852940 AAATGGGC
1 AAATGGGC
60852948 CTAAGGGCCA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:60853006 original size:31 final size:31
Alignment explanation
Indices: 60852971--60853085 Score: 189
Period size: 31 Copynumber: 3.7 Consensus size: 31
60852961 CGTTTACAGT
60852971 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
60853002 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
60853033 AAAGGCTTTGGCCCAGTGATATGATTTAT-A
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
60853063 GAAAGGCTTCGGCCCAGT-ATATG
1 -AAAGGCTTCGGCCCAGTGATATG
60853086 TCAAGACTAA
Statistics
Matches: 79, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
30 5 0.06
31 74 0.94
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:60857885 original size:37 final size:37
Alignment explanation
Indices: 60857825--60857902 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
60857815 TATTACGAAG
* * *
60857825 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
60857862 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
60857899 TCTT
1 TCTT
60857903 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:60858090 original size:47 final size:47
Alignment explanation
Indices: 60858021--60858435 Score: 706
Period size: 47 Copynumber: 8.7 Consensus size: 47
60858011 CCCTTCGGGA
* * * * *
60858021 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60858068 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60858115 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60858162 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60858211 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60858260 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60858307 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60858354 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
60858401 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
60858436 AGAATCCTAA
Statistics
Matches: 357, Mismatches: 8, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
46 1 0.00
47 260 0.73
49 96 0.27
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60860746 original size:85 final size:85
Alignment explanation
Indices: 60860617--60860795 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
60860607 TATTTTATTG
*
60860617 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
60860682 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
60860702 CCCATGCTCTTTATTTTATTGATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
60860767 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
60860787 CCCATGCTC
1 CCCATGCTC
60860796 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:60863601 original size:79 final size:79
Alignment explanation
Indices: 60863500--60863682 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 79
60863490 TACTCGTTCA
* * *
60863500 AATGCCTTCGAGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCG-GGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
60863563 ATTTAGTAAC-TCGCACC
63 ATATAGTAACTTAGCA-C
**
60863580 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
* *
60863645 TGGTCACTTAGCAC
66 TAGTAACTTAGCAC
*
60863659 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGA
60863683 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.67
80 26 0.29
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
TAGTAACTTAGCAC
Found at i:60863682 original size:40 final size:40
Alignment explanation
Indices: 60863479--60863682 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
60863469 CGGAATTTAA
** * *
60863479 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGAGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60863519 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60863559 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
60863598 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
60863638 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
60863678 CCGGA
1 CCGGA
60863683 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 93 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:60867284 original size:250 final size:239
Alignment explanation
Indices: 60866714--60867289 Score: 710
Period size: 250 Copynumber: 2.4 Consensus size: 239
60866704 AGACAGTGTA
60866714 ATATATGTG--ATAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AAGG
1 ATATATGTGAAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAGG
*
60866775 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 CCTAATGG-CGATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
*
60866840 GAATGTGAAAGTGTATATCTGTGATAAGGCCTAATCGGCCGATGTGACTGAAATGGTGAAGTGTA
129 GAATGTGAAAGTGTATATCTGTGATAAGGCCTAATCAGCCGATGTGACTGAAATGGTGAAGTGTA
* * *
60866905 TATCTGTGATAAGGCCTATGGCCGATGTAATGAATGTGAAAGCTGT
194 TATCTGTGATAAGGCCTATCGACGATGTAATGAATGTGAAAGCTAT
* *
60866951 ATATATGTGAAATAAGGCCTAATGGCCGATTGTGATGAATGTGAAAAGTGTATATGTGTGATATA
1 ATATATGTGAAATAAGGCCTAATGGCCGA-TGTGATGAATGTG-AAAGTGTATATATGTGATAAA
*
60867016 GGCCTAATGGCTGATGTGATGAATGGTG-A-TGTATCATGTGTTGATAAGGCCTAATAGCCGATG
64 GGCCTAATGGC-GATGTGATGAAT-GTGAAGTGTAT-ATATG-TGATAAGGCCTAATAGCCGATG
* *
60867079 TGCATGAATGTGAGAGTGTGTATATTATTGTGATAAGGGCCT-AT-AGCCGATGTGA-TG-AAT-
125 TG-ATGAATGTGA-A-AGTGTATA-T-CTGTGATAA-GGCCTAATCAGCCGATGTGACTGAAATG
* * *
60867139 GTGAAAGTTTGTATATATTGTGATTAAGGCCTAATCGACGATGTGATGAATGTGAAAGTTAT
184 GTG-AAG--TGTATAT-CTGTGA-TAAGGCCT-ATCGACGATGTAATGAATGTGAAAGCTAT
*
60867201 ATATAT-TGTTAATAATGGCCTAATGGCCGATGTGATCGAAATGTG-AAGTGTATTATATGTGAT
1 ATATATGTG-AAATAA-GGCCTAATGGCCGATGTGAT-G-AATGTGAAAGTGTA-TATATGTGAT
60867264 AAAGGCCTAATGGCGATGTGATGAAT
61 AAAGGCCTAATGGCGATGTGATGAAT
60867290 CGTGGGGAAA
Statistics
Matches: 296, Mismatches: 16, Indels: 41
0.84 0.05 0.12
Matches are distributed among these distances:
237 9 0.03
239 4 0.01
240 13 0.04
241 18 0.06
242 23 0.08
243 46 0.16
244 16 0.05
245 7 0.02
246 9 0.03
247 18 0.06
248 15 0.05
249 15 0.05
250 60 0.20
251 37 0.12
252 6 0.02
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.31
Consensus pattern (239 bp):
ATATATGTGAAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAGG
CCTAATGGCGATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
ATGTGAAAGTGTATATCTGTGATAAGGCCTAATCAGCCGATGTGACTGAAATGGTGAAGTGTATA
TCTGTGATAAGGCCTATCGACGATGTAATGAATGTGAAAGCTAT
Found at i:60867312 original size:50 final size:47
Alignment explanation
Indices: 60866708--60867312 Score: 699
Period size: 47 Copynumber: 12.3 Consensus size: 47
60866698 CAACCAAGAC
60866708 AGTGTAATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGT-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
60866755 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
60866802 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
60866849 AGTGTATATCTGTGATAAGGCCTAATCGGCCGATGTGACTGAAATGGTG-A
1 AGTGTATATATGTGATAAGGCCTAAT-GGCCGATGTGA-TG-AAT-GTGAA
* *
60866899 AGTGTATATCTGTGATAAGGCCT-ATGGCCGATGTAATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
60866945 AGCTGTATATATGTGAAATAAGGCCTAATGGCCGATTGTGATGAATGTGAAA
1 AG-TGTATATATGTG--ATAAGGCCTAATGGCCGA-TGTGATGAATGTG-AA
* *
60866997 AGTGTATATGTGTGATATAGGCCTAATGGCTGATGTGATGAATGGTG--
1 AGTGTATATATGTGATA-AGGCCTAATGGCCGATGTGATGAAT-GTGAA
* *
60867044 A-TGTATCATGTGTTGATAAGGCCTAATAGCCGATGTGCATGAATGTGAGA
1 AGTGTAT-ATATG-TGATAAGGCCTAATGGCCGATGTG-ATGAATGTGA-A
* *
60867094 GTGTGTATATTATTGTGATAAGGGCCT-ATAGCCGATGTGATGAATGTGAA
1 -AGTGTATA-TA-TGTGATAA-GGCCTAATGGCCGATGTGATGAATGTGAA
* *
60867144 AGTTTGTATATATTGTGATTAAGGCCTAATCGACGATGTGATGAATGTGAA
1 AG--TGTATATA-TGTGA-TAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
60867195 AGTTATATATATTGTTAATAATGGCCTAATGGCCGATGTGATCGAAATGTG-A
1 AG-TGTATATA-TG-TGATAA-GGCCTAATGGCCGATGTGAT-G-AATGTGAA
60867247 AGTGTATTATATGTGATAAAGGCCTAATGG-CGATGTGATGAATCGTGGGGAA
1 AGTGTA-TATATGTGAT-AAGGCCTAATGGCCGATGTGATGAAT-GT---GAA
60867299 AGTGTATAT-TGTGA
1 AGTGTATATATGTGA
60867313 CAACAGGGCC
Statistics
Matches: 499, Mismatches: 19, Indels: 77
0.84 0.03 0.13
Matches are distributed among these distances:
45 3 0.01
46 24 0.05
47 147 0.29
48 35 0.07
49 36 0.07
50 98 0.20
51 100 0.20
52 43 0.09
53 13 0.03
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.31
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:60876406 original size:79 final size:81
Alignment explanation
Indices: 60876297--60876479 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
60876287 TACTCGTTCA
* *
60876297 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
60876360 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
60876377 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
60876440 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
60876456 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
60876480 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:60876479 original size:40 final size:40
Alignment explanation
Indices: 60876276--60876479 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
60876266 CGGAATTTAA
** *
60876276 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60876316 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60876356 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
60876395 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
60876435 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
60876475 CCGGA
1 CCGGA
60876480 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:60890664 original size:40 final size:40
Alignment explanation
Indices: 60890581--60890836 Score: 344
Period size: 40 Copynumber: 6.5 Consensus size: 40
60890571 CAACCAAGTA
** *
60890581 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
60890619 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60890659 CCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
*
60890699 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
60890739 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
60890779 CCTTCAGG-CTTAGCCCGGA-ATTAGTCACTTGCACAGATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
60890818 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
60890837 TTATCATCCG
Statistics
Matches: 195, Mismatches: 16, Indels: 12
0.87 0.07 0.05
Matches are distributed among these distances:
38 14 0.07
39 45 0.23
40 134 0.69
41 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:60893323 original size:48 final size:48
Alignment explanation
Indices: 60893116--60893349 Score: 138
Period size: 48 Copynumber: 4.9 Consensus size: 48
60893106 CATAGTAGGG
* ** * * * **
60893116 TGCCAATGCCATATCCCGGATATGGTCTTACATGGGACCACTTATTGA
1 TGCCAATGTCATATCCCAAACATGGTCTTACATGGGATCACATAACGA
* * * *
60893164 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGAT--CA-AAC-A
1 TGCCAATGTCATATCCCAAACATGGTCTTACATGGGATCACATAACGA
* * * * * * * * * *
60893208 TATCGAA-GTTCATAGCCC-AGCTATGGTCTTATACGATGTTCTCATATCGA
1 T-GCCAATG-TCATATCCCAAAC-ATGGTCTTACATG-GGATCACATAACGA
* * *
60893258 TACCAATGTCTTGTCCCAAACATGGTCTTACATGGGATCACATAACGA
1 TGCCAATGTCATATCCCAAACATGGTCTTACATGGGATCACATAACGA
* * *
60893306 TGCCAATGTCATATCCCAAACAAGGTTTTACATAGGATCACATA
1 TGCCAATGTCATATCCCAAACATGGTCTTACATGGGATCACATA
60893350 TCAATGTTGA
Statistics
Matches: 138, Mismatches: 38, Indels: 20
0.70 0.19 0.10
Matches are distributed among these distances:
44 4 0.03
45 21 0.15
46 3 0.02
48 83 0.60
49 22 0.16
50 5 0.04
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (48 bp):
TGCCAATGTCATATCCCAAACATGGTCTTACATGGGATCACATAACGA
Found at i:60905824 original size:26 final size:25
Alignment explanation
Indices: 60905716--60905834 Score: 90
Period size: 24 Copynumber: 4.8 Consensus size: 25
60905706 TCGAGCTATG
*
60905716 ATCAGTAAGCTCCTT-CTGAGTTGATGA
1 ATCAGTAAGCT-CTTAC-GAGCTGA-GA
*
60905743 AT-AGCAAGCTCATT--GAGCTG-GA
1 ATCAGTAAGCTC-TTACGAGCTGAGA
*
60905765 A-CAGTAAGCTCTAACGAGCTGAGA
1 ATCAGTAAGCTCTTACGAGCTGAGA
* *
60905789 AT-AGTAAGCTCTTACAAGCTGATA
1 ATCAGTAAGCTCTTACGAGCTGAGA
*
60905813 TATCAGTAAGCTCATACGAGCT
1 -ATCAGTAAGCTCTTACGAGCT
60905835 AAGGTGAGTC
Statistics
Matches: 75, Mismatches: 9, Indels: 17
0.74 0.09 0.17
Matches are distributed among these distances:
21 1 0.01
22 11 0.15
23 6 0.08
24 27 0.36
25 3 0.04
26 25 0.33
27 2 0.03
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (25 bp):
ATCAGTAAGCTCTTACGAGCTGAGA
Found at i:60911858 original size:31 final size:31
Alignment explanation
Indices: 60911823--60911881 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
60911813 ATAATTTTTG
60911823 AACTATTTAAAAGTTTTCATTCAAGTCATTA
1 AACTATTTAAAAGTTTTCATTCAAGTCATTA
* *
60911854 AACTATTTAAAAGTTTTTATTTAAGTCA
1 AACTATTTAAAAGTTTTCATTCAAGTCA
60911882 CTGAGTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (31 bp):
AACTATTTAAAAGTTTTCATTCAAGTCATTA
Found at i:60918598 original size:12 final size:12
Alignment explanation
Indices: 60918565--60918598 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
60918555 TTGCATAAGT
60918565 ATTTTTTGTTGAA
1 ATTTTTT-TTGAA
*
60918578 ATTTGTTTTGAA
1 ATTTTTTTTGAA
60918590 ATTTTTTTT
1 ATTTTTTTT
60918599 ATAAGAGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.68
Consensus pattern (12 bp):
ATTTTTTTTGAA
Found at i:60926049 original size:11 final size:11
Alignment explanation
Indices: 60926033--60926062 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
60926023 GTTTGAAGAC
60926033 GGACTTAATGA
1 GGACTTAATGA
60926044 GGACTTAATGA
1 GGACTTAATGA
*
60926055 AGACTTAA
1 GGACTTAA
60926063 GAGTGTTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (11 bp):
GGACTTAATGA
Found at i:60933971 original size:48 final size:49
Alignment explanation
Indices: 60933891--60933989 Score: 164
Period size: 48 Copynumber: 2.0 Consensus size: 49
60933881 CTAAGAGTAG
60933891 ATCTAACAGAATTAAGCAGAGTTGATTGCACGCCTAGAGATAGGGT-AC
1 ATCTAACAGAATTAAGCAGAGTTGATTGCACGCCTAGAGATAGGGTGAC
* * *
60933939 ATCTGACATAATTAAGCGGAGTTGATTGCACGCCTAGAGATAGGGTGAC
1 ATCTAACAGAATTAAGCAGAGTTGATTGCACGCCTAGAGATAGGGTGAC
60933988 AT
1 AT
60933990 AATTTTTTCG
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
48 43 0.91
49 4 0.09
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.24
Consensus pattern (49 bp):
ATCTAACAGAATTAAGCAGAGTTGATTGCACGCCTAGAGATAGGGTGAC
Found at i:60943796 original size:39 final size:39
Alignment explanation
Indices: 60943753--60943868 Score: 169
Period size: 39 Copynumber: 3.0 Consensus size: 39
60943743 CCGGACATAT
* * * *
60943753 TTCCAGCACGTAGCCTGTGGACCTTAAGTCTAGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAA
*
60943792 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAA
* *
60943831 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATA
60943869 CATCACTGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAA
Found at i:60943798 original size:78 final size:78
Alignment explanation
Indices: 60943709--60943860 Score: 191
Period size: 78 Copynumber: 1.9 Consensus size: 78
60943699 TTAAACCTGG
* * * * *
60943709 TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCCTGTG
1 TATAATACCAGCAC-ATAGCCTGC-GGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTGCG
*
60943772 GACCTTAAGTCTAGT
64 GACCCTAAGTCTAGT
* * *
60943787 TATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TATAATACCAGCACATAGCCTGCGGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
60943852 CCCTAAGTC
66 CCCTAAGTC
60943861 CGGATATACA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
77 4 0.06
78 59 0.94
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (78 bp):
TATAATACCAGCACATAGCCTGCGGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
CCCTAAGTCTAGT
Found at i:60952767 original size:28 final size:29
Alignment explanation
Indices: 60952732--60952787 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
60952722 TTAATAAAAA
*
60952732 TGTAAA-TTAGGGGCTAAATTGTGAAATG
1 TGTAAATTTAGGGGCTAAAATGTGAAATG
* *
60952760 TGTAAATTTAGTGGTTAAAATGTGAAAT
1 TGTAAATTTAGGGGCTAAAATGTGAAAT
60952788 AAATGAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.38, C:0.02, G:0.25, T:0.36
Consensus pattern (29 bp):
TGTAAATTTAGGGGCTAAAATGTGAAATG
Found at i:60953967 original size:14 final size:15
Alignment explanation
Indices: 60953948--60953977 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
60953938 ATATTTGGCT
60953948 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
60953962 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
60953977 T
1 T
60953978 CTTGATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.10, G:0.13, T:0.57
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:60968052 original size:23 final size:23
Alignment explanation
Indices: 60968021--60968076 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
60968011 CTTTTCGTGC
*
60968021 AGCTTCAACTGTCTCGAGGCATA
1 AGCTACAACTGTCTCGAGGCATA
60968044 AGCTACAACTGTCTCGAGGCATA
1 AGCTACAACTGTCTCGAGGCATA
60968067 AGCTACAACT
1 AGCTACAACT
60968077 TTGCCTTCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (23 bp):
AGCTACAACTGTCTCGAGGCATA
Found at i:60971752 original size:43 final size:42
Alignment explanation
Indices: 60971654--60971774 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 42
60971644 TAGGGTTACT
* **
60971654 GAGATTACGTGTAAGACCATATTTGGGATATGGCATCGATTT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
* * *
60971696 GTAGCTT-CGTGTAAGACCATAGCTGGGCTATTGGCATCGATAC
1 G-AGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATAC
* *
60971739 GAGATTACATGTAATACCATATCTGGGATATGGCAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCAT
60971775 TTGTACTGTA
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.31
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:60975584 original size:43 final size:43
Alignment explanation
Indices: 60975525--60975652 Score: 111
Period size: 43 Copynumber: 3.0 Consensus size: 43
60975515 CATTGACTTA
* * * *
60975525 TGATTTACGTGTAAGAC-CATGTTTGGGACATTGGCATCGTATT
1 TGATTTACGTATAAGACAC-TATCTGGGACAGTGGCATCGTATT
* *
60975568 TGATTTTCGTATAAGACACTATCTGGGACAGTGGCATCGATATA
1 TGATTTACGTATAAGACACTATCTGGGACAGTGGCATCG-TATT
* * *
60975612 TG-TTTACATGTAAGACCAC-ATCTGGGAC-GTTGGCATTGTAT
1 TGATTTACGTATAAGA-CACTATCTGGGACAG-TGGCATCGTAT
60975653 GACCTTTCTG
Statistics
Matches: 71, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
42 4 0.06
43 58 0.82
44 9 0.13
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
TGATTTACGTATAAGACACTATCTGGGACAGTGGCATCGTATT
Found at i:60979833 original size:39 final size:40
Alignment explanation
Indices: 60979736--60979917 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
60979726 AATGATGTCC
* * * *
60979736 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCT
*
60979776 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCT
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCT
* * *
60979816 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCT
* *
60979855 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCT
*
60979895 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
60979918 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCT
Found at i:60979939 original size:79 final size:79
Alignment explanation
Indices: 60979786--60979950 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
60979776 GGACTAAGAT
* **
60979786 CCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACTGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
60979851 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
60979865 CCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACTGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
60979928 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
60979944 CCGAAGG
1 CCGAAGG
60979951 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACTGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:60987859 original size:79 final size:81
Alignment explanation
Indices: 60987723--60987905 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
60987713 TCGAATGATG
* *
60987723 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
60987787 TGTGCGTGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
60987802 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
60987864 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
60987882 ACTGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
60987906 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:60987914 original size:40 final size:40
Alignment explanation
Indices: 60987723--60987907 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
60987713 TCGAATGATG
* * * *
60987723 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
60987763 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGTGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60987803 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60987842 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
60987883 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60987908 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60987929 original size:79 final size:79
Alignment explanation
Indices: 60987776--60987930 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
60987766 GGACTAAGAT
* * **
60987776 CCGAAGGCATTTGTGCGTGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
60987841 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
60987855 CCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
60987918 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
60987931 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:60991237 original size:23 final size:22
Alignment explanation
Indices: 60991210--60991254 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
60991200 TTTGATCGTC
*
60991210 AGAAATCATATGAAGATTTGAAA
1 AGAAAACATATGAA-ATTTGAAA
* *
60991233 AGAAAAGATATTAAATTTGAAA
1 AGAAAACATATGAAATTTGAAA
60991255 TCGGCGACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.56, C:0.02, G:0.16, T:0.27
Consensus pattern (22 bp):
AGAAAACATATGAAATTTGAAA
Found at i:60994603 original size:27 final size:26
Alignment explanation
Indices: 60994555--60994606 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60994545 GTGAGGCTGC
*
60994555 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
60994581 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
60994607 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:61000904 original size:27 final size:26
Alignment explanation
Indices: 61000856--61000915 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
61000846 ACGAGGCTGC
*
61000856 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
61000883 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
61000909 CAGATAT
1 CAGATAT
61000916 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:61000928 original size:33 final size:32
Alignment explanation
Indices: 61000877--61000940 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
61000867 ACGAAGTCAC
* *
61000877 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
61000909 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
61000941 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:61006688 original size:22 final size:22
Alignment explanation
Indices: 61006663--61006715 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 22
61006653 ACACAATGAG
* *
61006663 CCAACATAA-ACCAACATTTTGA
1 CCAACATAAGAAC-ACAATTTGA
61006685 CCAAGTCATAAGAACACAATTTGA
1 CCAA--CATAAGAACACAATTTGA
61006709 CCAACAT
1 CCAACAT
61006716 TTTGAGCCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
22 7 0.27
24 17 0.65
25 2 0.08
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (22 bp):
CCAACATAAGAACACAATTTGA
Found at i:61008101 original size:43 final size:43
Alignment explanation
Indices: 61008040--61008125 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
61008030 GTCACAGGCA
* * * *
61008040 TCGCATCTATAATAAACTCGGACCACTTAACGAGCTCGGATGC
1 TCGCATCCATAATAAACTCAGACCACTCAACGAGCTCAGATGC
*
61008083 TCGCATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGC
1 TCGCATCCATAATAAACTCAGACCACTCAACGAGCTCAGATGC
61008126 CACATAACTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.21
Consensus pattern (43 bp):
TCGCATCCATAATAAACTCAGACCACTCAACGAGCTCAGATGC
Found at i:61019417 original size:26 final size:26
Alignment explanation
Indices: 61019381--61019433 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
61019371 GATTTCAAGT
61019381 GACCGAATGGAATACCTAATTCCTTG
1 GACCGAATGGAATACCTAATTCCTTG
61019407 GACCGAATGGAATACCTAATTCCTTG
1 GACCGAATGGAATACCTAATTCCTTG
61019433 G
1 G
61019434 CTTTCTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GACCGAATGGAATACCTAATTCCTTG
Found at i:61021218 original size:30 final size:30
Alignment explanation
Indices: 61021183--61021239 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
61021173 CACACAAGTG
*
61021183 TGTTTCTAGGAC-GTGTGTGAGACACGGGCA
1 TGTTTCTAGG-CTGTGTGTGACACACGGGCA
61021213 TGTTTCTAGGCTGTGTGTGACACACGG
1 TGTTTCTAGGCTGTGTGTGACACACGG
61021240 CTTGCCCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.30
Consensus pattern (30 bp):
TGTTTCTAGGCTGTGTGTGACACACGGGCA
Found at i:61032506 original size:6 final size:6
Alignment explanation
Indices: 61032488--61032587 Score: 71
Period size: 6 Copynumber: 16.3 Consensus size: 6
61032478 AAGAAACATT
* *
61032488 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAGT ATCAGGTA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * * * *
61032538 A-CAGA ATCAAA ATCAAA ATCGGT ATCAGGTA A-CAGA ATCAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
61032586 AT
1 AT
61032588 GTGAATGCAA
Statistics
Matches: 74, Mismatches: 12, Indels: 16
0.73 0.12 0.16
Matches are distributed among these distances:
5 5 0.07
6 60 0.81
7 7 0.09
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:61032546 original size:31 final size:31
Alignment explanation
Indices: 61032508--61032587 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
61032498 GAATCAGAAT
* *
61032508 CAGAATCAGAATCAGAATTAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
* *
61032539 CAGAATCAAAATCAAAATCGGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
61032570 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
61032588 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:61032753 original size:25 final size:26
Alignment explanation
Indices: 61032719--61032818 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
61032709 GCTCAGTTAT
*
61032719 CAGATATTGT-G-ATAGTCACCAGATA
1 CAGATATTGTGGCATAGCCACCAGA-A
*
61032744 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCATAGCCACCAGAA
61032770 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCATAGCCACCAG-AA
* * *
61032798 TAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCATAGCCAC
61032819 TTAACAGAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.15
26 8 0.12
27 40 0.62
28 7 0.11
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCATAGCCACCAGAA
Found at i:61032803 original size:54 final size:51
Alignment explanation
Indices: 61032719--61032818 Score: 128
Period size: 54 Copynumber: 1.9 Consensus size: 51
61032709 GCTCAGTTAT
* * * *
61032719 CAGATATTGTGATAGTCACCAGATACAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGATAGCCACCAGAAACAGATAATGTGGCAAAGCCACCAGAA
*
61032770 CAGATATTTGTGGCATAGCCACCAGAAATAGATAATGTGGCAAAGCCAC
1 CAGATA-TTGT-G-ATAGCCACCAGAAACAGATAATGTGGCAAAGCCAC
61032819 TTAACAGAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
51 6 0.15
52 4 0.10
53 1 0.02
54 30 0.73
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (51 bp):
CAGATATTGTGATAGCCACCAGAAACAGATAATGTGGCAAAGCCACCAGAA
Found at i:61033004 original size:22 final size:23
Alignment explanation
Indices: 61032976--61033037 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
61032966 GCAAATACGT
*
61032976 TTGGCACATAGCCATAAT-TAGG
1 TTGGCACAAAGCCATAATGTAGG
*
61032998 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGTAGG
*
61033020 TTGACACAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
61033038 CAGAAGGCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGTAGG
Found at i:61035966 original size:22 final size:23
Alignment explanation
Indices: 61035939--61036018 Score: 69
Period size: 22 Copynumber: 3.5 Consensus size: 23
61035929 CATGCATATG
61035939 TGTGAT-AATGCCGAATGGCCAA
1 TGTGATGAATGCCGAATGGCCAA
* *
61035961 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGATGAATGCCG-A-ATGGC-CA-A
*
61035986 TGTGAT-AAGGCCGAATGGCCAA
1 TGTGATGAATGCCGAATGGCCAA
61036008 TGTGATGAATG
1 TGTGATGAATG
61036019 TGAACATGCA
Statistics
Matches: 44, Mismatches: 6, Indels: 15
0.68 0.09 0.23
Matches are distributed among these distances:
22 14 0.32
23 13 0.30
24 9 0.20
25 8 0.18
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (23 bp):
TGTGATGAATGCCGAATGGCCAA
Found at i:61036098 original size:47 final size:47
Alignment explanation
Indices: 61035819--61036083 Score: 397
Period size: 47 Copynumber: 5.6 Consensus size: 47
61035809 TTAGGATTTT
** * *
61035819 ATGTGATGAATGTGAATGTGTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
61035866 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
61035913 ATGTGATGAATATGAGCATGCATATGTGTGATAATGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
61035960 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
61036007 ATGTGATGAATGTGAACATGCATTTATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
61036054 ATGTGATGAACGTGAA-AGTGTATATATGTG
1 ATGTGATGAATGTGAACA-TGCATATATGTG
61036084 GCGAAGCCGA
Statistics
Matches: 200, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 199 1.00
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:61036365 original size:37 final size:37
Alignment explanation
Indices: 61036315--61036386 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
61036305 GGAAATATAT
61036315 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
61036352 TCCAGGTAAGACCCGATGACTTCGTGTGGAGATTT
1 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTT
61036387 CGTTTGAGCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (37 bp):
TCCAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:61037603 original size:27 final size:27
Alignment explanation
Indices: 61037546--61038183 Score: 819
Period size: 27 Copynumber: 24.0 Consensus size: 27
61037536 AGGGCAAAAT
* * *
61037546 GGTAATTTTACCCCACA-AGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
* *
61037572 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
61037599 AGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61037626 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61037653 GGTAATTCTATCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61037680 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61037707 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
61037734 CGTAATTTTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61037761 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
61037788 GGTAATTCTACCCTATAAGGGTATTTA
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61037815 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61037842 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61037869 GATAATTCTACCCTATA--GG------
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61037888 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61037915 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61037942 GGTAATTCTACCCTACAAGGGTATTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61037969 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61037996 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61038023 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61038050 GGTTATTCTACCCTACAGGGGTAATTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
61038077 GATAATTCTAACCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61038104 GGTAATTCTACCCTATAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61038131 GGTAATTCTACCCTATAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61038158 GGTAATTCTACCTTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
61038184 TAGTAATTTT
Statistics
Matches: 536, Mismatches: 66, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.03
21 2 0.00
25 2 0.00
26 16 0.03
27 500 0.93
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:61037895 original size:19 final size:19
Alignment explanation
Indices: 61037871--61037910 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
61037861 GGTATTGCGA
61037871 TAATTCTACCCTATAGGGG
1 TAATTCTACCCTATAGGGG
61037890 TAATTCTACCCTATAGGGG
1 TAATTCTACCCTATAGGGG
61037909 TA
1 TA
61037911 TTTCGATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (19 bp):
TAATTCTACCCTATAGGGG
Found at i:61038237 original size:27 final size:26
Alignment explanation
Indices: 61038172--61038359 Score: 108
Period size: 27 Copynumber: 7.0 Consensus size: 26
61038162 ATTCTACCTT
* **
61038172 ACAGGGGTATTTTAGTAATTTTGTAA
1 ACAGGGGTATTTTGGTAATTTTACAA
* * *
61038198 GCCAAGGGCATTTTGGTAATTTTACAA
1 -ACAGGGGTATTTTGGTAATTTTACAA
**
61038225 ACAAGGGGTATTTTGGTAATTTTATTGA
1 AC-AGGGGTATTTTGGTAATTTTA-CAA
* ** *
61038253 TC-GAGGGTATTTCAGTAATTTTGCAA
1 ACAG-GGGTATTTTGGTAATTTTACAA
* * *
61038279 ACTGAGGGTATTTCGGTAATTTCACAA
1 ACAG-GGGTATTTTGGTAATTTTACAA
** * * *
61038306 ATTGAGGATATTTGGGTAATTTTATAA
1 ACAG-GGGTATTTTGGTAATTTTACAA
* *
61038333 ATCGGGGGTACTTTGGTAATTTTACAA
1 A-CAGGGGTATTTTGGTAATTTTACAA
61038360 CTGGGGGTAT
Statistics
Matches: 124, Mismatches: 32, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
26 4 0.03
27 117 0.94
28 3 0.02
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (26 bp):
ACAGGGGTATTTTGGTAATTTTACAA
Found at i:61038261 original size:81 final size:81
Alignment explanation
Indices: 61038176--61038355 Score: 191
Period size: 81 Copynumber: 2.2 Consensus size: 81
61038166 TACCTTACAG
* * * * * *
61038176 GGGTATTTTAGTAATTTTGTAAGCCAAGGGCATTTTGGTAATTTTACAAACAAG-GGGTATTTTG
1 GGGTATTTTAGTAATTTTGCAAACCAAGGGCATTTCGGTAATTTCACAAA-AAGAGGATATTTGG
**
61038240 GTAATTTTATTGATCGA
65 GTAATTTTATAAATCGA
* ** * **
61038257 GGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTCACAAATTGAGGATATTTGGG
1 GGGTATTTTAGTAATTTTGCAAACCAAGGGCATTTCGGTAATTTCACAAAAAGAGGATATTTGGG
*
61038322 TAATTTTATAAATCGG
66 TAATTTTATAAATCGA
* *
61038338 GGGTACTTTGGTAATTTT
1 GGGTATTTTAGTAATTTT
61038356 ACAACTGGGG
Statistics
Matches: 80, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 1 0.01
81 79 0.99
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.41
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTTGCAAACCAAGGGCATTTCGGTAATTTCACAAAAAGAGGATATTTGGG
TAATTTTATAAATCGA
Found at i:61038377 original size:26 final size:27
Alignment explanation
Indices: 61038202--61038380 Score: 134
Period size: 27 Copynumber: 6.7 Consensus size: 27
61038192 TTGTAAGCCA
* * *
61038202 AGGGCATTTTGGTAATTTTACAAAC-A
1 AGGGTATTTCGGTAATTTTACAAACTG
* ***
61038228 AGGGGTATTTTGGTAATTTTATTGA-TCG
1 A-GGGTATTTCGGTAATTTTACAAACT-G
* *
61038256 AGGGTATTTCAGTAATTTTGCAAACTG
1 AGGGTATTTCGGTAATTTTACAAACTG
* *
61038283 AGGGTATTTCGGTAATTTCACAAATTG
1 AGGGTATTTCGGTAATTTTACAAACTG
* * *
61038310 AGGATATTTGGGTAATTTTATAAA-TCG
1 AGGGTATTTCGGTAATTTTACAAACT-G
*
61038337 GGGGTACTTT-GGTAATTTTAC-AACTG
1 AGGGTA-TTTCGGTAATTTTACAAACTG
* *
61038363 GGGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
61038381 CATAATTGAG
Statistics
Matches: 122, Mismatches: 23, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
25 3 0.02
26 18 0.15
27 96 0.79
28 5 0.04
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAACTG
Found at i:61038567 original size:27 final size:27
Alignment explanation
Indices: 61038388--61038556 Score: 232
Period size: 27 Copynumber: 6.3 Consensus size: 27
61038378 TTTCATAATT
*
61038388 GAGGGTAAAATGGTAATTTTGTAAA-C
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
61038414 TGAGGATAAAATGGTAATTTTGTAAATC
1 -GAGGGTAAAATGGTAATTCTGTAAATC
** *
61038442 GAGGGTAAAACAGTAACTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
61038469 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
61038496 GAGGGTAAAATGGTAATTTTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
61038523 GAGGGTGAAACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
61038550 GAGGGTA
1 GAGGGTA
61038557 CTTTGGTAAT
Statistics
Matches: 125, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
27 124 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTGTAAATC
Found at i:61038567 original size:81 final size:81
Alignment explanation
Indices: 61038388--61038556 Score: 268
Period size: 81 Copynumber: 2.1 Consensus size: 81
61038378 TTTCATAATT
* *
61038388 GAGGGTAAAATGGTAATTTTGTAAACTGAGGATAAAATGGTAATTTTGTAAATCGAGGGTAAAAC
1 GAGGGTAAAATGGTAATTCTATAAACTGAGGATAAAATGGTAATTTTGTAAATCGAGGGTAAAAC
61038453 AGTAACTCTGTAAATC
66 AGTAACTCTGTAAATC
* *
61038469 GAGGGTAAAATGGTAATTCTATAAA-TCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTGAAA
1 GAGGGTAAAATGGTAATTCTATAAACT-GAGGATAAAATGGTAATTTTGTAAATCGAGGGTAAAA
* *
61038533 CGGTAATTCTGTAAATC
65 CAGTAACTCTGTAAATC
61038550 GAGGGTA
1 GAGGGTA
61038557 CTTTGGTAAT
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
80 1 0.01
81 80 0.99
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (81 bp):
GAGGGTAAAATGGTAATTCTATAAACTGAGGATAAAATGGTAATTTTGTAAATCGAGGGTAAAAC
AGTAACTCTGTAAATC
Found at i:61038593 original size:81 final size:81
Alignment explanation
Indices: 61038388--61038601 Score: 223
Period size: 81 Copynumber: 2.6 Consensus size: 81
61038378 TTTCATAATT
* ** * *
61038388 GAGGGTAAAATGGTAATTTTGTAAA-CTGAGGATAAAATGGTAATTTTGTAAATCGAGGGTAAAA
1 GAGGGTAAAATGGTAATTCTACAAATC-GAGGACAAAATAGTAATTTTGTAAATCGAGGGTAAAA
61038452 CAGTAACTCTGTAAATC
65 CAGTAACTCTGTAAATC
* ** * *
61038469 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTGAAAC
1 GAGGGTAAAATGGTAATTCTACAAATCGAGGACAAAATAGTAATTTTGTAAATCGAGGGTAAAAC
* *
61038534 GGTAATTCTGTAAATC
66 AGTAACTCTGTAAATC
*** * * *** *
61038550 GAGGGTACTTTGGTAATTTTACAAATTGAGGACATTTTAGTAATTTGGTAAA
1 GAGGGTAAAATGGTAATTCTACAAATCGAGGACAAAATAGTAATTTTGTAAA
61038602 CTAAAGTATT
Statistics
Matches: 113, Mismatches: 19, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
81 112 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (81 bp):
GAGGGTAAAATGGTAATTCTACAAATCGAGGACAAAATAGTAATTTTGTAAATCGAGGGTAAAAC
AGTAACTCTGTAAATC
Found at i:61040223 original size:26 final size:26
Alignment explanation
Indices: 61040194--61040245 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
61040184 ACTTTTATTA
*
61040194 AGGGACT-TTTTATGAAAATGTGAAAT
1 AGGGACTAATTTATG-AAATGTGAAAT
*
61040220 AGGGACTAATTTGTGAAATGTGAAAT
1 AGGGACTAATTTATGAAATGTGAAAT
61040246 TTATGAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.38, C:0.04, G:0.25, T:0.33
Consensus pattern (26 bp):
AGGGACTAATTTATGAAATGTGAAAT
Found at i:61040620 original size:148 final size:148
Alignment explanation
Indices: 61040407--61040703 Score: 576
Period size: 148 Copynumber: 2.0 Consensus size: 148
61040397 TGCCATAATA
61040407 TGAGTTTTGGATCAAATTGAATAATGTGACTAATAAATAGGCTAAATGTGATATTATAGATCAAA
1 TGAGTTTTGGATCAAATTGAATAATGTGACTAATAAATAGGCTAAATGTGATATTATAGATCAAA
* *
61040472 GAAAACAAGATTCAGGCCTAGAATGGGAGAAAACGTAAAATTGACGGTTAGGTCCCTTTTTTCCA
66 GAAAACAAGATTCAGGCCTAGAACGGGAGAAAACGTAAAATTGACGATTAGGTCCCTTTTTTCCA
61040537 TTTTAGTATCGAGGTAAG
131 TTTTAGTATCGAGGTAAG
61040555 TGAGTTTTGGATCAAATTGAATAATGTGACTAATAAATAGGCTAAATGTGATATTATAGATCAAA
1 TGAGTTTTGGATCAAATTGAATAATGTGACTAATAAATAGGCTAAATGTGATATTATAGATCAAA
61040620 GAAAACAAGATTCAGGCCTAGAACGGGAGAAAACGTAAAATTGACGATTAGGTCCCTTTTTTCCA
66 GAAAACAAGATTCAGGCCTAGAACGGGAGAAAACGTAAAATTGACGATTAGGTCCCTTTTTTCCA
61040685 TTTTAGTATCGAGGTAAG
131 TTTTAGTATCGAGGTAAG
61040703 T
1 T
61040704 TCATGTTGTG
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
148 147 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.30
Consensus pattern (148 bp):
TGAGTTTTGGATCAAATTGAATAATGTGACTAATAAATAGGCTAAATGTGATATTATAGATCAAA
GAAAACAAGATTCAGGCCTAGAACGGGAGAAAACGTAAAATTGACGATTAGGTCCCTTTTTTCCA
TTTTAGTATCGAGGTAAG
Found at i:61044376 original size:42 final size:42
Alignment explanation
Indices: 61044268--61044377 Score: 107
Period size: 42 Copynumber: 2.6 Consensus size: 42
61044258 CGAGATTCTG
* * *
61044268 TATATGACCATATCTGGGATATGGCATCAGTATGTGATTTCG
1 TATAAGACCATATCTGGGATATGGCACCAGTATGTGATTTCA
* * * *
61044310 TATAAGACCATGTCAGGGACATGGCGCC-GATATGAT-ATTTCA
1 TATAAGACCATATCTGGGATATGGCACCAG-TATG-TGATTTCA
* *
61044352 TGTAAGACCATATCTGGGGTATGGCA
1 TATAAGACCATATCTGGGATATGGCA
61044378 TTAATACGGT
Statistics
Matches: 53, Mismatches: 13, Indels: 4
0.76 0.19 0.06
Matches are distributed among these distances:
41 1 0.02
42 51 0.96
43 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
TATAAGACCATATCTGGGATATGGCACCAGTATGTGATTTCA
Found at i:61053445 original size:54 final size:54
Alignment explanation
Indices: 61053255--61053462 Score: 222
Period size: 54 Copynumber: 3.9 Consensus size: 54
61053245 TTTCCTTTTT
* * * * * *
61053255 GAACTTACCATTGCCATGTCTTGACATGGCCTTACGTGGTATCCTTGCTTTAT-
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * * * *
61053308 GAACTCACCAATGCCATGCCTTGGCATGGTCTTATAGGAGA-CCTTTGTCTTATA
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* * * *
61053362 GTAACTTATCAATTCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* *
61053417 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
61053463 ATCTGAACAA
Statistics
Matches: 125, Mismatches: 26, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
52 2 0.02
53 38 0.30
54 42 0.34
55 41 0.33
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:61053557 original size:47 final size:47
Alignment explanation
Indices: 61053441--61053577 Score: 184
Period size: 47 Copynumber: 2.9 Consensus size: 47
61053431 CATGCCTTGG
* * * *
61053441 CATGGTCTTACATGATATCCTTATCTGAACAAATGCCATGTTCAAAA
1 CATGGTCTTACATGGTATCCTTGTCTTAACAAATGCCATATTCAAAA
* *
61053488 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATATTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTAACAAATGCCATATTCAAAA
* *
61053535 CATGGTCGTACATGGTATCCTTGTCTTAGTACCAATGCCATAT
1 CATGGTCTTACATGGTATCCTTGTCTTA--ACAAATGCCATAT
61053578 CTTGATGTGG
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 68 0.86
49 11 0.14
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTAACAAATGCCATATTCAAAA
Found at i:61068214 original size:45 final size:45
Alignment explanation
Indices: 61068150--61068282 Score: 203
Period size: 45 Copynumber: 3.0 Consensus size: 45
61068140 CAGGATTCTA
*
61068150 ATATGTGTTTTCGTGTAAGACCATGTCTGGGAGGTTGGCATTGAT
1 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATTGAT
*
61068195 ATATGTGTTTTTGTGTAAGACCATGTCTGGGACGTTGGCATTGAT
1 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATTGAT
* * * * *
61068240 CTATGTGGTTACGTGTAAGACCATGTCTGGAACATTGGCATTG
1 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATTG
61068283 TATTTGATTC
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 80 1.00
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.37
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATTGAT
Found at i:61077387 original size:40 final size:40
Alignment explanation
Indices: 61077327--61077549 Score: 365
Period size: 40 Copynumber: 5.6 Consensus size: 40
61077317 CAAGCTCAAT
* * * * *
61077327 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
*
61077367 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
61077407 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
* **
61077447 TGCCTTCGGGTCTTAGCCCGTATATATCAACTCACACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
61077487 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
61077527 TGCCTTCGGGTCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
61077550 GTATTCAAAT
Statistics
Matches: 170, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
Found at i:61083215 original size:37 final size:37
Alignment explanation
Indices: 61083165--61083316 Score: 250
Period size: 37 Copynumber: 4.1 Consensus size: 37
61083155 ACCTTTAGCT
* * * *
61083165 CGGACGTAATCTCCACACGAAGTTATTGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
*
61083202 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
61083239 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
*
61083276 CGGACATAATCTCCACACGTAGTCATCGGGTCTCACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
61083313 CGGA
1 CGGA
61083317 ATATATTTCC
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 108 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:61083531 original size:47 final size:47
Alignment explanation
Indices: 61083479--61083689 Score: 280
Period size: 47 Copynumber: 4.5 Consensus size: 47
61083469 TTTCACACTA
* * ** * *
61083479 GCCATTCGGCTTTA-CTGCATATATGCATTTTCATATTCAGCACATTG
1 GCCATTCGGCCTTATC-ACATATATGCATGCTCACATTCATCACATTG
*
61083526 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
61083573 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
61083620 GCCATTCGGCCTAATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
61083667 GCCATTCGGCCTTACCACATATA
1 GCCATTCGGCCTTATCACATATA
61083690 CATATCTCAT
Statistics
Matches: 145, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
47 144 0.99
48 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:61083730 original size:48 final size:48
Alignment explanation
Indices: 61083660--61084083 Score: 505
Period size: 48 Copynumber: 8.5 Consensus size: 48
61083650 TCATATTCAC
* * * *
61083660 CACATTGGCCATTCGGCCTTACCACATATACATATCTCATATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
* *
61083708 CACACTAACCATTCGGCTTTACCACATATACATATCACACATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
61083756 CACATTAGCCATTCGGCTTTACCACATATACATATC-CACATATACATATCT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT--AT-T-T
*
61083807 CATACATATTTCA-CATTCGCCATTCGGCTTCACCACATATACATATCACACATATATTT
1 C--AC--A-TT-AGC------CATTCGGCTTTACCACATATACATATCACACATATATTT
* * *
61083866 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
* *
61083914 TACATTCA-CCATTCGGCTTTACCACATATACATATAACACATATATTT
1 CACATT-AGCCATTCGGCTTTACCACATATACATATCACACATATATTT
* * *
61083962 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
*
61084010 CACATTCGCCATTCGG-TTTCACCACATATACATATCACACATATATTT
1 CACATTAGCCATTCGGCTTT-ACCACATATACATATCACACATATATTT
*
61084058 CACATTAGCCATTCGGCTTCACCACA
1 CACATTAGCCATTCGGCTTTACCACA
61084084 CATATGTATA
Statistics
Matches: 325, Mismatches: 29, Indels: 44
0.82 0.07 0.11
Matches are distributed among these distances:
47 11 0.03
48 254 0.78
49 5 0.02
50 1 0.00
51 2 0.01
53 3 0.01
54 3 0.01
55 2 0.01
56 3 0.01
57 3 0.01
59 2 0.01
60 1 0.00
61 2 0.01
62 26 0.08
63 7 0.02
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (48 bp):
CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTT
Found at i:61083778 original size:96 final size:96
Alignment explanation
Indices: 61083660--61084083 Score: 589
Period size: 96 Copynumber: 4.3 Consensus size: 96
61083650 TCATATTCAC
* * * *
61083660 CACATTGGCCATTCGGCCTTACCACATATACATATCTCATATATATTTCACACTAACCATTCGGC
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTCACCATTCGGC
61083725 TTTACCACATATACATATCACACATATATTT
66 TTTACCACATATACATATCACACATATATTT
61083756 CACATTAGCCATTCGGCTTTACCACATATACATATCCACATATACATATCTCATACATATTTCAC
1 CACATTAGCCATTCGG--------C-T-T---TA-CCACATATACATATCTCATACATATTTCAC
* * *
61083821 ATTCGCCATTCGGCTTCACCACATATACATATCACACATATATTT
52 ACTCACCATTCGGCTTTACCACATATACATATCACACATATATTT
* *
61083866 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTTACATTCACCATTCGGC
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTCACCATTCGGC
*
61083931 TTTACCACATATACATATAACACATATATTT
66 TTTACCACATATACATATCACACATATATTT
* *
61083962 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCGG-
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTCACCATTCGGC
61084026 TTTCACCACATATACATATCACACATATATTT
66 TTT-ACCACATATACATATCACACATATATTT
*
61084058 CACATTAGCCATTCGGCTTCACCACA
1 CACATTAGCCATTCGGCTTTACCACA
61084084 CATATGTATA
Statistics
Matches: 298, Mismatches: 15, Indels: 30
0.87 0.04 0.09
Matches are distributed among these distances:
95 3 0.01
96 200 0.67
97 2 0.01
100 1 0.00
101 1 0.00
102 1 0.00
104 1 0.00
106 1 0.00
109 2 0.01
110 86 0.29
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (96 bp):
CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTCACCATTCGGC
TTTACCACATATACATATCACACATATATTT
Found at i:61083796 original size:14 final size:14
Alignment explanation
Indices: 61083777--61083805 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
61083767 TTCGGCTTTA
61083777 CCACATATACATAT
1 CCACATATACATAT
61083791 CCACATATACATAT
1 CCACATATACATAT
61083805 C
1 C
61083806 TCATACATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.31, G:0.00, T:0.28
Consensus pattern (14 bp):
CCACATATACATAT
Found at i:61083802 original size:62 final size:62
Alignment explanation
Indices: 61083729--61083862 Score: 214
Period size: 62 Copynumber: 2.1 Consensus size: 62
61083719 TTCGGCTTTA
* *
61083729 CCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCACCACATATACATAT
* * *
61083791 CCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTCACCACATATACATAT
1 CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCACCACATATACATAT
61083853 CACACATATA
1 C-CACATATA
61083863 TTTCACATTA
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
62 58 0.88
63 8 0.12
ACGTcount: A:0.35, C:0.29, G:0.04, T:0.31
Consensus pattern (62 bp):
CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCACCACATATACATAT
Found at i:61083891 original size:206 final size:192
Alignment explanation
Indices: 61083660--61084083 Score: 641
Period size: 206 Copynumber: 2.1 Consensus size: 192
61083650 TCATATTCAC
* * *
61083660 CACATTGGCCATTCGGCCTTACCACATATACATATCTCATATATATTTCACACTAACCATTCGGC
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAACCATTCGGC
*
61083725 TTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
66 TTTACCACATATACATATAACACATATATTTCACATTAGCCATTCGG--------C-T-T---TA
61083790 TCCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTCACCACATATACATATCA
118 -CCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTCACCACATATACATATCA
61083855 CACATATATTT
182 CACATATATTT
* * *
61083866 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTTACATTCACCATTCGGC
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAACCATTCGGC
61083931 TTTACCACATATACATATAACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
66 TTTACCACATATACATATAACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
61083996 TCTCATACATATTTCACATTCGCCATTCGGTTTCACCACATATACATATCACACATATATTT
131 TCTCATACATATTTCACATTCGCCATTCGGCTTCACCACATATACATATCACACATATATTT
*
61084058 CACATTAGCCATTCGGCTTCACCACA
1 CACATTAGCCATTCGGCTTTACCACA
61084084 CATATGTATA
Statistics
Matches: 209, Mismatches: 9, Indels: 14
0.90 0.04 0.06
Matches are distributed among these distances:
192 99 0.47
193 2 0.01
196 1 0.00
197 1 0.00
198 1 0.00
206 105 0.50
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (192 bp):
CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAACCATTCGGC
TTTACCACATATACATATAACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
TCTCATACATATTTCACATTCGCCATTCGGCTTCACCACATATACATATCACACATATATTT
Found at i:61093117 original size:26 final size:26
Alignment explanation
Indices: 61093088--61093142 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
61093078 CATCCTTGCA
61093088 ATTACTTAAACTAAACCTATAGGATT
1 ATTACTTAAACTAAACCTATAGGATT
61093114 ATTACTTAAACTAAACCTATAGGATT
1 ATTACTTAAACTAAACCTATAGGATT
61093140 ATT
1 ATT
61093143 GAAGATCCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (26 bp):
ATTACTTAAACTAAACCTATAGGATT
Found at i:61108502 original size:18 final size:18
Alignment explanation
Indices: 61108476--61108517 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
61108466 AAAAGTCGTG
61108476 GCCCATGTGGGCCCACAT-
1 GCCCATGT-GGCCCACATA
*
61108494 GCCCGTGTGGCCCACATA
1 GCCCATGTGGCCCACATA
61108512 GCCCAT
1 GCCCAT
61108518 ACTGGCCTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.17, C:0.40, G:0.26, T:0.17
Consensus pattern (18 bp):
GCCCATGTGGCCCACATA
Found at i:61115433 original size:45 final size:45
Alignment explanation
Indices: 61115383--61115469 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
61115373 CCAAAACATG
* *
61115383 TGTCACATATATCACGAACTCAGACCATAACTCAATGAGTTCGGA
1 TGTCACATATATCACGAACTCAAACCACAACTCAATGAGTTCGGA
*
61115428 TGTCACATATATCATGAACTCAAACCACAACTCAATGAGTTC
1 TGTCACATATATCACGAACTCAAACCACAACTCAATGAGTTC
61115470 AAATTACATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAAACCACAACTCAATGAGTTCGGA
Found at i:61122248 original size:49 final size:49
Alignment explanation
Indices: 61122069--61122253 Score: 140
Period size: 49 Copynumber: 3.9 Consensus size: 49
61122059 TATGTGAGCT
* * * *
61122069 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGGGATA-TTCA-AG-C
1 AGTGTAAGACCTGTCTAGGACATGGCATCAGCCTC--GATAGATGAGAGTC
* * * * *
61122116 TAGTGTAAGACCTATCTAGGACATGGCGTCAG-CT---T-GTTGTGTGTC
1 -AGTGTAAGACCTGTCTAGGACATGGCATCAGCCTCGATAGATGAGAGTC
*
61122161 AGTGTAAGACTTGTCTAGGACATGGCATC-GACAC-CGATAGATGAGAGTC
1 AGTGTAAGACCTGTCTAGGACATGGCATCAG-C-CTCGATAGATGAGAGTC
* *
61122210 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGA
1 AGTGTAAGACCTGTCTAGGACATGGCATCAGCCTCGATAGATGA
61122254 AAGTACTGTA
Statistics
Matches: 108, Mismatches: 16, Indels: 25
0.72 0.11 0.17
Matches are distributed among these distances:
43 4 0.04
44 27 0.25
45 1 0.01
46 1 0.01
48 24 0.22
49 50 0.46
50 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCAGCCTCGATAGATGAGAGTC
Found at i:61123127 original size:37 final size:37
Alignment explanation
Indices: 61123072--61123179 Score: 155
Period size: 37 Copynumber: 2.9 Consensus size: 37
61123062 AGCTCAGACG
* * *
61123072 AAATCTCTACACGAAGTCATCGGGTCTTACCCTGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
61123109 AAATCTCCACACGTAGTCATCGGGTCTTAACCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
61123146 TAATCTCCACACGTAGTCATC-GGTCTTACTCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
61123180 ATATATTTCC
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
36 11 0.17
37 53 0.83
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Done.