Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 186 of 352
Found at i:61123470 original size:47 final size:47
Alignment explanation
Indices: 61123419--61123683 Score: 379
Period size: 47 Copynumber: 5.6 Consensus size: 47
61123409 TCGGCTTCGC
* *
61123419 CACATATATACACT-TTCACGTTCATCACATTGGCCATTCTGCCTTAT
1 CACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTAT
*
61123466 CACATATATACATGGTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* *
61123513 CACAGATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* * * *
61123560 CACACATATGCATGCTCACATTCATCACATTGGCCATTTGGCCTTAT
1 CACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* * *
61123607 CACATATATGCATGTTCATATTCATCACATTGGTCATTCGGCCTTAT
1 CACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* **
61123654 CACACATATACACATTCACATTCATCACAT
1 CACATATATACATGTTCACATTCATCACAT
61123684 AAAATCCTAA
Statistics
Matches: 198, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 1 0.01
47 197 0.99
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (47 bp):
CACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
Found at i:61123563 original size:22 final size:22
Alignment explanation
Indices: 61123489--61123563 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
61123479 GGTCACATTC
61123489 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
61123511 ATCACAGATAT-G-CATGTTC-ACATT
1 ATCAC--AT-TGGCCA--TTCGGCCTT
61123535 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
61123558 ATCACA
1 ATCACA
61123564 CATATGCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:61126035 original size:14 final size:14
Alignment explanation
Indices: 61126016--61126061 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
61126006 TTTGCATTAA
61126016 TTTATTACTAACCT
1 TTTATTACTAACCT
*
61126030 TTTATT-TTATA-C-
1 TTTATTACTA-ACCT
61126042 TTTATTACTAACCT
1 TTTATTACTAACCT
61126056 TTTATT
1 TTTATT
61126062 TTATTCTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
12 7 0.27
13 6 0.23
14 13 0.50
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTATTACTAACCT
Found at i:61126046 original size:26 final size:26
Alignment explanation
Indices: 61126016--61126070 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
61126006 TTTGCATTAA
61126016 TTTATTACTAACCTTTTATTTTATAC
1 TTTATTACTAACCTTTTATTTTATAC
*
61126042 TTTATTACTAACCTTTTATTTTATTC
1 TTTATTACTAACCTTTTATTTTATAC
61126068 TTT
1 TTT
61126071 CTCCCATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTATTACTAACCTTTTATTTTATAC
Found at i:61127056 original size:19 final size:20
Alignment explanation
Indices: 61127010--61127062 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
61127000 AATGGCTAAT
*
61127010 ATGAAAGTTGTTTTATGAATG
1 ATGAAAGTT-TTTCATGAATG
*
61127031 CAAGAAAGTTTTTCATGAATG
1 -ATGAAAGTTTTTCATGAATG
*
61127052 -TGAAAATTTTT
1 ATGAAAGTTTTT
61127063 GGCACGGTCG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 9 0.33
21 10 0.37
22 8 0.30
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.42
Consensus pattern (20 bp):
ATGAAAGTTTTTCATGAATG
Found at i:61137950 original size:76 final size:76
Alignment explanation
Indices: 61137870--61138028 Score: 203
Period size: 76 Copynumber: 2.1 Consensus size: 76
61137860 TCCTGATAAC
* * ** *
61137870 GATGGTTTATCGAATCAAATCTTTCATCTTGGGTTGCCCGAAAATGAT-AGCCTATGACCTCGAA
1 GATGGTTTATCGAATCAAATATGTCATCCCGGGTTGCCCGAAAATGATGA-CCTATGACCTCAAA
* *
61137934 TTGCTTGACAAT
65 TTACTAGACAAT
* **
61137946 GATGGTTTATTGAATCAAATATGTCATCCCGGGTTGCCCGGCAATGATGACCTATGACCTCAAAT
1 GATGGTTTATCGAATCAAATATGTCATCCCGGGTTGCCCGAAAATGATGACCTATGACCTCAAAT
*
61138011 TACTAGGCAAT
66 TACTAGACAAT
61138022 GATGGTT
1 GATGGTT
61138029 CGCAAAATAA
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
76 70 0.99
77 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (76 bp):
GATGGTTTATCGAATCAAATATGTCATCCCGGGTTGCCCGAAAATGATGACCTATGACCTCAAAT
TACTAGACAAT
Found at i:61142964 original size:15 final size:15
Alignment explanation
Indices: 61142944--61142978 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
61142934 TTGAAGGTTA
61142944 AAAAAAACACTTTTC
1 AAAAAAACACTTTTC
* *
61142959 AAAAAACCATTTTTC
1 AAAAAAACACTTTTC
61142974 AAAAA
1 AAAAA
61142979 TAAACTAGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAAAAACACTTTTC
Found at i:61150384 original size:40 final size:40
Alignment explanation
Indices: 61150340--61150607 Score: 459
Period size: 40 Copynumber: 6.7 Consensus size: 40
61150330 GCTACTTGCT
61150340 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
61150380 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
61150420 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
61150460 CAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
61150500 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
61150540 CAAATGCCTTCAGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
61150579 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
61150608 CATCCGAATA
Statistics
Matches: 216, Mismatches: 9, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
38 1 0.00
39 33 0.15
40 181 0.84
41 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:61153597 original size:46 final size:46
Alignment explanation
Indices: 61153490--61153599 Score: 166
Period size: 46 Copynumber: 2.4 Consensus size: 46
61153480 GCAAACTCGA
* * **
61153490 ACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGG
1 ACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCAG
*
61153536 ACTCAACTCAACGAGTTCGGGCATTTGCATCCATAAGTGAACTCAG
1 ACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCAG
*
61153582 ACTCAAGTCAACGAGTTC
1 ACTCAACTCAACGAGTTC
61153600 AGATGCCCAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 58 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
ACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCAG
Found at i:61162611 original size:24 final size:24
Alignment explanation
Indices: 61162579--61162628 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
61162569 ATTATTTAAT
61162579 AATATCAAATAATCAAAGATTCTC
1 AATATCAAATAATCAAAGATTCTC
*
61162603 AATATCAAATAATCAACGATTCTC
1 AATATCAAATAATCAAAGATTCTC
61162627 AA
1 AA
61162629 CATAACCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.18, G:0.04, T:0.28
Consensus pattern (24 bp):
AATATCAAATAATCAAAGATTCTC
Found at i:61165443 original size:20 final size:21
Alignment explanation
Indices: 61165417--61165463 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
61165407 CTTATTTTTA
*
61165417 ATTTATTCCTTTATTCCTATT
1 ATTTATTCCTTTATTCATATT
**
61165438 -TTTATTTTTTTATTCATATT
1 ATTTATTCCTTTATTCATATT
61165458 ATTTAT
1 ATTTAT
61165464 GATATTATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (21 bp):
ATTTATTCCTTTATTCATATT
Found at i:61166576 original size:8 final size:8
Alignment explanation
Indices: 61166563--61166587 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
61166553 CTCGAGAATG
61166563 CAACATAT
1 CAACATAT
61166571 CAACATAT
1 CAACATAT
61166579 CAACATAT
1 CAACATAT
61166587 C
1 C
61166588 TTTGAGTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (8 bp):
CAACATAT
Found at i:61171873 original size:24 final size:24
Alignment explanation
Indices: 61171840--61171951 Score: 89
Period size: 24 Copynumber: 4.6 Consensus size: 24
61171830 TCTTTCTTAT
* **
61171840 TCGCATACATAGTGCCACATTTTC
1 TCGCACACATAGTGCCACATAATC
**
61171864 TCGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCACATAATC
* * * *
61171888 TCTCACACATAGTGCCACTTAGTTT
1 TCGCACACATAGTGCCACATA-ATC
* * * *
61171913 TTGTACACATAGTGCCGCATAACC
1 TCGCACACATAGTGCCACATAATC
*
61171937 TTGCACACATAGTGC
1 TCGCACACATAGTGC
61171952 TGAAATTTCT
Statistics
Matches: 68, Mismatches: 19, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
24 51 0.75
25 17 0.25
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (24 bp):
TCGCACACATAGTGCCACATAATC
Found at i:61173028 original size:20 final size:21
Alignment explanation
Indices: 61173003--61173041 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
61172993 TAATTTCTTC
*
61173003 TTTTATTCCTATT-TTTATTT
1 TTTTATTCATATTATTTATTT
61173023 TTTTATTCATATTATTTAT
1 TTTTATTCATATTATTTAT
61173042 GATATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATTCATATTATTTATTT
Found at i:61177755 original size:19 final size:18
Alignment explanation
Indices: 61177726--61177762 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
61177716 GTATATATTT
61177726 TAAATTTATTTAGGTAGA
1 TAAATTTATTTAGGTAGA
*
61177744 TAAATCTTATTTGGGTAGA
1 TAAAT-TTATTTAGGTAGA
61177763 AAAGTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.35, C:0.03, G:0.19, T:0.43
Consensus pattern (18 bp):
TAAATTTATTTAGGTAGA
Found at i:61177772 original size:19 final size:19
Alignment explanation
Indices: 61177726--61177773 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
61177716 GTATATATTT
61177726 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
61177744 TAAATCTTATTTGGGTAGA
1 TAAATTTTATTTAGGTAGA
61177763 -AAAGTTTTATT
1 TAAA-TTTTATT
61177774 CATATTTTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 7 0.28
19 18 0.72
ACGTcount: A:0.35, C:0.02, G:0.17, T:0.46
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:61177835 original size:43 final size:43
Alignment explanation
Indices: 61177787--61177879 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
61177777 ATTTTAGAAA
61177787 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
61177830 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
61177873 TATTTTC
1 TATTTTC
61177880 CTAATTAGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:61182491 original size:19 final size:19
Alignment explanation
Indices: 61182445--61182492 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
61182435 GTATATATTT
61182445 TAAA-TTTATTTAAGTAGA
1 TAAATTTTATTTAAGTAGA
* *
61182463 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAAGTAGA
*
61182482 TAAGTTTTATT
1 TAAATTTTATT
61182493 CATATTTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAAGTAGA
Found at i:61182554 original size:43 final size:43
Alignment explanation
Indices: 61182506--61182598 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
61182496 ATTTTAGAAA
61182506 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
61182549 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
61182592 TATTTTC
1 TATTTTC
61182599 CTAATTAGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:61184662 original size:3 final size:3
Alignment explanation
Indices: 61184654--61184739 Score: 113
Period size: 3 Copynumber: 28.7 Consensus size: 3
61184644 AGTGGATCAT
*
61184654 ATG ATG ATG ATG ATG ATTG -TG ATG GTG ATG ATG ATTG -TG ATG ATG
1 ATG ATG ATG ATG ATG A-TG ATG ATG ATG ATG ATG A-TG ATG ATG ATG
* *
61184699 ATG ATG ATG ATG ATG AGG ATG AGG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
61184740 ACCAATAATG
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
2 4 0.05
3 65 0.89
4 4 0.05
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:61195225 original size:40 final size:40
Alignment explanation
Indices: 61195170--61195373 Score: 304
Period size: 40 Copynumber: 5.1 Consensus size: 40
61195160 TGGATGATAA
* * *
61195170 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
61195210 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
61195250 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
61195290 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
61195330 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
61195370 CCGG
1 CCGG
61195374 TTAAATATTG
Statistics
Matches: 152, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 3 0.02
40 149 0.98
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:61201444 original size:19 final size:19
Alignment explanation
Indices: 61201420--61201460 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
61201410 TTATATCAAT
61201420 ATTCCTACCAATAATGTGA
1 ATTCCTACCAATAATGTGA
61201439 ATTCCTACCAATAATGTGA
1 ATTCCTACCAATAATGTGA
61201458 ATT
1 ATT
61201461 TTATTGAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (19 bp):
ATTCCTACCAATAATGTGA
Found at i:61203069 original size:15 final size:15
Alignment explanation
Indices: 61203049--61203078 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
61203039 AATTCCAACC
61203049 TAATGCATATGCAAT
1 TAATGCATATGCAAT
61203064 TAATGCATATGCAAT
1 TAATGCATATGCAAT
61203079 ATGTTACACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (15 bp):
TAATGCATATGCAAT
Found at i:61205946 original size:27 final size:27
Alignment explanation
Indices: 61205867--61205936 Score: 140
Period size: 27 Copynumber: 2.6 Consensus size: 27
61205857 CAGTTCACAA
61205867 AAACCAACTGGCGAACCTTAGCTCACC
1 AAACCAACTGGCGAACCTTAGCTCACC
61205894 AAACCAACTGGCGAACCTTAGCTCACC
1 AAACCAACTGGCGAACCTTAGCTCACC
61205921 AAACCAACTGGCGAAC
1 AAACCAACTGGCGAAC
61205937 TCCAGCTCAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.36, C:0.36, G:0.16, T:0.13
Consensus pattern (27 bp):
AAACCAACTGGCGAACCTTAGCTCACC
Found at i:61208663 original size:47 final size:47
Alignment explanation
Indices: 61208585--61208990 Score: 636
Period size: 47 Copynumber: 8.6 Consensus size: 47
61208575 CCCTTCGAGA
* * * * * *
61208585 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61208632 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61208679 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61208726 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61208775 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61208822 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61208871 CTT-TCACATATATATACACTTTCACATTCATCACATCGGCCATT-CGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61208918 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61208965 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
61208991 CACAATTATC
Statistics
Matches: 337, Mismatches: 16, Indels: 12
0.92 0.04 0.03
Matches are distributed among these distances:
46 35 0.10
47 168 0.50
48 45 0.13
49 89 0.26
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:61208782 original size:96 final size:94
Alignment explanation
Indices: 61208585--61208990 Score: 636
Period size: 96 Copynumber: 4.3 Consensus size: 94
61208575 CCCTTCGAGA
* * * * * * * *
61208585 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
61208650 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
61208679 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
61208744 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
61208775 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
61208840 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
61208871 CTT-TCACATATATATACACTTTCACATTCATCACATCGGCCATT-CGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
61208934 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
61208965 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
61208991 CACAATTATC
Statistics
Matches: 294, Mismatches: 13, Indels: 11
0.92 0.04 0.03
Matches are distributed among these distances:
93 16 0.05
94 88 0.30
95 8 0.03
96 147 0.50
97 35 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:61208920 original size:143 final size:144
Alignment explanation
Indices: 61208585--61208990 Score: 673
Period size: 143 Copynumber: 2.9 Consensus size: 144
61208575 CCCTTCGAGA
* * * * * *
61208585 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTC-GCCTTATCACATATATAC
*
61208648 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC--ATATATACACTTTCACATTCATCA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
61208711 CATCGGCCATTAGGC
130 CATCGGCCATTAGGC
*
61208726 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT-CGCCTTATCACATATATAC
61208791 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
61208856 CATCGGCCATTAGGC
130 CATCGGCCATTAGGC
61208871 CTT-TCACATATATATACACTTTCACATTCATCACATCGGCCATTCGCCTTATCACATATATACA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGCCTTATCACATATATACA
61208935 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA--TTCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
61208991 CACAATTATC
Statistics
Matches: 251, Mismatches: 9, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
141 17 0.07
142 1 0.00
143 150 0.60
144 41 0.16
145 42 0.17
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (144 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGC
Found at i:61211594 original size:39 final size:40
Alignment explanation
Indices: 61211493--61211716 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
61211483 TTGAATGATG
* * * * *
61211493 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
61211533 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61211573 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
61211612 TCCGGGTTAA-TCCCGATGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61211651 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
61211692 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61211717 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
39 69 0.43
40 81 0.51
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61211683 original size:79 final size:79
Alignment explanation
Indices: 61211546--61211716 Score: 247
Period size: 78 Copynumber: 2.2 Consensus size: 79
61211536 GGACTAAGAT
*
61211546 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA-
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAT
*
61211610 AATCCGGGTTA-ATC
66 AA-CCGGGCTATATC
* * * *
61211624 CCGATGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA
*
61211689 TAACCGGGCTATGTC
65 TAACCGGGCTATATC
61211704 CCGAAGGCATTTG
1 CCGAAGGCATTTG
61211717 AACGAGGAGC
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 34 0.41
79 32 0.39
80 16 0.20
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAT
AACCGGGCTATATC
Found at i:61211738 original size:79 final size:79
Alignment explanation
Indices: 61211546--61211749 Score: 211
Period size: 79 Copynumber: 2.6 Consensus size: 79
61211536 GGACTAAGAT
** * *
61211546 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACT
*
61211609 AAATCCGGGTTAATC
65 AAATCCGGGCTAATC
* ** * *
61211624 CCGATGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA
*
61211689 TAA-CCGGGCTATGTC
66 -AATCCGGGCTA-ATC
* * *
61211704 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
61211750 TACGTGATTT
Statistics
Matches: 108, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
77 1 0.01
78 33 0.31
79 47 0.44
80 27 0.25
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA
AATCCGGGCTAATC
Found at i:61212930 original size:15 final size:15
Alignment explanation
Indices: 61212910--61212938 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
61212900 CCGAAACTAG
61212910 AAAGAAAAAAAAAAC
1 AAAGAAAAAAAAAAC
61212925 AAAGAAAAAAAAAA
1 AAAGAAAAAAAAAA
61212939 TGCTCATCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.90, C:0.03, G:0.07, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAAAAAC
Found at i:61214042 original size:39 final size:39
Alignment explanation
Indices: 61213937--61214117 Score: 163
Period size: 40 Copynumber: 4.6 Consensus size: 39
61213927 TTGAATGCTG
* *
61213937 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTAAT
1 TCCGGGTTAAGTCCGAAGGCATTTGTGC-AAGTTACTAAT
** * * *
61213976 TCCGGACTAAGATCCGAAGGTATTTGTGCGAGTTTATTAAT
1 TCCGGGTTAAG-TCCGAAGGCATTTGTGCAAG-TTACTAAT
* *
61214017 TCC-GGTTAAGTCCGAAGGCCTTTGTGCAAGATACTAAT
1 TCCGGGTTAAGTCCGAAGGCATTTGTGCAAGTTACTAAT
* * * *
61214055 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCAAGTTACT-AAT
61214095 TCCGGGTTAAGTCCCGAA-GCATT
1 TCCGGGTTAAGT-CCGAAGGCATT
61214118 GAATGAGTTA
Statistics
Matches: 118, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 9 0.08
39 41 0.35
40 52 0.44
41 16 0.14
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (39 bp):
TCCGGGTTAAGTCCGAAGGCATTTGTGCAAGTTACTAAT
Found at i:61214072 original size:79 final size:79
Alignment explanation
Indices: 61213937--61214113 Score: 218
Period size: 79 Copynumber: 2.2 Consensus size: 79
61213927 TTGAATGCTG
* * *
61213937 TCCGGGCTAAGTCCGAAGGCTTTGTGCTAAGTGACTAATTCCGGACTAAGATCCGAAGGTATTTG
1 TCCGGGTTAAGTCCGAAGGCTTTGTGCTAAGTGACTAATTCCGGACTAAGATCCGAAGGCATTCG
* *
61214002 TGCGAGTTTATTAAT
66 TGCGAGTTT-TAAAA
**
61214017 TCC-GGTTAAGTCCGAAGGCCTTTGTGC-AAGAT-ACTAATTCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCGAAGG-CTTTGTGCTAAG-TGACTAATTCCGGACTAAGAT-CCGAAGGCAT
61214078 TCGTGCGAGTTTTAAAA
63 TCGTGCGAGTTTTAAAA
61214095 TCCGGGTTAAGTCCCGAAG
1 TCCGGGTTAAGT-CCGAAG
61214114 CATTGAATGA
Statistics
Matches: 85, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
78 7 0.08
79 60 0.71
80 18 0.21
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (79 bp):
TCCGGGTTAAGTCCGAAGGCTTTGTGCTAAGTGACTAATTCCGGACTAAGATCCGAAGGCATTCG
TGCGAGTTTTAAAA
Found at i:61251501 original size:37 final size:38
Alignment explanation
Indices: 61251422--61251666 Score: 199
Period size: 38 Copynumber: 6.5 Consensus size: 38
61251412 AAATCACGTA
* *
61251422 CCTTCGGGATTTAA-CCGGATATAGT-CCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGAT-TAGTAACTCG--CACAATG
* * *
61251460 CCTTCGGGACATAGCCCGG-TTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTAGTAACTCGCACAATG
* *
61251497 CCTTC-GGACTTAACCCGGATTTA-AAACTCGCACGATG
1 CCTTCGGGACTTAACCCGGA-TTAGTAACTCGCACAATG
*
61251534 CC-TCGGGACTTAACCCGGATTTAATAACTCGCACAA-G
1 CCTTCGGGACTTAACCCGGA-TTAGTAACTCGCACAATG
*
61251571 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAA-G
1 CCTTCGGGACTTAACCCGGA-TTAGTAACTCGCACAATG
* * * *
61251609 CCTTC-GGATCTT-ATCCGGATATA-TCACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGAT-TAGTAAC-TCGCACAATG
*
61251647 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
61251667 CAGCATTCAA
Statistics
Matches: 173, Mismatches: 20, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
36 18 0.10
37 65 0.38
38 78 0.45
39 12 0.07
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (38 bp):
CCTTCGGGACTTAACCCGGATTAGTAACTCGCACAATG
Found at i:61251562 original size:75 final size:74
Alignment explanation
Indices: 61251457--61251594 Score: 199
Period size: 75 Copynumber: 1.9 Consensus size: 74
61251447 CCTCGTTCAA
* *
61251457 ATGCCTTCGGGACATAGCCCGGTTAGTAACTCACACAATGCCTTC-GGACTTAACCCGGATTTAA
1 ATGCCTTCGGGACATAACCCGGTTAATAACTCACACAA-GCCTTCGGGACTTAACCCGGATTTAA
61251521 AACTCGCACG
65 AACTCGCACG
* *
61251531 ATGCC-TCGGGACTTAACCCGGATTTAATAACTCGCACAAGCCTTCGGGACTTAACCCGGATTTA
1 ATGCCTTCGGGACATAACCCGG--TTAATAACTCACACAAGCCTTCGGGACTTAACCCGGATTTA
61251595 GTATCTCGCA
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
73 14 0.25
74 11 0.19
75 32 0.56
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (74 bp):
ATGCCTTCGGGACATAACCCGGTTAATAACTCACACAAGCCTTCGGGACTTAACCCGGATTTAAA
ACTCGCACG
Found at i:61251578 original size:38 final size:38
Alignment explanation
Indices: 61251459--61251666 Score: 207
Period size: 38 Copynumber: 5.6 Consensus size: 38
61251449 TCGTTCAAAT
* * * *
61251459 GCCTTCGGGACATAGCCCGG--TTAGTAACTCACACAA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAA
*
61251495 TGCCTTC-GGACTTAACCCGGATTTAA-AACTCGCACGAT
1 -GCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC-AA
61251533 GCC-TCGGGACTTAACCCGGATTTAATAACTCGCACAA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAA
* *
61251570 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAA
* * * *
61251608 GCCTTC-GGATCTT-ATCCGGATAT-ATCACTTAGCACAAA
1 GCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC-AA
*
61251646 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
61251667 CAGCATTCAA
Statistics
Matches: 144, Mismatches: 16, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
36 15 0.10
37 56 0.39
38 65 0.45
39 8 0.06
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (38 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAA
Found at i:61251627 original size:75 final size:74
Alignment explanation
Indices: 61251483--61251666 Score: 196
Period size: 75 Copynumber: 2.4 Consensus size: 74
61251473 GCCCGGTTAG
* *
61251483 TAACTCACACAATGCCTTC-GGACTTAACCCGGATTTAAAACTCGCACGATGCCTCGGGACTTAA
1 TAACTCGCACAA-GCCTTCGGGACTTAACCCGGATTTAAAACTCGCACGAAGCCTCGGGACTTAA
*
61251547 CCCGGATTTAA
65 CCCGGATAT-A
* *
61251558 TAACTCGCACAAGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC-AAGCCTTC-GGATCTT
1 TAACTCGCACAAGCCTTCGGGACTTAACCCGGATTTA-AAACTCGCACGAAGCC-TCGGGA-CTT
*
61251621 -ATCCGGATATA
63 AACCCGGATATA
* * *
61251632 TCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TAAC-TCGCAC-AAGCCTTCGGGACTTAACCCGGA
61251667 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
74 10 0.11
75 49 0.52
76 35 0.37
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (74 bp):
TAACTCGCACAAGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACGAAGCCTCGGGACTTAAC
CCGGATATA
Found at i:61259474 original size:80 final size:79
Alignment explanation
Indices: 61259317--61259540 Score: 238
Period size: 79 Copynumber: 2.8 Consensus size: 79
61259307 GCTCCTCGTT
* * * * * *
61259317 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
61259382 TTTAACAACTCGCA
66 TTTAACAACTCGCA
* *
61259396 CGACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
** *
61259461 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
* * * * * *
61259476 CAAAGGCCTTC-GGATCTTAATCCGGA--TAATTCACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAA-TAAC-TCGCACAATGCCTTCGGGACTTAACCC
61259538 GGA
63 GGA
61259541 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
78 3 0.02
79 62 0.51
80 57 0.47
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAACTCGCA
Found at i:61259495 original size:40 final size:40
Alignment explanation
Indices: 61259319--61259540 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 40
61259309 TCCTCGTTCA
* * * * *
61259319 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
61259358 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
61259398 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
61259438 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
61259478 AAGGCCTTC-GGATCTTAATCCGGA--TAATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAA-TAAC-TCGCACG
* *
61259517 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
61259541 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.01
39 56 0.36
40 99 0.63
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:61262930 original size:13 final size:13
Alignment explanation
Indices: 61262909--61262940 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
61262899 ATATATATAT
*
61262909 GTACCGAAACAGA
1 GTACTGAAACAGA
61262922 GTACTGAAACAGA
1 GTACTGAAACAGA
61262935 GTACTG
1 GTACTG
61262941 CTCAGAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.19, G:0.25, T:0.16
Consensus pattern (13 bp):
GTACTGAAACAGA
Found at i:61266338 original size:49 final size:49
Alignment explanation
Indices: 61266168--61266339 Score: 167
Period size: 49 Copynumber: 3.5 Consensus size: 49
61266158 AGATGCCGAC
* * *
61266168 GCCATGTCCCAGACATGGTCTTATACTGGCTAGCACATC-A-A--AGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCT--CTCATCTATAGGCGTCGAT
* * * * * *
61266216 CCCATGTCCCAAACAGGTCTTACAATGACTTTCATATATTGAGGC--CGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTA-T-AGGCGTCGAT
*
61266265 GCCATGTCCCAGACAAGTCTTACACTGGCTCTCATCTATAGGCGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATAGGCGTCGAT
61266314 GCCATGTCCCAGACAGGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
61266340 AGCTTTTATA
Statistics
Matches: 99, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
45 3 0.03
46 1 0.01
47 16 0.16
48 14 0.14
49 65 0.66
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATAGGCGTCGAT
Found at i:61266429 original size:46 final size:46
Alignment explanation
Indices: 61266259--61266530 Score: 171
Period size: 46 Copynumber: 5.7 Consensus size: 46
61266249 ATATATTGAG
* * *
61266259 GCCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTC--ATCTATAG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTATC-A-AT
* * ** * *
61266306 GCGTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTTATATCTCGAG
1 GC--CGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTA--TCAAT
** * *
61266357 GATGATGCATGTCCTAGATATGTCTTACACTAGCTCTCGTATCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAAT
* * * *
61266403 GCCGATGGATGTCCCAGACATGTCTTACACTGGCT-T-GTATATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG--TATC--AAT
* * *
61266451 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCCCG--T-AAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAAT
*
61266494 GTCGCTGATGCATGTCCCAGACGTGTCTTACACTAGC
1 G-C-C-GATGCATGTCCCAGACATGTCTTACACTAGC
61266531 ACACATATCA
Statistics
Matches: 179, Mismatches: 31, Indels: 31
0.74 0.13 0.13
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 2 0.01
46 65 0.36
47 2 0.01
48 62 0.35
49 37 0.21
50 1 0.01
51 4 0.02
53 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAAT
Found at i:61266482 original size:48 final size:48
Alignment explanation
Indices: 61266218--61266485 Score: 219
Period size: 48 Copynumber: 5.6 Consensus size: 48
61266208 AAGTCGATCC
* * * * *
61266218 CATGTCCCAAACAGGTCTTACAATGACTT-TCATATATTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTGT-ATATCTTGAGGCCGATG
* * *
61266266 CCATGTCCCAGACAAGTCTTACACTGGC-TCT-CATCTAT-AGGCGTCGATG
1 -CATGTCCCAGACATGTCTTACACTGGCTTGTATATCT-TGAGGC--CGATG
* * * * **
61266315 CCATGTCCCAGACAGGTCTTACACTAGCTTTTATATCTCGAGGATGATG
1 -CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTTGAGGCCGATG
* * * * *
61266364 CATGTCCTAGATATGTCTTACACTAGCTCTCG--TATC--AATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-T-GTATATCTTGAGGCCGATG
*
61266410 GATGTCCCAGACATGTCTTACACTGGCTTGTATATCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTTGAGGCCGATG
*
61266458 CATGTCCTAGACATGTCTTACACTGGCT
1 CATGTCCCAGACATGTCTTACACTGGCT
61266486 CCCGTAATGT
Statistics
Matches: 177, Mismatches: 29, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 34 0.19
47 7 0.04
48 65 0.37
49 60 0.34
50 2 0.01
51 7 0.04
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTTGAGGCCGATG
Found at i:61266539 original size:94 final size:94
Alignment explanation
Indices: 61266218--61266539 Score: 289
Period size: 94 Copynumber: 3.4 Consensus size: 94
61266208 AAGTCGATCC
* * * * * *
61266218 CATGTCCCAAACAG-GTCTTACAAT-GACTTTCATATATTGAGGCCGATGCCATGTCCCAGACAA
1 CATGTCCCAGAC-GTGTCTTACACTAG-CTTACATATCTTGAGGCCGATG-CATGTCCTAGACAT
* *
61266281 GTCTTACACTGGCTCTCATCTATAG-GCGTCGATG
63 GTCTTACACTGGCTCTCGTCAAT-GCGC-T-GATG
** * ** *
61266315 CCATGTCCCAGACAG-GTCTTACACTAGCTTTTATATCTCGAGGATGATGCATGTCCTAGATATG
1 -CATGTCCCAGAC-GTGTCTTACACTAGCTTACATATCTTGAGGCCGATGCATGTCCTAGACATG
*
61266379 TCTTACACTAGCTCTCGTATCAATGC-C-GATG
64 TCTTACACTGGCTCTCG--TCAATGCGCTGATG
* * * **
61266410 GATGTCCCAGACATGTCTTACACTGGCTTGTATATCTTGAGGCCGATGCATGTCCTAGACATGTC
1 CATGTCCCAGACGTGTCTTACACTAGCTTACATATCTTGAGGCCGATGCATGTCCTAGACATGTC
*
61266475 TTACACTGGCTCCCGT-AATGTCGCTGATG
66 TTACACTGGCTCTCGTCAATG-CGCTGATG
**
61266504 CATGTCCCAGACGTGTCTTACACTAGCACACATATC
1 CATGTCCCAGACGTGTCTTACACTAGCTTACATATC
61266540 ACCCAATGTC
Statistics
Matches: 186, Mismatches: 30, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
91 4 0.02
92 2 0.01
93 1 0.01
94 102 0.55
95 4 0.02
97 27 0.15
98 41 0.22
99 5 0.03
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (94 bp):
CATGTCCCAGACGTGTCTTACACTAGCTTACATATCTTGAGGCCGATGCATGTCCTAGACATGTC
TTACACTGGCTCTCGTCAATGCGCTGATG
Found at i:61275433 original size:42 final size:39
Alignment explanation
Indices: 61275387--61275533 Score: 179
Period size: 40 Copynumber: 3.6 Consensus size: 39
61275377 GATAACTCGT
**
61275387 ACACTAAGTGCCAATACATAGTTGAAGCTATTAT-AATCTCGC
1 ACACTAAGTGCC-ATACATAGCCGAAGCTATT-TGAA--TCGC
*
61275429 ACACTAAGTGCCATATATAGCCGAAGCTATTTCGAATCGC
1 ACACTAAGTGCCATACATAGCCGAAGCTATTT-GAATCGC
* *
61275469 ACACTGAGTGCCATATATAGCCGAAGCTATCTTGAATCGC
1 ACACTAAGTGCCATACATAGCCGAAGCTAT-TTGAATCGC
*
61275509 TCACTAAGTGCCATACATAGCCGAA
1 ACACTAAGTGCCATACATAGCCGAA
61275534 TTGTCAACAA
Statistics
Matches: 95, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
40 63 0.66
41 18 0.19
42 14 0.15
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (39 bp):
ACACTAAGTGCCATACATAGCCGAAGCTATTTGAATCGC
Found at i:61276991 original size:45 final size:45
Alignment explanation
Indices: 61276939--61277025 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
61276929 TATGTAATCT
*
61276939 GAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGACATCC
* *
61276984 GAACTCATTGAGTTGTGGTCTAAGTTCGTGATATATGTGACA
1 GAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGACA
61277026 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (45 bp):
GAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGACATCC
Found at i:61283875 original size:48 final size:48
Alignment explanation
Indices: 61283804--61284169 Score: 290
Period size: 48 Copynumber: 7.6 Consensus size: 48
61283794 ATCCAAATGT
* * * * * * *
61283804 CGATGCCATATCCCGGATATGGTCTTATACAAAATCTCATGTCAGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATATCAGTGC
* * *
61283852 CGATGCCATGTCCCAGACATGGTCTTACACTAGCA-CACACATCAGCGC
1 CGATGCCATGTCCCAGACATGGTCTTACAC-AGAATCACATATCAGTGC
* * * *
61283900 CGATGCCATGTCCCAGACATGTTATTACACTGACTCACATATCCA-TGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATAT-CAGTGC
* ** *
61283948 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATTTC-GATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATATCAG-TGC
* ** * * ***
61283996 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATTTTAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATATCAGTGC
* * * * ** * * *
61284044 CGATACCATATCCCAGATATGGTCTTACACTGGCTCACACATCAATCC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATATCAGTGC
* * * * ** *
61284092 CGATGCCATGTCCTAGATATGGTCTTATACGGGGTCTCATATC-GATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATATCAG-TGC
61284140 CGATGCCATGTCCCAGACATGGTCTTACAC
1 CGATGCCATGTCCCAGACATGGTCTTACAC
61284170 GGGACCTTAT
Statistics
Matches: 265, Mismatches: 46, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
47 2 0.01
48 259 0.98
49 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACAGAATCACATATCAGTGC
Found at i:61284172 original size:48 final size:48
Alignment explanation
Indices: 61283849--61284169 Score: 399
Period size: 48 Copynumber: 6.7 Consensus size: 48
61283839 CTCATGTCAG
* * * *
61283849 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACACATCAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
* * * * *
61283897 CGCCGATGCCATGTCCCAGACATGTTATTACACTGACTCACATATCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
* *
61283945 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATTTCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
* *
61283993 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATTTTAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
** * * * *
61284041 CACCGATACCATATCCCAGATATGGTCTTACACTGGCTCACACATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
* * * * * * * *
61284089 TCCCGATGCCATGTCCTAGATATGGTCTTATACGGGGTCTCATATCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
61284137 TGCCGATGCCATGTCCCAGACATGGTCTTACAC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACAC
61284170 GGGACCTTAT
Statistics
Matches: 233, Mismatches: 40, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 233 1.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA
Found at i:61291226 original size:33 final size:33
Alignment explanation
Indices: 61291188--61291255 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
61291178 CAAGTTGACA
61291188 GATCCATTTATTTATAAACTATTAGTATGCTTT
1 GATCCATTTATTTATAAACTATTAGTATGCTTT
61291221 GATCCATTTATTTATAAACTATTAGTATGCTTT
1 GATCCATTTATTTATAAACTATTAGTATGCTTT
61291254 GA
1 GA
61291256 ATGTTGAGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (33 bp):
GATCCATTTATTTATAAACTATTAGTATGCTTT
Found at i:61294992 original size:57 final size:58
Alignment explanation
Indices: 61294931--61295042 Score: 163
Period size: 58 Copynumber: 1.9 Consensus size: 58
61294921 AAATTCACAT
* *
61294931 ACCTGTATTTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
61294988 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCTCGTTAGGCCCAA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAA
61295043 CCACATTCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 22 0.46
58 26 0.54
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:61294997 original size:29 final size:29
Alignment explanation
Indices: 61294934--61295042 Score: 132
Period size: 29 Copynumber: 3.8 Consensus size: 29
61294924 TTCACATACC
* * *
61294934 TGTATTTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
61294962 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
61294991 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
61295020 TTTATATGGCTCGTTAGGCCCAA
1 TGTATATGGCCCATTAGGCCCAA
61295043 CCACATTCAA
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.01
28 17 0.24
29 51 0.73
30 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:61296587 original size:16 final size:16
Alignment explanation
Indices: 61296566--61296597 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
61296556 ATGTTTGGGA
61296566 TTTCAGGATTTTTGAG
1 TTTCAGGATTTTTGAG
61296582 TTTCAGGATTTTTGAG
1 TTTCAGGATTTTTGAG
61296598 GCGTTACAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGAG
Found at i:61299322 original size:29 final size:29
Alignment explanation
Indices: 61299238--61299337 Score: 103
Period size: 29 Copynumber: 3.5 Consensus size: 29
61299228 GACTAAGCTC
* * *
61299238 AATCATATTCATATGGCCCATTAGGCACA
1 AATCACATTTATATGGCCCATTAGGCCCA
* * *
61299267 AATCACCTGTATATGGCCCATTGGGCCCA
1 AATCACATTTATATGGCCCATTAGGCCCA
* *
61299296 AATCACATTTATGTGGCCCGTTAGGCCC-
1 AATCACATTTATATGGCCCATTAGGCCCA
* *
61299324 AGTCACATTCATAT
1 AATCACATTTATAT
61299338 TCATGCTCAC
Statistics
Matches: 57, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
28 11 0.19
29 46 0.81
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (29 bp):
AATCACATTTATATGGCCCATTAGGCCCA
Found at i:61303156 original size:40 final size:40
Alignment explanation
Indices: 61303066--61303283 Score: 246
Period size: 40 Copynumber: 5.5 Consensus size: 40
61303056 TGGATGATAA
* * * *
61303066 CCGGGCTGAGTCCCAAAGGCATTTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCA-TTTGTGCGAGTTACTA-TAT
* * * * * *
61303107 CCGGCCTAAGTCCCAAAGGCATTTGTGCAAGTTATTACAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
61303147 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
61303187 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
61303227 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
61303266 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
61303284 TACTTGGCTT
Statistics
Matches: 155, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 106 0.68
41 19 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:61307396 original size:9 final size:9
Alignment explanation
Indices: 61307376--61307409 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
61307366 AACTATGTTG
61307376 TTGTGATATT
1 TTGTG-TATT
61307386 TTGTGTATT
1 TTGTGTATT
*
61307395 TTGTGAATT
1 TTGTGTATT
61307404 TTGTGT
1 TTGTGT
61307410 TTTATGCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 17 0.77
10 5 0.23
ACGTcount: A:0.15, C:0.00, G:0.24, T:0.62
Consensus pattern (9 bp):
TTGTGTATT
Found at i:61317079 original size:332 final size:332
Alignment explanation
Indices: 61316037--61317702 Score: 3183
Period size: 332 Copynumber: 5.0 Consensus size: 332
61316027 AATAAAATAT
61316037 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
1 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
* *
61316102 TAGCCATCATCTTCATTCAACTGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
66 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
* *
61316167 CAAGCTCGATTAGCAAGGAAAAATCAAAATTTAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
131 CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
*
61316232 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATAATTTTTTAATAATGCAATGT
196 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
61316297 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
261 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
61316362 ATTGTTA
326 ATTGTTA
*
61316369 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAAGGAAATAAGCCAAAT
1 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
61316434 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
66 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
61316499 CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGAC-
131 CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
*
61316563 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGTTTTTTTAATAATGCAATGT
196 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
61316628 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
261 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
61316693 ATTGTTA
326 ATTGTTA
61316700 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
1 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
61316765 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
66 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
61316830 CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
131 CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
61316895 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
196 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
*
61316960 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATATGGTAACATA
261 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
61317025 ATTGTTA
326 ATTGTTA
*
61317032 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAAGGAAATAAGCCAAAT
1 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
*
61317097 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAACAACCATGGTTAAGGTTTGTTCAAACTCC
66 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
*
61317162 CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAGTATCAAGTTGTGGAC-
131 CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
*
61317226 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGTTTTTTTAATAATGCAATGT
196 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
61317291 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
261 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
61317356 ATTGTTA
326 ATTGTTA
61317363 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
1 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
*
61317428 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTTTTCAAACTCC
66 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
*
61317493 TAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
131 CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
*
61317558 AAATGGTAAAAATGGACATTTTTGCATATGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
196 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
61317623 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
261 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
61317688 ATTGTTA
326 ATTGTTA
61317695 TTTTAAGT
1 TTTTAAGT
61317703 AATTTAATGT
Statistics
Matches: 1310, Mismatches: 22, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
331 652 0.50
332 658 0.50
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (332 bp):
TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
ATTGTTA
Found at i:61317303 original size:663 final size:663
Alignment explanation
Indices: 61316037--61317702 Score: 3233
Period size: 663 Copynumber: 2.5 Consensus size: 663
61316027 AATAAAATAT
61316037 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
1 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
* *
61316102 TAGCCATCATCTTCATTCAACTGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
66 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
* *
61316167 CAAGCTCGATTAGCAAGGAAAAATCAAAATTTAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
131 CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
*
61316232 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATAATTTTTTAATAATGCAATGT
196 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
61316297 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
261 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
61316362 ATTGTTATTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAAGGAAATAA
326 ATTGTTATTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAAGGAAATAA
*
61316427 GCCAAATTAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTC
391 GCCAAATTAGCTATCATCTTCATTCAACCGTTTCTACCAGCAACAACCATGGTTAAGGTTTGTTC
61316492 AAACTCCCAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTT
456 AAACTCCCAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTT
61316557 GTGGACAAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGTTTTTTTAATAATG
521 GTGGACAAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGTTTTTTTAATAATG
61316622 CAATGTGTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGT
586 CAATGTGTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGT
61316687 AACATAATTGTTA
651 AACATAATTGTTA
61316700 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
1 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
61316765 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
66 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
61316830 CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
131 CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
61316895 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
196 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
*
61316960 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATATGGTAACATA
261 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
61317025 ATTGTTATTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAAGGAAATAA
326 ATTGTTATTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAAGGAAATAA
61317090 GCCAAATTAGCTATCATCTTCATTCAACCGTTTCTACCAGCAACAACCATGGTTAAGGTTTGTTC
391 GCCAAATTAGCTATCATCTTCATTCAACCGTTTCTACCAGCAACAACCATGGTTAAGGTTTGTTC
*
61317155 AAACTCCCAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAGTATCAAGTT
456 AAACTCCCAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTT
61317220 GTGGACAAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGTTTTTTTAATAATG
521 GTGGACAAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGTTTTTTTAATAATG
61317285 CAATGTGTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGT
586 CAATGTGTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGT
61317350 AACATAATTGTTA
651 AACATAATTGTTA
61317363 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
1 TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
*
61317428 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTTTTCAAACTCC
66 TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
*
61317493 TAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
131 CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
*
61317558 AAATGGTAAAAATGGACATTTTTGCATATGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
196 AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
61317623 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
261 GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
61317688 ATTGTTATTTTAAGT
326 ATTGTTATTTTAAGT
61317703 AATTTAATGT
Statistics
Matches: 991, Mismatches: 12, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
663 991 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (663 bp):
TTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAGGGAAATAAGCCAAAT
TAGCTATCATCTTCATTCAACCGTTTCTACCAGCAGCAACCATGGTTAAGGTTTGTTCAAACTCC
CAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTTGTGGACA
AAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGATTTTTTAATAATGCAATGT
GTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGTAACATA
ATTGTTATTTTAAGTTAGGGGTATTTTGGTAAACTAATAATTAAAAGAATTAAAAAAGGAAATAA
GCCAAATTAGCTATCATCTTCATTCAACCGTTTCTACCAGCAACAACCATGGTTAAGGTTTGTTC
AAACTCCCAAGCTCGATTAGCAAGGAAAAATCGAAATTCAGGCTAAAATCGAAAAATATCAAGTT
GTGGACAAATGGTAAAAATGGACATTTTTGCATACGAGGTAAGTTCATATGTTTTTTTAATAATG
CAATGTGTAATTTAATGTTATTGCCTTGATATTAAATGAGATGTAAGTTCATGTGGAAATGTGGT
AACATAATTGTTA
Found at i:61318275 original size:58 final size:58
Alignment explanation
Indices: 61318185--61318301 Score: 216
Period size: 58 Copynumber: 2.0 Consensus size: 58
61318175 AGTGTTCAAC
61318185 GGGTAATTTGGCGAAGTATTCGTTGATGATCCCAATGAGATAAGCCACTGGTGAGTAT
1 GGGTAATTTGGCGAAGTATTCGTTGATGATCCCAATGAGATAAGCCACTGGTGAGTAT
* *
61318243 GGGTAATTTGGTGAAGTATTCGTTGATGATCCCAATGAGATAAGCCATTGGTGAGTAT
1 GGGTAATTTGGCGAAGTATTCGTTGATGATCCCAATGAGATAAGCCACTGGTGAGTAT
61318301 G
1 G
61318302 TCTTTGAGTT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.31
Consensus pattern (58 bp):
GGGTAATTTGGCGAAGTATTCGTTGATGATCCCAATGAGATAAGCCACTGGTGAGTAT
Found at i:61322513 original size:25 final size:25
Alignment explanation
Indices: 61322479--61322526 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
61322469 CTGCCAGTAT
61322479 TGATAGTGAGTAGTAAACAAAAATG
1 TGATAGTGAGTAGTAAACAAAAATG
61322504 TGATAGTGAGTAGTAAACAAAAA
1 TGATAGTGAGTAGTAAACAAAAA
61322527 GAGTACAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.50, C:0.04, G:0.23, T:0.23
Consensus pattern (25 bp):
TGATAGTGAGTAGTAAACAAAAATG
Found at i:61322536 original size:25 final size:25
Alignment explanation
Indices: 61322483--61322538 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
61322473 CAGTATTGAT
* *
61322483 AGTGAGTAGTAAACAAAAATGTGAT
1 AGTGAGTAGTAAACAAAAAAGTGAC
61322508 AGTGAGTAGTAAACAAAAAGAGT-AC
1 AGTGAGTAGTAAACAAAAA-AGTGAC
61322533 AGTGAG
1 AGTGAG
61322539 GATCGACTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 26 0.93
26 2 0.07
ACGTcount: A:0.48, C:0.05, G:0.27, T:0.20
Consensus pattern (25 bp):
AGTGAGTAGTAAACAAAAAAGTGAC
Found at i:61324625 original size:27 final size:28
Alignment explanation
Indices: 61324541--61324638 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
61324531 GTTGATTTCG
* * * *
61324541 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
61324570 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
61324598 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
61324625 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
61324639 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:61324649 original size:27 final size:27
Alignment explanation
Indices: 61324569--61324651 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
61324559 TAAATTGTAC
* *
61324569 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
61324597 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
61324624 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
61324651 A
1 A
61324652 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:61324652 original size:29 final size:27
Alignment explanation
Indices: 61324541--61324652 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
61324531 GTTGATTTCG
** * *
61324541 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
61324570 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
61324598 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
61324625 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
61324653 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:61330270 original size:28 final size:27
Alignment explanation
Indices: 61330200--61330286 Score: 131
Period size: 28 Copynumber: 3.2 Consensus size: 27
61330190 ACAAGGTCAT
* *
61330200 CAGATACAGATATTGTGGCAGAGCCAC
1 CAGAAACAGATATTGTGGCATAGCCAC
61330227 CAG-AACAGATATTTGTGGCATAGCCAC
1 CAGAAACAGATA-TTGTGGCATAGCCAC
61330254 CAGAAACAGATAGTTGTGGCATAGCCAC
1 CAGAAACAGATA-TTGTGGCATAGCCAC
61330282 CAGAA
1 CAGAA
61330287 TGCTTCCTCC
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 7 0.13
27 20 0.36
28 28 0.51
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CAGAAACAGATATTGTGGCATAGCCAC
Found at i:61332314 original size:40 final size:40
Alignment explanation
Indices: 61332266--61332488 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
61332256 TACTTACTCG
* * *
61332266 AATGCCTTCGGGACATAGCCCGGATATAGTAACTTGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
*
61332306 AATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * *
61332346 AATACCTTCGGGACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* *
61332386 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * * *
61332426 AATGCCTTCGGGACTTAGCTCGGA-ACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
61332466 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
61332489 TTATCATCCG
Statistics
Matches: 166, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 166 1.00
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:61348368 original size:54 final size:54
Alignment explanation
Indices: 61348279--61348393 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 54
61348269 GCATGGCTGT
* *
61348279 CAGAACAGATATTGTGACAAAGTCACCAGATACAGATA-TTGTGGCAG-AGCCAC
1 CAGAACAGATATTGTGACAAAGCCACCAGAAACAGATAGTTGTGGC-GTAGCCAC
* *
61348332 CAGAACAGATATTTGTGGCATAGCCACCAGAAACAGATAGTTGTGGCGTAGCCAC
1 CAGAACAGATA-TTGTGACAAAGCCACCAGAAACAGATAGTTGTGGCGTAGCCAC
*
61348387 CAAAACA
1 CAGAACA
61348394 CTTCCTCCAT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
53 11 0.20
54 24 0.44
55 19 0.35
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (54 bp):
CAGAACAGATATTGTGACAAAGCCACCAGAAACAGATAGTTGTGGCGTAGCCAC
Found at i:61348375 original size:28 final size:27
Alignment explanation
Indices: 61348282--61348393 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
61348272 TGGCTGTCAG
* * *
61348282 AACAGATATTGTGACAAAGTCACCAGA
1 AACAGATATTGTGGCATAGCCACCAGA
* *
61348309 TACAGATATTGTGGCAGAGCCACCAG-
1 AACAGATATTGTGGCATAGCCACCAGA
61348335 AACAGATATTTGTGGCATAGCCACCAGA
1 AACAGATA-TTGTGGCATAGCCACCAGA
*
61348363 AACAGATAGTTGTGGCGTAGCCACCA-A
1 AACAGATA-TTGTGGCATAGCCACCAGA
61348390 AACA
1 AACA
61348394 CTTCCTCCAT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.09
27 44 0.59
28 24 0.32
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (27 bp):
AACAGATATTGTGGCATAGCCACCAGA
Found at i:61353314 original size:24 final size:24
Alignment explanation
Indices: 61353258--61353353 Score: 111
Period size: 24 Copynumber: 3.9 Consensus size: 24
61353248 GAGGCATGGT
**
61353258 CGGTAAGCTCCTCCTGAGCTGATAAA
1 CGGTAAGCT-CTATTGAGCTGA-AAA
**
61353284 CAATAAGCTCTATTGAGCTGAAAA
1 CGGTAAGCTCTATTGAGCTGAAAA
* *
61353308 CGGTAAGCTCAATTGAGATGAAAA
1 CGGTAAGCTCTATTGAGCTGAAAA
*
61353332 CGGTAAGCTCTATCGAGCTGAA
1 CGGTAAGCTCTATTGAGCTGAA
61353354 TCAGTAAACT
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
24 42 0.71
25 10 0.17
26 7 0.12
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (24 bp):
CGGTAAGCTCTATTGAGCTGAAAA
Found at i:61357121 original size:21 final size:20
Alignment explanation
Indices: 61357095--61357134 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
61357085 TGAAATGCGT
61357095 GAATAT-ATATAAGCTATGGCC
1 GAATATGAT-TAAGCT-TGGCC
61357116 GAATATGATTAAGCTTGGC
1 GAATATGATTAAGCTTGGC
61357135 TATTATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 12 0.67
22 2 0.11
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (20 bp):
GAATATGATTAAGCTTGGCC
Found at i:61358809 original size:18 final size:19
Alignment explanation
Indices: 61358769--61358812 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
61358759 TGCATGGTAA
* * *
61358769 TATAAATTCGTTAGATATT
1 TATAAATTCATTAAATATG
61358788 TATAAATT-ATTAAATATG
1 TATAAATTCATTAAATATG
61358806 TATAAAT
1 TATAAAT
61358813 GAATTGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (19 bp):
TATAAATTCATTAAATATG
Found at i:61359033 original size:11 final size:11
Alignment explanation
Indices: 61359017--61359043 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
61359007 GAAGAATAGA
61359017 AATATAGGTTT
1 AATATAGGTTT
61359028 AATATAGGTTT
1 AATATAGGTTT
61359039 AATAT
1 AATAT
61359044 TGAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (11 bp):
AATATAGGTTT
Found at i:61366990 original size:18 final size:19
Alignment explanation
Indices: 61366949--61366993 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
61366939 GTGCATGGTA
* *
61366949 ATATAAATTCGTTAGATAT
1 ATATAAATTCATTAAATAT
61366968 ATATAAATT-ATTAAATAT
1 ATATAAATTCATTAAATAT
*
61366986 GTATAAAT
1 ATATAAAT
61366994 GAATTGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (19 bp):
ATATAAATTCATTAAATAT
Found at i:61367214 original size:11 final size:11
Alignment explanation
Indices: 61367198--61367224 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
61367188 TAAGAATAGA
61367198 AATATAGGTTT
1 AATATAGGTTT
61367209 AATATAGGTTT
1 AATATAGGTTT
61367220 AATAT
1 AATAT
61367225 TGAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (11 bp):
AATATAGGTTT
Found at i:61367976 original size:7 final size:7
Alignment explanation
Indices: 61367958--61367986 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
61367948 GGCCGAAGCC
61367958 ATCTCA-
1 ATCTCAT
61367964 ATCTCAT
1 ATCTCAT
61367971 ATCTCAT
1 ATCTCAT
61367978 ATCTCAT
1 ATCTCAT
61367985 AT
1 AT
61367987 AATGCTCACT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (7 bp):
ATCTCAT
Found at i:61368651 original size:7 final size:8
Alignment explanation
Indices: 61368631--61368658 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
61368621 AACCATGAAT
61368631 ATTTTTCA
1 ATTTTTCA
61368639 ATTTTTCA
1 ATTTTTCA
61368647 ATTTTTCA
1 ATTTTTCA
61368655 ATTT
1 ATTT
61368659 AACCCCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.25, C:0.11, G:0.00, T:0.64
Consensus pattern (8 bp):
ATTTTTCA
Found at i:61375946 original size:15 final size:15
Alignment explanation
Indices: 61375928--61375956 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
61375918 TACAACTAAA
61375928 CTATCAATTTTCAAT
1 CTATCAATTTTCAAT
61375943 CTATCAATTTTCAA
1 CTATCAATTTTCAA
61375957 GCTAAAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (15 bp):
CTATCAATTTTCAAT
Found at i:61383007 original size:21 final size:22
Alignment explanation
Indices: 61382958--61383007 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
61382948 TTATGGAATT
*
61382958 TATACAATTTACAAACACAACA
1 TATACAATTAACAAACACAACA
61382980 T-TA-AATTCAACAAA-A-AACA
1 TATACAATT-AACAAACACAACA
61382999 TATACAATT
1 TATACAATT
61383008 TAGTTACACG
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
19 5 0.21
20 7 0.29
21 11 0.46
22 1 0.04
ACGTcount: A:0.56, C:0.18, G:0.00, T:0.26
Consensus pattern (22 bp):
TATACAATTAACAAACACAACA
Found at i:61385382 original size:49 final size:49
Alignment explanation
Indices: 61385300--61385457 Score: 284
Period size: 49 Copynumber: 3.2 Consensus size: 49
61385290 CTTACTTTGA
*
61385300 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
61385347 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
61385396 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
61385445 GAATGTGATAAGT
1 GAATGTGA-AAGT
61385458 CCCGAAGGGC
Statistics
Matches: 107, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
47 13 0.12
49 90 0.84
50 4 0.04
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:61385628 original size:37 final size:37
Alignment explanation
Indices: 61385572--61385650 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
61385562 CCGAGCTCTA
* * *
61385572 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGCT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGCT
* *
61385609 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGCT
61385646 AAGAC
1 AAGAC
61385651 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGCT
Found at i:61387558 original size:42 final size:43
Alignment explanation
Indices: 61387511--61387612 Score: 197
Period size: 42 Copynumber: 2.4 Consensus size: 43
61387501 TTGGTTTTCA
61387511 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT-
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
61387553 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
61387596 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
61387613 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 42 0.71
43 17 0.29
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:61387629 original size:29 final size:29
Alignment explanation
Indices: 61387594--61387667 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
61387584 GTTGTGAGAT
* *
61387594 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
61387623 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
61387652 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61387668 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:61388100 original size:40 final size:40
Alignment explanation
Indices: 61388056--61388323 Score: 302
Period size: 40 Copynumber: 6.9 Consensus size: 40
61388046 GAGTTACTAA
*
61388056 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
61388096 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTA--G-TG-
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
61388132 A-----GCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
61388167 ATTCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
61388207 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * * *
61388247 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
61388287 ATCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
61388324 CGTGTATTCG
Statistics
Matches: 199, Mismatches: 20, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
31 27 0.14
33 1 0.01
34 2 0.01
35 1 0.01
36 1 0.01
37 2 0.01
38 1 0.01
40 164 0.82
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:61388114 original size:80 final size:80
Alignment explanation
Indices: 61388015--61388323 Score: 275
Period size: 80 Copynumber: 4.0 Consensus size: 80
61388005 TAAGTGACCA
* *
61388015 TATCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAG
1 TATCCGGGCTAAG-TCCCGAAGAGCATTCGTGCGAGTTA-TAAATCCGGGCTAAGTCCCGAAGAG
*
61388078 CATTCATGCTAGCGATG
64 CATTCATGCTAGTGATG
* * *
61388095 TATCCGGGCTAAGTCCCGAAGAGCATTCATGC------T-AGT--GAGCTAAGTCCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCGAGTTATAAATCCGGGCTAAGTCCCGAAGAGCA
61388151 TTCATGCTAGTGATG
66 TTCATGCTAGTGATG
* * * * ** *
61388166 TATTCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCGAGTTATAAATCCGGGCTAAGTCCCGAAGAGCA
* *
61388231 TTCGTGCTAGTGATA
66 TTCATGCTAGTGATG
* ** * * *
61388246 TATCCGTGCTAAACCCCAAAGAGCATTCGTGCTG-GTGT-TATATCCGGGCTAGGTCCCGAAGAG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGC-GAGT-TATAAATCCGGGCTAAGTCCCGAAGAG
* * *
61388309 TAATCATGCTGGTGA
64 CATTCATGCTAGTGA
61388324 CGTGTATTCG
Statistics
Matches: 186, Mismatches: 30, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
71 62 0.33
73 2 0.01
74 1 0.01
77 1 0.01
78 1 0.01
79 1 0.01
80 110 0.59
81 8 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCGAGTTATAAATCCGGGCTAAGTCCCGAAGAGCA
TTCATGCTAGTGATG
Found at i:61388140 original size:31 final size:31
Alignment explanation
Indices: 61388102--61388163 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
61388092 ATGTATCCGG
61388102 GCTAAGTCCCGAAGAGCATTCATGCTAGTGA
1 GCTAAGTCCCGAAGAGCATTCATGCTAGTGA
61388133 GCTAAGTCCCGAAGAGCATTCATGCTAGTGA
1 GCTAAGTCCCGAAGAGCATTCATGCTAGTGA
61388164 TGTATTCGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.23
Consensus pattern (31 bp):
GCTAAGTCCCGAAGAGCATTCATGCTAGTGA
Found at i:61388178 original size:71 final size:71
Alignment explanation
Indices: 61388062--61388203 Score: 248
Period size: 71 Copynumber: 2.0 Consensus size: 71
61388052 CTAAATCCGG
61388062 GCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGC
1 GCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGC
61388127 TAGTGA
66 TAGTGA
* * * *
61388133 GCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATTCGGGCTAAGTTCCGAAGAGCATTCGTGC
1 GCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGC
61388198 TAGTGA
66 TAGTGA
61388204 TGTATCCGGG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (71 bp):
GCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGC
TAGTGA
Found at i:61391024 original size:24 final size:23
Alignment explanation
Indices: 61390991--61391048 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
61390981 AGTTGAAAAG
61390991 TATAA-AATAAAATAAATAATGATA
1 TATAATAATAAAAT-AAT-ATGATA
*
61391015 -ATAATAATAAAATGATATGATA
1 TATAATAATAAAATAATATGATA
61391037 TATATATAATAA
1 TATA-ATAATAA
61391049 TGTTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 6 0.20
23 9 0.30
24 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAATATGATA
Found at i:61391401 original size:49 final size:49
Alignment explanation
Indices: 61391319--61391476 Score: 284
Period size: 49 Copynumber: 3.2 Consensus size: 49
61391309 CTTACTTTGA
*
61391319 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
61391366 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
61391415 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
61391464 GAATGTGATAAGT
1 GAATGTGA-AAGT
61391477 CCCGAAGGGC
Statistics
Matches: 107, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
47 13 0.12
49 90 0.84
50 4 0.04
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:61391650 original size:37 final size:37
Alignment explanation
Indices: 61391594--61391672 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
61391584 CCGAGCTCTA
* * *
61391594 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
61391631 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
61391668 AAGAC
1 AAGAC
61391673 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:61396963 original size:40 final size:39
Alignment explanation
Indices: 61396866--61397106 Score: 296
Period size: 40 Copynumber: 6.2 Consensus size: 39
61396856 CGGATGATAA
* * *
61396866 CCGGACTAAGTCCTGAAGGCATTTGTG-TAGTGACTA-AT
1 CCGG-CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
61396904 TCGGCTAAG--CCTAA-GCATTTGTGCGAGTTACTATAT
1 CCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
61396940 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCG-GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
61396980 CCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
61397019 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
61397059 CCGGGCTAAGTCCCGAAGGCATTTGAGTAAG-TAGCTATAT
1 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
61397099 CCGGCTAA
1 CCGGCTAA
61397107 ATTTCGAAGG
Statistics
Matches: 181, Mismatches: 14, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
34 9 0.05
35 10 0.06
36 4 0.02
37 11 0.06
38 3 0.02
39 49 0.27
40 95 0.52
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (39 bp):
CCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:61397017 original size:79 final size:79
Alignment explanation
Indices: 61396862--61397083 Score: 303
Period size: 79 Copynumber: 2.9 Consensus size: 79
61396852 TATTCGGATG
* * * * *
61396862 ATAACCG-GACTAAGTCCTGAAGGCATTTGTG-TAGTGACTA-ATTCGGCTAAG--CCTAA-GCA
1 ATAACCGAG-CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCA
61396921 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
*
61396936 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCAT
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCAT
61397001 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
* * *
61397015 ATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTCCCGAAGGCA
61397080 TTTG
65 TTTG
61397084 AGTAAGTAGC
Statistics
Matches: 131, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
74 27 0.21
75 8 0.06
76 10 0.08
78 4 0.03
79 60 0.46
80 22 0.17
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (79 bp):
ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:61405281 original size:39 final size:41
Alignment explanation
Indices: 61405215--61405364 Score: 200
Period size: 40 Copynumber: 3.8 Consensus size: 41
61405205 ATTTGAATGA
* * *
61405215 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
61405255 GATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGATAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
61405295 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
61405335 G-CCCGGGTTAAGACCCGAAGGCAATTGTGC
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGC
61405365 TTGTGGTAAT
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
39 31 0.32
40 67 0.68
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (41 bp):
GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:61405347 original size:79 final size:80
Alignment explanation
Indices: 61405216--61405364 Score: 203
Period size: 79 Copynumber: 1.9 Consensus size: 80
61405206 TTTGAATGAG
* * * * * *
61405216 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGA-CCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGATATGACCCGGGCTAAGACCCGAAGGCAAT
61405280 TGTGCGAGTTGATAT
66 TGTGCGAGTTGATAT
* *
61405295 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATG-CCCGGGTTAAGACCCGAAGGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TGATATGACCCGGGCTAAGACCCGAAGGCAA
61405359 TTGTGC
65 TTGTGC
61405365 TTGTGGTAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
79 40 0.67
80 20 0.33
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGATATGACCCGGGCTAAGACCCGAAGGCAAT
TGTGCGAGTTGATAT
Found at i:61408537 original size:40 final size:40
Alignment explanation
Indices: 61408432--61408655 Score: 335
Period size: 40 Copynumber: 5.6 Consensus size: 40
61408422 CGGATGATAA
* *
61408432 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
61408472 CCGAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
61408511 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
61408551 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
61408591 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
61408631 CCAGGCTAAGTCTCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
61408656 AGTAAGTAGC
Statistics
Matches: 170, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
39 34 0.20
40 136 0.80
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:61411588 original size:55 final size:53
Alignment explanation
Indices: 61411467--61411652 Score: 169
Period size: 55 Copynumber: 3.4 Consensus size: 53
61411457 CAATGCCTCG
* *
61411467 ACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATACCTTG
1 ACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATACCTTC
* * * **
61411520 GCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATGCCATGTCTTC
1 ACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATGCCATACCTTC
* * * * * *
61411575 ACATGGTCTTACATGGTATCATTGCCTTA-GAAACCTTACCAATTTCCATTCCTTG
1 ACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TGCCATACCTTC
* *
61411630 GCATGGTCTTACATGGTATCCTT
1 ACATGGTCTTACATGGGATCCTT
61411653 AAACCCTAAT
Statistics
Matches: 109, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 28 0.26
54 8 0.07
55 70 0.64
56 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.35
Consensus pattern (53 bp):
ACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATACCTTC
Found at i:61421878 original size:38 final size:38
Alignment explanation
Indices: 61421827--61421906 Score: 160
Period size: 38 Copynumber: 2.1 Consensus size: 38
61421817 AATAAGTTAG
61421827 TCATATAATCATGTATTATGTAATTTAACTAGATGAGC
1 TCATATAATCATGTATTATGTAATTTAACTAGATGAGC
61421865 TCATATAATCATGTATTATGTAATTTAACTAGATGAGC
1 TCATATAATCATGTATTATGTAATTTAACTAGATGAGC
61421903 TCAT
1 TCAT
61421907 CATTTAACAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.40
Consensus pattern (38 bp):
TCATATAATCATGTATTATGTAATTTAACTAGATGAGC
Found at i:61428879 original size:19 final size:18
Alignment explanation
Indices: 61428828--61428882 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 18
61428818 GTTCATCAAA
61428828 ATTTTA-AAAAAATAATT
1 ATTTTATAAAAAATAATT
61428845 ATTTTAT---AAATGAATT
1 ATTTTATAAAAAAT-AATT
*
61428861 GTTTTATAAAAAATAAATT
1 ATTTTATAAAAAAT-AATT
61428880 ATT
1 ATT
61428883 ATTTTTCATT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 4 0.13
16 10 0.33
17 6 0.20
19 10 0.33
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (18 bp):
ATTTTATAAAAAATAATT
Found at i:61432775 original size:27 final size:26
Alignment explanation
Indices: 61432744--61432895 Score: 155
Period size: 27 Copynumber: 5.7 Consensus size: 26
61432734 GGCGATTAGC
61432744 AAAATTACCAAAATACTCCTGATTTGTG
1 AAAATTACCAAAATAC-CCTGATTTG-G
* * *
61432772 -AAATTACCGAAATACCCTCGATGTGT
1 AAAATTACCAAAATACCCT-GATTTGG
61432798 AAAATTACCAAAATACCCCTGATTTGG
1 AAAATTACCAAAATA-CCCTGATTTGG
* *
61432825 AAAATTACTAAAATACCCTTAATTTGG
1 AAAATTACCAAAATACCC-TGATTTGG
* **
61432852 AAAATTACAAAAATACCCCTGATTTAC
1 AAAATTACCAAAATA-CCCTGATTTGG
61432879 AAAATTA-CAGAAATACC
1 AAAATTACCA-AAATACC
61432896 ATTGGTTTGT
Statistics
Matches: 105, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
26 9 0.09
27 89 0.85
28 7 0.07
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTGATTTGG
Found at i:61432909 original size:27 final size:27
Alignment explanation
Indices: 61432744--61432933 Score: 154
Period size: 27 Copynumber: 7.0 Consensus size: 27
61432734 GGCGATTAGC
61432744 AAAATTACCA-AAATACTCC-TGATTTGT
1 AAAATTA-CAGAAATAC-CCTTGATTTGT
* * * *
61432771 GAAATTACCGAAATACCCTCGATGTGT
1 AAAATTACAGAAATACCCTTGATTTGT
* *
61432798 AAAATTACCA-AAATACCCCTGATTTGG
1 AAAATTA-CAGAAATACCCTTGATTTGT
* *
61432825 AAAATTACTA-AAATACCCTTAATTTGG
1 AAAATTAC-AGAAATACCCTTGATTTGT
* * **
61432852 AAAATTACAAAAATACCCCTGATTTAC
1 AAAATTACAGAAATACCCTTGATTTGT
* *
61432879 AAAATTACAGAAATACCATTGGTTTGT
1 AAAATTACAGAAATACCCTTGATTTGT
** * *
61432906 AAAATTATTGAAATATCCTTGGTTTGT
1 AAAATTACAGAAATACCCTTGATTTGT
61432933 A
1 A
61432934 GATTTACCAA
Statistics
Matches: 132, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
26 5 0.04
27 126 0.95
28 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.32
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTGATTTGT
Found at i:61432910 original size:54 final size:54
Alignment explanation
Indices: 61432744--61432912 Score: 205
Period size: 54 Copynumber: 3.1 Consensus size: 54
61432734 GGCGATTAGC
* ** * * *
61432744 AAAATTACCAAAATACTCCTGATTTGTGAAATTACCGAAATACCCTCGATGTGT
1 AAAATTACCAAAATACCCCTGATTTGCAAAATTACAGAAATACCCTTGATTTGT
* * *
61432798 AAAATTACCAAAATACCCCTGATTTGGAAAATTACTA-AAATACCCTTAATTTGG
1 AAAATTACCAAAATACCCCTGATTTGCAAAATTAC-AGAAATACCCTTGATTTGT
* * * *
61432852 AAAATTACAAAAATACCCCTGATTTACAAAATTACAGAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGCAAAATTACAGAAATACCCTTGATTTGT
61432906 AAAATTA
1 AAAATTA
61432913 TTGAAATATC
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 97 0.99
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGATTTGCAAAATTACAGAAATACCCTTGATTTGT
Found at i:61433227 original size:41 final size:41
Alignment explanation
Indices: 61433182--61433300 Score: 193
Period size: 41 Copynumber: 2.9 Consensus size: 41
61433172 GAAGAAATTG
* *
61433182 AGGATCGCATGGTTGCTTGACGACCGTGGATCCATCGATTT
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
*
61433223 AGGATCGCATGGTTGCTTGATGACCGTGGATCCACCGATTA
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
* *
61433264 AGGATGGCATAGTTGCTTGACGACCGTGGATCCACCG
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
61433301 GTGGCTTTTA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (41 bp):
AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
Found at i:61436411 original size:27 final size:27
Alignment explanation
Indices: 61436381--61436479 Score: 135
Period size: 27 Copynumber: 3.7 Consensus size: 27
61436371 CTCATATCTG
* * *
61436381 TAGGCTAGTATTATTGAAATGCCCCTA
1 TAGGGTAGAATTACTGAAATGCCCCTA
**
61436408 TAGGGTAGAATTACTGAAATATCCCTA
1 TAGGGTAGAATTACTGAAATGCCCCTA
* *
61436435 TAGGATAGAATTACTGAAATGCCCCTG
1 TAGGGTAGAATTACTGAAATGCCCCTA
61436462 TAGGGTAGAATTACTGAA
1 TAGGGTAGAATTACTGAA
61436480 TACTCTTGGT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.29
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATGCCCCTA
Found at i:61436551 original size:27 final size:26
Alignment explanation
Indices: 61436494--61436771 Score: 188
Period size: 27 Copynumber: 10.3 Consensus size: 26
61436484 CTTGGTTTAC
* * *
61436494 AAAATTACCAAAATACCTTCGATTAGC
1 AAAATTACCAAAATACCCT-GATTTGT
*
61436521 AAAATTACCAAAATATCCCTGGTTTGT
1 AAAATTACCAAAATA-CCCTGATTTGT
* * *
61436548 AAAATTACCATAATGCCCTTGGTTTGT
1 AAAATTACCAAAATACCC-TGATTTGT
* *
61436575 AAAATTACCAAAATACCCTTAATTTTT
1 AAAATTACCAAAATACCC-TGATTTGT
* * * *
61436602 GAAATTACCGAAATAACCTCAATTTGT
1 AAAATTACCAAAATACCCT-GATTTGT
61436629 AAAATTACC-AAATACCTCTGATTTGT
1 AAAATTACCAAAATACC-CTGATTTGT
* * *
61436655 AAAATTACCGAAATACCATTGATTTGG
1 AAAATTACCAAAATACC-CTGATTTGT
* * **
61436682 AAAATT-CCAGAAATGTCCTTGATTTAC
1 AAAATTACCA-AAAT-ACCCTGATTTGT
61436709 AAAATTA-CAGAAATACCCTTGACTTT-T
1 AAAATTACCA-AAATACCC-TGA-TTTGT
* *
61436736 AAAAATTA-CAGAAATACCATTGGTTTGT
1 -AAAATTACCA-AAATACC-CTGATTTGT
61436764 AAAATTAC
1 AAAATTAC
61436772 TGAGATAACC
Statistics
Matches: 207, Mismatches: 30, Indels: 27
0.78 0.11 0.10
Matches are distributed among these distances:
26 29 0.14
27 150 0.72
28 28 0.14
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTGATTTGT
Found at i:61437101 original size:41 final size:41
Alignment explanation
Indices: 61437049--61437172 Score: 178
Period size: 41 Copynumber: 3.0 Consensus size: 41
61437039 GAGGAAAAAA
*
61437049 TTGAAGATCGCATGGTTGCTTGATGACCGTGGATCCACCGG
1 TTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCGG
* * *
61437090 TTGAGGATCGCATGGTTACTTGACT-ACTGTGGATCCACCGA
1 TTGAGGATCGCATGGTTGCTTGA-TGACCGTGGATCCACCGG
* *
61437131 TTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGG
1 TTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCGG
61437172 T
1 T
61437173 GGCTTTTAAG
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
41 71 0.99
42 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (41 bp):
TTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCGG
Found at i:61437364 original size:22 final size:22
Alignment explanation
Indices: 61437312--61437376 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
61437302 GCCAGTTATT
* *
61437312 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
61437334 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
61437356 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
61437377 ATGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:61439070 original size:16 final size:16
Alignment explanation
Indices: 61439049--61439081 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
61439039 AACTCTATGA
61439049 GTAGAATGATACATTG
1 GTAGAATGATACATTG
61439065 GTAGAATGATACATTG
1 GTAGAATGATACATTG
61439081 G
1 G
61439082 ACTGGACCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.30
Consensus pattern (16 bp):
GTAGAATGATACATTG
Found at i:61440945 original size:26 final size:26
Alignment explanation
Indices: 61440909--61440961 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
61440899 TCGATATCGA
61440909 TAGCCAAGCTATGGTCTTACATGATG
1 TAGCCAAGCTATGGTCTTACATGATG
61440935 TAGCCAAGCTATGGTCTTACATGATG
1 TAGCCAAGCTATGGTCTTACATGATG
61440961 T
1 T
61440962 CCCATATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
TAGCCAAGCTATGGTCTTACATGATG
Found at i:61450917 original size:28 final size:28
Alignment explanation
Indices: 61450886--61450969 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
61450876 AGTTTTGATC
61450886 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
61450914 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
*
61450936 ACGTGTGTAGTACTAAGTGCAAGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
61450964 ACGTGT
1 ACGTGT
61450970 ACCGGATTGA
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 2 0.05
24 3 0.07
25 5 0.12
26 3 0.07
27 2 0.05
28 14 0.34
29 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:61450919 original size:101 final size:102
Alignment explanation
Indices: 61450732--61451167 Score: 429
Period size: 101 Copynumber: 4.3 Consensus size: 102
61450722 GTTGTGAGAA
* * * * * * * *
61450732 CACATGTGTAGTACTATGTGCAGGCTACTATGTGT-TTAAGACAGTTTTAGGCCACGTGTTTAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATAG--ATATGTCACGTGTGTAGT
61450796 ACTAAGTGCAGGCTACTACGTGTACCAGATT-ATTAGGT
64 ACTAAGTGCAGGCTACTACGTGTACCAGATTAATTAGGT
* ** * *
61450834 CCCATGTGTAGTACTAAGTGCAGGCTACTATACGTACTC-GATAGTTTTGATCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATAGATATG-TCACGTGTGTAGTA
* **
61450898 CTAAGTGCAGGCTACTACGTGTATCAGA-TGGTTAGGT
65 CTAAGTGCAGGCTACTACGTGTACCAGATTAATTAGGT
* * * * * * ** *
61450935 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTAC-CGGATTGATAGGTTGCATGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATAGATATGTCACGTGTGTAGTAC
* * * *
61450999 TAAGTGCAGGCTACTATGTGTACCCG-TTAACTTCGAT
66 TAAGTGCAGGCTACTACGTGTACCAGATTAA-TTAGGT
* * * * * *
61451036 CACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTA-TCAGATGGATAAGTCACATATGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATAGATATGTCACGTGTGTAGTAC
* * *
61451100 TAAGTGCAGGCTACTACATGTACCAGATTGA-TAAGT
66 TAAGTGCAGGCTACTACGTGTACCAGATTAATTAGGT
*
61451136 CGCATGTGTAGTACTAAGTGCAGGCTACTATG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATG
61451168 CATACCAGAG
Statistics
Matches: 276, Mismatches: 50, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
100 72 0.26
101 165 0.60
102 38 0.14
103 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (102 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATAGATATGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCAGATTAATTAGGT
Found at i:61451012 original size:151 final size:151
Alignment explanation
Indices: 61450736--61451166 Score: 594
Period size: 151 Copynumber: 2.8 Consensus size: 151
61450726 TGAGAACACA
* * * * * * *
61450736 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGCCACGTGTTTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGA-TG-GTTAGGTCACGTGTGTAGTACTAA
*
61450801 GTGCAGGCTACTACGTGTACCAGATT-ATTAGGTCCCATGTGTAGTACTAAGTGCAGGCTACTAT
64 GTGCAGGCTACTACGTGTACCAGATTGA-TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTAT
* ** *
61450865 ACGTACTCGATAGTTTTGATCACG
128 ACGTACCCGATAACTTCGATCACG
*
61450889 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* * * **
61450954 GCAAGCTACTACGTGTACCGGATTGATAGGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGTG
66 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATACG
*
61451019 TACCCGTTAACTTCGATCACG
131 TACCCGATAACTTCGATCACG
* * * * *
61451040 TGTGTAGTACTAAGTGCAAGCTACTATGTGTATCAGATGGATAAGTCACATATGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* *
61451105 GCAGGCTACTACATGTACCAGATTGATAAGTCGCATGTGTAGTACTAAGTGCAGGCTACTAT
66 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTAT
61451167 GCATACCAGA
Statistics
Matches: 247, Mismatches: 30, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
151 212 0.86
152 2 0.01
153 33 0.13
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATACG
TACCCGATAACTTCGATCACG
Found at i:61451174 original size:50 final size:50
Alignment explanation
Indices: 61450732--61451176 Score: 405
Period size: 50 Copynumber: 8.8 Consensus size: 50
61450722 GTTGTGAGAA
* * * *
61450732 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-CCAGATTGATAGGT
* * *
61450784 CACGTGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT-ATTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA-TAGGT
* ** * * * *
61450834 CCCATGTGTAGTACTAAGTGCAGGCTACTATACGTACTC-GATAGTTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-CAGATTG-ATAGGT
* * * * *
61450885 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGT
* * * *
61450935 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGT
** * * * *
61450985 TGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCG-TTAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA--TAGGT
* * * * *
61451036 CACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGT
* ** *
61451086 CACATATGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGT
* **
61451136 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
61451177 GAGCTTCAGT
Statistics
Matches: 320, Mismatches: 64, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
48 3 0.01
49 6 0.02
50 203 0.63
51 76 0.24
52 32 0.10
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGT
Found at i:61455426 original size:41 final size:41
Alignment explanation
Indices: 61455381--61455459 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
61455371 CAAGAAATTA
* * *
61455381 TGGAATCTATTGTTGTTTAATCTCTGGTTCAATGATCTTTG
1 TGGAATCTATTGTTATTCAACCTCTGGTTCAATGATCTTTG
* *
61455422 TGGAATCTATTGTTATTCAACCTCTGGTTTAGTGATCT
1 TGGAATCTATTGTTATTCAACCTCTGGTTCAATGATCT
61455460 GTTGCTGTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.20, C:0.14, G:0.19, T:0.47
Consensus pattern (41 bp):
TGGAATCTATTGTTATTCAACCTCTGGTTCAATGATCTTTG
Found at i:61460756 original size:44 final size:40
Alignment explanation
Indices: 61460663--61460758 Score: 104
Period size: 39 Copynumber: 2.3 Consensus size: 40
61460653 CAAGTTGATT
* *
61460663 TGGCACTAAGTGTGCGATTCAAAATAGCTTCGGCTAATGA
1 TGGCACTAAGTGTACGATCCAAAATAGCTTCGGCTAATGA
* * *
61460703 -GGCACTAAGTGTACGATACCGAGATAGCTTCGGTTAATTAAGA
1 TGGCACTAAGTGTACGAT-CCAAAATAGCTTCGGCTAA-T--GA
61460746 TGGCACTAAGTGT
1 TGGCACTAAGTGT
61460759 GCGGAAATCG
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
39 16 0.35
40 15 0.33
41 1 0.02
43 2 0.04
44 12 0.26
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (40 bp):
TGGCACTAAGTGTACGATCCAAAATAGCTTCGGCTAATGA
Found at i:61461832 original size:81 final size:81
Alignment explanation
Indices: 61461700--61461849 Score: 237
Period size: 81 Copynumber: 1.9 Consensus size: 81
61461690 TTAGTTTACC
* * * *
61461700 AAATTACCAAAATACCCTTGGTTTACAAAATTACTAAAATACCCCTAGTTTGTAAGATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
61461765 ATACACTTTGTTTATA
66 ATACACTTTGTTTATA
** *
61461781 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
61461846 ATAC
66 ATAC
61461850 CTCTGATTTG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACACTTTGTTTATA
Found at i:61461866 original size:81 final size:81
Alignment explanation
Indices: 61461700--61461878 Score: 234
Period size: 81 Copynumber: 2.2 Consensus size: 81
61461690 TTAGTTTACC
* * * *
61461700 AAATTACCAAAATACCCTTGGTTTACAAAATTACTAAAATACCCCTAGTTTGTAAGATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
*
61461765 ATACACTTTGTTTATA
66 ATACACTCTGTTTATA
** *
61461781 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
* *
61461846 ATAC-CTCTGATTTGTG
66 ATACACTCTG-TTTATA
**
61461862 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
61461879 TCGACCTGTA
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 4 0.05
81 81 0.95
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACACTCTGTTTATA
Found at i:61461931 original size:27 final size:28
Alignment explanation
Indices: 61461700--61461950 Score: 207
Period size: 27 Copynumber: 9.3 Consensus size: 28
61461690 TTAGTTTACC
* **
61461700 AAATTACCAAAATACCCT-TGGTTTACA
1 AAATTACCAAAATACCCTCTGATTTGTA
*
61461727 AAATTACTAAAATACCC-CT-AGTTTGTA
1 AAATTACCAAAATACCCTCTGA-TTTGTA
* * * * *
61461754 AGATTACTAAAATACACTTTG-TTTATA
1 AAATTACCAAAATACCCTCTGATTTGTA
*
61461781 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTCTGATTTGTA
*
61461808 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTCTGATTTGTA
*
61461835 AAATTACCAAAATA-CCTCTGATTTGTG
1 AAATTACCAAAATACCCTCTGATTTGTA
** **
61461862 AAATTACTGAAATACCCTC-GACCTGTA
1 AAATTACCAAAATACCCTCTGATTTGTA
* *** *
61461889 AAACTATTGAAATACCCTC-GACTTGTA
1 AAATTACCAAAATACCCTCTGATTTGTA
* *
61461916 AAATTACCAAAGTACCC-CTGATTTATA
1 AAATTACCAAAATACCCTCTGATTTGTA
*
61461943 GAATTACC
1 AAATTACC
61461951 GTTTTACCCT
Statistics
Matches: 185, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
26 5 0.03
27 175 0.95
28 5 0.03
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (28 bp):
AAATTACCAAAATACCCTCTGATTTGTA
Found at i:61461958 original size:27 final size:27
Alignment explanation
Indices: 61461931--61462200 Score: 290
Period size: 27 Copynumber: 10.0 Consensus size: 27
61461921 ACCAAAGTAC
*
61461931 CCCT-GATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
***
61461957 CCCTCGATTTACAGAATTATTATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
61461984 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
61462011 CCCTCAATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** *
61462038 CCCTCGATTTTTAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * **
61462065 CCCTTGATTAACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** * **
61462092 CCCTTAATTTACAAAATTATTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
61462119 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
61462146 CCCTCAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * * *
61462173 CCCTTGATTTATAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
61462200 C
1 C
61462201 TCCTAGGGTG
Statistics
Matches: 204, Mismatches: 39, Indels: 1
0.84 0.16 0.00
Matches are distributed among these distances:
26 4 0.02
27 200 0.98
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:61461959 original size:54 final size:54
Alignment explanation
Indices: 61461901--61462194 Score: 198
Period size: 54 Copynumber: 5.4 Consensus size: 54
61461891 ACTATTGAAA
*
61461901 TACCCTCGACTTGTA-A-AATTACCAAAGTACCC-CTGATTTATAGAATTACCGTTT
1 TACCCTCGA-TT-TACAGAATTACCAAAGTACCCTC-GATTTACAGAATTACCGTTT
** ***
61461955 TACCCTCGATTTACAGAATTATTATTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTT
* * ***** ** *
61462009 TACCCTCAATTTACAAAATTACTGTTTTACCCTCGATTTTTAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTT
* * * *** ** * **
61462063 TACCCTTGATTAACAGAATTACTATTTTACCCTTAATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTT
* ***** * *
61462117 TACCCTCGATTTACAAAATTACTGTTTTACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTT
* * *
61462171 TACCCTTGATTTATAAAATTACCA
1 TACCCTCGATTTACAGAATTACCA
61462195 TTTTACTCCT
Statistics
Matches: 200, Mismatches: 37, Indels: 6
0.82 0.15 0.02
Matches are distributed among these distances:
52 2 0.01
53 3 0.01
54 194 0.97
55 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTT
Found at i:61461986 original size:81 final size:81
Alignment explanation
Indices: 61461901--61462166 Score: 243
Period size: 81 Copynumber: 3.3 Consensus size: 81
61461891 ACTATTGAAA
* * *
61461901 TACCCTCGACTTGTA-A-AATTACCAAAGTACCC-CTGATTTATAGAATTACCGTTTTACCCTCG
1 TACCCTCGA-TT-TACAGAATTACCAAAGTACCCTC-AATTTACAAAATTACCGTTTTACCCTCG
*
61461963 ATTTACAGAATTATTATTT
63 ATTTACAGAATTATCATTT
**** *
61461982 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATT
** *
61462047 TTTAGAATTATCGTTT
66 TACAGAATTATCATTT
* * * *** * **
61462063 TACCCTTGATTAACAGAATTACTATTTTACCCTTAATTTACAAAATTATTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATT
* *
61462128 TACAAAATTA-CTGTTT
66 TACAGAATTATC-ATTT
* *
61462144 TACCCTCAATTTATAGAATTACC
1 TACCCTCGATTTACAGAATTACC
61462167 GTTTTACCCT
Statistics
Matches: 155, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
79 2 0.01
80 4 0.03
81 148 0.95
82 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATT
TACAGAATTATCATTT
Found at i:61462172 original size:81 final size:80
Alignment explanation
Indices: 61461944--61462192 Score: 336
Period size: 81 Copynumber: 3.1 Consensus size: 80
61461934 TGATTTATAG
* *
61461944 AATTACCGTTTTACCCTCGATTTACAGAATTATTATTTTACCCTCGATTTACAGAATTACCGTTT
1 AATTACTGTTTTACCCTCGATTTACAGAATTA-TGTTTTACCCTCGATTTACAGAATTACCGTTT
*
61462009 TACCCTCAATTTACAA
65 TACCCTTAATTTACAA
** * * **
61462025 AATTACTGTTTTACCCTCGATTTTTAGAATTATCGTTTTACCCTTGATTAACAGAATTACTATTT
1 AATTACTGTTTTACCCTCGATTTACAGAATTAT-GTTTTACCCTCGATTTACAGAATTACCGTTT
61462090 TACCCTTAATTTACAA
65 TACCCTTAATTTACAA
* * * *
61462106 AATTATTGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCAATTTATAGAATTACCGTTT
1 AATTACTGTTTTACCCTCGATTTACAGAATTA-TGTTTTACCCTCGATTTACAGAATTACCGTTT
* *
61462171 TACCCTTGATTTATAA
65 TACCCTTAATTTACAA
61462187 AATTAC
1 AATTAC
61462193 CATTTTACTC
Statistics
Matches: 144, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
80 1 0.01
81 142 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (80 bp):
AATTACTGTTTTACCCTCGATTTACAGAATTATGTTTTACCCTCGATTTACAGAATTACCGTTTT
ACCCTTAATTTACAA
Found at i:61462199 original size:54 final size:54
Alignment explanation
Indices: 61461936--61462200 Score: 341
Period size: 54 Copynumber: 4.9 Consensus size: 54
61461926 AGTACCCCTG
* * *
61461936 ATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATTATTTTACCCTCG
1 ATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCA
* * * *
61461990 ATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACTGTTTTACCCTCG
1 ATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCA
* * * * * *
61462044 ATTTTTAGAATTATCGTTTTACCCTTGATTAACAGAATTACTATTTTACCCTTA
1 ATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCA
* * ** *
61462098 ATTTACAAAATTATTGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCA
1 ATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCA
* * *
61462152 ATTTATAGAATTACCGTTTTACCCTTGATTTATAAAATTACCATTTTAC
1 ATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTAC
61462201 TCCTAGGGTG
Statistics
Matches: 179, Mismatches: 32, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 179 1.00
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (54 bp):
ATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCA
Done.