Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 188 of 352
Found at i:61816101 original size:22 final size:22
Alignment explanation
Indices: 61816075--61816150 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
61816065 TATAAAATAG
*
61816075 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
*
61816097 ATATAGTGTAAAAAAATACATACATA
1 ATATA----AAAAAAATATATACATA
**
61816123 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
61816145 AGATAA
1 ATATAA
61816151 CATGTAGAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
22 24 0.55
26 20 0.45
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:61816126 original size:26 final size:25
Alignment explanation
Indices: 61816080--61816144 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 25
61816070 AATAGATATA
** *
61816080 AAAAAAATATGTACATAATATAGTGT
1 AAAAAAATACATACATAATATAAT-T
61816106 AAAAAAATACATACATAATATAATT
1 AAAAAAATACATACATAATATAATT
*
61816131 AAAATATATACATA
1 AAAA-AAATACATA
61816145 AGATAACATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 5 0.15
26 29 0.85
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.29
Consensus pattern (25 bp):
AAAAAAATACATACATAATATAATT
Found at i:61816196 original size:25 final size:24
Alignment explanation
Indices: 61816168--61816299 Score: 119
Period size: 23 Copynumber: 5.6 Consensus size: 24
61816158 AAAAAAAAAT
*
61816168 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATT-AAG
* *
61816193 ATATATACATAAAATAGTA-TAAT
1 ATATATACATAATATAGTATTAAG
* * *
61816216 ATATATACGTAATATAGAATTTAG
1 ATATATACATAATATAGTATTAAG
* * *
61816240 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATATAGTATTAAG
*
61816262 AATATATACATAATATAATATTAAG
1 -ATATATACATAATATAGTATTAAG
*
61816287 AAATATA-ATAATA
1 ATATATACATAATA
61816300 ACAAAAAAAA
Statistics
Matches: 86, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
22 2 0.02
23 39 0.45
24 25 0.29
25 20 0.23
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (24 bp):
ATATATACATAATATAGTATTAAG
Found at i:61816821 original size:30 final size:30
Alignment explanation
Indices: 61816785--61816912 Score: 229
Period size: 30 Copynumber: 4.3 Consensus size: 30
61816775 AGGTACAAGT
*
61816785 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
61816815 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
61816845 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
61816875 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
61816905 GGTGGTGG
1 GGTGGTGG
61816913 CAAAGGCTAG
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 96 1.00
ACGTcount: A:0.18, C:0.06, G:0.51, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:61819662 original size:16 final size:17
Alignment explanation
Indices: 61819631--61819663 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
61819621 TTCATAAGTA
61819631 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
61819648 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
61819664 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:61820008 original size:46 final size:46
Alignment explanation
Indices: 61819943--61820530 Score: 822
Period size: 46 Copynumber: 12.8 Consensus size: 46
61819933 TAATCTTTGA
* * * * * * *
61819943 CATGATGCCATAGTGTCTTTTAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* * * *** *
61819989 TAGGTTGCCATGGTATCTTTAAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** ** *
61820035 TACATTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTC-TCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT-AT
* *
61820080 CATGTTGCCATGGTATCTTTCAATCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
61820126 CCTATTGCCATGGCATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
61820172 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
61820218 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
61820264 CATGTTGCCATGGTCTCTTTCAGCCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
61820310 CATGTTGCCATGGTGTATTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
61820356 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTGATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
61820402 CTTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
61820448 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
61820494 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACAC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
61820531 TTTTTGATAC
Statistics
Matches: 492, Mismatches: 46, Indels: 8
0.90 0.08 0.01
Matches are distributed among these distances:
44 1 0.00
45 41 0.08
46 449 0.91
47 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:61822793 original size:23 final size:22
Alignment explanation
Indices: 61822742--61822793 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
61822732 CCTCGTCTTT
*
61822742 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
61822764 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
61822787 TTCTTTT
1 TTCTTTT
61822794 TCAATTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:61822802 original size:12 final size:12
Alignment explanation
Indices: 61822751--61822806 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
61822741 TTTCTTTTGT
61822751 TTCTTTTTCTAAC
1 TTCTTTTTC-AAC
* *
61822764 -TCATTTTC-TC
1 TTCTTTTTCAAC
61822774 TTCTTTCTTCAAC
1 TTCTTT-TTCAAC
*
61822787 TTCTTTTTCAAT
1 TTCTTTTTCAAC
61822799 TTCTTTTT
1 TTCTTTTT
61822807 GTTTACATTC
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.03
11 4 0.11
12 23 0.66
13 7 0.20
ACGTcount: A:0.12, C:0.23, G:0.00, T:0.64
Consensus pattern (12 bp):
TTCTTTTTCAAC
Found at i:61831620 original size:31 final size:30
Alignment explanation
Indices: 61831562--61831621 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
61831552 ATGCCTTGAA
** *
61831562 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGAAATCGAATTTTT
61831592 AATATTTACAAAAAAGAGAAATCGAATTTT
1 AATATTTAC-AAAAAGAGAAATCGAATTTT
61831622 GAAAATAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 9 0.35
31 17 0.65
ACGTcount: A:0.48, C:0.08, G:0.10, T:0.33
Consensus pattern (30 bp):
AATATTTACAAAAAGAGAAATCGAATTTTT
Found at i:61835223 original size:45 final size:45
Alignment explanation
Indices: 61835171--61835256 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
61835161 TATGTAATTT
61835171 GAACTCATTGAGTTGTGGTCTGAA-TTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGGTCT-AAGTTCATGATATATGTGACATCC
*
61835216 GAACTCATTGAGTTGTGGTCTAAGTTCGTGATATATGTGAC
1 GAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGAC
61835257 CCATGTTTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
44 2 0.05
45 37 0.95
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATCC
Found at i:61836400 original size:42 final size:42
Alignment explanation
Indices: 61836353--61836434 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
61836343 AGAAATTCTC
61836353 CACACGGT-TAGACACATGGGCATGTG-TCTAGCCCATGTGTAA
1 CACACGGTCT-GACACATGGGCATGTGATCT-GCCCATGTGTAA
* * *
61836395 CACACGGTCTGCCCCATGGGCATGTGATCTGGCCATGTGT
1 CACACGGTCTGACACATGGGCATGTGATCTGCCCATGTGT
61836435 CCCCTGCACC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 31 0.89
43 4 0.11
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (42 bp):
CACACGGTCTGACACATGGGCATGTGATCTGCCCATGTGTAA
Found at i:61839956 original size:48 final size:48
Alignment explanation
Indices: 61839743--61839973 Score: 188
Period size: 48 Copynumber: 4.8 Consensus size: 48
61839733 GGGTGTAATG
* * * * * *
61839743 CCGATGCCATGTCCCAGACATGGTCATACACTGGCTCATCCATCAAGT-
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGACACCTCTAT-AAGTC
** *
61839791 -CGATGCCATGTCCTAGACATGGTCTTACACTGAC-TGTC-A-AAATC
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGACACCTCTATAAGTC
* * ** *
61839835 GAGGCCGATGCCATGTCCCT-GACATGGTCTTACACT-AGCTCTCACATATCTGTG
1 ----CCGATGCCATGT-CCTAGACATGGTCTTACACTGA-CAC-CTC-TATAAGTC
* *
61839889 CCGATGCCATGTCCCAGACATGGTCTTACATTGACACCTCTATAAGTC
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGACACCTCTATAAGTC
61839937 CCGATGCCATGTCCTAGACATGGTCTTACACTGACAC
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGACAC
61839974 ATCTCGTAGC
Statistics
Matches: 146, Mismatches: 22, Indels: 30
0.74 0.11 0.15
Matches are distributed among these distances:
43 3 0.02
45 1 0.01
46 2 0.01
47 31 0.21
48 41 0.28
49 32 0.22
50 32 0.22
51 2 0.01
53 1 0.01
54 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCTAGACATGGTCTTACACTGACACCTCTATAAGTC
Found at i:61840087 original size:47 final size:47
Alignment explanation
Indices: 61839741--61840106 Score: 247
Period size: 47 Copynumber: 7.7 Consensus size: 47
61839731 TAGGGTGTAA
* *
61839741 TGCCGATGCCATGTCCCAGACATGGTCATACACTGGCTCATCCATCAA-G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT--TTCAT-AATG
* * * *
61839790 T--CGATGCCATGTCCTAGACATGGTCTTACACTGACTGTCAAAATCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAAT-G
* * * * *
61839836 AGGCCGATGCCATGTCCCTGACATGGTCTTACACTAGCTCTCACATATCTG
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-TCATA-ATG
* * **
61839887 TGCCGATGCCATGTCCCAGACATGGTCTTACATTGACACCTCTATAA-G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TTTC-ATAATG
* * * * *
61839935 TCCCGATGCCATGTCCTAGACATGGTCTTACACTGAC--ACAT-CTCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAAT-G
* *
61839980 TAGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTC-TCAA--
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T--TCAT-AATG
* ** *
61840027 TACTAATGCCATGTCCCAGACATGGTCTTACATTGGCTTTCATAATG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAATG
61840074 TGGCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
61840107 AGCATACAAA
Statistics
Matches: 247, Mismatches: 44, Indels: 55
0.71 0.13 0.16
Matches are distributed among these distances:
44 15 0.06
45 22 0.09
46 21 0.09
47 63 0.26
48 52 0.21
49 34 0.14
50 35 0.14
51 4 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAATG
Found at i:61845105 original size:42 final size:42
Alignment explanation
Indices: 61845035--61845137 Score: 145
Period size: 42 Copynumber: 2.5 Consensus size: 42
61845025 ACACCAATAA
* * *
61845035 CCCAGTTATGGTCTTACACGAAATCTCATATTGATGCCATAT
1 CCCAGATATGGTCTTACACGAAACCTCATATAGATGCCATAT
*
61845077 CCCAGATATGGTCTTATAC-AAAGCCTCATATAGATGCCATAT
1 CCCAGATATGGTCTTACACGAAA-CCTCATATAGATGCCATAT
*
61845119 CCCAGATATGTTCTTACAC
1 CCCAGATATGGTCTTACAC
61845138 ATAGTCTTAG
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 3 0.06
42 51 0.94
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
CCCAGATATGGTCTTACACGAAACCTCATATAGATGCCATAT
Found at i:61848471 original size:22 final size:22
Alignment explanation
Indices: 61848428--61848473 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
61848418 CGAAAATGAT
* *
61848428 TAAAATTAATCAATATTTATTA
1 TAAAATTAATCAAAATTCATTA
* *
61848450 TAAAATTATTTAAAATTCATTA
1 TAAAATTAATCAAAATTCATTA
61848472 TA
1 TA
61848474 TTAATAATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (22 bp):
TAAAATTAATCAAAATTCATTA
Found at i:61856249 original size:16 final size:16
Alignment explanation
Indices: 61856228--61856260 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
61856218 CTGTAACACC
*
61856228 CCAAAAATCCTGAAAT
1 CCAAAAATCCCGAAAT
61856244 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
61856260 C
1 C
61856261 TTGAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.30, G:0.06, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:61857637 original size:19 final size:19
Alignment explanation
Indices: 61857605--61857651 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
61857595 ACTTGGGTTG
* * *
61857605 AGAATTGGCCAAATGGGCC
1 AGAATGGGCTAAATGCGCC
61857624 AGAATGGGCTAAATGCGCC
1 AGAATGGGCTAAATGCGCC
*
61857643 TG-ATGGGCT
1 AGAATGGGCT
61857652 GTTGGGCCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.28, C:0.19, G:0.34, T:0.19
Consensus pattern (19 bp):
AGAATGGGCTAAATGCGCC
Found at i:61857768 original size:29 final size:28
Alignment explanation
Indices: 61857720--61857838 Score: 98
Period size: 29 Copynumber: 4.2 Consensus size: 28
61857710 GTGAGAATGA
*
61857720 ATAT-AATATGATTTAGGCCTAATGGGCC
1 ATATGAATATGATTGA-GCCTAATGGGCC
*
61857748 ATATGAATATGAATTGAGCCTAGTGGGCC
1 ATATGAATATG-ATTGAGCCTAATGGGCC
* * *
61857777 ATAAGAATATGAACTGGGCC-AGATGGGCC
1 ATATGAATATG-ATTGAGCCTA-ATGGGCC
* * * * *
61857806 ATTTGAATAAGATTGGGCCTAGTGGGTC
1 ATATGAATATGATTGAGCCTAATGGGCC
61857834 ATATG
1 ATATG
61857839 CATGTATCTA
Statistics
Matches: 74, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
28 21 0.28
29 49 0.66
30 4 0.05
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATGAATATGATTGAGCCTAATGGGCC
Found at i:61857787 original size:58 final size:57
Alignment explanation
Indices: 61857724--61857836 Score: 138
Period size: 58 Copynumber: 2.0 Consensus size: 57
61857714 GAATGAATAT
** *
61857724 AATATGATTTAGGCCTA-ATGGGCCATATGAATATGAATTGAGCCTAGTGGGCCATAAG
1 AATATGAACTAGGCC-AGATGGGCCATATGAATAAG-ATTGAGCCTAGTGGGCCATAAG
* * * *
61857782 AATATGAACTGGGCCAGATGGGCCATTTGAATAAGATTGGGCCTAGTGGGTCATA
1 AATATGAACTAGGCCAGATGGGCCATATGAATAAGATTGAGCCTAGTGGGCCATA
61857837 TGCATGTATC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
57 19 0.40
58 28 0.60
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (57 bp):
AATATGAACTAGGCCAGATGGGCCATATGAATAAGATTGAGCCTAGTGGGCCATAAG
Found at i:61861488 original size:17 final size:18
Alignment explanation
Indices: 61861454--61861491 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
61861444 TTGTAATAAA
* *
61861454 TTATTTAATATTTCAAAT
1 TTATTTAATATATAAAAT
61861472 TTATTTAATA-ATAAAAT
1 TTATTTAATATATAAAAT
61861489 TTA
1 TTA
61861492 AAAACAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
TTATTTAATATATAAAAT
Found at i:61861566 original size:15 final size:15
Alignment explanation
Indices: 61861546--61861602 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
61861536 ATACAATATT
61861546 AATATTTTAATAATA
1 AATATTTTAATAATA
*
61861561 AATATTTATTAAAATTATA
1 AATA-TT-TT--AATAATA
*
61861580 AATATATTAATAATA
1 AATATTTTAATAATA
*
61861595 AATGTTTT
1 AATATTTT
61861603 GTGGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:61862715 original size:7 final size:7
Alignment explanation
Indices: 61862703--61862729 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
61862693 ATATAATAAC
61862703 AAATTTT
1 AAATTTT
61862710 AAATTTT
1 AAATTTT
61862717 AAATTTT
1 AAATTTT
61862724 AAATTT
1 AAATTT
61862730 CAATAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
AAATTTT
Found at i:61868792 original size:45 final size:46
Alignment explanation
Indices: 61868695--61868803 Score: 141
Period size: 45 Copynumber: 2.3 Consensus size: 46
61868685 AGCTTAAGAT
*
61868695 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAG-GTGAATATGTGATAAGGC
*
61868742 CGAATGGCCAATGTGAT-ATATGTGTAA-GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGGTGAATATGTGATAAGGC
* *
61868787 TGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
61868804 AAAGTGTGCA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
45 26 0.46
46 6 0.11
47 24 0.43
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (46 bp):
CGAATGGCCAATGTGATGAATGTGAAAGGTGAATATGTGATAAGGC
Found at i:61868929 original size:39 final size:40
Alignment explanation
Indices: 61868874--61868958 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
61868864 AAATGAATTG
* * * *
61868874 TGCTGAGATTGCATCCGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
* *
61868913 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
61868953 TGCTGG
1 TGCTGG
61868959 TGAATTAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.18, C:0.22, G:0.32, T:0.28
Consensus pattern (40 bp):
TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:61873364 original size:28 final size:27
Alignment explanation
Indices: 61873302--61873408 Score: 133
Period size: 27 Copynumber: 3.9 Consensus size: 27
61873292 TTTTACCCTA
*
61873302 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
*
61873329 TAGGGGTATTTCGGTAATTTTTACAAAT
1 CAGGGGTATTTCGGTAA-TTTTACAAAT
* * *
61873357 CAGAGGTATTTCGGTAACTTTACAAAC
1 CAGGGGTATTTCGGTAATTTTACAAAT
* **
61873384 CGGGGGTATTTTAGTAATTTTACAA
1 CAGGGGTATTTCGGTAATTTTACAA
61873409 GCTGAGGTCT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 43 0.63
28 25 0.37
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTTTACAAAT
Found at i:61874566 original size:6 final size:6
Alignment explanation
Indices: 61874555--61874589 Score: 61
Period size: 6 Copynumber: 5.7 Consensus size: 6
61874545 ATCGAACACT
61874555 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA TAGAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA -AGAA
61874590 TACTTGAGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 24 0.86
7 4 0.14
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (6 bp):
AGAAAA
Found at i:61877544 original size:35 final size:35
Alignment explanation
Indices: 61877459--61877526 Score: 111
Period size: 35 Copynumber: 1.9 Consensus size: 35
61877449 ATCTTTCAAG
*
61877459 GTGTCACCCTGAAA-GACCTATATACCATTTACACT
1 GTGTCA-CCTCAAAGGACCTATATACCATTTACACT
61877494 GTGTCACCTCAAAGGACCTATATACCATTTACA
1 GTGTCACCTCAAAGGACCTATATACCATTTACA
61877527 TGGTGTTTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 6 0.19
35 25 0.81
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (35 bp):
GTGTCACCTCAAAGGACCTATATACCATTTACACT
Found at i:61884299 original size:33 final size:34
Alignment explanation
Indices: 61884230--61884299 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
61884220 GTTAGGGCTT
*
61884230 AGCCCATTTCAATAACAGTAGCAGTTTGGGCCTA
1 AGCCCATTTCAATAACAGTAGCAGTTGGGGCCTA
* *
61884264 AGCCCATTTCAGTAACAGTATCAG-TGGGGCCTA
1 AGCCCATTTCAATAACAGTAGCAGTTGGGGCCTA
61884297 AGC
1 AGC
61884300 TAGTTACAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 11 0.33
34 22 0.67
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (34 bp):
AGCCCATTTCAATAACAGTAGCAGTTGGGGCCTA
Found at i:61888521 original size:42 final size:42
Alignment explanation
Indices: 61888461--61888726 Score: 281
Period size: 42 Copynumber: 6.4 Consensus size: 42
61888451 CCCAATTTGA
* * *
61888461 GATTTACGTGTATGACCATGTCTAGGACATCGGCATCATATTT
1 GATTT-CGTGTAAGACCATGTCTGGGACATCGGCATCATATCT
* * *
61888504 GATTTCATGTAAGACCATGTCTGGGACATCGGCATCGTATTT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCATATCT
*
61888546 GATTTCGTGTAAGACCATGTCTAGGACATCGGCATCATATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCATATCT
* * * ** *
61888588 AATTTCGTGTAAGACGATGTCTGGGACATCGACATTGTTTCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCATATCT
*
61888630 G----CGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCATATCT
* * * **
61888668 AATTTCGTATAAGACCCTGTCTGGGACAGAGGCATCGATA-CT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATC-ATATCT
* *
61888710 GAATTACATGTAAGACC
1 G-ATTTCGTGTAAGACC
61888727 TCATCTAGAA
Statistics
Matches: 187, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
38 33 0.18
42 135 0.72
43 19 0.10
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCATATCT
Found at i:61888565 original size:84 final size:84
Alignment explanation
Indices: 61888461--61888704 Score: 318
Period size: 84 Copynumber: 2.9 Consensus size: 84
61888451 CCCAATTTGA
* * * *
61888461 GATTTACGTGTATGACCATGTCTAGGACATCGGCATCATATTTGATTTCATGTAAGACCATGTCT
1 GATTT-CGTGTAAGACCATGTCTAGGACATCGGCATCATATCTAATTTCGTGTAAGACCATGTCT
61888526 GGGACATCGGCATCGTATT-T
65 GGGACATCGGCATCGT-TTCT
*
61888546 GATTTCGTGTAAGACCATGTCTAGGACATCGGCATCATATCTAATTTCGTGTAAGACGATGTCTG
1 GATTTCGTGTAAGACCATGTCTAGGACATCGGCATCATATCTAATTTCGTGTAAGACCATGTCTG
* *
61888611 GGACATCGACATTGTTTCT
66 GGACATCGGCATCGTTTCT
* * * *
61888630 G----CGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTAATTTCGTATAAGACCCTGTCTG
1 GATTTCGTGTAAGACCATGTCTAGGACATCGGCATCATATCTAATTTCGTGTAAGACCATGTCTG
**
61888691 GGACAGAGGCATCG
66 GGACATCGGCATCG
61888705 ATACTGAATT
Statistics
Matches: 142, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
80 65 0.46
83 2 0.01
84 70 0.49
85 5 0.04
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (84 bp):
GATTTCGTGTAAGACCATGTCTAGGACATCGGCATCATATCTAATTTCGTGTAAGACCATGTCTG
GGACATCGGCATCGTTTCT
Found at i:61903885 original size:40 final size:40
Alignment explanation
Indices: 61903703--61903870 Score: 259
Period size: 40 Copynumber: 4.2 Consensus size: 40
61903693 ATATATTATA
*
61903703 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTCAAATCCCACAGGCTTCGTGCTGGTAATG
* *
61903743 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTATTG
1 TATATCCGGGTCAAATCCCACAGGCTTCGTGCTGGTAATG
61903783 TATATCCGGGTCAAATCCCACAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTCAAATCCCACAGGCTTCGTGCTGGTAATG
* * * *
61903823 TATATCCGGGTTAAATCTCACAGGCTTAGTACTGGT-AT-
1 TATATCCGGGTCAAATCCCACAGGCTTCGTGCTGGTAATG
61903861 TATATCCGGG
1 TATATCCGGG
61903871 CTTAAAGTTC
Statistics
Matches: 121, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 10 0.08
39 2 0.02
40 109 0.90
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (40 bp):
TATATCCGGGTCAAATCCCACAGGCTTCGTGCTGGTAATG
Found at i:61905328 original size:358 final size:358
Alignment explanation
Indices: 61904671--61905386 Score: 1360
Period size: 358 Copynumber: 2.0 Consensus size: 358
61904661 GATTGGGCCG
*
61904671 GTTGCTTATAGATTGACTTTGCCACTCAAACTTGAAAATATTCACGATCTCGATGCTCTATCGTT
1 GTTGCTTATAGATTGACTTTGCCACTCAAACTTGAAAATATTCACGATCTCGATGCTCCATCGTT
** *
61904736 ATAGATCTGATCCCTCACATGTATTAGTCTGACAGAAATTGAAATTTAGCCTGATTTGAGTTATG
66 ATAGATCCAATCCCTCACATGTATTAGTCCGACAGAAATTGAAATTTAGCCTGATTTGAGTTATG
*
61904801 AGGAAGAACCGGTTTGTATTTTGGCTCATAAGGTGAAAGAACTATGGAATAAGAAAATTTTGTTA
131 AGGAAGAACCGGTTTGTATTTTGGCTCATAAGGTGAAAGAACTATGGAATAAGAAAATTTCGTTA
61904866 GTTAAAGTGTTGTGGCTCAAACACGGAGTTGAGGAAGTGAGTTGGGAGCTTGAAGATTCAACGAA
196 GTTAAAGTGTTGTGGCTCAAACACGGAGTTGAGGAAGTGAGTTGGGAGCTTGAAGATTCAACGAA
61904931 AGAACGTTACCCTAACCTTTTCGATGGTAAGATTTTCGGGGACAAAAATCCCTAAGGGGGGAGAA
261 AGAACGTTACCCTAACCTTTTCGATGGTAAGATTTTCGGGGACAAAAATCCCTAAGGGGGGAGAA
61904996 TTGTGATAGCCCTATTTTAACCCTAGTCAAAAA
326 TTGTGATAGCCCTATTTTAACCCTAGTCAAAAA
*
61905029 GTTGCTTATAGATTGACTTTGCCACTCAAACTTGAAAATATTCATGATCTCGATGCTCCATCGTT
1 GTTGCTTATAGATTGACTTTGCCACTCAAACTTGAAAATATTCACGATCTCGATGCTCCATCGTT
61905094 ATAGATCCAATCCCTCACATGTATTAGTCCGACAGAAATTGAAATTTAGCCTGATTTGAGTTATG
66 ATAGATCCAATCCCTCACATGTATTAGTCCGACAGAAATTGAAATTTAGCCTGATTTGAGTTATG
61905159 AGGAAGAACCGGTTTGTATTTTGGCTCATAAGGTGAAAGAACTATGGAATAAGAAAATTTCGTTA
131 AGGAAGAACCGGTTTGTATTTTGGCTCATAAGGTGAAAGAACTATGGAATAAGAAAATTTCGTTA
61905224 GTTAAAGTGTTGTGGCTCAAACACGGAGTTGAGGAAGTGAGTTGGGAGCTTGAAGATTCAACGAA
196 GTTAAAGTGTTGTGGCTCAAACACGGAGTTGAGGAAGTGAGTTGGGAGCTTGAAGATTCAACGAA
* *
61905289 AGAACGTTACCCTAACCTTTTCGCTGGTAAGATTTTCGGGGACGAAAATCCCTAAGGGGGGAGAA
261 AGAACGTTACCCTAACCTTTTCGATGGTAAGATTTTCGGGGACAAAAATCCCTAAGGGGGGAGAA
61905354 TTGTGATAGCCCTATTTTAACCCTAGTCAAAAA
326 TTGTGATAGCCCTATTTTAACCCTAGTCAAAAA
61905387 TTGGTTTCGG
Statistics
Matches: 350, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
358 350 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (358 bp):
GTTGCTTATAGATTGACTTTGCCACTCAAACTTGAAAATATTCACGATCTCGATGCTCCATCGTT
ATAGATCCAATCCCTCACATGTATTAGTCCGACAGAAATTGAAATTTAGCCTGATTTGAGTTATG
AGGAAGAACCGGTTTGTATTTTGGCTCATAAGGTGAAAGAACTATGGAATAAGAAAATTTCGTTA
GTTAAAGTGTTGTGGCTCAAACACGGAGTTGAGGAAGTGAGTTGGGAGCTTGAAGATTCAACGAA
AGAACGTTACCCTAACCTTTTCGATGGTAAGATTTTCGGGGACAAAAATCCCTAAGGGGGGAGAA
TTGTGATAGCCCTATTTTAACCCTAGTCAAAAA
Found at i:61912890 original size:42 final size:42
Alignment explanation
Indices: 61912828--61913064 Score: 321
Period size: 42 Copynumber: 5.6 Consensus size: 42
61912818 CTCGATTCAA
*
61912828 GATTTACGTGTAAGACCATGTCTGGGACATCGGCATCATATCT
1 GATTT-CGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * *
61912871 GATTTCGTGTAAGATCATGTCTGGGACATCAGCATTGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * *
61912913 GATTTCGTGTAAGACCATGTCTAGGACATCAGTATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * * *
61912955 GATTTCTTGAAAGACCATGTCTAGGACATTGGCATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * *
61912997 GATTTTGTGTAAGACCATGTATGGGACATTGGCATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* *
61913039 GATTTCGTGTAAGACCCTGTTTGGGA
1 GATTTCGTGTAAGACCATGTCTGGGA
61913065 TAGAGGCATT
Statistics
Matches: 173, Mismatches: 21, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
42 168 0.97
43 5 0.03
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
Found at i:61913073 original size:84 final size:84
Alignment explanation
Indices: 61912791--61913073 Score: 311
Period size: 84 Copynumber: 3.3 Consensus size: 84
61912781 CTGAGACATA
** *
61912791 GTGTAAGACTGTGTCTGGGACACAGGTC-TCG-ATTCAAGATTTACGTGTAAGACCATGTCTGGG
1 GTGTAAGACCATGTCTGGGACACAGG-CATCGTA-TC-TGATTT-CGTGTAAGACCATGTCTGGG
*
61912854 ACATCGGCATCATATCTGATTTC
62 ACATCGGCATCGTATCTGATTTC
* * *
61912877 GTGTAAGATCATGTCTGGGACATCA-GCATTGTATCTGATTTCGTGTAAGACCATGTCTAGGACA
1 GTGTAAGACCATGTCTGGGACA-CAGGCATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACA
* *
61912941 TCAGTATCGTATCTGATTTC
65 TCGGCATCGTATCTGATTTC
* * * ** * *
61912961 TTGAAAGACCATGTCTAGGACATTGGCATCGTATCTGATTTTGTGTAAGACCATGTATGGGACAT
1 GTGTAAGACCATGTCTGGGACACAGGCATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACAT
*
61913026 TGGCATCGTATCTGATTTC
66 CGGCATCGTATCTGATTTC
* * * *
61913045 GTGTAAGACCCTGTTTGGGATAGAGGCAT
1 GTGTAAGACCATGTCTGGGACACAGGCAT
61913074 TGATACTGAA
Statistics
Matches: 163, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
84 130 0.80
85 6 0.04
86 24 0.15
87 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (84 bp):
GTGTAAGACCATGTCTGGGACACAGGCATCGTATCTGATTTCGTGTAAGACCATGTCTGGGACAT
CGGCATCGTATCTGATTTC
Found at i:61915994 original size:20 final size:20
Alignment explanation
Indices: 61915969--61916007 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
61915959 GACTAAAATG
61915969 AAAAATCGTAAAATTTGATA
1 AAAAATCGTAAAATTTGATA
**
61915989 AAAAATTTTAAAATTTGAT
1 AAAAATCGTAAAATTTGAT
61916008 GAATACATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (20 bp):
AAAAATCGTAAAATTTGATA
Found at i:61919069 original size:27 final size:27
Alignment explanation
Indices: 61919010--61919071 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
61919000 TCGATTTGTA
* * * *
61919010 AAAATGATCGTAATGCCCCTGTAGGGT
1 AAAATGACCGTAATACCCCTATAGAGT
*
61919037 AAAATGACCGTAATACCCCTATATAGT
1 AAAATGACCGTAATACCCCTATAGAGT
*
61919064 AGAATGAC
1 AAAATGAC
61919072 GATTATGCCT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
AAAATGACCGTAATACCCCTATAGAGT
Found at i:61941530 original size:40 final size:40
Alignment explanation
Indices: 61941446--61941629 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
61941436 TTGAATGCTG
* * * *
61941446 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
61941485 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * **
61941526 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACCAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
61941566 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
61941606 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
61941630 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 110 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:61941650 original size:39 final size:39
Alignment explanation
Indices: 61941526--61941676 Score: 117
Period size: 40 Copynumber: 3.8 Consensus size: 39
61941516 AGTTATTAAT
* ** * * *
61941526 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATAC-CAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAA
** *
61941566 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
61941606 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
61941646 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
61941677 GAGCTATATC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 29 0.31
40 64 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:61949377 original size:40 final size:40
Alignment explanation
Indices: 61949293--61949476 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
61949283 TTGAATGCTG
* * * *
61949293 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
61949332 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
61949373 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
61949413 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
61949453 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
61949477 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:61949430 original size:80 final size:81
Alignment explanation
Indices: 61949293--61949473 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
61949283 TTGAATGCTG
* * *
61949293 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
61949357 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
61949373 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
61949434 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
61949453 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
61949474 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:61949497 original size:39 final size:38
Alignment explanation
Indices: 61949374--61949523 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
61949364 GTTATTAATT
* ** * *
61949374 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
61949414 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
61949453 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
61949493 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
61949524 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:61956832 original size:29 final size:28
Alignment explanation
Indices: 61956797--61956874 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
61956787 TCATGAGATT
61956797 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
61956827 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
61956854 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
61956875 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:61957027 original size:29 final size:29
Alignment explanation
Indices: 61956995--61957070 Score: 152
Period size: 29 Copynumber: 2.6 Consensus size: 29
61956985 GAACTTGAAA
61956995 TGCATGGCACTAAGTGTGTGAGTTTAAAG
1 TGCATGGCACTAAGTGTGTGAGTTTAAAG
61957024 TGCATGGCACTAAGTGTGTGAGTTTAAAG
1 TGCATGGCACTAAGTGTGTGAGTTTAAAG
61957053 TGCATGGCACTAAGTGTG
1 TGCATGGCACTAAGTGTG
61957071 CGTGGTTGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.30
Consensus pattern (29 bp):
TGCATGGCACTAAGTGTGTGAGTTTAAAG
Found at i:61957182 original size:202 final size:203
Alignment explanation
Indices: 61956796--61957182 Score: 632
Period size: 203 Copynumber: 1.9 Consensus size: 203
61956786 GTCATGAGAT
* * *
61956796 TGGCACTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTAAAGTACATGGCACT
1 TGGCACTAAGTGTGCGAGTTTAAAGTGCACAGCACTAAGTGTGCGAGTTTAAAGTACATGGCACT
* * *
61956861 AAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTAT
66 AAGTGTGCGCGGTTGATTACTAAACACTATGTGTGCGAACCCAATATATATTTTATATAAATTAT
* *
61956926 TTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTT
131 TTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTT
61956991 GAAATGCA
196 GAAATGCA
* ** * *
61956999 TGGCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGTGAGTTTAAAGTGCATGGCACT
1 TGGCACTAAGTGTGCGAGTTTAAAGTGCACAGCACTAAGTGTGCGAGTTTAAAGTACATGGCACT
* *
61957064 AAGTGTGCGTGGTTGATTACTAAACATTATGTGTGC-AACCCAATATATATTTTATATAAATTAT
66 AAGTGTGCGCGGTTGATTACTAAACACTATGTGTGCGAACCCAATATATATTTTATATAAATTAT
61957128 TTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
131 TTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
61957183 ACCTTGAGTT
Statistics
Matches: 169, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
202 80 0.47
203 89 0.53
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (203 bp):
TGGCACTAAGTGTGCGAGTTTAAAGTGCACAGCACTAAGTGTGCGAGTTTAAAGTACATGGCACT
AAGTGTGCGCGGTTGATTACTAAACACTATGTGTGCGAACCCAATATATATTTTATATAAATTAT
TTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTT
GAAATGCA
Found at i:61964727 original size:16 final size:15
Alignment explanation
Indices: 61964703--61964732 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
61964693 AACTGTTTTA
61964703 TTACAAATTTCACTC
1 TTACAAATTTCACTC
61964718 TTACATAATTTCACT
1 TTACA-AATTTCACT
61964733 TACTTCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:61965058 original size:50 final size:50
Alignment explanation
Indices: 61964993--61965222 Score: 212
Period size: 52 Copynumber: 4.5 Consensus size: 50
61964983 TCGGTACATG
* *
61964993 TAGTAGCCTACACTTAGTACGACACACGTGACTTAACGATCTGATACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACGATCTGATACACA
* * * * *
61965043 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTT-AA--CGATCTGATACACA
* * * *
61965095 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTG-TCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAAC-GATCTGATACACA
** * * * *
61965145 TAGTAGCCTGCACTTAGTACTACACATATGACCTAAAACCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CT-TAACGATCTGATACACA
* * *
61965197 TTGTAGCCTGCACATAGTATTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
61965223 TGTGTTCTCA
Statistics
Matches: 148, Mismatches: 24, Indels: 14
0.80 0.13 0.08
Matches are distributed among these distances:
49 2 0.01
50 69 0.47
51 2 0.01
52 74 0.50
53 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACGATCTGATACACA
Found at i:61965112 original size:52 final size:49
Alignment explanation
Indices: 61964993--61965170 Score: 214
Period size: 50 Copynumber: 3.5 Consensus size: 49
61964983 TCGGTACATG
* * * *
61964993 TAGTAGCCTACACTTAGTACGACACACGTGACTTAACGATCTGATACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAATG-TCTGGTACACA
* *
61965043 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTT-AA--TG-TCTGGTACACA
* * *
61965095 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAA-TGTCTGGTACACA
61965145 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
61965171 TATGACCTAA
Statistics
Matches: 111, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
49 2 0.02
50 65 0.59
51 2 0.02
52 41 0.37
53 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTTAATGTCTGGTACACA
Found at i:61968156 original size:15 final size:15
Alignment explanation
Indices: 61968138--61968166 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
61968128 ACCAGGATTA
61968138 AGAAATCCAAGATAG
1 AGAAATCCAAGATAG
61968153 AGAAATCCAAGATA
1 AGAAATCCAAGATA
61968167 CAATATCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
AGAAATCCAAGATAG
Found at i:61968325 original size:18 final size:18
Alignment explanation
Indices: 61968302--61968338 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
61968292 GATAATGTAC
61968302 CTTCCCCTATATATATAT
1 CTTCCCCTATATATATAT
61968320 CTTCCCCTATATATATAT
1 CTTCCCCTATATATATAT
61968338 C
1 C
61968339 GAATACAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (18 bp):
CTTCCCCTATATATATAT
Found at i:61970753 original size:16 final size:15
Alignment explanation
Indices: 61970729--61970758 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
61970719 AACTGTTTTA
61970729 TTACAAATTTCACTC
1 TTACAAATTTCACTC
61970744 TTACATAATTTCACT
1 TTACA-AATTTCACT
61970759 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:61972618 original size:29 final size:29
Alignment explanation
Indices: 61972585--61972676 Score: 114
Period size: 29 Copynumber: 3.2 Consensus size: 29
61972575 TGAATGTGAC
61972585 TGGGCCTAACGGGCCATATAAATTTGATT
1 TGGGCCTAACGGGCCATATAAATTTGATT
* * **
61972614 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATTTGATT
* *
61972643 TGGGCCTAAAGGGGCCATATGAATTTGA-T
1 TGGGCCT-AACGGGCCATATAAATTTGATT
61972672 TGGGC
1 TGGGC
61972677 ATAATGGCCA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
29 38 0.72
30 15 0.28
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
TGGGCCTAACGGGCCATATAAATTTGATT
Found at i:61972672 original size:30 final size:28
Alignment explanation
Indices: 61972572--61972676 Score: 104
Period size: 29 Copynumber: 3.6 Consensus size: 28
61972562 GTGAGCATGA
*
61972572 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAACGGGCC
* * *
61972600 ATATAAATTTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAACGGGCC
* *
61972629 ATAT-ACAGGTGATTTGGGCCTAAAGGGGCC
1 ATATGA-ATGTGA-TTGGGCCT-AACGGGCC
*
61972659 ATATGAATTTGATTGGGC
1 ATATGAATGTGATTGGGC
61972677 ATAATGGCCA
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
28 11 0.17
29 37 0.58
30 15 0.23
31 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAACGGGCC
Found at i:61972682 original size:58 final size:57
Alignment explanation
Indices: 61972585--61972695 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 57
61972575 TGAATGTGAC
*
61972585 TGGGCCTAACGGGCCATATAAATTTGATTTGGGCCTAATGGGCCA-TATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATTTGATTTGGGCATAAT-GGCCAGT-TACAGGTGATT
* *
61972643 TGGGCCTAAAGGGGCCATATGAATTTGA-TTGGGCATAATGGCCAGTTACAGGT
1 TGGGCCT-AACGGGCCATATAAATTTGATTTGGGCATAATGGCCAGTTACAGGT
61972696 ATGTGAATTT
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
57 12 0.25
58 18 0.38
59 18 0.38
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATTTGATTTGGGCATAATGGCCAGTTACAGGTGATT
Found at i:61975978 original size:8 final size:8
Alignment explanation
Indices: 61975965--61975995 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
61975955 ATCCGCAAAA
61975965 GCCGAAAT
1 GCCGAAAT
61975973 GCCGAAAT
1 GCCGAAAT
*
61975981 GCCGAAAA
1 GCCGAAAT
61975989 GCCGAAA
1 GCCGAAA
61975996 GTTAGGCTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.42, C:0.26, G:0.26, T:0.06
Consensus pattern (8 bp):
GCCGAAAT
Found at i:61976253 original size:29 final size:29
Alignment explanation
Indices: 61976210--61976284 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
61976200 CATGAATATG
*
61976210 AATGTGA-CTGGGCCTAACAGGCCAAATA
1 AATGTGATTTGGGCCTAACAGGCCAAATA
** *
61976238 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAACAGGCCAAATA
* *
61976267 CAGGTGATTTGGGCCTAA
1 AATGTGATTTGGGCCTAA
61976285 AGGGGCTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 7 0.17
29 33 0.82
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAACAGGCCAAATA
Found at i:61980367 original size:49 final size:49
Alignment explanation
Indices: 61980146--61980757 Score: 930
Period size: 49 Copynumber: 12.8 Consensus size: 49
61980136 CCCTTCGGGA
* * *
61980146 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCA-GC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCA-TTAGGC
* * *
61980193 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
61980240 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
61980287 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
61980334 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
61980383 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
61980432 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
61980479 CTTATCACATATATATACAATTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
61980528 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
61980577 CTTATCAC--ATATATACACTTTCACAATAATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
61980624 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
61980673 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
61980722 CTTATCAC--ATATATACACTTTCACATTCATCACATT
1 CTTATCACATATATATACACTTTCACATTCATCACATT
61980758 CCAATGAATA
Statistics
Matches: 530, Mismatches: 26, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
46 3 0.01
47 249 0.47
49 278 0.52
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:61980384 original size:96 final size:97
Alignment explanation
Indices: 61980146--61980757 Score: 940
Period size: 96 Copynumber: 6.4 Consensus size: 97
61980136 CCCTTCGGGA
* * * * * *
61980146 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCAGCCCTGTCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATA
61980208 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
* * *
61980240 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATA
61980302 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
61980334 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATATAT
* *
61980399 ACACTTTCACATTCATCACATTGGCCATTCGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61980432 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATATAT
* * *
61980495 ACAATTTCACATTCATCACATTGGCCATTCGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
61980528 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATA
* *
61980592 CACTTTCACAATAATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
61980624 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATATAT
* *
61980689 ACACTTTCACATTCATCACATTGGCCATTCGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
61980722 CTTATCAC--ATATATACACTTTCACATTCATCACATT
1 CTTATCACATATATATACACTTTCACATTCATCACATT
61980758 CCAATGAATA
Statistics
Matches: 480, Mismatches: 28, Indels: 18
0.91 0.05 0.03
Matches are distributed among these distances:
93 1 0.00
94 90 0.19
96 256 0.53
98 133 0.28
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (97 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATA
CACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:61980453 original size:145 final size:145
Alignment explanation
Indices: 61980146--61980756 Score: 1043
Period size: 145 Copynumber: 4.2 Consensus size: 145
61980136 CCCTTCGGGA
* * * * * * *
61980146 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCA-GCCCTGTCAC--ATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATATA
* *
61980208 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATC
65 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATC
* * *
61980271 ACATCGGCTATTAGGC
130 ACATTGGCCATTCGGC
61980287 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
61980352 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
61980417 CATTGGCCATTCGGC
131 CATTGGCCATTCGGC
61980432 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
61980497 AATTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
61980562 CATTGGCCATTCGGC
131 CATTGGCCATTCGGC
* *
61980577 CTTATCACATATATACACTTTCACAATAATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
61980642 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
61980707 CATTGGCCATTCGGC
131 CATTGGCCATTCGGC
61980722 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
61980757 TCCAATGAAT
Statistics
Matches: 447, Mismatches: 18, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
140 2 0.00
141 45 0.10
143 45 0.10
145 355 0.79
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (145 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
CATTGGCCATTCGGC
Found at i:61981693 original size:48 final size:48
Alignment explanation
Indices: 61981622--61981721 Score: 191
Period size: 48 Copynumber: 2.1 Consensus size: 48
61981612 ATCACTTAAA
61981622 ACTTACCTCGGAAGTGGTCGACGACTAGATATCCACGGCTATTTGTTT
1 ACTTACCTCGGAAGTGGTCGACGACTAGATATCCACGGCTATTTGTTT
*
61981670 ACTTACCTTGGAAGTGGTCGACGACTAGATATCCACGGCTATTTGTTT
1 ACTTACCTCGGAAGTGGTCGACGACTAGATATCCACGGCTATTTGTTT
61981718 ACTT
1 ACTT
61981722 TCTCTTTTCC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (48 bp):
ACTTACCTCGGAAGTGGTCGACGACTAGATATCCACGGCTATTTGTTT
Found at i:61985245 original size:29 final size:28
Alignment explanation
Indices: 61985172--61985246 Score: 96
Period size: 30 Copynumber: 2.6 Consensus size: 28
61985162 GCGAGCACGA
* *
61985172 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAAAGGGCC
*
61985200 ATATAAATGTGATTTGGGCCTAAAAGGGCC
1 ATATGAATGTGA-TTGGGCCT-AAAGGGCC
*
61985230 ATATGAATATGATTGGG
1 ATATGAATGTGATTGGG
61985247 ATGGCCAGAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
28 11 0.28
29 12 0.30
30 17 0.43
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAAAGGGCC
Found at i:61986308 original size:19 final size:19
Alignment explanation
Indices: 61986267--61986313 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
61986257 TCGTAACTGA
*
61986267 AAGGTTTTTTTAGTTAATT
1 AAGGTTTTTTTAGTTAATG
*
61986286 AAGGTTTCTTTTATTTAA-G
1 AAGGTTT-TTTTAGTTAATG
61986305 AAGGGTTTT
1 AA-GGTTTT
61986314 CAATGAAAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.26, C:0.02, G:0.19, T:0.53
Consensus pattern (19 bp):
AAGGTTTTTTTAGTTAATG
Found at i:61986557 original size:38 final size:37
Alignment explanation
Indices: 61986473--61986557 Score: 91
Period size: 38 Copynumber: 2.2 Consensus size: 37
61986463 TAATAGCCAG
* * * *
61986473 CACACAGTACTACACATGTGACCTAACTATCTGGTACA
1 CACATAGTACTACACACGTGACCTAACCATCT-GTAAA
*
61986511 CACTTAGTACTACACACGTGACCTAAAACCATCT-TAAA
1 CACATAGTACTACACACGTGACCT--AACCATCTGTAAA
61986549 CACATAGTA
1 CACATAGTA
61986558 GCCTGCACAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
38 32 0.82
40 7 0.18
ACGTcount: A:0.38, C:0.28, G:0.11, T:0.24
Consensus pattern (37 bp):
CACATAGTACTACACACGTGACCTAACCATCTGTAAA
Found at i:61988989 original size:27 final size:27
Alignment explanation
Indices: 61988958--61989016 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
61988948 CCCCAAGGCA
*
61988958 GGTAAAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCAAAATACCCCTAGAG
*
61988985 GGTAAAATGACCAAAATACCCCTCGAG
1 GGTAAAATGACCAAAATACCCCTAGAG
61989012 GGTAA
1 GGTAA
61989017 TGACTGATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.17
Consensus pattern (27 bp):
GGTAAAATGACCAAAATACCCCTAGAG
Found at i:61989172 original size:27 final size:26
Alignment explanation
Indices: 61989131--61989195 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 26
61989121 GGAGGAAGTG
*
61989131 TACTGTACCGGTGGCTTTGCCACATA
1 TACTGTACTGGTGGCTTTGCCACATA
61989157 TACTGTTACTGGTGGCTTTGCCACATA
1 TACTG-TACTGGTGGCTTTGCCACATA
61989184 TACTGATACTGG
1 TACTG-TACTGG
61989196 CAGTTTTGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 5 0.14
27 31 0.86
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (26 bp):
TACTGTACTGGTGGCTTTGCCACATA
Found at i:61989203 original size:27 final size:27
Alignment explanation
Indices: 61989144--61989230 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 27
61989134 TGTACCGGTG
* **
61989144 GCTTTGCCACATATACTGTTACTGGTG
1 GCTTTGCCACATATACTGATACTGGCA
61989171 GCTTTGCCACATATACTGATACTGGCA
1 GCTTTGCCACATATACTGATACTGGCA
* ** * *
61989198 GTTTTGCTGCGT-TACTGTTACTGGCA
1 GCTTTGCCACATATACTGATACTGGCA
*
61989224 ACTTTGC
1 GCTTTGC
61989231 TACGATATTA
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 18 0.36
27 32 0.64
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GCTTTGCCACATATACTGATACTGGCA
Found at i:61989229 original size:26 final size:26
Alignment explanation
Indices: 61989183--61989263 Score: 90
Period size: 26 Copynumber: 3.1 Consensus size: 26
61989173 TTTGCCACAT
* **
61989183 ATACTGATACTGGCAGTTTTGCTGCG
1 ATACTGTTACTGGCAACTTTGCTGCG
* *
61989209 TTACTGTTACTGGCAACTTTGCTACG
1 ATACTGTTACTGGCAACTTTGCTGCG
* * *
61989235 ATATTATTACTAGCAACTTTGCTGCG
1 ATACTGTTACTGGCAACTTTGCTGCG
61989261 ATA
1 ATA
61989264 TTGGTGTGTT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGGCAACTTTGCTGCG
Found at i:62001468 original size:43 final size:43
Alignment explanation
Indices: 62001332--62001545 Score: 202
Period size: 43 Copynumber: 5.0 Consensus size: 43
62001322 GTTACAATAA
* *
62001332 TGTGATTACATGTAATACCATGTCTAGGACATTGGCATTGTAT
1 TGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATTGTAT
* *
62001375 TGTGATTATGTGTAAAACCATGTCTAGGACATTGGCATTGTAT
1 TGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATTGTAT
* * *
62001418 TGTGATTACGTGTAAGACCATGTCT-TGATAATTGGCATTGTTAA
1 TGTGATTACGTGTAAGACCATGTCTAGGA-CATTGGCATTG-TAT
* * * * * *
62001462 T-CGATTATGTGTAAGACCCTGTTTAGGACAGTGGCATCG-AT
1 TGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATTGTAT
* * * * * *
62001503 ATGAGATAACCTGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 -TGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATTGTAT
62001546 GAGCTTATGT
Statistics
Matches: 138, Mismatches: 27, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 10 0.07
43 122 0.88
44 5 0.04
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (43 bp):
TGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATTGTAT
Found at i:62004259 original size:47 final size:48
Alignment explanation
Indices: 62004190--62004315 Score: 175
Period size: 49 Copynumber: 2.6 Consensus size: 48
62004180 GTATAATGCT
* * *
62004190 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CA-TCAAGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCAAATTCAAGTC
* *
62004237 GATGCCATGTCCCAAACATGGTCTTACACTGACTATCAAAATTGAGGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGACTATC-AAATTCAAGTC
62004286 GATGCCATGTCCCAAACATGGTCTTACACT
1 GATGCCATGTCCCAAACATGGTCTTACACT
62004316 AGATCTCACA
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
46 3 0.04
47 32 0.45
48 1 0.01
49 35 0.49
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGACTATCAAATTCAAGTC
Found at i:62004435 original size:46 final size:46
Alignment explanation
Indices: 62004383--62004500 Score: 161
Period size: 46 Copynumber: 2.5 Consensus size: 46
62004373 CTTGTAGCCA
*
62004383 ATGCATGTCCCAGACATGTCTTACAATGGCTCTTGTC-TCAA-T-GCCG
1 ATGCATGTCCCAGACATGTCTTACAATGGC-ATT-TCAT-AAGTGGCCG
*
62004429 ATGCATGTCCCAGACATGTCTTACACTGGCATTTCATAATGTGGCCG
1 ATGCATGTCCCAGACATGTCTTACAATGGCATTTCATAA-GTGGCCG
62004476 ATGCATGTCCCAGACATGTCTTACA
1 ATGCATGTCCCAGACATGTCTTACA
62004501 CTAGCACACA
Statistics
Matches: 66, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
44 4 0.06
45 3 0.05
46 30 0.45
47 29 0.44
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACAATGGCATTTCATAAGTGGCCG
Found at i:62004494 original size:47 final size:46
Alignment explanation
Indices: 62004383--62004502 Score: 165
Period size: 47 Copynumber: 2.6 Consensus size: 46
62004373 CTTGTAGCCA
* *
62004383 ATGCATGTCCCAGACATGTCTTACAATGGCTCTTGTCTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTATTGTCTCAATGCCG
62004429 ATGCATGTCCCAGACATGTCTTACACTGGC-ATT-TCAT-AATGTGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTATTGTC-TCAA--T-GCCG
62004476 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
62004503 AGCACACACA
Statistics
Matches: 68, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
44 4 0.06
45 3 0.04
46 30 0.44
47 31 0.46
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTATTGTCTCAATGCCG
Found at i:62008631 original size:40 final size:40
Alignment explanation
Indices: 62008583--62008784 Score: 284
Period size: 40 Copynumber: 5.0 Consensus size: 40
62008573 GGATTTAACT
*
62008583 GGATATAGTTACTCGCTCAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTTACTCGCACAAATGCCTTCGGGACTTAGCCC
*
62008623 GGATATAG-TAGTTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTTA-CTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
62008663 GAATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTTACTCGCACAAATGCCTTCGGGACTTAGCCC
*
62008703 GGATATAG-TAGTTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTTA-CTCGCACAAATGCCTTCGGGACTTAGCCC
* *
62008743 GGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 GGATA-TAGTTACTCGCACAAATGCCTTCGGGACTTAGCCC
62008783 GG
1 GG
62008785 TTATCATCCG
Statistics
Matches: 144, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
39 4 0.03
40 138 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
GGATATAGTTACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:62008699 original size:80 final size:81
Alignment explanation
Indices: 62008585--62008784 Score: 334
Period size: 80 Copynumber: 2.5 Consensus size: 81
62008575 ATTTAACTGG
* * *
62008585 ATATAGTTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATGCCTT
1 ATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATGCCTT
62008650 CGGGACTTAGCCC-GA
66 CGGGACTTAGCCCGGA
62008665 ATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATGCCTT
1 ATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATGCCTT
62008730 CGGGACTTAGCCCGGA
66 CGGGACTTAGCCCGGA
*
62008746 AT-TAGTCACT-AGCACAAATGCCTTCGGGACTTAGCCCGG
1 ATATAGTAACTCA-CACAAATGCCTTCGGGACTTAGCCCGG
62008785 TTATCATCCG
Statistics
Matches: 114, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
79 1 0.01
80 109 0.96
81 4 0.04
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
ATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATGCCTT
CGGGACTTAGCCCGGA
Found at i:62012207 original size:47 final size:47
Alignment explanation
Indices: 62012144--62012246 Score: 188
Period size: 47 Copynumber: 2.2 Consensus size: 47
62012134 CCCTTCGGGA
* *
62012144 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
62012191 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
62012238 CTTATCACA
1 CTTATCACA
62012247 CAATTAATAC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:62023681 original size:46 final size:46
Alignment explanation
Indices: 62023613--62023703 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
62023603 TATATATACA
* * * *
62023613 CATCTCATACATTTGTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACAATTGTCACATTAACCATTCGGCTTCACCACATATC
* *
62023659 CATCTCATACACATT-TCGCATTAACCATTCGGCTTCCCCACATAT
1 CATCTCATACA-ATTGTCACATTAACCATTCGGCTTCACCACATAT
62023704 ATACACTTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 36 0.95
47 2 0.05
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACAATTGTCACATTAACCATTCGGCTTCACCACATATC
Found at i:62023746 original size:22 final size:22
Alignment explanation
Indices: 62023720--62023795 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
62023710 TTCCACGTTC
62023720 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
62023742 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
62023766 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
62023789 ATCACAT
1 ATCACAT
62023796 ATATACATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 13 0.32
23 11 0.27
24 11 0.27
25 6 0.15
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:62023768 original size:47 final size:47
Alignment explanation
Indices: 62023717--62023977 Score: 414
Period size: 47 Copynumber: 5.6 Consensus size: 47
62023707 CACTTCCACG
*
62023717 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
* * * *
62023764 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
*
62023811 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
* * *
62023858 CTCATCACATTGGCCATTGGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
* *
62023905 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
*
62023952 TTCATCACATTTGCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
62023978 GCTCATATAT
Statistics
Matches: 199, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 199 1.00
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
Found at i:62023784 original size:94 final size:94
Alignment explanation
Indices: 62023683--62024008 Score: 421
Period size: 94 Copynumber: 3.5 Consensus size: 94
62023673 TTCGCATTAA
* * *
62023683 CCATTCGG-CTTCCCCACATATATACACT-TCCACGTTCATCACATTGGCCATTCGGCCTTATCA
1 CCATTCGGCCTT-CACACATATATACA-TATTCACATTCATCACATTGGCCATTCGGCCTTATCA
*
62023746 CACATATGCATGTTCACATTCATCACATTGG
64 CACAAATGCATGTTCACATTCATCACATTGG
*
62023777 CCATTCGGCCTT-ATCACATATATACATATTCACATTCATCACATTGGCCATTCGGTCTTATCAC
1 CCATTCGGCCTTCA-CACATATATACATATTCACATTCATCACATTGGCCATTCGGCCTTATCAC
*
62023841 ACAAATGCATGTTCACACTCATCACATTGG
65 ACAAATGCATGTTCACATTCATCACATTGG
* * * * *
62023871 CCATTGGGCCTTAGCACACA-A-ATGCATGTTCACATTCATCACATTTGCCATTCGGCCTTAGCA
1 CCATTCGGCCTT--CACACATATATACATATTCACATTCATCACATTGGCCATTCGGCCTTATCA
*
62023934 CACAAATGCATGTTCACATTCATCACATTTG
64 CACAAATGCATGTTCACATTCATCACATTGG
* * *
62023965 CCATTCGGCCTT-AGCTCATATATACACATTCACATCCATCACAT
1 CCATTCGGCCTTCA-CACATATATACATATTCACATTCATCACAT
62024009 AAAATCCTAA
Statistics
Matches: 203, Mismatches: 20, Indels: 18
0.84 0.08 0.07
Matches are distributed among these distances:
91 1 0.00
92 3 0.01
93 2 0.01
94 188 0.93
95 4 0.02
96 4 0.02
97 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.31
Consensus pattern (94 bp):
CCATTCGGCCTTCACACATATATACATATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CAAATGCATGTTCACATTCATCACATTGG
Found at i:62023913 original size:23 final size:23
Alignment explanation
Indices: 62023887--62023960 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
62023877 GGCCTTAGCA
62023887 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
** * *
62023910 CACATTTGCCA--TTCGGCCTTAGCA-
1 CACAAATG-CATGTTC-ACATT--CAT
62023934 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
62023957 CACA
1 CACA
62023961 TTTGCCATTC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 15 0.42
24 11 0.31
25 5 0.14
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (23 bp):
CACAAATGCATGTTCACATTCAT
Found at i:62023997 original size:47 final size:47
Alignment explanation
Indices: 62023717--62024008 Score: 404
Period size: 47 Copynumber: 6.2 Consensus size: 47
62023707 CACTTCCACG
*
62023717 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* * * *
62023764 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* * *
62023811 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* * *
62023858 CTCATCACATTGGCCATTGGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* *
62023905 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* * * * **
62023952 TTCATCACATTTGCCATTCGGCCTTAGCTCATATATACACATTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
*
62023999 TCCATCACAT
1 TTCATCACAT
62024009 AAAATCCTAA
Statistics
Matches: 223, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 223 1.00
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.31
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
Found at i:62024772 original size:30 final size:30
Alignment explanation
Indices: 62024736--62024797 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
62024726 CAACCCCTTT
62024736 ACTTACACGATTTCTTGTATACGAAACTAG
1 ACTTACACGATTTCTTGTATACGAAACTAG
62024766 ACTTACACGATTTCTTGTATACGAAACTAG
1 ACTTACACGATTTCTTGTATACGAAACTAG
62024796 AC
1 AC
62024798 GCATCAAGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (30 bp):
ACTTACACGATTTCTTGTATACGAAACTAG
Found at i:62026625 original size:43 final size:42
Alignment explanation
Indices: 62026564--62026733 Score: 164
Period size: 43 Copynumber: 4.0 Consensus size: 42
62026554 GTTACATAGA
*
62026564 TGTGATTACATGTAAGACCATGTGTGGGAAATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGAAA-TGGCATTGTAT
* * * * *
62026607 TGTGATTACGTGTAAGACCATGTCTGAGACATTGGCATCGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGGA-AATGGCATTG-TAT
* * *
62026651 T-CGATTACGTGTAAGACCCTGTCTGGGACAATGGCATTG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGA-AATGGCATTGTAT
* * * *
62026692 ATGTGATAACATGTAAGACCATATTTGGGATATGGCATTGTA
1 -TGTGATTACATGTAAGACCATGTCTGGGAAATGGCATTGTA
62026734 CGAGCTTATG
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
42 10 0.10
43 88 0.85
44 4 0.04
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTGATTACATGTAAGACCATGTCTGGGAAATGGCATTGTAT
Found at i:62029387 original size:21 final size:21
Alignment explanation
Indices: 62029363--62029412 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
62029353 GTGGTCCAAG
* *
62029363 GACACGCCCGTGTGACCTTAA
1 GACACGCCCGCGTGACCCTAA
*
62029384 GACACGCTCGCGTGACCCTAA
1 GACACGCCCGCGTGACCCTAA
62029405 GACACGCC
1 GACACGCC
62029413 TATGCTATAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.24, C:0.38, G:0.24, T:0.14
Consensus pattern (21 bp):
GACACGCCCGCGTGACCCTAA
Found at i:62031870 original size:39 final size:39
Alignment explanation
Indices: 62031826--62031902 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
62031816 CATTTTCTAC
62031826 CATAAATTTCAAAATTTCAACATATTCATCCATGAACTT
1 CATAAATTTCAAAATTTCAACATATTCATCCATGAACTT
*
62031865 CATAAATTTCAAATTTTCAACATATTCATCCATGAACT
1 CATAAATTTCAAAATTTCAACATATTCATCCATGAACT
62031903 AACTTCCATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.40, C:0.21, G:0.03, T:0.36
Consensus pattern (39 bp):
CATAAATTTCAAAATTTCAACATATTCATCCATGAACTT
Found at i:62035239 original size:48 final size:48
Alignment explanation
Indices: 62035065--62035242 Score: 207
Period size: 48 Copynumber: 3.7 Consensus size: 48
62035055 TATGTGTGCG
* * * **
62035065 AGTGTAAGACCATGTTTGGAACATGGCATCGACCA-CGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATC-AGCATTGACATGAGAGCT
* * *
62035113 AGTGTAAGACCATGTGTGGAACATGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCAGCATTGACATGAGAGCT
* * *
62035161 ACTGTAAGACCATGTCTGGGACATGGCATCAGC-TTCGACATGTGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCAGCATT-GACATGAGAGCT
**
62035209 AGTGTAAGACTGTGTCTGGAACATGGCATCAGCA
1 AGTGTAAGACCATGTCTGGAACATGGCATCAGCA
62035243 ATTTACCCTT
Statistics
Matches: 111, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
47 4 0.04
48 107 0.96
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCAGCATTGACATGAGAGCT
Found at i:62037645 original size:42 final size:42
Alignment explanation
Indices: 62037599--62037723 Score: 117
Period size: 48 Copynumber: 2.8 Consensus size: 42
62037589 CATGGGTCCG
* * * *
62037599 CATATCGATGCCATATCCCATATATGGTCTTATATGA-AGGCT
1 CATATCGATGCCATATCCCAGAAATGGTCTTATACGAGA-CCT
*
62037641 CATATGGGTGCCGATGCCATATCCCAGACATGGTCTTATACGAGACCT
1 CATA----T-C-GATGCCATATCCCAGAAATGGTCTTATACGAGACCT
* *
62037689 CATATCGATGTCATGTCCCAGAAATGGTCTTATAC
1 CATATCGATGCCATATCCCAGAAATGGTCTTATAC
62037724 AAAATCACTT
Statistics
Matches: 69, Mismatches: 7, Indels: 14
0.77 0.08 0.16
Matches are distributed among these distances:
42 30 0.43
43 1 0.01
44 1 0.01
46 1 0.01
47 1 0.01
48 34 0.49
49 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (42 bp):
CATATCGATGCCATATCCCAGAAATGGTCTTATACGAGACCT
Found at i:62037740 original size:42 final size:42
Alignment explanation
Indices: 62037652--62037741 Score: 99
Period size: 42 Copynumber: 2.1 Consensus size: 42
62037642 ATATGGGTGC
* * * * * *
62037652 CGATGCCATATCCCAGACATGGTCTTATACGAGACCTCATAT
1 CGATGTCATATCCCAGAAATGGTCTTATACAAAACCACATAA
* * *
62037694 CGATGTCATGTCCCAGAAATGGTCTTATACAAAATCACTTAA
1 CGATGTCATATCCCAGAAATGGTCTTATACAAAACCACATAA
62037736 CGATGT
1 CGATGT
62037742 TGAAGCCATA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (42 bp):
CGATGTCATATCCCAGAAATGGTCTTATACAAAACCACATAA
Found at i:62044448 original size:34 final size:34
Alignment explanation
Indices: 62044405--62044470 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
62044395 AATGTGACTA
62044405 ATAGTTAAGCTAAATGTGATATTTTAGATTAAAG
1 ATAGTTAAGCTAAATGTGATATTTTAGATTAAAG
62044439 ATAGTTAAGCTAAATGTGATATTTTAGATTAA
1 ATAGTTAAGCTAAATGTGATATTTTAGATTAA
62044471 GGAAAACGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.41, C:0.03, G:0.17, T:0.39
Consensus pattern (34 bp):
ATAGTTAAGCTAAATGTGATATTTTAGATTAAAG
Found at i:62045004 original size:19 final size:19
Alignment explanation
Indices: 62044980--62045016 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
62044970 CCAATCTGAT
*
62044980 AACATATAAAAGTTTCAAA
1 AACATAGAAAAGTTTCAAA
*
62044999 AACATAGAAAATTTTCAA
1 AACATAGAAAAGTTTCAA
62045017 CTTTTAAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (19 bp):
AACATAGAAAAGTTTCAAA
Found at i:62046086 original size:28 final size:28
Alignment explanation
Indices: 62046032--62046086 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
62046022 CAATAATTGT
* **
62046032 ACAGTCTGGGCCTAAGCCCTATGCAGTG
1 ACAGTCTGGGCCTAAGCCCAAAACAGTG
* *
62046060 ACAGTGTGGGCCTATGCCCAAAACAGT
1 ACAGTCTGGGCCTAAGCCCAAAACAGT
62046087 ATAATCACAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.20
Consensus pattern (28 bp):
ACAGTCTGGGCCTAAGCCCAAAACAGTG
Found at i:62046257 original size:22 final size:22
Alignment explanation
Indices: 62046232--62046274 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
62046222 AACAGGACAG
* *
62046232 CTCAACGCTGTAGACAGGATGA
1 CTCAACACTATAGACAGGATGA
*
62046254 CTCAACATTATAGACAGGATG
1 CTCAACACTATAGACAGGATG
62046275 GCTAAAGACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (22 bp):
CTCAACACTATAGACAGGATGA
Found at i:62048801 original size:147 final size:147
Alignment explanation
Indices: 62048534--62048827 Score: 588
Period size: 147 Copynumber: 2.0 Consensus size: 147
62048524 CTTAAAAAAA
62048534 ATCTGATTTCCAGCACATACACTGAATAAATACAAAATCTAACTTTAAGTACAGTCTAACAGAAA
1 ATCTGATTTCCAGCACATACACTGAATAAATACAAAATCTAACTTTAAGTACAGTCTAACAGAAA
62048599 ACTTATGGATTCGGCGCGGGAAAATCGGTAACCACACTTTCAGGGAAATATTTAGAAAAACATTT
66 ACTTATGGATTCGGCGCGGGAAAATCGGTAACCACACTTTCAGGGAAATATTTAGAAAAACATTT
62048664 CAAATACTTCAAATCTT
131 CAAATACTTCAAATCTT
62048681 ATCTGATTTCCAGCACATACACTGAATAAATACAAAATCTAACTTTAAGTACAGTCTAACAGAAA
1 ATCTGATTTCCAGCACATACACTGAATAAATACAAAATCTAACTTTAAGTACAGTCTAACAGAAA
62048746 ACTTATGGATTCGGCGCGGGAAAATCGGTAACCACACTTTCAGGGAAATATTTAGAAAAACATTT
66 ACTTATGGATTCGGCGCGGGAAAATCGGTAACCACACTTTCAGGGAAATATTTAGAAAAACATTT
62048811 CAAATACTTCAAATCTT
131 CAAATACTTCAAATCTT
62048828 TTCAAACCTT
Statistics
Matches: 147, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
147 147 1.00
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (147 bp):
ATCTGATTTCCAGCACATACACTGAATAAATACAAAATCTAACTTTAAGTACAGTCTAACAGAAA
ACTTATGGATTCGGCGCGGGAAAATCGGTAACCACACTTTCAGGGAAATATTTAGAAAAACATTT
CAAATACTTCAAATCTT
Found at i:62049766 original size:22 final size:22
Alignment explanation
Indices: 62049738--62049802 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
62049728 AACAGAACGG
* *
62049738 CTCAACGCCGTAGATAGGATGA
1 CTCAACGTCGTAGACAGGATGA
** *
62049760 CTCAACGTCACAAACAGGATGA
1 CTCAACGTCGTAGACAGGATGA
*
62049782 CTCAACATCGTAGACAGGATG
1 CTCAACGTCGTAGACAGGATG
62049803 GCAAAAGGCC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (22 bp):
CTCAACGTCGTAGACAGGATGA
Found at i:62052145 original size:43 final size:42
Alignment explanation
Indices: 62052098--62052193 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 42
62052088 TCTCAGACAT
* * * *
62052098 GGTCTTACATGTAATCAAACATTGATGCCACTGTCCCAAACAG
1 GGTCTTACACGAAATCAAACA-CGATGCCAATGTCCCAAACAG
* * * *
62052141 GGTCTTACACGAAATCAGATACGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAACACGATGCCAATGTCCCAAACAG
62052183 GGTCTTACACG
1 GGTCTTACACG
62052194 CAAAACAGAA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 28 0.62
43 17 0.38
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAACACGATGCCAATGTCCCAAACAG
Found at i:62052177 original size:42 final size:43
Alignment explanation
Indices: 62052121--62052202 Score: 121
Period size: 42 Copynumber: 1.9 Consensus size: 43
62052111 ATCAAACATT
* *
62052121 GATGCCACTGTCCCAAACAGGGTCTTACACG-AAATCAGATAC
1 GATGCCAATGTCCCAAACAGGGTCTTACACGCAAAACAGATAC
* *
62052163 GATGCCAATGTCCCAGACATGGTCTTACACGCAAAACAGA
1 GATGCCAATGTCCCAAACAGGGTCTTACACGCAAAACAGA
62052203 AGTCTATGCC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 28 0.80
43 7 0.20
ACGTcount: A:0.34, C:0.28, G:0.20, T:0.18
Consensus pattern (43 bp):
GATGCCAATGTCCCAAACAGGGTCTTACACGCAAAACAGATAC
Found at i:62057137 original size:27 final size:27
Alignment explanation
Indices: 62057103--62057301 Score: 229
Period size: 27 Copynumber: 7.4 Consensus size: 27
62057093 TGGATAAGTT
* *
62057103 GTAGAATTACCAAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
62057130 GTAGAATTATCGTAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* ** *
62057157 GTAAAATTATTGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
62057184 GTAGAATTATCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
62057211 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
62057238 TTAGAAATACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
62057265 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
62057292 GTA-AATTACC
1 GTAGAATTACC
62057302 ATTTTACCCC
Statistics
Matches: 146, Mismatches: 26, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 7 0.05
27 139 0.95
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:62057187 original size:54 final size:54
Alignment explanation
Indices: 62057103--62057299 Score: 252
Period size: 54 Copynumber: 3.7 Consensus size: 54
62057093 TGGATAAGTT
* * * *
62057103 GTAGAATTACCAAAATACCCCTGTAAGGTAGAATTATCGTAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGG
* ** *
62057157 GTAAAATTATTGAAATACCCTTGTAGGGTAGAATTATCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGG
* * * * *
62057211 ATAGAATTACCGAAATACCCTTGTAGGTTAGAAATACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGG
* *
62057265 GTAGAATTACCGAGATACCCTTGTGGGGTA-AATTA
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTA
62057300 CCATTTTACC
Statistics
Matches: 121, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
53 4 0.03
54 117 0.97
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGG
Found at i:62058064 original size:29 final size:27
Alignment explanation
Indices: 62058018--62058099 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
62058008 CCTCACTGCA
*
62058018 ATCTGGTGGCTTCACCACATATATATCTGT
1 ATCTGGTGGCCTCACCAC--A-ATATCTGT
62058048 -TCTGGTGGCCT-AGCCACAATATCTGT
1 ATCTGGTGGCCTCA-CCACAATATCTGT
* * **
62058074 ATCTGGTGACTTCGTCACAATATCTG
1 ATCTGGTGGCCTCACCACAATATCTG
62058100 GTAGCCTCGC
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
26 8 0.18
27 21 0.48
28 1 0.02
29 14 0.32
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (27 bp):
ATCTGGTGGCCTCACCACAATATCTGT
Found at i:62058092 original size:27 final size:26
Alignment explanation
Indices: 62058040--62058099 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
62058030 CACCACATAT
*
62058040 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
62058066 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
62058093 ATATCTG
1 ATATCTG
62058100 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:62063617 original size:27 final size:27
Alignment explanation
Indices: 62063475--62063624 Score: 167
Period size: 27 Copynumber: 5.6 Consensus size: 27
62063465 CCAATGGGTC
** *
62063475 TGTAGGGTAGAATTATTGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCT
* *
62063502 TGTAGAGAAGAATTACCGAAATA-CCT
1 TGTAGGGTAGAATTACCGAAATACCCT
* *
62063528 CTGTAGGATAGAATTACTGAAATACCCT
1 -TGTAGGGTAGAATTACCGAAATACCCT
* *
62063556 TGTAGGGTAGAAATACCGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCT
* *
62063583 TGTAGGGTTGAATTACCGAGATACCCT
1 TGTAGGGTAGAATTACCGAAATACCCT
* *
62063610 TGTGGGGTAAAATTA
1 TGTAGGGTAGAATTA
62063625 GCATTATGCC
Statistics
Matches: 101, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.02
27 96 0.95
28 3 0.03
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.27
Consensus pattern (27 bp):
TGTAGGGTAGAATTACCGAAATACCCT
Found at i:62063618 original size:54 final size:54
Alignment explanation
Indices: 62063474--62063622 Score: 192
Period size: 54 Copynumber: 2.8 Consensus size: 54
62063464 CCCAATGGGT
* * * * * *
62063474 CTGTAGGGTAGAATTATTGAAATACCCCTGTAGAGAAGAATTACCGAAATACCT
1 CTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCC
*
62063528 CTGTAGGATAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCC
* * * *
62063582 CTGTAGGGTTGAATTACCGAGATACCCTTGTGGGGTA-AAAT
1 CTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAAT
62063623 TAGCATTATG
Statistics
Matches: 83, Mismatches: 12, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
53 4 0.05
54 79 0.95
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (54 bp):
CTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCC
Found at i:62063624 original size:81 final size:81
Alignment explanation
Indices: 62063475--62063624 Score: 194
Period size: 81 Copynumber: 1.9 Consensus size: 81
62063465 CCAATGGGTC
* ** *
62063475 TGTAGGGTAGAATTATTGAAATACCCCTGTAGAGAAGAATTACCGAAATACCTCTGTAGGATAGA
1 TGTAGGGTAGAAATACCGAAATACCCCTGTAGAGAAGAATTACCGAAATACCTCTGTAGGATAAA
62063540 ATTACTGAAATACCCT
66 ATTACTGAAATACCCT
* ** * * *
62063556 TGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTTGAATTACCGAGATACC-CTTGTGGGGTAA
1 TGTAGGGTAGAAATACCGAAATACCCCTGTAGAGAAGAATTACCGAAATACCTC-TGTAGGATAA
62063620 AATTA
65 AATTA
62063625 GCATTATGCC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
80 1 0.02
81 57 0.98
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.27
Consensus pattern (81 bp):
TGTAGGGTAGAAATACCGAAATACCCCTGTAGAGAAGAATTACCGAAATACCTCTGTAGGATAAA
ATTACTGAAATACCCT
Found at i:62077112 original size:21 final size:24
Alignment explanation
Indices: 62077077--62077119 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
62077067 ACCAAATTAC
62077077 CACATATATCGCATAT-CATAAAA
1 CACATATATCGCATATGCATAAAA
62077100 CACATATA-C-CATATGCATAA
1 CACATATATCGCATATGCATAA
62077120 TCAAGTACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 6 0.32
23 8 0.42
ACGTcount: A:0.47, C:0.23, G:0.05, T:0.26
Consensus pattern (24 bp):
CACATATATCGCATATGCATAAAA
Found at i:62082927 original size:31 final size:31
Alignment explanation
Indices: 62082886--62082961 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 31
62082876 AATCAAAATG
62082886 AGAATCAGAATCAGAATCAAGAGACAGAATC
1 AGAATCAGAATCAGAATCAAGAGACAGAATC
* * * *
62082917 AGAATTAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAAGAGACAGAATC
* *
62082948 AGAACCAGTATCAG
1 AGAATCAGAATCAG
62082962 GTAGCAGAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.47, C:0.14, G:0.21, T:0.17
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAGAGACAGAATC
Found at i:62082944 original size:25 final size:25
Alignment explanation
Indices: 62082916--62082983 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
62082906 GAGACAGAAT
*
62082916 CAGAATTAGAATCAGAATTAGGT-G
1 CAGAATTAGAATCAGAATCAGGTAG
* * *
62082940 ACAGAATCAGAACCAGTATCAGGTAG
1 -CAGAATTAGAATCAGAATCAGGTAG
*
62082966 CAGAATTAGAATTAGAAT
1 CAGAATTAGAATCAGAAT
62082984 ATGAATGCAA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
25 33 0.97
26 1 0.03
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (25 bp):
CAGAATTAGAATCAGAATCAGGTAG
Found at i:62082951 original size:6 final size:6
Alignment explanation
Indices: 62082865--62082933 Score: 70
Period size: 6 Copynumber: 11.3 Consensus size: 6
62082855 AAGAAACATT
* *
62082865 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAAGA GA-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATC-AGA -ATCAGA
*
62082914 ATCAGA ATTAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
62082934 TAGGTGACAG
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
5 2 0.04
6 44 0.85
7 5 0.10
8 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:62083150 original size:27 final size:26
Alignment explanation
Indices: 62083104--62083209 Score: 131
Period size: 27 Copynumber: 4.0 Consensus size: 26
62083094 CATGGCTGCT
* * *
62083104 AGAATAGATATTGTGACAGAGTCACC
1 AGAACAGATATTGTGGCAGAGCCACC
62083130 AGATACAGATATTGTGGCAGAGCCACC
1 AGA-ACAGATATTGTGGCAGAGCCACC
*
62083157 AGAACAGATATTTGTGGCATAGCCACC
1 AGAACAGATA-TTGTGGCAGAGCCACC
* *
62083184 AGAAACAGATAATGTGGCAAAGCCAC
1 AG-AACAGATATTGTGGCAGAGCCAC
62083210 TTAACAGAAT
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 10 0.14
27 53 0.75
28 8 0.11
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.19
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAGCCACC
Found at i:62083400 original size:22 final size:22
Alignment explanation
Indices: 62083368--62083418 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
62083358 TAAATACGTT
*
62083368 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * *
62083390 TGGCACAAAGCCATATTTAAGT
1 TGGCACAAAGCCATAGTCAAGA
62083412 TGGCACA
1 TGGCACA
62083419 GAGTCATCGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.20
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:62084056 original size:161 final size:161
Alignment explanation
Indices: 62083774--62084534 Score: 1143
Period size: 161 Copynumber: 4.7 Consensus size: 161
62083764 GGGCAAAATG
* * * *
62083774 GTAATTTTACCCCACGAGGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGGTATTTCTACC
1 GTAATTTTACCCTAC-AGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACC
* * * *
62083839 CTATAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTA
65 CTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCCTACAGGGGTA
*
62083904 TTTCGGTATTTCTACCCTACAAGGGTATTTCG
130 TTTCGGTATTTCTACCCTACAAGGGTATTTCA
* * *
62083936 GT-ATTTCTACCCTACAGGGTATTTTGGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACC
1 GTAATTT-TACCCTACAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACC
* *
62084000 CTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTTTACCCTACAGGGGTA
65 CTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCCTACAGGGGTA
62084065 TTTCGGTATTTCTACCCTACAAGGGTATTTCA
130 TTTCGGTATTTCTACCCTACAAGGGTATTTCA
* *
62084097 GTAATTTTACCCTACAGGGGTATTTCGGTATTTCTACCCTATAAGGG-ATTTCGGTATTTCTACC
1 GTAATTTTACCCTACA-GGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACC
** * *
62084161 CTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTA
65 CTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCCTACAGGGGTA
* *
62084226 TTTCGGTATATCTACCCTACAAGGGTATTTCG
130 TTTCGGTATTTCTACCCTACAAGGGTATTTCA
* * *
62084258 GT-ATTTCTACCCTACAGGGTATTTTGGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACC
1 GTAATTT-TACCCTACAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACC
* * *
62084322 CTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTAGTAATTTTACCCTACAGGGGTA
65 CTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCCTACAGGGGTA
*
62084387 TTTCGATATTTCTACCCTACAAGGGTATTTCA
130 TTTCGGTATTTCTACCCTACAAGGGTATTTCA
* *
62084419 GTAATTTTACCCTACAGGGGTATTTCGGTATTTCTACCCTATAAGGG-ATTTCGGTATTTCTACC
1 GTAATTTTACCCTACA-GGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACC
* * *
62084483 CTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAATAATTTTA
65 CTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTA
62084535 TAAATCGAGG
Statistics
Matches: 541, Mismatches: 51, Indels: 15
0.89 0.08 0.02
Matches are distributed among these distances:
160 31 0.06
161 439 0.81
162 71 0.13
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (161 bp):
GTAATTTTACCCTACAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCC
TACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCCTACAGGGGTAT
TTCGGTATTTCTACCCTACAAGGGTATTTCA
Found at i:62084531 original size:27 final size:27
Alignment explanation
Indices: 62083773--62084523 Score: 983
Period size: 27 Copynumber: 28.0 Consensus size: 27
62083763 GGGGCAAAAT
* * *
62083773 GGTAATTTTACCCCAC-GAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
*
62083800 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
62083827 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
62083854 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62083881 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62083908 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62083935 GGTATTTCTACCCTACA-GGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62083961 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62083988 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62084015 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62084042 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62084069 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62084096 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
62084123 GGTATTTCTACCCTATAAGGG-ATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62084149 GGTATTTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62084176 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62084203 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62084230 GGT-ATATCTACCCTACAAGGGTATTTC
1 GGTAAT-TCTACCCTACAGGGGTATTTC
* *
62084257 GGTATTTCTACCCTACA-GGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62084283 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62084310 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
62084337 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62084364 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
62084391 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62084418 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
62084445 GGTATTTCTACCCTATAAGGG-ATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62084471 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62084498 AGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
62084524 TAATAATTTT
Statistics
Matches: 629, Mismatches: 88, Indels: 14
0.86 0.12 0.02
Matches are distributed among these distances:
26 96 0.15
27 531 0.84
28 2 0.00
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:62084546 original size:27 final size:27
Alignment explanation
Indices: 62084516--62084804 Score: 276
Period size: 27 Copynumber: 10.7 Consensus size: 27
62084506 TACCCTACAG
** *
62084516 GGGTATTTTAATAATTTTATAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
**** * ** *
62084543 GGGTAAAACGGTAATTCTGTAAATCGG
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
62084570 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
62084597 GGGTATTTTAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
** * *
62084624 GGGTATTTCAGTAATTTTGCAAATTGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* * *
62084651 GGGTATTTCGGTAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
62084678 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
62084705 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
** *
62084732 GGGTATTTTGGTAATTTTGTAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
62084758 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTTGGTAATTTTACAAATCGA
*
62084785 GGGGTATTTTGGTGATTTTA
1 -GGGTATTTTGGTAATTTTA
62084805 TAAACTAAAG
Statistics
Matches: 222, Mismatches: 39, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 2 0.01
27 220 0.99
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:62087273 original size:39 final size:40
Alignment explanation
Indices: 62087172--62087356 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
62087162 TCGAATGATG
* * * *
62087172 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * *
62087212 TCCAGACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
62087252 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62087291 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
62087332 -CCGGGCTATGTCCCGAAGGAATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62087357 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 22, Indels: 10
0.79 0.15 0.07
Matches are distributed among these distances:
39 32 0.27
40 76 0.64
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62096835 original size:40 final size:40
Alignment explanation
Indices: 62096780--62097049 Score: 450
Period size: 40 Copynumber: 6.8 Consensus size: 40
62096770 ATTTGAATAC
62096780 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
62096820 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
62096860 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
62096900 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
62096940 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
62096980 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
62097020 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
62097050 TTGTGGTTAT
Statistics
Matches: 217, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:62105306 original size:40 final size:40
Alignment explanation
Indices: 62105251--62105522 Score: 454
Period size: 40 Copynumber: 6.8 Consensus size: 40
62105241 ATTTGAATAC
*
62105251 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
62105291 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
62105331 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
62105373 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
62105413 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
62105453 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
62105493 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
62105523 TTGTGGTTAT
Statistics
Matches: 219, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
40 179 0.82
42 40 0.18
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:62105468 original size:122 final size:122
Alignment explanation
Indices: 62105243--62105522 Score: 467
Period size: 122 Copynumber: 2.3 Consensus size: 122
62105233 GCATGAGCAT
*
62105243 TTGA-ATACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
* * *
62105307 GAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
66 GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
*
62105364 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
62105429 GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
66 GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
* * *
62105486 TTG-C-TATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
62105523 TTGTGGTTAT
Statistics
Matches: 150, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
120 30 0.20
121 5 0.03
122 115 0.77
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (122 bp):
TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
Found at i:62106810 original size:40 final size:40
Alignment explanation
Indices: 62106687--62106803 Score: 157
Period size: 40 Copynumber: 3.0 Consensus size: 40
62106677 ACAAATTGGC
* * *
62106687 CGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTGGTG
1 CGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTG
* *
62106726 CGAGTTACTAAATCCGAGTTAAGTCCCGAAGGCATTTGTG
1 CGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTG
*
62106766 CGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTG
1 CGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTG
62106804 AACGAGTAGC
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 19 0.28
40 47 0.69
41 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTG
Found at i:62111143 original size:19 final size:18
Alignment explanation
Indices: 62111110--62111148 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
62111100 GCCGAAAAAC
*
62111110 TGAGCGTGTTAATGCTATA
1 TGAGCGTGCTAATGCT-TA
*
62111129 TGAGCGTGCTCATGCTTA
1 TGAGCGTGCTAATGCTTA
62111147 TG
1 TG
62111149 TTGATTGTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (18 bp):
TGAGCGTGCTAATGCTTA
Found at i:62116301 original size:18 final size:18
Alignment explanation
Indices: 62116278--62116312 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
62116268 GGCCCAGAAT
*
62116278 CCCACACGCCCGTGTGGG
1 CCCACACGCCCATGTGGG
*
62116296 CCCACATGCCCATGTGG
1 CCCACACGCCCATGTGG
62116313 CCTACACGGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.43, G:0.29, T:0.14
Consensus pattern (18 bp):
CCCACACGCCCATGTGGG
Found at i:62123456 original size:17 final size:18
Alignment explanation
Indices: 62123426--62123460 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
62123416 ATGTCGCTTG
62123426 CCCGTGTCAGCCCACACA
1 CCCGTGTCAGCCCACACA
62123444 CCCGTGT-AGCCCACACA
1 CCCGTGTCAGCCCACACA
62123461 GTCCAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.23, C:0.49, G:0.17, T:0.11
Consensus pattern (18 bp):
CCCGTGTCAGCCCACACA
Found at i:62125763 original size:26 final size:27
Alignment explanation
Indices: 62125729--62125790 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 27
62125719 ATCTTTTAGC
* *
62125729 AATTTACCAAAATAAACCTCAACCA-T
1 AATTAACCAAAATAAACCTCAAACATT
* * *
62125755 AATTAACCATAATCAATCTCAAACATT
1 AATTAACCAAAATAAACCTCAAACATT
*
62125782 AATAAACCA
1 AATTAACCA
62125791 TACCAAGCAC
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
26 20 0.69
27 9 0.31
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (27 bp):
AATTAACCAAAATAAACCTCAAACATT
Found at i:62126722 original size:56 final size:55
Alignment explanation
Indices: 62126636--62126796 Score: 191
Period size: 56 Copynumber: 2.9 Consensus size: 55
62126626 ATGTAATTAT
* * *
62126636 ATATCGATGCC-ACTATTCCAAACAG-GGTCTTACTCACAAACACATATCGGAATCAC
1 ATATCGATGCCAACTATT--AAAC-GTGGTCTTACTCGCACACACATATCGAAATCAC
* *
62126692 ATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACATATATCGAAATCGC
1 ATATCGATGCCAAC-TATTAAACGTGGTCTTACTCGCACACACATATCGAAATCAC
* * *
62126748 ATATTGATGCCAACGTATTAAATGTGGTCTTACTCGGACACACATATCG
1 ATATCGATGCCAAC-TATTAAACGTGGTCTTACTCGCACACACATATCG
62126797 TACAATGCTA
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
55 1 0.01
56 85 0.92
57 2 0.02
58 4 0.04
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.27
Consensus pattern (55 bp):
ATATCGATGCCAACTATTAAACGTGGTCTTACTCGCACACACATATCGAAATCAC
Done.