Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 187 of 352
Found at i:61462224 original size:81 final size:78
Alignment explanation
Indices: 61461944--61462230 Score: 268
Period size: 81 Copynumber: 3.5 Consensus size: 78
61461934 TGATTTATAG
* * *
61461944 AATTACCGTTTTACCCTCGATTTACAGAATTATTATTTTACCCTCGATTTACAGAATTACCGTTT
1 AATTACTGTTTTACCCTGGATTT--A-AATTATTGTTTTACCCTCGATTTACAGAATTACCGTTT
*
61462009 TACCCTCAATTTACAA
63 TACCCTTAATTTACAA
* * * * **
61462025 AATTACTGTTTTACCCTCGATTTTTAGAATTATCGTTTTACCCTTGATTAACAGAATTACTATTT
1 AATTACTGTTTTACCCTGGA--TTTA-AATTATTGTTTTACCCTCGATTTACAGAATTACCGTTT
61462090 TACCCTTAATTTACAA
63 TACCCTTAATTTACAA
* * * * *
61462106 AATTATTGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCAATTTATAGAATTACCGTTT
1 AATTACTGTTTTACCCTGGATTT---AAATTATTGTTTTACCCTCGATTTACAGAATTACCGTTT
* *
61462171 TACCCTTGATTTATAA
63 TACCCTTAATTTACAA
** * * *
61462187 AATTACCATTTTACTCCTAGGGTGTTAAATGATTGTTTTGCCCT
1 AATTACTGTTTTAC-CCT-GGAT-TTAAATTATTGTTTTACCCT
61462231 TGTGGGCAAG
Statistics
Matches: 171, Mismatches: 27, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
79 3 0.02
81 157 0.92
82 4 0.02
83 5 0.03
84 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.43
Consensus pattern (78 bp):
AATTACTGTTTTACCCTGGATTTAAATTATTGTTTTACCCTCGATTTACAGAATTACCGTTTTAC
CCTTAATTTACAA
Found at i:61462738 original size:25 final size:25
Alignment explanation
Indices: 61462710--61462774 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
61462700 CATTCACATT
*
61462710 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTTTGATTCTGTCACCTGATA
*
61462735 CTGATTTTGATTCTGTCACCTGATT
1 CTGATTTTGATTCTGTCACCTGATA
*
61462760 CTGATTCTGATTCTG
1 CTGATTTTGATTCTG
61462775 ATTCTAGTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.48
Consensus pattern (25 bp):
CTGATTTTGATTCTGTCACCTGATA
Found at i:61462763 original size:6 final size:6
Alignment explanation
Indices: 61462707--61462788 Score: 62
Period size: 6 Copynumber: 13.3 Consensus size: 6
61462697 TTGCATTCAC
* * * *
61462707 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
61462757 ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
61462789 AATGTTTCTT
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
5 4 0.07
6 47 0.78
7 7 0.12
8 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:61466988 original size:23 final size:24
Alignment explanation
Indices: 61466962--61467014 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
61466952 AGCCCAGATA
* *
61466962 AGCTTACCGATA-GGCTCTTTATG
1 AGCTTACCGAAATGGCTCTGTATG
* *
61466985 AGCTTCCCGAAATGGCTCTGTGTG
1 AGCTTACCGAAATGGCTCTGTATG
61467009 AGCTTA
1 AGCTTA
61467015 TCGCTACAAG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 10 0.42
24 14 0.58
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.32
Consensus pattern (24 bp):
AGCTTACCGAAATGGCTCTGTATG
Found at i:61476218 original size:39 final size:40
Alignment explanation
Indices: 61476080--61476333 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
61476070 AAGCCAAGTA
* * * * *
61476080 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
61476119 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
61476159 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
61476199 CCTT-GGGACTTAGCCCGGATATAGTAACT-GCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
61476237 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
61476277 CCTTC--GACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
61476315 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
61476334 TTATCATCCA
Statistics
Matches: 197, Mismatches: 11, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
37 1 0.01
38 46 0.23
39 62 0.31
40 88 0.45
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:61476256 original size:78 final size:79
Alignment explanation
Indices: 61476080--61476333 Score: 347
Period size: 78 Copynumber: 3.2 Consensus size: 79
61476070 AAGCCAAGTA
* * * * * *
61476080 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATGCCTTCGGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTT-GGGACTTAGCCCGGATATA
* *
61476143 GTAACTCGCACCAATG
64 GTAACTAGCACAAATG
61476159 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTGGGACTTAGCCCGGATATAGT
61476224 AACT-GCACAAATG
66 AACTAGCACAAATG
*
61476237 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT-CGACTTAGCCCGGA-ACTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTGGGACTTAGCCCGGATA-TAG
* *
61476300 TCACTAGCGCAAATG
65 TAACTAGCACAAATG
61476315 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
61476334 TTATCATCCA
Statistics
Matches: 161, Mismatches: 10, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
76 1 0.01
77 20 0.12
78 79 0.49
79 37 0.23
80 24 0.15
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTGGGACTTAGCCCGGATATAGT
AACTAGCACAAATG
Found at i:61484240 original size:40 final size:40
Alignment explanation
Indices: 61484196--61484378 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
61484186 TACTTGCTCG
* *
61484196 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* *
61484236 AATGCCTTCAGAACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
61484276 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * * *
61484316 AATGCCTTCGGGACTTAGCCCGGA-ACCAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
61484356 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
61484379 TTATCATCCA
Statistics
Matches: 132, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 131 0.99
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:61494199 original size:47 final size:47
Alignment explanation
Indices: 61494136--61494434 Score: 436
Period size: 47 Copynumber: 6.3 Consensus size: 47
61494126 CCCTTCGGGA
* * *
61494136 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
61494183 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
61494230 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
** * *
61494277 CTTATCACATATATACACTTTCACATTCATCAGGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
61494324 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
61494371 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
*
61494420 CCTATCACATATATA
1 CTTATCACATATATA
61494435 TATACTTGTA
Statistics
Matches: 233, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
47 188 0.81
49 45 0.19
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:61518058 original size:40 final size:40
Alignment explanation
Indices: 61517981--61518075 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
61517971 AAACCAAGTA
* * *
61517981 CCTTCGGGATTTAG-CCGGATATAGCTACCTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCTAACTGCACAAATG
*
61518020 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCTAACT-GCACAAATG
61518060 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
61518076 TGCCTTCGGG
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
39 17 0.34
40 33 0.66
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCTAACTGCACAAATG
Found at i:61518081 original size:18 final size:18
Alignment explanation
Indices: 61518058--61518093 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
61518048 CTCGCACAAA
61518058 TGCCTTCGGGACTTAGCC
1 TGCCTTCGGGACTTAGCC
61518076 TGCCTTCGGGACTTAGCC
1 TGCCTTCGGGACTTAGCC
61518094 CGGATATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.33, G:0.28, T:0.28
Consensus pattern (18 bp):
TGCCTTCGGGACTTAGCC
Found at i:61518108 original size:58 final size:58
Alignment explanation
Indices: 61518018--61518133 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
61518008 CCTGCTCAAA
*
61518018 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
61518076 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGGCTTAGCC
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
61518134 CAGAATTAGT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.25
Consensus pattern (58 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:61518131 original size:40 final size:40
Alignment explanation
Indices: 61518076--61518176 Score: 150
Period size: 40 Copynumber: 2.5 Consensus size: 40
61518066 GGACTTAGCC
* *
61518076 TGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAA
1 TGCCTTCGGGGCTTAGCCCGGAAT-TAGTAACTAGCACAAA
* *
61518116 TGCCTTCGGGGCTTAGCCCAGAATTAGTCACTAGCACAAA
1 TGCCTTCGGGGCTTAGCCCGGAATTAGTAACTAGCACAAA
61518156 TGCCTTCGGGGCTTAGCCCGG
1 TGCCTTCGGGGCTTAGCCCGG
61518177 TTATCATCCG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 53 0.96
41 2 0.04
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.23
Consensus pattern (40 bp):
TGCCTTCGGGGCTTAGCCCGGAATTAGTAACTAGCACAAA
Found at i:61518153 original size:98 final size:97
Alignment explanation
Indices: 61517981--61518173 Score: 264
Period size: 98 Copynumber: 2.0 Consensus size: 97
61517971 AAACCAAGTA
* * * **
61517981 CCTTCGGGATTTAGCCGGATATAGCTACCTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 CCTTCGGGACTTAGCCGGATATAGCTAACTGCACAAATGCCTTCGGGACTTAGCCCGAATATAGT
*
61518046 AACTCGCACAAATGCCTTCGGGACTTAGCCTG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCTG
*
61518078 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGGCTTAGCCCAGAAT-T
1 CCTTCGGGACTTAG-CCGGATATAGCTAACT-GCACAAATGCCTTCGGGACTTAGCCC-GAATAT
* *
61518141 AGTCACTAGCACAAATGCCTTCGGGGCTTAGCC
63 AGTAACTAGCACAAATGCCTTCGGGACTTAGCC
61518174 CGGTTATCAT
Statistics
Matches: 84, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
97 17 0.20
98 65 0.77
99 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (97 bp):
CCTTCGGGACTTAGCCGGATATAGCTAACTGCACAAATGCCTTCGGGACTTAGCCCGAATATAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCTG
Found at i:61530037 original size:22 final size:22
Alignment explanation
Indices: 61530005--61530047 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
61529995 TATTTACCAT
61530005 TTTAATCCATTAAATCATAATTC
1 TTTAATCCATTAAAT-ATAATTC
*
61530028 TTTAA-CCATTTAATATAATT
1 TTTAATCCATTAAATATAATT
61530048 AAACTAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.47
Consensus pattern (22 bp):
TTTAATCCATTAAATATAATTC
Found at i:61530040 original size:23 final size:21
Alignment explanation
Indices: 61530005--61530047 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
61529995 TATTTACCAT
61530005 TTTAATCCATTAAATCATAATTC
1 TTTAATCCATT-AAT-ATAATTC
61530028 TTTAA-CCATTTAATATAATT
1 TTTAATCCA-TTAATATAATT
61530048 AAACTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 6 0.32
22 6 0.32
23 7 0.37
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.47
Consensus pattern (21 bp):
TTTAATCCATTAATATAATTC
Found at i:61537829 original size:48 final size:48
Alignment explanation
Indices: 61537754--61537933 Score: 183
Period size: 48 Copynumber: 3.9 Consensus size: 48
61537744 CACATGGTAG
* ** * *
61537754 GATGCCAATGCCATATCCTGGATATGGTCTTACATTGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
*
61537802 GATGCCAATTCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * ** *
61537850 GATGCCGAT---A-G-CCCAG-CTATGATCTTACACGAAATTACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
* *
61537893 GATGCCAAAGCCATGTCTCAGACATGGTCTTACATGGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
61537934 GTACATAACC
Statistics
Matches: 105, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
42 1 0.01
43 32 0.30
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 67 0.64
49 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:61548782 original size:48 final size:48
Alignment explanation
Indices: 61548700--61548975 Score: 260
Period size: 48 Copynumber: 5.9 Consensus size: 48
61548690 TACATGGTAG
* * * * *
61548700 GATGACAATGCCATATCCTAGATATGCTCATACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
** **
61548748 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCGTAGGTC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * ** **
61548796 GATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGATCGTAGGTC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * *
61548844 GATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGGTCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * ** *
61548892 GATGCC---G--ATAGCCTAG-CTATGGTCTTACATGAAATTACATATC
1 GATGCCAATGCCATATCCCAGAC-ATGGTCTTACATGGGATCACATATC
* * *
61548935 GATGCCAAAG-CATGTCCCAGACATGGTCTTACATGGCATCA
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCA
61548976 TACATAACCC
Statistics
Matches: 192, Mismatches: 30, Indels: 13
0.82 0.13 0.06
Matches are distributed among these distances:
42 1 0.01
43 32 0.17
45 1 0.01
46 1 0.01
47 22 0.11
48 135 0.70
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:61550349 original size:14 final size:14
Alignment explanation
Indices: 61550330--61550357 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
61550320 TCCTCGTTAT
61550330 TTTCAACCATCATG
1 TTTCAACCATCATG
61550344 TTTCAACCATCATG
1 TTTCAACCATCATG
61550358 GTTTAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.36
Consensus pattern (14 bp):
TTTCAACCATCATG
Found at i:61555076 original size:15 final size:15
Alignment explanation
Indices: 61555056--61555088 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
61555046 GAGCTATTTG
61555056 AGTAAAATAAAGAAA
1 AGTAAAATAAAGAAA
61555071 AGTAAAATAAAGAAA
1 AGTAAAATAAAGAAA
61555086 AGT
1 AGT
61555089 TGTCATCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (15 bp):
AGTAAAATAAAGAAA
Found at i:61558801 original size:14 final size:14
Alignment explanation
Indices: 61558784--61558810 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
61558774 AAGAGTTTTG
61558784 TATATTATATAGAA
1 TATATTATATAGAA
61558798 TATATTATATAGA
1 TATATTATATAGA
61558811 TAAGATATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (14 bp):
TATATTATATAGAA
Found at i:61570980 original size:17 final size:19
Alignment explanation
Indices: 61570958--61571003 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
61570948 ACATACATAC
61570958 AATAAT-ATTTT-TCTAAT
1 AATAATAATTTTATCTAAT
*
61570975 AATAATAATTTTATCTCAT
1 AATAATAATTTTATCTAAT
*
61570994 AATACTAATT
1 AATAATAATT
61571004 AAAATTTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 14 0.56
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (19 bp):
AATAATAATTTTATCTAAT
Found at i:61576688 original size:48 final size:50
Alignment explanation
Indices: 61576631--61576730 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 50
61576621 TGTCTCGACA
*
61576631 TGGTCTTACATGGTATCC-TTGCCTTAT-G-AACTCACCAATGCCATGCCT
1 TGGTCTTACATGGGA-CCTTTGCCTTATAGAAACTCACCAATGCCATGCCT
* * *
61576679 TGGTCTTACATGGGACCTTTGCCTTATAGAAACTTATCAATGCCATGTCT
1 TGGTCTTACATGGGACCTTTGCCTTATAGAAACTCACCAATGCCATGCCT
61576729 TG
1 TG
61576731 ACATGGTCTT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
47 2 0.04
48 23 0.51
49 1 0.02
50 19 0.42
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (50 bp):
TGGTCTTACATGGGACCTTTGCCTTATAGAAACTCACCAATGCCATGCCT
Found at i:61576791 original size:55 final size:53
Alignment explanation
Indices: 61576604--61576807 Score: 143
Period size: 55 Copynumber: 3.9 Consensus size: 53
61576594 GTATCCTTTT
* * * * * **
61576604 GAAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTA
1 GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTCGCCCCA
* ** * **
61576657 TG-AACTCACCAATGCCATGCC-T----TGGTCTTACATGGGA-CCTTTGCCTTATA
1 -GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TCGCC--CCA
* *
61576707 GAAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTCGCCCCA
1 GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTCGCCCCA
* * *
61576760 GAAACCTTACCAATTGTCATGCCTTGGCATGGTCTTACATGGTATCCT
1 GAAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGATATCCT
61576808 TAAACCCTAA
Statistics
Matches: 119, Mismatches: 19, Indels: 23
0.74 0.12 0.14
Matches are distributed among these distances:
47 2 0.02
48 19 0.16
49 1 0.01
50 18 0.15
51 1 0.01
53 21 0.18
54 8 0.07
55 47 0.39
56 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (53 bp):
GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTCGCCCCA
Found at i:61584376 original size:53 final size:54
Alignment explanation
Indices: 61584287--61584503 Score: 233
Period size: 55 Copynumber: 4.0 Consensus size: 54
61584277 TTATGTGGTA
* * * * *
61584287 TCCTTTTGAAACTTACCATTGCCATGTCTCGACATGGTCCTACATGGTATCCTT
1 TCCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
* * * *
61584341 TCCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTTTTACATGGGAT-CTT
1 TCCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
** *
61584393 TGCCTTATAGAAACTTATGAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
1 T-CCTTAT-GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
* * * *
61584449 GCCTTA-GAAACCTTACCAATTACCATGCCTTGGCTTGGTCTTACATGGTATCCTT
1 TCCTTATGAAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
61584504 AAACCCTAAT
Statistics
Matches: 134, Mismatches: 23, Indels: 11
0.80 0.14 0.07
Matches are distributed among these distances:
52 4 0.03
53 43 0.32
54 14 0.10
55 70 0.52
56 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
TCCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
Found at i:61584501 original size:55 final size:53
Alignment explanation
Indices: 61584249--61584503 Score: 232
Period size: 55 Copynumber: 4.8 Consensus size: 53
61584239 ACATGGGTAC
* * * * **
61584249 CTTACCATTGCGATGACTTGTCATGGTCTTATGTGGTATCCTT---TT-GAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * * * * *
61584298 CTTACCATTGCCATGTCTCGACATGGTCCTACATGGTATCCTTTCCTTATG-AA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * *
61584351 CTCACCAATGCCATGCCTTGGCATGGTTTTACATGGGATCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCC-T-TAGAAA
** * *
61584406 CTTATGAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
61584459 CCTTACCAATTACCATGCCTTGGCTTGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
61584504 AAACCCTAAT
Statistics
Matches: 165, Mismatches: 31, Indels: 14
0.79 0.15 0.07
Matches are distributed among these distances:
49 36 0.22
52 2 0.01
53 44 0.27
54 10 0.06
55 73 0.44
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:61586417 original size:27 final size:26
Alignment explanation
Indices: 61586357--61586419 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
61586347 CATGGCTGCT
* *
61586357 AGAACAGATAATGTGACCGAGTCACC
1 AGAACAGATAATGTGACCAAGCCACC
61586383 AGAACAGATAATCGTG-CCAAAGCCACC
1 AGAACAGATAAT-GTGACC-AAGCCACC
*
61586410 GGAACAGATA
1 AGAACAGATA
61586420 TATGCGGCAG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 14 0.44
27 18 0.56
ACGTcount: A:0.41, C:0.24, G:0.22, T:0.13
Consensus pattern (26 bp):
AGAACAGATAATGTGACCAAGCCACC
Found at i:61587906 original size:24 final size:24
Alignment explanation
Indices: 61587876--61587956 Score: 110
Period size: 24 Copynumber: 3.4 Consensus size: 24
61587866 CCAACACTGT
61587876 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCTAAATCC
* * **
61587900 TTTCCCTTATCAGCTTTTAAATCC
1 TCTCCCTAATCAGCTCCTAAATCC
*
61587924 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCTAAATCC
61587948 TCT-CCTAAT
1 TCTCCCTAAT
61587957 AGACTTTCAC
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
23 5 0.10
24 44 0.90
ACGTcount: A:0.22, C:0.37, G:0.04, T:0.37
Consensus pattern (24 bp):
TCTCCCTAATCAGCTCCTAAATCC
Found at i:61594233 original size:27 final size:26
Alignment explanation
Indices: 61594175--61594285 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 26
61594165 AGCATGGCTG
* **
61594175 CCAGAATAGATAATGTGACAGAGTTA
1 CCAGAATAGATAATGTGGCAGAGCCA
61594201 CCAGAATAGATAATCGTGGCAGAGCCA
1 CCAGAATAGATAAT-GTGGCAGAGCCA
* *
61594228 CTAGAACAGATATATGTGGCAGAGCCA
1 CCAGAATAGATA-ATGTGGCAGAGCCA
* * *
61594255 CCAG-ATCAAATAATTATGGCATAGCCA
1 CCAGAAT-AGATAA-TGTGGCAGAGCCA
61594282 CCAG
1 CCAG
61594286 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 16 0.23
27 53 0.75
28 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAATAGATAATGTGGCAGAGCCA
Found at i:61595715 original size:24 final size:24
Alignment explanation
Indices: 61595680--61595756 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
61595670 CCAACACTGT
*
61595680 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
61595704 TTTCCCTTATCAGCTCTTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
61595728 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
61595752 TCTCC
1 TCTCC
61595757 TAACAGACTT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.21, C:0.40, G:0.04, T:0.35
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:61601159 original size:27 final size:27
Alignment explanation
Indices: 61601119--61601234 Score: 155
Period size: 27 Copynumber: 4.3 Consensus size: 27
61601109 CGGATAAGTT
*
61601119 GTAGAATTACTGAAATACCCCTGT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
* *
61601145 GTCAGAATTACTGAAAT-CCCCTATAAG
1 GT-AGAATTACCGAAATACCCCTGTAAG
61601172 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * *
61601199 GTAGAATTGCCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
61601226 GTAGAATTA
1 GTAGAATTA
61601235 TCGAGATCCC
Statistics
Matches: 80, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 21 0.26
27 59 0.74
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:61601194 original size:53 final size:53
Alignment explanation
Indices: 61601119--61601264 Score: 161
Period size: 53 Copynumber: 2.7 Consensus size: 53
61601109 CGGATAAGTT
* **
61601119 GTAGAATTACTGAAATACCCCTGTAGGTCAGAATTACTGAAAT-CCCCTATAAG
1 GTAGAATTACCGAAATACCCCTGTAGGT-AGAATTACCAAAATACCCCTATAAG
* * *
61601172 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTGCCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGT-AGGTAGAATTACCAAAATACCCCTATAAG
* * *
61601226 GTAGAATTATCGAGAT-CCCCTTGTAGAGTAAAATTACCA
1 GTAGAATTACCGAAATACCCC-TGTAG-GTAGAATTACCA
61601265 TTTTGCCCTT
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
53 40 0.51
54 39 0.49
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (53 bp):
GTAGAATTACCGAAATACCCCTGTAGGTAGAATTACCAAAATACCCCTATAAG
Found at i:61601250 original size:27 final size:27
Alignment explanation
Indices: 61601119--61601263 Score: 152
Period size: 27 Copynumber: 5.4 Consensus size: 27
61601109 CGGATAAGTT
*
61601119 GTAGAATTACTGAAATACCCCTGTA-G
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
61601145 GTCAGAATTACTGAAAT-CCCCTATAAG
1 GT-AGAATTACCGAAATACCCCTGTAGG
*
61601172 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
61601199 GTAGAATTGCCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
61601226 GTAGAATTATCGAGAT-CCCCTTGTAGA
1 GTAGAATTACCGAAATACCCC-TGTAGG
*
61601253 GTAAAATTACC
1 GTAGAATTACC
61601264 ATTTTGCCCT
Statistics
Matches: 102, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
26 26 0.25
27 76 0.75
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:61602031 original size:33 final size:32
Alignment explanation
Indices: 61601982--61602045 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
61601972 CTTGCTGCAA
* *
61601982 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
61602015 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
61602046 GTGACTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:61602059 original size:27 final size:26
Alignment explanation
Indices: 61602007--61602066 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
61601997 ACATATATAT
*
61602007 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
61602033 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
61602060 ATATCTG
1 ATATCTG
61602067 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:61608830 original size:18 final size:19
Alignment explanation
Indices: 61608799--61608835 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
61608789 AAATTTAGTG
*
61608799 AATTAATTGAATTATGGTA
1 AATTAAATGAATTATGGTA
61608818 AATTAAATG-ATTATGGTA
1 AATTAAATGAATTATGGTA
61608836 CCAAGTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.16, T:0.41
Consensus pattern (19 bp):
AATTAAATGAATTATGGTA
Found at i:61609393 original size:64 final size:63
Alignment explanation
Indices: 61609238--61609403 Score: 174
Period size: 64 Copynumber: 2.6 Consensus size: 63
61609228 ATTATGATGT
* * * *
61609238 AGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAACTACAGGATATATG
1 AGCTAGGTCGCATGGGTGGTACTAAGTGAACACCATGTAGACAAGAGAACTACAGGATAAATG
* * * * *
61609301 TAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACATGTAGACAAGAGAGCTAC-GAGATAAA
1 -AGCTAGGTCGCATGGGTGGTACTAAGTGAA-CAC-CATGTAGACAAGAGAACTACAG-GATAAA
61609365 TG
62 TG
* **
61609367 -GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 AGCTAGGTCGCATGGGTGGTACTAAGTGAACACCATGT
61609404 GTAAAAGAGA
Statistics
Matches: 83, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
62 5 0.06
63 2 0.02
64 47 0.57
65 3 0.04
66 26 0.31
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (63 bp):
AGCTAGGTCGCATGGGTGGTACTAAGTGAACACCATGTAGACAAGAGAACTACAGGATAAATG
Found at i:61615995 original size:46 final size:47
Alignment explanation
Indices: 61615945--61616057 Score: 142
Period size: 46 Copynumber: 2.4 Consensus size: 47
61615935 TCGATGCTTA
* * *
61615945 TCCCAGACATGTCTTACACT-G-GCTTACGTCTCGAGGCCAAT-ACATG
1 TCCCAGACATGTCTTACACTAGCACTT-C-TCTCAAAGCCAATGACATG
*
61615991 TCCCAGACATGTCTTACACTAGCACTTCTCTCAAAGCCAATGCCATG
1 TCCCAGACATGTCTTACACTAGCACTTCTCTCAAAGCCAATGACATG
61616038 TCCCAGACATGGTCTTACAC
1 TCCCAGACAT-GTCTTACAC
61616058 AAGCTCTCAT
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
46 31 0.53
47 16 0.27
48 12 0.20
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.26
Consensus pattern (47 bp):
TCCCAGACATGTCTTACACTAGCACTTCTCTCAAAGCCAATGACATG
Found at i:61624750 original size:24 final size:24
Alignment explanation
Indices: 61624704--61624750 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
61624694 GTCCTACCCA
* *
61624704 TCCAGCCTCTACACTCCATCTCCG
1 TCCAACCTCTACACTCCAACTCCG
61624728 TCCAACCT-TACACTCCACACTCC
1 TCCAACCTCTACACTCCA-ACTCC
61624751 ATGTGGGGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.21, C:0.51, G:0.04, T:0.23
Consensus pattern (24 bp):
TCCAACCTCTACACTCCAACTCCG
Found at i:61625291 original size:27 final size:27
Alignment explanation
Indices: 61625020--61625280 Score: 351
Period size: 27 Copynumber: 9.7 Consensus size: 27
61625010 ATCACATAGA
*
61625020 GGCAAAACAGTCATCTTACCATATAAG
1 GGCAAAACAGTCATTTTACCATATAAG
* *
61625047 GGAAAAATAGTCATTTTACCATATAAG
1 GGCAAAACAGTCATTTTACCATATAAG
* *
61625074 GGCAAAACAGTCATTTTACGACATAAG
1 GGCAAAACAGTCATTTTACCATATAAG
* * *
61625101 GGAAAAACAATCATCTTACCATATAAG
1 GGCAAAACAGTCATTTTACCATATAAG
* * *
61625128 GGAAAAATAGTCATTTTACCACATAAG
1 GGCAAAACAGTCATTTTACCATATAAG
* * *
61625155 GGCAAAACAATCATTTTACGACATAAG
1 GGCAAAACAGTCATTTTACCATATAAG
*
61625182 GGCAAAACAGTCATCTTACCATATAAG
1 GGCAAAACAGTCATTTTACCATATAAG
*
61625209 GGCAAAATAGTCATTTTACCATATAAG
1 GGCAAAACAGTCATTTTACCATATAAG
**
61625236 GGCAAAACAGTCATTTTACCGCATAAG
1 GGCAAAACAGTCATTTTACCATATAAG
*
61625263 GGCAAAATAGTCATTTTA
1 GGCAAAACAGTCATTTTA
61625281 TCGATTAAGG
Statistics
Matches: 204, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 204 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (27 bp):
GGCAAAACAGTCATTTTACCATATAAG
Found at i:61625291 original size:81 final size:81
Alignment explanation
Indices: 61625020--61625276 Score: 444
Period size: 81 Copynumber: 3.2 Consensus size: 81
61625010 ATCACATAGA
61625020 GGCAAAACAGTCATCTTACCATATAAGGGAAAAATAGTCATTTTACCATATAAGGGCAAAACAGT
1 GGCAAAACAGTCATCTTACCATATAAGGGAAAAATAGTCATTTTACCATATAAGGGCAAAACAGT
61625085 CATTTTACGACATAAG
66 CATTTTACGACATAAG
* * * *
61625101 GGAAAAACAATCATCTTACCATATAAGGGAAAAATAGTCATTTTACCACATAAGGGCAAAACAAT
1 GGCAAAACAGTCATCTTACCATATAAGGGAAAAATAGTCATTTTACCATATAAGGGCAAAACAGT
61625166 CATTTTACGACATAAG
66 CATTTTACGACATAAG
*
61625182 GGCAAAACAGTCATCTTACCATATAAGGGCAAAATAGTCATTTTACCATATAAGGGCAAAACAGT
1 GGCAAAACAGTCATCTTACCATATAAGGGAAAAATAGTCATTTTACCATATAAGGGCAAAACAGT
61625247 CATTTTACCG-CATAAG
66 CATTTTA-CGACATAAG
*
61625263 GGCAAAATAGTCAT
1 GGCAAAACAGTCAT
61625277 TTTATCGATT
Statistics
Matches: 165, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
81 163 0.99
82 2 0.01
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (81 bp):
GGCAAAACAGTCATCTTACCATATAAGGGAAAAATAGTCATTTTACCATATAAGGGCAAAACAGT
CATTTTACGACATAAG
Found at i:61628905 original size:26 final size:27
Alignment explanation
Indices: 61628851--61628911 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 27
61628841 TGTGCCAGTC
**
61628851 ATTTTACACTACAAGGGCATTTCGGTA
1 ATTTTACACTACAAGGGCATTTCAATA
*
61628878 ATTTTACACTACAA-GGTATTTCAATA
1 ATTTTACACTACAAGGGCATTTCAATA
61628904 ATTTTACA
1 ATTTTACA
61628912 AATCGGGGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 17 0.55
27 14 0.45
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGCATTTCAATA
Found at i:61628940 original size:27 final size:27
Alignment explanation
Indices: 61628902--61629255 Score: 401
Period size: 27 Copynumber: 13.2 Consensus size: 27
61628892 GGTATTTCAA
* *
61628902 TAATTTTACAAATCGGGGGTGTTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* *
61628929 TAATTTTACAAATTGAGGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* *
61628956 TAATTCTACAAATCGAGGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* * *
61628983 TAATTTTACAAATTGAGGGTATTTCGA
1 TAATTTTACAAATCGAGGGTATTTTGG
* * * *
61629010 TAATTTTACAAATTGAGGGTGTTTCGA
1 TAATTTTACAAATCGAGGGTATTTTGG
* * *
61629037 TAATTTTACAATTTGAGGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTTGG
* * *
61629064 TAATTTTAAAAATCAAGGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTTGG
*
61629091 TAA-TTT-CATAATCGAGGGTATTTTCG
1 TAATTTTACA-AATCGAGGGTATTTTGG
**
61629117 TAATTTTACAAATCGAGGGTATTTTAA
1 TAATTTTACAAATCGAGGGTATTTTGG
* *
61629144 TAATTTCAC-AATCGAGGGTATTTTGA
1 TAATTTTACAAATCGAGGGTATTTTGG
* *
61629170 TAATTTTAAAAATCGAGGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTTGG
* *
61629197 TAATTTCAC-AATCGAGGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTTGG
**
61629223 TAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTTGG
61629250 TAATTT
1 TAATTT
61629256 CTCTTTATTA
Statistics
Matches: 286, Mismatches: 36, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
25 1 0.00
26 67 0.23
27 216 0.76
28 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTTGG
Found at i:61629256 original size:53 final size:53
Alignment explanation
Indices: 61628892--61629256 Score: 419
Period size: 53 Copynumber: 6.8 Consensus size: 53
61628882 TACACTACAA
** * * * * *
61628892 GGTATTTCAATAATTTTACAAATCGGGGGTGTTTTGGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATCGAG
* ** * *
61628946 GGTATTTCGGTAATTCTACAAATCGAGGGTATTTCGGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATCGAG
* * * * * *
61629000 GGTATTTCGATAATTTTACAAATTGAGGGT-GTTTCGATAATTTTACAATTTGAG
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAG-TAATTTCACAA-TCGAG
** * * *
61629054 GGTATTTTAGTAATTTTAAAAATCAAGGGTATTTTAGTAATTTCATAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAATCGAG
*
61629107 GGTATTTTC-GTAATTTTACAAATCGAGGGTATTTTAATAATTTCACAATCGAG
1 GGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAATCGAG
* * *
61629160 GGTATTTTGATAATTTTAAAAATCGAGGGTATTTTAGTAATTTCACAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAATCGAG
*
61629213 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTC
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTC
61629257 TCTTTATTAT
Statistics
Matches: 270, Mismatches: 36, Indels: 11
0.85 0.11 0.03
Matches are distributed among these distances:
52 3 0.01
53 138 0.51
54 125 0.46
55 4 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (53 bp):
GGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAATCGAG
Found at i:61629620 original size:28 final size:28
Alignment explanation
Indices: 61629554--61629634 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 28
61629544 AAACACACTT
* * *
61629554 ATTCATTTGGCCAATTTAGGCCCAATCTC
1 ATTCATATGGCCCA-TTAGGCCCAATCAC
* * *
61629583 GTTGACATGGCCCATTAGGCCCAATCAC
1 ATTCATATGGCCCATTAGGCCCAATCAC
* *
61629611 ATTCATATGGCCCATCAAGCCCAA
1 ATTCATATGGCCCATTAGGCCCAA
61629635 CTAATTCCCA
Statistics
Matches: 41, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
28 32 0.78
29 9 0.22
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (28 bp):
ATTCATATGGCCCATTAGGCCCAATCAC
Found at i:61631812 original size:27 final size:27
Alignment explanation
Indices: 61631772--61631951 Score: 207
Period size: 27 Copynumber: 6.7 Consensus size: 27
61631762 ATCACATAGG
* *
61631772 GGCAAAACAATCATTTTACCATATAAG
1 GGCAAAACAGTCATTTTACCATATAAA
* *
61631799 GGTAAAATAGTCATTTTACCATATAAA
1 GGCAAAACAGTCATTTTACCATATAAA
* * *
61631826 GGCAAAACAATCATTTTACCACATAAT
1 GGCAAAACAGTCATTTTACCATATAAA
* *
61631853 GGCAAAACGGTCATCTTACCATATAAA
1 GGCAAAACAGTCATTTTACCATATAAA
* * *
61631880 GGCAAAATAGTCATTTTACTATATAAG
1 GGCAAAACAGTCATTTTACCATATAAA
* *
61631907 GGCAAAACAGTCATTTTACCACATAAC
1 GGCAAAACAGTCATTTTACCATATAAA
* * *
61631934 GACAAAATAATCATTTTA
1 GGCAAAACAGTCATTTTA
61631952 TTGATTAAGG
Statistics
Matches: 127, Mismatches: 26, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28
Consensus pattern (27 bp):
GGCAAAACAGTCATTTTACCATATAAA
Found at i:61631834 original size:54 final size:54
Alignment explanation
Indices: 61631772--61631951 Score: 243
Period size: 54 Copynumber: 3.3 Consensus size: 54
61631762 ATCACATAGG
* *
61631772 GGCAAAACAATCATTTTACCATATAAGGGTAAAATAGTCATTTTACCATATAAA
1 GGCAAAACAATCATTTTACCATATAAGGGCAAAACAGTCATTTTACCATATAAA
* * * *
61631826 GGCAAAACAATCATTTTACCACATAATGGCAAAACGGTCATCTTACCATATAAA
1 GGCAAAACAATCATTTTACCATATAAGGGCAAAACAGTCATTTTACCATATAAA
* * * * *
61631880 GGCAAAATAGTCATTTTACTATATAAGGGCAAAACAGTCATTTTACCACATAAC
1 GGCAAAACAATCATTTTACCATATAAGGGCAAAACAGTCATTTTACCATATAAA
* *
61631934 GACAAAATAATCATTTTA
1 GGCAAAACAATCATTTTA
61631952 TTGATTAAGG
Statistics
Matches: 109, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 109 1.00
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28
Consensus pattern (54 bp):
GGCAAAACAATCATTTTACCATATAAGGGCAAAACAGTCATTTTACCATATAAA
Found at i:61631904 original size:81 final size:81
Alignment explanation
Indices: 61631772--61631947 Score: 253
Period size: 81 Copynumber: 2.2 Consensus size: 81
61631762 ATCACATAGG
* * *
61631772 GGCAAAACAATCATTTTACCATATAAGGGTAAAATAGTCATTTTACCATATAAAGGCAAAACAAT
1 GGCAAAACAATCATCTTACCATATAAAGGCAAAATAGTCATTTTACCATATAAAGGCAAAACAAT
61631837 CATTTTACCACATAAT
66 CATTTTACCACATAAT
** * * *
61631853 GGCAAAACGGTCATCTTACCATATAAAGGCAAAATAGTCATTTTACTATATAAGGGCAAAACAGT
1 GGCAAAACAATCATCTTACCATATAAAGGCAAAATAGTCATTTTACCATATAAAGGCAAAACAAT
*
61631918 CATTTTACCACATAAC
66 CATTTTACCACATAAT
* *
61631934 GACAAAATAATCAT
1 GGCAAAACAATCAT
61631948 TTTATTGATT
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.44, C:0.18, G:0.11, T:0.27
Consensus pattern (81 bp):
GGCAAAACAATCATCTTACCATATAAAGGCAAAATAGTCATTTTACCATATAAAGGCAAAACAAT
CATTTTACCACATAAT
Found at i:61639781 original size:31 final size:31
Alignment explanation
Indices: 61639733--61639845 Score: 160
Period size: 31 Copynumber: 3.7 Consensus size: 31
61639723 TTAGTCTTGA
* *
61639733 CATAT-ACTGGGCTGAAGCCTTTCCAAAAAT
1 CATATCACTGGGCCGAAGCCTTTTCAAAAAT
*
61639763 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCAAAAAT
*
61639794 CATATCACTGGGCCGAAGCCTTTTC-ATAAT
1 CATATCACTGGGCCGAAGCCTTTTCAAAAAT
*
61639824 -ATATCACTGGGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
61639846 ACTGTAAACG
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
29 21 0.28
30 8 0.11
31 47 0.62
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCAAAAAT
Found at i:61639919 original size:42 final size:42
Alignment explanation
Indices: 61639869--61640002 Score: 223
Period size: 42 Copynumber: 3.2 Consensus size: 42
61639859 TGGCCCTTAG
*
61639869 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
* * *
61639911 GCTCATTTCAATATCATATGTAATGCCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
61639953 GCCCATTTCAGTATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
61639995 GCCCATTT
1 GCCCATTT
61640003 GGGGAGACTA
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 84 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:61640178 original size:25 final size:25
Alignment explanation
Indices: 61640150--61640219 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
61640140 CTCTTTCAAT
61640150 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
61640175 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
61640200 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
61640220 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:61641086 original size:27 final size:27
Alignment explanation
Indices: 61641024--61641101 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
61641014 GGGCATATTC
* *
61641024 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
*
61641051 GTCACTTTACCCTATAGGGGCT-TTACG
1 GTCATTTTACCCTATAGGGG-TATTACG
*
61641078 GTCTTTTTA-CCTATTAGGGGTATT
1 GTCATTTTACCCTA-TAGGGGTATT
61641102 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 5 0.12
27 37 0.86
28 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTACG
Found at i:61641162 original size:27 final size:27
Alignment explanation
Indices: 61641132--61641185 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
61641122 GGGTGTTTTG
61641132 GTAAATCTACAAACCAAGGGTATTTCA
1 GTAAATCTACAAACCAAGGGTATTTCA
* * ** *
61641159 GTAACTTTGTAAACCAATGGTATTTCA
1 GTAAATCTACAAACCAAGGGTATTTCA
61641186 ATAATTTTTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (27 bp):
GTAAATCTACAAACCAAGGGTATTTCA
Found at i:61641239 original size:27 final size:27
Alignment explanation
Indices: 61641146--61641249 Score: 102
Period size: 27 Copynumber: 3.8 Consensus size: 27
61641136 ATCTACAAAC
* *
61641146 CAAGGGTATTTCAGTAACTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *
61641173 CAATGGTATTTCAATAATTTT-TAGAAAGT
1 CAAGGGTATTTCAGTAATTTTGT--AAA-T
* *
61641202 CAAAGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
**
61641229 CAAGGGTATTTTGGTAATTTT
1 CAAGGGTATTTCAGTAATTTT
61641250 ACAAACTAGG
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
26 1 0.02
27 37 0.59
28 6 0.10
29 18 0.29
30 1 0.02
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:61641262 original size:27 final size:27
Alignment explanation
Indices: 61641232--61641301 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
61641222 TGTAAATCAA
61641232 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
61641259 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
61641286 GGGCATTTTGGTAATT
1 GGGTATTTTGGTAATT
61641302 CTATCCTACA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:61641367 original size:27 final size:27
Alignment explanation
Indices: 61641333--61641518 Score: 239
Period size: 27 Copynumber: 6.9 Consensus size: 27
61641323 GTAATTTCAC
* * *
61641333 AATCGAGGGTAAAACGGTAATTTTTTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
61641360 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
*
61641387 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
61641414 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
61641441 AATCGAGGATAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
61641468 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
61641495 AATCGAAGGTAAAATGGTAATTCT
1 AATCGAGGGTAAAATGGTAATTCT
61641519 ACAAATTGAG
Statistics
Matches: 138, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 136 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:61641454 original size:81 final size:81
Alignment explanation
Indices: 61641333--61641529 Score: 281
Period size: 81 Copynumber: 2.4 Consensus size: 81
61641323 GTAATTTCAC
* * * * *
61641333 AATCGAGGGTAAAACGGTAATTTTTTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCAAGGGTAAAATGGTAATTCTATAAATC-GAGGATAAAATGGTAATTTTGTAAATCGAGGGT
*
61641397 AAAACGGTAATTCTGTA
65 AAAACGGTAATTCTATA
*
61641414 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGATAAAATGGTAATTTTGTAAATCGAGGGTG
1 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGATAAAATGGTAATTTTGTAAATCGAGGGTA
61641479 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
* *
61641495 AATCGAA-GGTAAAATGGTAATTCTACAAATTGAGG
1 AATC-AAGGGTAAAATGGTAATTCTATAAATCGAGG
61641530 GCATTTCAGT
Statistics
Matches: 105, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
81 102 0.97
82 3 0.03
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGATAAAATGGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:61645824 original size:47 final size:47
Alignment explanation
Indices: 61645761--61646123 Score: 532
Period size: 47 Copynumber: 7.6 Consensus size: 47
61645751 CCCTTCGGGA
* * *
61645761 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
61645808 CTTATCACATATATACAGTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61645855 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
61645902 CTTATCGCACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
61645949 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
61645998 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
61646045 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
61646092 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
61646124 TCAAATATAC
Statistics
Matches: 293, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 226 0.77
49 65 0.22
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:61646021 original size:143 final size:143
Alignment explanation
Indices: 61645761--61646123 Score: 536
Period size: 143 Copynumber: 2.6 Consensus size: 143
61645751 CCCTTCGGGA
** * * *
61645761 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
1 CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
* * *
61645824 AGTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACA
* *
61645889 TTGGCCATTCGGC
131 TCGGCCATTAGGC
*
61645902 CTTATCGCACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACACATACACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
61645966 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCA
65 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-TGTTCACATTCATCA
*
61646030 CATCGGCTATTAGGC
129 CATCGGCCATTAGGC
* * * *
61646045 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
61646110 ACTTTCACATTCAT
66 ACTTTCACATTCAT
61646124 TCAAATATAC
Statistics
Matches: 200, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
140 1 0.00
141 47 0.23
143 150 0.75
144 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (143 bp):
CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:61651739 original size:27 final size:27
Alignment explanation
Indices: 61651685--61651778 Score: 100
Period size: 27 Copynumber: 3.4 Consensus size: 27
61651675 AGCAGAGTGA
*
61651685 CAGAGTCACCAGATACAGATAATCGTGG
1 CAGAGCCACCAGA-ACAGATAATCGTGG
* *
61651713 TAGAGCCACCAGAACAGA-AATATGTGG
1 CAGAGCCACCAGAACAGATAAT-CGTGG
* * *
61651740 CAGAGCCACCAGATCAGATAATTGTAG
1 CAGAGCCACCAGAACAGATAATCGTGG
*
61651767 CATAGCCACCAG
1 CAGAGCCACCAG
61651779 GACGCTTCCT
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.05
27 40 0.70
28 14 0.25
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CAGAGCCACCAGAACAGATAATCGTGG
Found at i:61657079 original size:40 final size:40
Alignment explanation
Indices: 61657022--61657251 Score: 336
Period size: 40 Copynumber: 5.8 Consensus size: 40
61657012 ATTTGAATAC
* * * *
61657022 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGA-TAT
61657062 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
61657102 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
61657142 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
61657182 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
61657222 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
61657252 TTGTGGTTAT
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 173 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:61663306 original size:27 final size:26
Alignment explanation
Indices: 61663271--61663382 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
61663261 AGCATGGTTG
* *
61663271 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
61663297 CCAGATACAGATAATAGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
61663325 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
61663352 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
61663379 CCAG
1 CCAG
61663383 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:61663363 original size:54 final size:54
Alignment explanation
Indices: 61663271--61663382 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
61663261 AGCATGGTTG
* *
61663271 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATAGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATAGTGGCAGAGCCA
* * *
61663325 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATAGTGGCAGAGCCA
61663379 CCAG
1 CCAG
61663383 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATAGTGGCAGAGCCA
Found at i:61672510 original size:39 final size:39
Alignment explanation
Indices: 61672396--61672691 Score: 425
Period size: 40 Copynumber: 7.5 Consensus size: 39
61672386 AAACCAAGTA
* * *
61672396 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAGATG
1 CCTTCGGGACTTAGCCCGGA-ATAG-TAACTCGCACAAATG
* *
61672435 CCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG-AATAGTAACTCGCACAAATG
61672475 CCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATG
*
61672514 CCTTCGGGAATTAGCCCGGAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATG
61672553 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
* *
61672593 CCTTCGGGACTTAGCCCGGATATAGTAACTCACAAAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
* * *
61672633 CCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
61672673 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
61672692 TTATCATCCG
Statistics
Matches: 235, Mismatches: 17, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
39 90 0.38
40 145 0.62
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATG
Found at i:61672604 original size:118 final size:118
Alignment explanation
Indices: 61672396--61672691 Score: 443
Period size: 118 Copynumber: 2.5 Consensus size: 118
61672386 AAACCAAGTA
* * * * *
61672396 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAGATGCCTTTGGGACTTAGCCCGGTTATAG
1 CCTTCGGGAATTAGCCCGGA-ATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
61672460 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
64 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACAAAAATG
61672514 CCTTCGGGAATTAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGAATTAGCCCGGAATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
61672579 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACAAAAATG
65 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACAAAAATG
** *
61672633 CCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGAATTAGCCCGGAA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
61672692 TTATCATCCG
Statistics
Matches: 163, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
117 1 0.01
118 86 0.53
119 41 0.25
120 35 0.21
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (118 bp):
CCTTCGGGAATTAGCCCGGAATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACAAAAATG
Found at i:61672668 original size:80 final size:80
Alignment explanation
Indices: 61672396--61672691 Score: 424
Period size: 79 Copynumber: 3.7 Consensus size: 80
61672386 AAACCAAGTA
* * * * *
61672396 CCTTCGGGATTTAG-CCGG-ATATAGCT-ACTCGCTCAGATGCCTTTGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGAAT-TAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
61672458 AGTAACTCGCACAAATG
64 AGTAACTCGCACAAATG
*
61672475 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATGCCTTCGGGAATTAGCCCGGA-ATAG
1 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
61672538 TAACTCGCACAAATG
66 TAACTCGCACAAATG
61672553 CCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* *
61672617 GTAACTCACAAAAATG
65 GTAACTCGCACAAATG
* * *
61672633 CCTTCGGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
61672692 TTATCATCCG
Statistics
Matches: 198, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
77 1 0.01
78 39 0.20
79 81 0.41
80 74 0.37
81 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:61685371 original size:28 final size:28
Alignment explanation
Indices: 61685331--61685409 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
61685321 GTAATCAAAT
* *
61685331 ATGGCACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
61685359 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
61685387 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
61685410 CGAATGATTC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:61691915 original size:40 final size:40
Alignment explanation
Indices: 61691724--61691904 Score: 274
Period size: 40 Copynumber: 4.5 Consensus size: 40
61691714 GGATATAGCT
* * * *
61691724 ACTCGCTCGAATGCCTTCGGGGCATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
61691764 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
61691804 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
61691844 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
61691884 GCTCGCACAAATGCCTTCGGG
1 ACTCGCACAAATGCCTTCGGG
61691905 GCATGGCCCG
Statistics
Matches: 132, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 130 0.98
41 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:61695758 original size:12 final size:12
Alignment explanation
Indices: 61695741--61695767 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
61695731 ATTCCGAAGT
61695741 ATATATATATAC
1 ATATATATATAC
61695753 ATATATATATAC
1 ATATATATATAC
61695765 ATA
1 ATA
61695768 ACTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:61696297 original size:27 final size:28
Alignment explanation
Indices: 61696213--61696310 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
61696203 CATGAGATTG
* * * *
61696213 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
61696242 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
61696270 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
61696297 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
61696311 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:61696321 original size:27 final size:27
Alignment explanation
Indices: 61696241--61696323 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
61696231 TAAATTGTAC
* *
61696241 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
61696269 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
61696296 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
61696323 A
1 A
61696324 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:61704934 original size:40 final size:40
Alignment explanation
Indices: 61704897--61705088 Score: 296
Period size: 40 Copynumber: 4.8 Consensus size: 40
61704887 GGATATAGCT
* * * *
61704897 ACTCGCTCGAATGCCTTCGGGGCATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
61704937 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
61704977 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
61705017 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
61705057 GCTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
61705089 TTATCATCCA
Statistics
Matches: 143, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
40 141 0.99
41 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:61723954 original size:22 final size:21
Alignment explanation
Indices: 61723904--61723955 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
61723894 ATTAGAGGTC
* *
61723904 TTTGTTTTCTGGCTGACTTGA
1 TTTGTTTCCTGGCCGACTTGA
61723925 TTTGTTTCCTGGCCGACTTGA
1 TTTGTTTCCTGGCCGACTTGA
61723946 TGTTGTTTCC
1 T-TTGTTTCC
61723956 GTTTGATGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 20 0.71
22 8 0.29
ACGTcount: A:0.08, C:0.19, G:0.23, T:0.50
Consensus pattern (21 bp):
TTTGTTTCCTGGCCGACTTGA
Found at i:61746120 original size:49 final size:49
Alignment explanation
Indices: 61746066--61746290 Score: 315
Period size: 49 Copynumber: 4.5 Consensus size: 49
61746056 CTGGTACGCA
* * *
61746066 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
*
61746115 TAGTAGCCTACACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
61746164 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * *
61746214 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAATTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
61746265 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
61746291 TGCAACCTCA
Statistics
Matches: 157, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
49 77 0.49
50 43 0.27
51 36 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:61746290 original size:101 final size:98
Alignment explanation
Indices: 61746053--61746290 Score: 332
Period size: 99 Copynumber: 2.4 Consensus size: 98
61746043 TAGCCAAAGC
* * * ** *
61746053 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
61746118 TAGCCTACACTTAGTACTACACACGTGACCAAT
66 TAGCCTACACTTAGTACTACACACGTGACCAAT
* * * *
61746151 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTA
*
61746216 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
65 GTAGCCTACACTTAGTACTACACACGTGA-C-CAAT
* *
61746252 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACA
61746291 TGCAACCTCA
Statistics
Matches: 122, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
98 40 0.33
99 42 0.34
100 1 0.01
101 39 0.32
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (98 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
TAGCCTACACTTAGTACTACACACGTGACCAAT
Found at i:61757939 original size:171 final size:177
Alignment explanation
Indices: 61757622--61757953 Score: 410
Period size: 171 Copynumber: 1.9 Consensus size: 177
61757612 TAAAAATTAA
* * * * * *
61757622 AACATGGTATGATAAGATTATGCAAAAATATATATATATATATTAGTAGTTATTTAATCATGAGT
1 AACATGCTATGATAAGATTATGCAAAAATATATAGATATATATTAATAGTCATTCAATCATAAGT
* * * * * *
61757687 ATTTTTATCATCAAATTATAAAAAAATTACAATATGATTATTTAACTATTCAATTTTGTATTATT
66 ATTTTTATCATCAAATTATAAAAAAATTACAATATAATCACTTAACTATTCAAATTTATACTATT
*
61757752 CTATTCACGTAACTATATTAAATTTTAGAGTGCTTCCATTTCTACAT
131 CTAGTCACGTAACTATATTAAATTTTAGAGTGCTTCCATTTCTACAT
*
61757799 AACATGCTATGATAAGATTATG-AAAAA-A-ATAGAT-TATATTAATAGTCATTCAATCATAATT
1 AACATGCTATGATAAGATTATGCAAAAATATATAGATATATATTAATAGTCATTCAATCATAAGT
* * * *
61757860 A-TTTTATCATTC-AATTAT-CAAAAGTTACAATATAATCACTTAATTATTTAAATTTATACTAT
66 ATTTTTATCA-TCAAATTATAAAAAAATTACAATATAATCACTTAACTATTCAAATTTATACTAT
* *
61757922 TCTGGTCAC-TAAACTATATTAGATTTTAGAGT
130 TCTAGTCACGT-AACTATATTAAATTTTAGAGT
61757954 ATTTTCATTT
Statistics
Matches: 133, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
170 1 0.01
171 61 0.46
172 14 0.11
173 25 0.19
174 5 0.04
175 1 0.01
176 5 0.04
177 21 0.16
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (177 bp):
AACATGCTATGATAAGATTATGCAAAAATATATAGATATATATTAATAGTCATTCAATCATAAGT
ATTTTTATCATCAAATTATAAAAAAATTACAATATAATCACTTAACTATTCAAATTTATACTATT
CTAGTCACGTAACTATATTAAATTTTAGAGTGCTTCCATTTCTACAT
Found at i:61761924 original size:29 final size:29
Alignment explanation
Indices: 61761892--61761955 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
61761882 GTGTAGGTAA
*
61761892 TTATATTATTTTAAAAGTGTTTTTATCTT
1 TTATATTATTTTAAAAGTATTTTTATCTT
* *
61761921 TTATATTATTTTGAAGGTATTTTTATCTT
1 TTATATTATTTTAAAAGTATTTTTATCTT
61761950 TTATAT
1 TTATAT
61761956 AGAAATAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.08, T:0.62
Consensus pattern (29 bp):
TTATATTATTTTAAAAGTATTTTTATCTT
Found at i:61768136 original size:14 final size:14
Alignment explanation
Indices: 61768082--61768144 Score: 65
Period size: 14 Copynumber: 4.4 Consensus size: 14
61768072 GAAATTTTTT
*
61768082 AAAGTAAAAACAATA
1 AAAG-AAAAAAAATA
*
61768097 AAAGAAAAAAATTA
1 AAAGAAAAAAAATA
*
61768111 ATAA-AATAAAAATA
1 A-AAGAAAAAAAATA
*
61768125 AAAGAAAAAAAAGA
1 AAAGAAAAAAAATA
61768139 AAAGAA
1 AAAGAA
61768145 GGGTAAAGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.05
14 32 0.80
15 6 0.15
ACGTcount: A:0.79, C:0.02, G:0.08, T:0.11
Consensus pattern (14 bp):
AAAGAAAAAAAATA
Found at i:61770894 original size:39 final size:39
Alignment explanation
Indices: 61770836--61770951 Score: 115
Period size: 39 Copynumber: 3.0 Consensus size: 39
61770826 ATATAACCAT
* * * *
61770836 ATAACATTTAAACATATATCATAATACTCATATAATTAC
1 ATAACATTCAAGCACATATCACAATACTCATATAATTAC
** * * * *
61770875 ATAATGTTCAAGCACATATCGCAATAATCATATGATCAC
1 ATAACATTCAAGCACATATCACAATACTCATATAATTAC
* * *
61770914 ATAACATTCAAGCATATTTCCCAATACTCATATAATTA
1 ATAACATTCAAGCACATATCACAATACTCATATAATTA
61770952 TTTTATAAAC
Statistics
Matches: 59, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.44, C:0.19, G:0.04, T:0.33
Consensus pattern (39 bp):
ATAACATTCAAGCACATATCACAATACTCATATAATTAC
Found at i:61771863 original size:25 final size:23
Alignment explanation
Indices: 61771811--61771865 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
61771801 TATAAATAGT
61771811 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
61771834 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
61771859 AATAGTG
1 AATAGTG
61771866 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:61771965 original size:26 final size:26
Alignment explanation
Indices: 61771936--61771989 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
61771926 AAAAAATATG
61771936 TACATAATATAGTGTAAAATA-ATACA
1 TACATAATATAGT-TAAAATATATACA
*
61771962 TACATACTATAGTTAAAATATATACA
1 TACATAATATAGTTAAAATATATACA
61771988 TA
1 TA
61771990 AGATAAAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.52, C:0.09, G:0.06, T:0.33
Consensus pattern (26 bp):
TACATAATATAGTTAAAATATATACA
Found at i:61772047 original size:25 final size:24
Alignment explanation
Indices: 61772011--61772143 Score: 89
Period size: 23 Copynumber: 5.6 Consensus size: 24
61772001 AAAAAAAAAT
*
61772011 ATATATAAATAATAAAGTATTAAAG
1 ATATATACATAATAAAGTATT-AAG
*
61772036 ATATATACATAA-AATAGTA-TAAT
1 ATATATACATAATAA-AGTATTAAG
* * * *
61772059 ATATATACGTAATATAGAATTTAG
1 ATATATACATAATAAAGTATTAAG
* * * *
61772083 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATAAAGTATTAAG
61772105 AATATATACATAATATAA-TATTAAG
1 -ATATATACATAATA-AAGTATTAAG
*
61772130 AAATATA-ATAATAA
1 ATATATACATAATAA
61772144 CAAAAAAAAG
Statistics
Matches: 85, Mismatches: 16, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
22 3 0.04
23 37 0.44
24 26 0.31
25 19 0.22
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (24 bp):
ATATATACATAATAAAGTATTAAG
Found at i:61772051 original size:30 final size:28
Alignment explanation
Indices: 61771974--61772051 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
61771964 CATACTATAG
* *
61771974 TTAAAATATATACATAAGATAAAATGTA
1 TTAAAATATATACATAAAATAAAAAGTA
** * *
61772002 AAAAAAAATATATAT-AAATAATAAAGTA
1 TTAAAATATATACATAAAATAA-AAAGTA
61772030 TTAAAGATATATACATAAAATA
1 TTAAA-ATATATACATAAAATA
61772052 GTATAATATA
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
27 5 0.14
28 19 0.51
29 8 0.22
30 5 0.14
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (28 bp):
TTAAAATATATACATAAAATAAAAAGTA
Found at i:61772062 original size:23 final size:25
Alignment explanation
Indices: 61772007--61772075 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
61771997 ATGTAAAAAA
*
61772007 AAATATATATAAATAATAA-AGTATT
1 AAATATATATACATAA-AATAGTATT
*
61772032 AAAGATATATACATAAAATAGTA-T
1 AAATATATATACATAAAATAGTATT
* *
61772056 -AATATATATACGTAATATAG
1 AAATATATATACATAAAATAG
61772076 AATTTAGAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
23 17 0.45
24 3 0.08
25 18 0.47
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (25 bp):
AAATATATATACATAAAATAGTATT
Found at i:61772665 original size:30 final size:30
Alignment explanation
Indices: 61772629--61772726 Score: 178
Period size: 30 Copynumber: 3.3 Consensus size: 30
61772619 AGGTACAAGT
*
61772629 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
61772659 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
61772689 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
61772719 GGTGGTGG
1 GGTGGTGG
61772727 CAAAGTGTAA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.18, C:0.06, G:0.51, T:0.24
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:61772686 original size:18 final size:18
Alignment explanation
Indices: 61772663--61772716 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
61772653 GGAGTAGGTG
61772663 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
61772681 GTGGAG-TAG-GT-G---
1 GTGGAGCAAGTGTGGCTA
61772693 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
61772711 GTGGAG
1 GTGGAG
61772717 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 6 0.21
13 2 0.07
14 2 0.07
15 2 0.07
16 2 0.07
17 2 0.07
18 12 0.43
ACGTcount: A:0.20, C:0.07, G:0.50, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:61774071 original size:46 final size:46
Alignment explanation
Indices: 61774021--61774149 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
61774011 TGGTTGAGCA
*
61774021 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
61774067 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
61774113 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61774150 GCGGGTTACA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:61776369 original size:91 final size:92
Alignment explanation
Indices: 61776130--61776481 Score: 373
Period size: 91 Copynumber: 3.8 Consensus size: 92
61776120 ACTAAACATT
* * *
61776130 AAAAACAA-AAATTGAAAATAGCTCAGCACGTGAT-CC-AAGGCTCAACTCACCTCTCGTAATAT
1 AAAAAAAAGAAATTGAAAATACCTCAG--CGTG-TGCCTAAGGCTCAACTCACCTCTCGCAATAT
* *
61776192 GAGTTGA--TTTTTG-CAAAGCATAAAATAA
63 GAGTTGATTTTTTTGACAAA-CATAAATTGA
** * * *
61776220 AAATAAAAATCAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATG
1 AAA-AAAAAGAAATTGAAAATACCTCAGCGTGTG-CCTAAGGCTCAACTCACCTCTCGCAATATG
61776285 AGTTGATTTTTTTGACAAACATAAATTGA
64 AGTTGATTTTTTTGACAAACATAAATTGA
* * *
61776314 AAAAAAAAGAAATTGAAAATATCTCAGCGTGT-CCTGAGGCTGAACTCACCTCTCGCAATATGAG
1 AAAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTAAGGCTCAACTCACCTCTCGCAATATGAG
* *
61776378 TTGATTTTTTGGAAAAACA-AAATTTG-
66 TTGATTTTTTTGACAAACATAAA-TTGA
* * ** *
61776404 -AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGA
1 AAAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCT-AAGGCTCAACTCACCTCTCGCAATATGA
*
61776468 GCTGATTTTTTTGA
65 GTTGATTTTTTTGA
61776482 TTTTTTTTGA
Statistics
Matches: 224, Mismatches: 27, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
89 29 0.13
90 11 0.05
91 92 0.41
92 46 0.21
93 25 0.11
94 17 0.08
95 4 0.02
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.27
Consensus pattern (92 bp):
AAAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGACAAACATAAATTGA
Found at i:61776421 original size:13 final size:14
Alignment explanation
Indices: 61776389--61776421 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
61776379 TGATTTTTTG
61776389 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
61776403 GAAAAACAGAATTT
1 GAAAAACAAAATTT
61776417 GAAAA
1 GAAAA
61776422 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:61776449 original size:182 final size:183
Alignment explanation
Indices: 61776130--61776481 Score: 455
Period size: 182 Copynumber: 1.9 Consensus size: 183
61776120 ACTAAACATT
* *
61776130 AAAAACAAAAATTGAAAATAGCTCAGCACGTGATCCAAGGCTCAACTCACCTCTCGTAATATGAG
1 AAAAAAAAAAATTGAAAATAGCTCAG-ACGTGATCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
61776195 TTGATTTTTGCAAAGCATAAAATAAAAATAAAAATCAATTGAAAATACCTCGGCGTGTGATCTGA
65 TTGATTTTTGCAAAGAACAAAATAAAAATAAAAATCAATTGAAAATACCTCAGCGTGTGATCTAA
* *
61776260 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGA
130 GGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGACAAACATAAATTGA
* * *
61776314 AAAAAAAAGAAATTGAAAATATCTCAG-CGTG-TCCTGAGGCTGAACTCACCTCTCGCAATATGA
1 AAAAAAAA-AAATTGAAAATAGCTCAGACGTGATCC-AAGGCTCAACTCACCTCTCGCAATATGA
* *** * *
61776377 GTTGATTTTTTGGAAA-AACAAAATTTGAA-AAACA-GAATTTGAAAATACCTCAGCGTGTGAGT
64 GTTGA-TTTTTGCAAAGAACAAAATAAAAATAAAAATCAA-TTGAAAATACCTCAGCGTGTGA-T
61776439 C-AAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGA
126 CTAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGA
61776482 TTTTTTTTGA
Statistics
Matches: 146, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
181 2 0.01
182 67 0.46
183 44 0.30
184 16 0.11
185 17 0.12
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.27
Consensus pattern (183 bp):
AAAAAAAAAAATTGAAAATAGCTCAGACGTGATCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGCAAAGAACAAAATAAAAATAAAAATCAATTGAAAATACCTCAGCGTGTGATCTAAG
GCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGACAAACATAAATTGA
Found at i:61776516 original size:12 final size:13
Alignment explanation
Indices: 61776488--61776521 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
61776478 TTGATTTTTT
*
61776488 TTGAACACAGAAA
1 TTGAAAACAGAAA
61776501 TTGAAAACAG-AA
1 TTGAAAACAGAAA
61776513 TTGAAAACA
1 TTGAAAACA
61776522 CCTCAGCGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.56, C:0.12, G:0.15, T:0.18
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:61776772 original size:75 final size:75
Alignment explanation
Indices: 61776504--61777106 Score: 737
Period size: 73 Copynumber: 8.2 Consensus size: 75
61776494 ACAGAAATTG
* * * *
61776504 AAAACAG-AATTGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCT-
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
61776565 ATTTTTTTTGA
66 A-TTTTTTTGA
*
61776576 AACAGACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AA-A-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
61776641 TGA--TTTTTGA
64 TGATTTTTTTGA
* * * * * * *
61776651 CAAATAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
61776714 ATTTTTTTGA
66 ATTTTTTTGA
* * * * *
61776724 AAAACAAAAATTGAAAATACATCAACGTGTCTTGAGGTTCAACTCACCTCTTGCAATATGAGCTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
61776789 ATTTTTTTTTA
66 A-TTTTTTTGA
* *
61776800 AAGACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
61776865 A--TTTTTGA
66 ATTTTTTTGA
* * * *
61776873 AAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
61776938 ATTTTTTTGA
66 ATTTTTTTGA
* * * *
61776948 AAAATAGAAATTGGAAATACATCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
61777013 A--GTTTTGA
66 ATTTTTTTGA
* * * * * **
61777021 CAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
61777086 ATTTTTTT-A
66 ATTTTTTTGA
* *
61777095 GAAACATAAATT
1 AAAACAGAAATT
61777107 AACAAAACGA
Statistics
Matches: 459, Mismatches: 57, Indels: 28
0.84 0.10 0.05
Matches are distributed among these distances:
71 37 0.08
72 3 0.01
73 171 0.37
74 17 0.04
75 127 0.28
76 68 0.15
77 35 0.08
78 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (75 bp):
AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTGA
Found at i:61776796 original size:148 final size:147
Alignment explanation
Indices: 61776501--61777098 Score: 733
Period size: 148 Copynumber: 4.0 Consensus size: 147
61776491 AACACAGAAA
* * *
61776501 TTGAAAACAG-AATTGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAG
1 TTGAAAATAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
** * * *
61776563 CTATTTTTTTTGAAACAGACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTC
66 -T-TGATTTTTGAAA-A-ACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTC
61776628 TCGCAATATGAGTTGA--TTT
127 TCGCAATATGAGTTGATTTTT
* * * *
61776647 TTGACAAATAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGA-AAATAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
61776710 GTTGATTTTTTTGAAAAACAAAAATTGAAAATACATCAACGTGTCTTGAGGTTCAACTCACCTCT
65 GTTGA--TTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCT
* *
61776775 TGCAATATGAGCTGATTTTTT
128 CGCAATATGAGTTGA-TTTTT
* * * *
61776796 TTTAAAGACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ATAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
61776861 GTTGATTTTTGAAAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTATCG
65 GTTGATTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
61776926 CAATATGAGTTGATTTTT
130 CAATATGAGTTGATTTTT
* * * *
61776944 TTGAAAAATAGAAATTGGAAATACATCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTG-AAAATAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * **
61777009 GTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCG
65 GTTGATTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
61777074 CAATATGAGTTGATTTTT
130 CAATATGAGTTGATTTTT
61777092 TTAGAAA
1 TT-GAAA
61777099 CATAAATTAA
Statistics
Matches: 398, Mismatches: 42, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
146 62 0.16
147 6 0.02
148 201 0.51
149 91 0.23
150 1 0.00
151 37 0.09
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (147 bp):
TTGAAAATAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTT
Found at i:61777302 original size:13 final size:14
Alignment explanation
Indices: 61777278--61777323 Score: 55
Period size: 13 Copynumber: 3.6 Consensus size: 14
61777268 GAGTTGATTT
61777278 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
61777292 TT-AAAAGCAGAAA
1 TTGAAAAACAGAAA
61777305 TTGAAAAA-A-AAA
1 TTGAAAAACAGAAA
61777317 TT-AAAAA
1 TTGAAAAA
61777324 TACCTCGGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
11 5 0.17
12 5 0.17
13 13 0.45
14 6 0.21
ACGTcount: A:0.67, C:0.04, G:0.11, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:61777355 original size:98 final size:100
Alignment explanation
Indices: 61777110--61777467 Score: 415
Period size: 98 Copynumber: 3.7 Consensus size: 100
61777100 ATAAATTAAC
* **
61777110 AAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACAAGTTG
1 AAAAC-AAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * *
61777175 A--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTGA
65 ATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTGA
*
61777209 AAAACAGAAATTGAAAATACCTTAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACA-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
61777274 ATTTTTGAAAAACAGAAATT-AAAAGCAGAAATTGA
65 ATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTGA
* * * *
61777309 AAAA-AAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA
1 AAAACAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
61777373 TTTTTGAAAAGCAGAAATTG--AA--A-AAA-CG-
66 TTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTGA
* * *
61777401 -----GAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTT
1 AAAACAAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
61777461 GATTTTT
64 GATTTTT
61777468 TTGAAAGATA
Statistics
Matches: 230, Mismatches: 23, Indels: 21
0.84 0.08 0.08
Matches are distributed among these distances:
88 17 0.07
90 41 0.18
93 1 0.00
94 3 0.01
95 1 0.00
97 2 0.01
98 73 0.32
99 61 0.27
100 16 0.07
101 15 0.07
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (100 bp):
AAAACAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTGA
Found at i:61777487 original size:90 final size:88
Alignment explanation
Indices: 61777294--61777467 Score: 255
Period size: 90 Copynumber: 2.0 Consensus size: 88
61777284 AACAGAAATT
* * *
61777294 AAAAGCAGAAATTGAAAAAA---AAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCT
1 AAAAGCAGAAATTGAAAAAACGGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCT
61777356 CTCGCAATATGAGTTGATTTTTG
66 CTCGCAATATGAGTTGATTTTTG
* * *
61777379 AAAAGCAGAAATTGAAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCAC
1 AAAAGCAGAAATTGAAAAAACGGAAATTAAAAATACCTC-G-GCGTGACCCGAGGCCCAACTCAC
61777444 CTCTCGCAATATGAGTTGATTTTT
64 CTCTCGCAATATGAGTTGATTTTT
61777468 TTGAAAGATA
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
85 20 0.26
88 15 0.19
89 1 0.01
90 42 0.54
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.24
Consensus pattern (88 bp):
AAAAGCAGAAATTGAAAAAACGGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCT
CTCGCAATATGAGTTGATTTTTG
Found at i:61778349 original size:17 final size:18
Alignment explanation
Indices: 61778327--61778360 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
61778317 TTGATCCCTC
61778327 TCTTTT-TCTTTTTTTTT
1 TCTTTTCTCTTTTTTTTT
61778344 TCTTTTCTCTTTTTTTT
1 TCTTTTCTCTTTTTTTT
61778361 AAGATGCCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (18 bp):
TCTTTTCTCTTTTTTTTT
Found at i:61784212 original size:24 final size:24
Alignment explanation
Indices: 61784184--61784231 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
61784174 CTGCGTGGTT
61784184 TGCACAACTAGCGTTTGGATCGTA
1 TGCACAACTAGCGTTTGGATCGTA
61784208 TGCACAACTAGCGTTTGGATCGTA
1 TGCACAACTAGCGTTTGGATCGTA
61784232 CCACTTTGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (24 bp):
TGCACAACTAGCGTTTGGATCGTA
Found at i:61789241 original size:40 final size:39
Alignment explanation
Indices: 61789183--61789261 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 39
61789173 ACTTAATTCA
* * *
61789183 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCT-AACCCGGATACAATC
* *
61789223 CCAGCATGAAGCCAGCGGGTCTCTAACCCGGATGCAATC
1 CCAGCATGAAGCCAGCGGGACTCTAACCCGGATACAATC
61789262 TCAGTACAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
39 14 0.41
40 20 0.59
ACGTcount: A:0.28, C:0.32, G:0.23, T:0.18
Consensus pattern (39 bp):
CCAGCATGAAGCCAGCGGGACTCTAACCCGGATACAATC
Found at i:61789444 original size:47 final size:45
Alignment explanation
Indices: 61789338--61789493 Score: 165
Period size: 47 Copynumber: 3.4 Consensus size: 45
61789328 TGCACACTTT
* * *
61789338 TCACAATTGGTCATTCAGCCTTATCACA-TATTCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATTATT-ACTTTCACAT-TCA
**
61789384 TCACATTAACCATTCGGCCTTATCACATGTATGTACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACAT-TAT-TACTTTCACATTCA
*
61789431 TCACATTGGCCATTCGGCCTTATCACA-TATACACATTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATTAT-TAC--TTTCACATTCA
61789478 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
61789494 ATCTTAAGCT
Statistics
Matches: 95, Mismatches: 9, Indels: 11
0.83 0.08 0.10
Matches are distributed among these distances:
45 24 0.25
46 5 0.05
47 65 0.68
48 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (45 bp):
TCACATTGGCCATTCGGCCTTATCACATTATTACTTTCACATTCA
Found at i:61790595 original size:18 final size:17
Alignment explanation
Indices: 61790574--61790607 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
61790564 TATTAATATA
61790574 TATAAAAATACAAAAAAG
1 TATAAAAATA-AAAAAAG
*
61790592 TATAAACATAAAAAAA
1 TATAAAAATAAAAAAA
61790608 TAAAAAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.18
Consensus pattern (17 bp):
TATAAAAATAAAAAAAG
Found at i:61790746 original size:11 final size:12
Alignment explanation
Indices: 61790714--61790746 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
61790704 ATTCCCCTCT
61790714 CTTCTCT-TTCC
1 CTTCTCTCTTCC
61790725 CTTCTCTCTTCC
1 CTTCTCTCTTCC
61790737 C-TCTCTCTTC
1 CTTCTCTCTTC
61790747 TTTTTTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (12 bp):
CTTCTCTCTTCC
Found at i:61791242 original size:3 final size:3
Alignment explanation
Indices: 61791209--61791272 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
61791199 AATATCCTTG
* * *
61791209 TTA TT- TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
*
61791254 TTA GTA TATA TT- TTA TTA T
1 TTA TTA T-TA TTA TTA TTA T
61791273 GTACGTGTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
2 4 0.08
3 39 0.80
4 6 0.12
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:61791269 original size:22 final size:22
Alignment explanation
Indices: 61791215--61791275 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 22
61791205 CTTGTTATTT
*
61791215 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
61791236 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
61791258 TATATATT-TTATTATGTA
1 TAT-TATTATTATTATGTA
61791276 CGTGTATACA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
21 13 0.36
22 19 0.53
23 4 0.11
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.57
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:61791282 original size:22 final size:23
Alignment explanation
Indices: 61791215--61791283 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 23
61791205 CTTGTTATTT
* *
61791215 TATTAGTATTAT-TAGTATTACTA
1 TATTATTATTATGTAGTAGTA-TA
*
61791238 TTATTATTATTATGTATTAGTATA
1 -TATTATTATTATGTAGTAGTATA
61791262 TATT-TTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
61791284 CATATATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
22 15 0.38
23 5 0.13
24 13 0.33
25 6 0.15
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.55
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:61797204 original size:40 final size:40
Alignment explanation
Indices: 61797152--61797335 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 40
61797142 TAACTCATTC
* *
61797152 AATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAGAAACTCGCACA
* *
61797192 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
* * *
61797232 AAGGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
* ** ** *
61797272 AAGGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAGAAAC-TCGCACA
*
61797313 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
61797336 CAGCATTCAA
Statistics
Matches: 127, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
39 8 0.06
40 108 0.85
41 11 0.09
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
Found at i:61797268 original size:80 final size:80
Alignment explanation
Indices: 61797155--61797335 Score: 201
Period size: 80 Copynumber: 2.3 Consensus size: 80
61797145 CTCATTCAAT
* * *
61797155 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATA-
*
61797218 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
* * **
61797234 GGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACAAAGGCCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTA-AAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATA
61797298 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
61797315 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
61797336 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
79 6 0.07
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:61807116 original size:56 final size:56
Alignment explanation
Indices: 61807011--61807123 Score: 165
Period size: 56 Copynumber: 2.0 Consensus size: 56
61807001 TTCCAAGGAA
**
61807011 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTT
** *
61807067 AATCAACTCATATTGCGAGA-AGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
1 AATCAACTCATATTGCGAGAGA-TGAGTTGAGCCTCAAGACACGCCGAGGTATTTTT
61807123 A
1 A
61807124 GTTTATGTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 1 0.02
56 50 0.98
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (56 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTT
Found at i:61807467 original size:74 final size:74
Alignment explanation
Indices: 61807067--61808211 Score: 1340
Period size: 74 Copynumber: 15.4 Consensus size: 74
61807057 AGGTATTTTT
* * * * * * * *
61807067 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
61807132 TTT-----A
66 TTTCAAAAA
** ** *
61807136 AATTGACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
61807201 TTTTC---AA
65 TTTTCAAAAA
*
61807208 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
61807272 TGTCAAAAA
66 TTTCAAAAA
** *
61807281 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
61807346 TTTC---AA
66 TTTCAAAAA
* *
61807352 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
61807417 TGTCAAAAA
66 TTTCAAAAA
* ** *
61807426 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
*
61807491 TTTTCAAGAA
65 TTTTCAAAAA
* * * *
61807501 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTCCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
* *
61807566 TCAATTTATGTTTTTCAAA
66 T---TTCA-------AAAA
* *
61807585 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
61807650 TTTTC---AA
65 TTTTCAAAAA
*
61807657 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
61807722 TTTCAAAAA
66 TTTCAAAAA
** *
61807731 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
*
61807796 TTTTC---AT
65 TTTTCAAAAA
*
61807803 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
61807868 TGTCAAAAA
66 TTTCAAAAA
* ** *
61807877 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
*
61807942 TTTTCAAGAA
65 TTTTCAAAAA
* ** * *
61807952 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTCCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
* *
61808017 TCAATTTATGTTTTTCAAA
66 T---TTCA-------AAAA
61808036 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
***
61808101 TTTTTCAAA
66 TTTCAAAAA
* * * * * **
61808110 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTAC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
61808175 TTTC--AAA
66 TTTCAAAAA
* *
61808182 AATCAACTTATATTGCGAGAGGTGGGTTGA
1 AATCAACTCATATTGCGAGAGGTGAGTTGA
61808212 ACCTTTTAAT
Statistics
Matches: 949, Mismatches: 87, Indels: 77
0.85 0.08 0.07
Matches are distributed among these distances:
69 54 0.06
70 8 0.01
71 100 0.11
72 187 0.20
73 35 0.04
74 283 0.30
75 146 0.15
77 6 0.01
81 3 0.00
82 2 0.00
84 123 0.13
85 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (74 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
TTTCAAAAA
Found at i:61807757 original size:146 final size:146
Alignment explanation
Indices: 61807067--61808211 Score: 1426
Period size: 146 Copynumber: 7.7 Consensus size: 146
61807057 AGGTATTTTT
* * * * * * * *
61807067 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
** **
61807132 TTT-----AAATTGACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
66 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
61807192 AATTTTTGTTTTTCAA
131 AATTTTTGTTTTTCAA
*
61807208 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
* **
61807272 TGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
66 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
61807337 AATTTTTG-TTTTCAA
131 AATTTTTGTTTTTCAA
* *
61807352 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
* * ** *
61807417 TGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTC
66 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
* *
61807482 AATTTCTGCTTTTCAAGAA
131 AATTTTTGTTTTTC---AA
* * * *
61807501 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTCCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
* * *
61807566 TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTA
66 T---TTCA-------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
61807631 AGGTAATTTCAATTTTTGTTTTTCAA
121 AGGTAATTTCAATTTTTGTTTTTCAA
*
61807657 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
**
61807722 TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
66 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
61807787 AATTTTTGTTTTTCAT
131 AATTTTTGTTTTTCAA
*
61807803 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
* * ** *
61807868 TGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTC
66 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
* *
61807933 AATTTCTGCTTTTCAAGAA
131 AATTTTTGTTTTTC---AA
* ** * *
61807952 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTCCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
* *
61808017 TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
66 T---TTCA-------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
*
61808082 AGGTAATTTCAATTTCTGTTTTTTCAAA
121 AGGTAATTTCAATTTTTG-TTTTTC-AA
* * * * * **
61808110 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTAC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
* *
61808175 TTTC--AAAAATCAACTTATATTGCGAGAGGTGGGTTGA
66 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
61808212 ACCTTTTAAT
Statistics
Matches: 887, Mismatches: 83, Indels: 63
0.86 0.08 0.06
Matches are distributed among these distances:
140 24 0.03
141 33 0.04
144 43 0.05
145 156 0.18
146 242 0.27
149 125 0.14
152 4 0.00
153 3 0.00
155 2 0.00
156 63 0.07
158 58 0.07
159 129 0.15
160 5 0.01
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (146 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
AATTTTTGTTTTTCAA
Found at i:61807981 original size:451 final size:450
Alignment explanation
Indices: 61807141--61808201 Score: 1921
Period size: 451 Copynumber: 2.4 Consensus size: 450
61807131 TTTTAAATTG
**
61807141 ACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTTTC
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTTTC
61807206 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTTCT
66 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
61807270 GTTGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT
131 GTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT
*
61807335 TCAATTTTTGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGTTGAG
196 TCAATTTTTGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
61807400 GTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
261 GTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
61807465 CACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTG
326 CACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
61807530 AGCCTCAAGACACGTTGAGGTATTTTCAATTCCTGTTCAATTTATGTTTTTCAAAAATCA
391 AGCCTCAAGACACATTGAGGTATTTTCAATTCCTGTTCAATTTATGTTTTTCAAAAATCA
*
61807590 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTCAATTTTTGTTTTTC
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTTTC
61807655 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
66 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
61807720 GTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT
131 GTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT
*
61807785 TCAATTTTTGTTTTTCATAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGA
196 TCAATTTTTG-TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGA
61807850 GGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
260 GGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
61807915 ACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTT
325 ACACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTT
61807980 GAGCCTCAAGACACATTGAGGTATTTTCAATTCCTGTTCAATTTATGTTTTTCAAAAATCA
390 GAGCCTCAAGACACATTGAGGTATTTTCAATTCCTGTTCAATTTATGTTTTTCAAAAATCA
*
61808041 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTT
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTG-TTTTT
* * * * * *
61808106 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATT
65 C-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
** *
61808171 CTACTTTC--AAAAATCAACTTATATTGCGAGA
129 CTGTTTTCAAAAAAATCAACTCATATTGCGAGA
61808202 GGTGGGTTGA
Statistics
Matches: 590, Mismatches: 18, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
449 100 0.17
450 100 0.17
451 321 0.54
452 6 0.01
453 63 0.11
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (450 bp):
ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTTTC
AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT
TCAATTTTTGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
GTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
CACATTGAGGTATTTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCCTCAAGACACATTGAGGTATTTTCAATTCCTGTTCAATTTATGTTTTTCAAAAATCA
Found at i:61808171 original size:159 final size:159
Alignment explanation
Indices: 61807874--61808167 Score: 466
Period size: 159 Copynumber: 1.9 Consensus size: 159
61807864 CTGTTGTCAA
* *
61807874 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
**
61807939 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTAT
66 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACCGAGGTAT
61808004 TTTCAATTCCTGTTCAATTTATGTTTTTC
131 TTTCAATTCCTGTTCAATTTATGTTTTTC
* *
61808033 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
* ** * *
61808098 TGTTTTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTA
66 TG-CTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACCGAGGTA
61808161 TTTTCAA
130 TTTTCAA
61808168 ATTCTACTTT
Statistics
Matches: 123, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
158 54 0.44
159 64 0.52
160 5 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (159 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACCGAGGTAT
TTTCAATTCCTGTTCAATTTATGTTTTTC
Found at i:61808379 original size:50 final size:50
Alignment explanation
Indices: 61808314--61808411 Score: 119
Period size: 50 Copynumber: 2.0 Consensus size: 50
61808304 TGTTTTAATT
* * * *
61808314 TCAACTCATATTGCGA-GAGGTGAGTTGAGCCTC-GGGTCACATGCCGAGAG
1 TCAACTCATACTGCGAGGA-ATGAGTTGA-ACTCAGGATCACATGCCGAGAG
*
61808364 TCAATTCATACTGCGAGGAATGAGTTGAACTCAGGATCACATGCCGAG
1 TCAACTCATACTGCGAGGAATGAGTTGAACTCAGGATCACATGCCGAG
61808412 TAAGAATAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
49 3 0.07
50 36 0.88
51 2 0.05
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (50 bp):
TCAACTCATACTGCGAGGAATGAGTTGAACTCAGGATCACATGCCGAGAG
Found at i:61809668 original size:11 final size:12
Alignment explanation
Indices: 61809636--61809668 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
61809626 ATTCCCCTCT
61809636 CTTCTCT-TTCC
1 CTTCTCTCTTCC
61809647 CTTCTCTCTTCC
1 CTTCTCTCTTCC
61809659 C-TCTCTCTTC
1 CTTCTCTCTTC
61809669 TTTTTTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (12 bp):
CTTCTCTCTTCC
Found at i:61810166 original size:3 final size:3
Alignment explanation
Indices: 61810132--61810197 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
61810122 AATATCCTTG
* * * *
61810132 TTA TTT TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
61810178 TTA GTA TATA TTT TTA TTA T
1 TTA TTA T-TA TTA TTA TTA T
61810198 GTACGTGTAT
Statistics
Matches: 49, Mismatches: 12, Indels: 4
0.75 0.18 0.06
Matches are distributed among these distances:
3 43 0.88
4 6 0.12
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:61810194 original size:23 final size:22
Alignment explanation
Indices: 61810139--61810200 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
61810129 TTGTTATTTT
*
61810139 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
61810160 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
61810182 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
61810201 CGTGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:61810207 original size:23 final size:23
Alignment explanation
Indices: 61810139--61810208 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 23
61810129 TTGTTATTTT
* *
61810139 TATTAGTATTAT-TAGTATTACTA
1 TATTATTATTATGTAGTAGTA-TA
*
61810162 TTATTATTATTATGTATTAGTATA
1 -TATTATTATTATGTAGTAGTATA
*
61810186 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
61810209 CATATATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
23 19 0.49
24 14 0.36
25 6 0.15
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.56
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:61810310 original size:3 final size:3
Alignment explanation
Indices: 61810297--61810332 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
61810287 TATTCCAATG
*
61810297 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
61810333 GTTTATGCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:61813694 original size:22 final size:20
Alignment explanation
Indices: 61813654--61813694 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
61813644 AGTCCTATTA
*
61813654 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
61813674 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
61813695 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:61816017 original size:25 final size:23
Alignment explanation
Indices: 61815965--61816019 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
61815955 TATAAATAGT
61815965 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
61815988 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
61816013 AATAGTG
1 AATAGTG
61816020 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:61816099 original size:26 final size:26
Alignment explanation
Indices: 61816060--61816125 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
61816050 TAATATATAC
* *
61816060 ATATGTATAAAATAGA-TATAAAAAAA
1 ATATGTACATAATAGAGTAT-AAAAAA
* *
61816086 ATATGTACATAATATAGTGTAAAAAA
1 ATATGTACATAATAGAGTATAAAAAA
**
61816112 ATACATACATAATA
1 ATATGTACATAATA
61816126 TAATTAAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
26 31 0.94
27 2 0.06
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.29
Consensus pattern (26 bp):
ATATGTACATAATAGAGTATAAAAAA
Done.