Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 189 of 352
Found at i:62137130 original size:47 final size:47
Alignment explanation
Indices: 62137079--62137681 Score: 1001
Period size: 47 Copynumber: 12.7 Consensus size: 47
62137069 TTAGGATTCT
* *
62137079 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
62137126 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62137173 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
62137220 ATGTGATGAGTGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62137267 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
62137314 ATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
62137361 ATGTGATGAGTGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
62137410 ATGTGATGAGTGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
62137459 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
62137506 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
62137553 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
62137600 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
62137647 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62137682 TCCCGAAGGG
Statistics
Matches: 534, Mismatches: 19, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
46 1 0.00
47 440 0.82
49 93 0.17
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:62140009 original size:40 final size:40
Alignment explanation
Indices: 62139958--62140033 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
62139948 CGGTATTTTA
*
62139958 TGGTGTGTAGGGTTAGATGGGTCGATTTTATCCCCATATT
1 TGGTGTGTAGGGATAGATGGGTCGATTTTATCCCCATATT
* * **
62139998 TGGTGTGTAGGGATGGGTGGGTTTATTTTATCCCCA
1 TGGTGTGTAGGGATAGATGGGTCGATTTTATCCCCA
62140034 CATCTTGTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.16, C:0.12, G:0.33, T:0.39
Consensus pattern (40 bp):
TGGTGTGTAGGGATAGATGGGTCGATTTTATCCCCATATT
Found at i:62140826 original size:43 final size:43
Alignment explanation
Indices: 62140729--62140882 Score: 231
Period size: 43 Copynumber: 3.6 Consensus size: 43
62140719 GGGTGTTACA
* * *
62140729 GCCATTGTCCCAGACAGGGTCTTACACG-AATCAAATA-TGAT
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCACATATTGAT
62140770 GCCAATGTCCCAGACATGGTCTTACACGTAATCACATATTGAT
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCACATATTGAT
62140813 GCCAATGTCCCAGACATGGTCTTACACGTAATCACATATTGAT
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCACATATTGAT
* * * *
62140856 GCCAATATCCCAAACGTTGTCTTACAC
1 GCCAATGTCCCAGACATGGTCTTACAC
62140883 AAGAACAGAT
Statistics
Matches: 104, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 26 0.25
42 8 0.08
43 70 0.67
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
GCCAATGTCCCAGACATGGTCTTACACGTAATCACATATTGAT
Found at i:62144834 original size:29 final size:27
Alignment explanation
Indices: 62144791--62144859 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 27
62144781 TTTAGTTTGA
62144791 TTTAGTTTTTAATTTTTTCAAATTATTTT
1 TTTAGTTTTTAATTTTTT-AAA-TATTTT
62144820 TTTA-TTTTTAGATTTTTTAAATATTTT
1 TTTAGTTTTTA-ATTTTTTAAATATTTT
* *
62144847 TATAGCTTTTAAT
1 TTTAGTTTTTAAT
62144860 ATTATATTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
27 11 0.31
28 14 0.39
29 11 0.31
ACGTcount: A:0.26, C:0.03, G:0.04, T:0.67
Consensus pattern (27 bp):
TTTAGTTTTTAATTTTTTAAATATTTT
Found at i:62145020 original size:23 final size:23
Alignment explanation
Indices: 62144992--62145035 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
62144982 TTAAGTTATT
62144992 TTTATTATTTTA-AATATAAAATA
1 TTTATT-TTTTATAATATAAAATA
*
62145015 TTTATTTTTTATATTATAAAA
1 TTTATTTTTTATAATATAAAA
62145036 ATTAAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTATTTTTTATAATATAAAATA
Found at i:62145293 original size:5 final size:5
Alignment explanation
Indices: 62145285--62145323 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
62145275 AAAAAAAAGT
*
62145285 AGAAA AGAAA AGAAA AGAAA AGAAG AG-AA AG-AA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA A
62145324 ACTAGGCATG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 7 0.23
5 24 0.77
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:62145305 original size:23 final size:23
Alignment explanation
Indices: 62145274--62145324 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
62145264 CTTTTTCTTA
*
62145274 AAAAAAAAAGTAGA-AAAGAAAAG
1 AAAAAAAAAGAAGAGAAAG-AAAG
*
62145297 AAAAGAAAAGAAGAGAAAGAAAG
1 AAAAAAAAAGAAGAGAAAGAAAG
62145320 AAAAA
1 AAAAA
62145325 CTAGGCATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (23 bp):
AAAAAAAAAGAAGAGAAAGAAAG
Found at i:62145310 original size:18 final size:18
Alignment explanation
Indices: 62145289--62145323 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
62145279 AAAAGTAGAA
62145289 AAGA-AAAGAAAAGAAAAG
1 AAGAGAAAG-AAAGAAAAG
62145307 AAGAGAAAGAAAGAAAA
1 AAGAGAAAGAAAGAAAA
62145324 ACTAGGCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (18 bp):
AAGAGAAAGAAAGAAAAG
Found at i:62148363 original size:22 final size:22
Alignment explanation
Indices: 62148332--62148375 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
62148322 TACACCAAAA
* *
62148332 TAGGCTTTTAGCGGCGCTTTTT
1 TAGGCCTTTAGCGACGCTTTTT
62148354 TAGGCCTTTAGCGACGCTTTTT
1 TAGGCCTTTAGCGACGCTTTTT
62148376 AGCGCCACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.11, C:0.20, G:0.25, T:0.43
Consensus pattern (22 bp):
TAGGCCTTTAGCGACGCTTTTT
Found at i:62148511 original size:43 final size:43
Alignment explanation
Indices: 62148447--62148609 Score: 236
Period size: 43 Copynumber: 3.8 Consensus size: 43
62148437 GCGTCGCTAA
* * *
62148447 CTTTAGCGGCGCTTTTTCCACAAACGCCACTAAAGACTAAGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCATGAC
*
62148490 CTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAAACCATGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCATGAC
* * *
62148533 CTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCATGGC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCATGAC
* **
62148576 TTTTAGCGGCGCTTTTCAAACAAACGCCACTAAA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCACTAAA
62148610 AATATATCTT
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 107 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCATGAC
Found at i:62152021 original size:14 final size:14
Alignment explanation
Indices: 62152002--62152038 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
62151992 TAAAACCCTA
*
62152002 AATCCCTAACTCCT
1 AATCCCTAACTCAT
62152016 AATCCCTAACTCAT
1 AATCCCTAACTCAT
*
62152030 AACCCCTAA
1 AATCCCTAA
62152039 ACCTTAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.35, C:0.41, G:0.00, T:0.24
Consensus pattern (14 bp):
AATCCCTAACTCAT
Found at i:62152054 original size:21 final size:21
Alignment explanation
Indices: 62151994--62152070 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 21
62151984 CCGACCCTTA
*
62151994 AAACCCTAAATCCCTAACTCCT
1 AAACCCTAAATCCC-AACCCCT
* * **
62152016 AATCCCTAACTCATAACCCCT
1 AAACCCTAAATCCCAACCCCT
* *
62152037 AAACCTTAAATCCCAACCCTT
1 AAACCCTAAATCCCAACCCCT
*
62152058 AAACCAT-AATCCC
1 AAACCCTAAATCCC
62152071 TAAATCTATA
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
20 6 0.14
21 27 0.63
22 10 0.23
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.22
Consensus pattern (21 bp):
AAACCCTAAATCCCAACCCCT
Found at i:62153213 original size:41 final size:40
Alignment explanation
Indices: 62153137--62153328 Score: 251
Period size: 41 Copynumber: 4.7 Consensus size: 40
62153127 AATATTTTTT
* **
62153137 GCGGCGCTTTTTAAAAAACGCCGCTAAA-AATAGAGCATTA
1 GCGGCGC-TTTTCAAAAACGCCGCTAAAGACCAGAGCATTA
62153177 GCGGCGCTTTATCAAAAACGCCGCTAAAGACCAGAGCATTA
1 GCGGCGCTTT-TCAAAAACGCCGCTAAAGACCAGAGCATTA
* *
62153218 GCGGCGCTTCTTCAAAAATGCCGCTAAAGACCCGAGCATTA
1 GCGGCGCTT-TTCAAAAACGCCGCTAAAGACCAGAGCATTA
* * *
62153259 GCGGCGCTTCTCCAAAAATGCCGCTAAAGACCCGAGCATTA
1 GCGGCGCTT-TTCAAAAACGCCGCTAAAGACCAGAGCATTA
*
62153300 GCAGCGCTTTTCGAAAAACGCCGCTAAAG
1 GCGGCGCTTTTC-AAAAACGCCGCTAAAG
62153329 CCCTGAAAAA
Statistics
Matches: 139, Mismatches: 9, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 25 0.18
41 110 0.79
42 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19
Consensus pattern (40 bp):
GCGGCGCTTTTCAAAAACGCCGCTAAAGACCAGAGCATTA
Found at i:62153428 original size:39 final size:38
Alignment explanation
Indices: 62153366--62153500 Score: 126
Period size: 40 Copynumber: 3.4 Consensus size: 38
62153356 TGTGCTTGGG
* ** * * *
62153366 TTTTTTGCGGCGCTTTTTGAAAAATGCCACTAATGTTCA
1 TTTTTAGCGGCG-TTTTCCAAAAACGCCGCTAATGTTGA
* *
62153405 TTTTTAGCGGCGTTTTCCAAAAAACGCCGCTAATACTGGA
1 TTTTTAGCGGCGTTTTCC-AAAAACGCCGCTAAT-GTTGA
* * *
62153445 TCTTTAGCGGCGTTTTTCCTAAAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGCG-TTTTCCAAAAACGCCGCTAATG-TTGA
62153485 TTTTTAGCGGCGTTTT
1 TTTTTAGCGGCGTTTT
62153501 TTGTTCAAAC
Statistics
Matches: 78, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
38 4 0.05
39 28 0.36
40 40 0.51
41 6 0.08
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (38 bp):
TTTTTAGCGGCGTTTTCCAAAAACGCCGCTAATGTTGA
Found at i:62153501 original size:40 final size:41
Alignment explanation
Indices: 62153385--62153501 Score: 141
Period size: 40 Copynumber: 2.9 Consensus size: 41
62153375 GCGCTTTTTG
* * *
62153385 AAAAATGCCACTAATG-TTCATTTTTAGCGGCG-TTTTCCA
1 AAAAACGCCGCTAATGCTTGATTTTTAGCGGCGTTTTTCCA
* * *
62153424 AAAAACGCCGCTAATACTGGATCTTTAGCGGCGTTTTTCC-
1 AAAAACGCCGCTAATGCTTGATTTTTAGCGGCGTTTTTCCA
* *
62153464 TAAAGCGCCGCTAATGCTTGATTTTTAGCGGCGTTTTT
1 AAAAACGCCGCTAATGCTTGATTTTTAGCGGCGTTTTT
62153502 TGTTCAAACG
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
39 13 0.20
40 46 0.71
41 6 0.09
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (41 bp):
AAAAACGCCGCTAATGCTTGATTTTTAGCGGCGTTTTTCCA
Found at i:62160624 original size:47 final size:45
Alignment explanation
Indices: 62160554--62160662 Score: 114
Period size: 47 Copynumber: 2.4 Consensus size: 45
62160544 AGCTTAAGAT
62160554 CGAATGGCCAATGTGATGAATGTGAAAGT-ACATACATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGA-AT--ATGTGATAAGGC
** *
62160601 CGAATGGTTAATGTGAT-ATATGTGTAAGTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGTGAATATGTGATAAGGC
* *
62160646 TGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
62160663 AAAATGTGCA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
45 19 0.37
46 6 0.12
47 26 0.50
48 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.28
Consensus pattern (45 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGAATATGTGATAAGGC
Found at i:62160788 original size:39 final size:40
Alignment explanation
Indices: 62160733--62160817 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
62160723 AAATGAATTG
* * * *
62160733 TGCTGAGATTGCATCCGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
* *
62160772 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
62160812 TGCTGG
1 TGCTGG
62160818 TGAATTAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.18, C:0.22, G:0.32, T:0.28
Consensus pattern (40 bp):
TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:62178927 original size:49 final size:49
Alignment explanation
Indices: 62178706--62179020 Score: 448
Period size: 47 Copynumber: 6.6 Consensus size: 49
62178696 CCCTTCGGGA
* * * * *
62178706 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62178753 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62178800 CTTATCAC--ATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62178847 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62178894 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62178943 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62178992 CTTATCAAATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
62179021 TATTCAAATA
Statistics
Matches: 248, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 133 0.54
49 114 0.46
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62181851 original size:26 final size:29
Alignment explanation
Indices: 62181822--62181881 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
62181812 GGTAACTTAT
*
62181822 CCAAAATA-CTGATAT-CATGACT-GAAG
1 CCAAAATAGCCGATATGCATGACTAGAAG
* *
62181848 CCAAATTAGCCGATATGCATGGCTAGAAG
1 CCAAAATAGCCGATATGCATGACTAGAAG
62181877 CCAAA
1 CCAAA
62181882 TAAATTTATC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.25
27 6 0.21
28 6 0.21
29 9 0.32
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (29 bp):
CCAAAATAGCCGATATGCATGACTAGAAG
Found at i:62187072 original size:78 final size:78
Alignment explanation
Indices: 62186942--62187109 Score: 248
Period size: 78 Copynumber: 2.2 Consensus size: 78
62186932 ACTGACTTAC
62186942 ACCACACGCCCGGAGACACACCCGTGTGCCTTGGCCGTGGGAAAACTAGAGGGGTTACTAACTTC
1 ACCACACGCCCGGAGACACACCCGTGTGCCTTGGCCGTGGGAAAACTAGAGGGGTTACTAACTTC
62187007 GGTCAAACGACCA
66 GGTCAAACGACCA
** * * * *
62187020 ACCACACGGTCGGAGACACGCCCGTGTGCCTTGGCCGTGGGAAAACTGGAGGGGTTACTGACTTG
1 ACCACACGCCCGGAGACACACCCGTGTGCCTTGGCCGTGGGAAAACTAGAGGGGTTACTAACTTC
* *
62187085 GGTCACAC-AGCTA
66 GGTCAAACGA-CCA
62187098 ACCACACGCCCG
1 ACCACACGCCCG
62187110 TGTGTCTAAC
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
77 1 0.01
78 78 0.99
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.15
Consensus pattern (78 bp):
ACCACACGCCCGGAGACACACCCGTGTGCCTTGGCCGTGGGAAAACTAGAGGGGTTACTAACTTC
GGTCAAACGACCA
Found at i:62189605 original size:46 final size:46
Alignment explanation
Indices: 62189538--62189709 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
62189528 AACCCGCCCC
* * *
62189538 TAAGTGAACTCGGAATCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* *
62189584 TAAGTGAACTCGGAGTCAACTCAACGAGTTCGGATGCCTATTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * ** * *
62189632 TCA-CGAACTCGGACTCAACTCAACGAGTTAAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
*
62189677 TAAGTGAACTCGGACTCGACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
62189710 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 56 0.55
47 25 0.25
48 3 0.03
49 2 0.02
50 6 0.06
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:62189651 original size:93 final size:93
Alignment explanation
Indices: 62189543--62189713 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
62189533 GCCCCTAAGT
** * * * *
62189543 GAACTCGGAATCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGAGTCAACTCAA
1 GAACTCGGAATCAACTCAACGAGCTAAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62189608 CGAGTTCGGATGCCTATTTACATCTCAC
66 CGAGTTCGGATGCCTATTTACATCTCAC
* * *
62189636 GAACTCGGACTCAACTCAACGAGTTAAGACATTCGCATCCATAAGTGAACTCGGACTCGACTCAA
1 GAACTCGGAATCAACTCAACGAGCTAAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62189701 CGAGTTCGGATGC
66 CGAGTTCGGATGC
62189714 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGAATCAACTCAACGAGCTAAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTATTTACATCTCAC
Found at i:62194640 original size:64 final size:63
Alignment explanation
Indices: 62194559--62194742 Score: 190
Period size: 67 Copynumber: 2.9 Consensus size: 63
62194549 AGACATTATG
*
62194559 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * * *
62194622 TATGTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGGACACCATGTAGAGAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
62194687 TA
62 TA
** * * * *
62194689 AACTAGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
62194743 CGAACTATAT
Statistics
Matches: 96, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 19 0.20
67 29 0.30
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:62196295 original size:20 final size:21
Alignment explanation
Indices: 62196270--62196308 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
62196260 TTATAATTAT
62196270 CATTAAAAATCAA-TATAAAG
1 CATTAAAAATCAATTATAAAG
62196290 CATTAAAAATCAATTATAA
1 CATTAAAAATCAATTATAA
62196309 TAATGCTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (21 bp):
CATTAAAAATCAATTATAAAG
Found at i:62198771 original size:29 final size:29
Alignment explanation
Indices: 62198716--62198804 Score: 126
Period size: 29 Copynumber: 3.1 Consensus size: 29
62198706 GTGAGAATGA
* * *
62198716 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
62198744 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
62198773 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
62198802 ATA
1 ATA
62198805 CGAATATGAA
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 11 0.20
29 44 0.80
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:62198801 original size:58 final size:57
Alignment explanation
Indices: 62198729--62198839 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
62198719 TGAATGTGAC
* * * *
62198729 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATACAAATATGA-ATGGGCCTAATGGGCCAAATACAGGTGATT
* * **
62198787 TGGGCCTAATGGGCCATACGAATATGAATGGGGTTAATGGGCCAAATACAGGT
1 TGGGCCTAACGGGCCATACAAATATGAATGGGCCTAATGGGCCAAATACAGGT
62198840 ATGTGAATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 22 0.49
58 23 0.51
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATACAAATATGAATGGGCCTAATGGGCCAAATACAGGTGATT
Found at i:62201064 original size:28 final size:28
Alignment explanation
Indices: 62201009--62201096 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 28
62200999 AGCATGGCTG
** *
62201009 CCAG-AACAGAT-ATTGTGATAGAGTCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
* * *
62201035 CCAGATACAGATAATTGTGGCGGGGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
*
62201063 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
62201091 CCAGAA
1 CCAGAA
62201097 CACTTCCTCC
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 4 0.08
27 6 0.12
28 40 0.80
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.18
Consensus pattern (28 bp):
CCAGAAACAGATAATTGTGGCAGAGCCA
Found at i:62202376 original size:18 final size:17
Alignment explanation
Indices: 62202325--62202379 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
62202315 ATTTGGCTAT
62202325 AGAG-GAAAAGAAGAAG
1 AGAGAGAAAAGAAGAAG
*
62202341 A-AGAGAACATAGATGAAG
1 AGAGAGAA-A-AGAAGAAG
62202359 AGAGGAGAAAAGAAGAAG
1 AGA-GAGAAAAGAAGAAG
62202377 AGA
1 AGA
62202380 AAAGAATTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
15 2 0.06
16 4 0.12
17 1 0.03
18 18 0.56
19 2 0.06
20 5 0.16
ACGTcount: A:0.60, C:0.02, G:0.35, T:0.04
Consensus pattern (17 bp):
AGAGAGAAAAGAAGAAG
Found at i:62202385 original size:18 final size:18
Alignment explanation
Indices: 62202329--62202385 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
62202319 GGCTATAGAG
62202329 GAAAAGAAG-A-AGAAGA
1 GAAAAGAAGAAGAGAAGA
* *
62202345 GAACATAGATGAAGAGAGGA
1 GAA-A-AGAAGAAGAGAAGA
*
62202365 GAAAAGAAGAAGAGAAAA
1 GAAAAGAAGAAGAGAAGA
62202383 GAA
1 GAA
62202386 TTGTCAGAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 3 0.09
17 1 0.03
18 18 0.56
19 2 0.06
20 8 0.25
ACGTcount: A:0.63, C:0.02, G:0.32, T:0.04
Consensus pattern (18 bp):
GAAAAGAAGAAGAGAAGA
Found at i:62207971 original size:14 final size:14
Alignment explanation
Indices: 62207952--62207985 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
62207942 TCAGGAGTCT
62207952 CACTTTCAGCTACA
1 CACTTTCAGCTACA
*
62207966 CACTTTCGGCTACA
1 CACTTTCAGCTACA
62207980 CACTTT
1 CACTTT
62207986 TGGATTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.35, G:0.09, T:0.32
Consensus pattern (14 bp):
CACTTTCAGCTACA
Found at i:62211020 original size:56 final size:56
Alignment explanation
Indices: 62210934--62211109 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
62210924 ACAAGGGATG
* *
62210934 ATGGGAAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
62210990 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
62211046 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
62211102 ATGGGCAA
1 ATGGGCAA
62211110 TAAACTAATA
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:62212334 original size:39 final size:41
Alignment explanation
Indices: 62212234--62212417 Score: 204
Period size: 40 Copynumber: 4.6 Consensus size: 41
62212224 TCGAATGATG
* * *
62212234 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
62212273 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
*
62212313 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
62212352 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* * *
62212392 ACCGGGCTATGTCCCGAAGCCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62212418 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
39 46 0.37
40 70 0.56
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:62212369 original size:79 final size:80
Alignment explanation
Indices: 62212234--62212415 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 80
62212224 TCGAATGATG
* * *
62212234 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
62212298 GTGCGAGTTACTA-A
66 GTACGAGTTACTATA
* * * **
62212312 TTCCGGGCTAAGCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
62212375 TTGTACGAGTTACTATA
64 TTGTACGAGTTACTATA
* * *
62212392 ACCGGGCTATGTCCCGAAGCCATT
1 TCCGGGCTAAG-CCCGAAGGCATT
62212416 TGAACGAGTA
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 68 0.78
80 18 0.21
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGTTACTATA
Found at i:62212439 original size:79 final size:79
Alignment explanation
Indices: 62212286--62212450 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
62212276 GGACTAAGAT
* * * **
62212286 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTACGAGTTACTAATACCGGGCTAAGCCCGAAGCCATTGGAACGAGTTACTAA
*
62212351 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
62212365 CCGAAGGCATTTGTACGAGTTACT-ATAACCGGGCTATGTCCCGAAGCCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTACGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGCCATTGGAACGAGTTA-C
* *
62212428 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
62212444 CCGAAGG
1 CCGAAGG
62212451 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGTTACTAATACCGGGCTAAGCCCGAAGCCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:62218515 original size:39 final size:40
Alignment explanation
Indices: 62218470--62218637 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
62218460 CGGGGTTTAG
* * *
62218470 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
62218509 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
62218549 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
62218589 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
62218630 CCGGATAT
1 CCGGATAT
62218638 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:62218620 original size:41 final size:40
Alignment explanation
Indices: 62218493--62218637 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
62218483 CTCGCACAAG
* * * * *
62218493 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
62218533 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
62218573 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
62218614 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
62218638 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:62225685 original size:40 final size:40
Alignment explanation
Indices: 62225638--62225782 Score: 173
Period size: 40 Copynumber: 3.6 Consensus size: 40
62225628 CTCGCACAAG
* * * *
62225638 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* **
62225678 GCCTTCGGGGCTTAGCCCAAATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
62225718 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
62225759 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
62225783 CATTCGAGTA
Statistics
Matches: 86, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
40 57 0.66
41 29 0.34
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:62246077 original size:40 final size:40
Alignment explanation
Indices: 62246015--62246232 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
62246005 CGGATGATAA
* *
62246015 CCGGGCTAAGTCCCGTAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
* *
62246055 CCGGGCTAAGCCCCGAAAGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
* *
62246095 CCGGGCTAAGTCCCGAAGGCATTTGTGATGGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* *
62246135 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* * *
62246175 CCGGGCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
*
62246215 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
62246233 TACTTGGTTT
Statistics
Matches: 158, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 17 0.11
40 139 0.88
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:62247357 original size:37 final size:37
Alignment explanation
Indices: 62247302--62247410 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
62247292 AGCTCAGACG
**
62247302 AAATCTCCACACAAAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
62247339 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
62247376 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
62247411 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:62247645 original size:46 final size:46
Alignment explanation
Indices: 62247560--62247648 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
62247550 TATATACACA
* * * *
62247560 TCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCCG
1 TCTCATACACATCTCACATTAGCCATTCGACTTCACCACATATCCG
* * *
62247606 TCTCATACACATTTCGCATTAGCCATTCGACTTCGCCACATAT
1 TCTCATACACATCTCACATTAGCCATTCGACTTCACCACATAT
62247649 ATACACTTTC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
TCTCATACACATCTCACATTAGCCATTCGACTTCACCACATATCCG
Found at i:62247693 original size:47 final size:47
Alignment explanation
Indices: 62247642--62247906 Score: 406
Period size: 47 Copynumber: 5.6 Consensus size: 47
62247632 TCGACTTCGC
* * *
62247642 CACATATATACACT-TTCACGTTCATCACATTGGCCATTCTGCCTTAT
1 CACATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTAT
*
62247689 CACATATATGCATGTTCACATTCATCACATTGGTCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
62247736 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* * *
62247783 CACACATATGCATGCTCACATTTATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
*
62247830 CACATATATGCATGTTCATATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* * **
62247877 CACACATATACACATTCACATTCATCACAT
1 CACATATATGCATGTTCACATTCATCACAT
62247907 AAAATCCTAA
Statistics
Matches: 200, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 199 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
Found at i:62251759 original size:40 final size:40
Alignment explanation
Indices: 62251715--62252058 Score: 465
Period size: 40 Copynumber: 8.6 Consensus size: 40
62251705 CCAGCATGAT
* * * * *
62251715 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* ** * *
62251755 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
62251795 TGCTCTTCGGAACTTAGCCCAGATGCATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
62251835 T-CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
62251874 TGCTCTTCGGGACTTAGTCCGGATACTTCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
62251914 TGCTCTTTGGGACTTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
62251954 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
62251994 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
62252034 TGCTCTTCGGGGTTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATA
62252059 TATATAACTC
Statistics
Matches: 267, Mismatches: 36, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
39 35 0.13
40 232 0.87
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:62253393 original size:37 final size:37
Alignment explanation
Indices: 62253333--62253441 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
62253323 AGCTCAGACG
**
62253333 AAATCTCCACACAAAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
62253370 AAATCTCCACACGTAGTCGTCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
62253407 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
62253442 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:62253678 original size:46 final size:46
Alignment explanation
Indices: 62253593--62253681 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
62253583 TATATACACA
* * *
62253593 TCTCATACATATCTCACATTAGCCATTTGACTTTACCACATATCCG
1 TCTCATACACATCTCACATTAGCCATTCGACTTCACCACATATCCG
* * * *
62253639 TCTCATACACATTTCGCATTAGCCATTCGGCTTCGCCACATAT
1 TCTCATACACATCTCACATTAGCCATTCGACTTCACCACATAT
62253682 ATACACTTTC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
TCTCATACACATCTCACATTAGCCATTCGACTTCACCACATATCCG
Found at i:62253726 original size:47 final size:47
Alignment explanation
Indices: 62253675--62253939 Score: 406
Period size: 47 Copynumber: 5.6 Consensus size: 47
62253665 TCGGCTTCGC
* * * *
62253675 CACATATATACACT-TTCACGTTCATCACATTGGTCATTCCGCCTTAT
1 CACATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTAT
62253722 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
*
62253769 CAGATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* *
62253816 CACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
*
62253863 CACATATATGCATGTTCATATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* * **
62253910 CACACATATACACATTCACATTCATCACAT
1 CACATATATGCATGTTCACATTCATCACAT
62253940 AAAATCCTAA
Statistics
Matches: 201, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 200 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
Found at i:62253817 original size:22 final size:22
Alignment explanation
Indices: 62253792--62253867 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
62253782 GTTCACATTC
62253792 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
62253814 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
62253838 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
62253861 ATCACAT
1 ATCACAT
62253868 ATATGCATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:62262640 original size:31 final size:31
Alignment explanation
Indices: 62262600--62262714 Score: 187
Period size: 31 Copynumber: 3.7 Consensus size: 31
62262590 TTAGTCTTGG
*
62262600 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
62262630 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
62262661 CATATTACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
62262692 CATATCATTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
62262715 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 5 0.06
31 73 0.94
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:62262785 original size:42 final size:42
Alignment explanation
Indices: 62262738--62262829 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 42
62262728 TGGCCTTTAG
62262738 GCCCATTTCAATATCACATGTAATGTCAATGGA-TGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAAT-GATTGTATGCAA
62262780 GCCCATTTCAATATCACATGTAATGTCAATGATTGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGATTGTATGCAA
62262822 GCCCATTT
1 GCCCATTT
62262830 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
41 2 0.04
42 47 0.96
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGATTGTATGCAA
Found at i:62263005 original size:25 final size:25
Alignment explanation
Indices: 62262969--62263045 Score: 95
Period size: 25 Copynumber: 3.2 Consensus size: 25
62262959 GGCCTAGTCT
62262969 CTTT-TAAT-AACTGGGGCAAAGCC
1 CTTTCTAATAAACTGGGGCAAAGCC
62262992 CTTTCTAATAAACTGGGGCAAAGCC
1 CTTTCTAATAAACTGGGGCAAAGCC
*** * *
62263017 CTTTCCGGTAAACTAGGGCAGAGCC
1 CTTTCTAATAAACTGGGGCAAAGCC
62263042 CTTT
1 CTTT
62263046 TAGCACTTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.09
24 4 0.09
25 39 0.83
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (25 bp):
CTTTCTAATAAACTGGGGCAAAGCC
Found at i:62263887 original size:27 final size:27
Alignment explanation
Indices: 62263857--62263921 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
62263847 GGGCATATTC
62263857 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
62263884 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
62263911 GTCTTTTTACC
1 GTCATTTTACC
62263922 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:62264079 original size:27 final size:27
Alignment explanation
Indices: 62264038--62264108 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
62264028 TAGAAAGTCA
* **
62264038 AGGGTATTTTTGTAATTTTGGAAATT-
1 AGGGTATTTTGGTAATTTTACAAATTG
62264064 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTACAAATTG
*
62264092 AGGGTATTTCGGTAATT
1 AGGGTATTTTGGTAATT
62264109 CTATCTTACA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
26 1 0.03
27 37 0.95
28 1 0.03
ACGTcount: A:0.27, C:0.03, G:0.25, T:0.45
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATTG
Found at i:62264174 original size:27 final size:27
Alignment explanation
Indices: 62264143--62264337 Score: 212
Period size: 27 Copynumber: 7.2 Consensus size: 27
62264133 ATTTCATAAC
* *
62264143 CGAGGGTAAAACGGTAATTTTGTAAA-
1 CGAGGGTAAAACGGTAATTCTATAAAT
** * *
62264169 CTGAGGGTAAAATAGTAATTTTGTAAAT
1 C-GAGGGTAAAACGGTAATTCTATAAAT
* *
62264197 CGAGGGTAAAACAGTAATTCTATAATT
1 CGAGGGTAAAACGGTAATTCTATAAAT
***
62264224 CGAGGGTAAAATTATAATTCTATAAAT
1 CGAGGGTAAAACGGTAATTCTATAAAT
* * *
62264251 CGAGGGTAAAACGATAATTTTGTAAAT
1 CGAGGGTAAAACGGTAATTCTATAAAT
*
62264278 CGAGGGTGAAACGGTAATTCTATAAAT
1 CGAGGGTAAAACGGTAATTCTATAAAT
* * *
62264305 TGAGGGTAAAATGGTAATTCTACAAAT
1 CGAGGGTAAAACGGTAATTCTATAAAT
62264332 CGAGGG
1 CGAGGG
62264338 CATTTAGTAA
Statistics
Matches: 144, Mismatches: 23, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
CGAGGGTAAAACGGTAATTCTATAAAT
Found at i:62264257 original size:81 final size:81
Alignment explanation
Indices: 62264171--62264337 Score: 248
Period size: 81 Copynumber: 2.1 Consensus size: 81
62264161 TTTGTAAACT
62264171 GAGGGTAAAATAG-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTAT-AATTCGAGGGTAAA
1 GAGGGTAAAA-AGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATT-GAGGGTAAA
* *
62264234 ATTATAATTCTATAAATC
64 ATGATAATTCTACAAATC
* * *
62264252 GAGGGTAAAACGATAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATTGAGGGTAAAAT
1 GAGGGTAAAAAGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAAT
*
62264317 GGTAATTCTACAAATC
66 GATAATTCTACAAATC
62264333 GAGGG
1 GAGGG
62264338 CATTTAGTAA
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
80 1 0.01
81 73 0.94
82 4 0.05
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
GAGGGTAAAAAGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAAT
GATAATTCTACAAATC
Found at i:62267639 original size:113 final size:113
Alignment explanation
Indices: 62267494--62267725 Score: 306
Period size: 113 Copynumber: 2.1 Consensus size: 113
62267484 TTTAAAAATA
* * * * *
62267494 CCGCTAAAAGATTCAGCCGAACGACATTGTTTACATTGAGCTTCCATGGAATTAGAGGCGCTTTC
1 CCGCTAAAAGATTAAGCCGAACAACATCGTTTAAATCGAGCTTCCATGGAATTAGAGGCGCTTTC
*
62267559 CTAAAAATGC-CGCAA-AAATCAAGCATTAGCGGCGTTTTTAAGAAAGCG
66 CTAAAAA--CACGCAATAAATCAAGCATTAGCGGAGTTTTTAAGAAAGCG
** *
62267607 CCGCTAAAAGATTAAGCCGAACAACATCGTTTAAATCGAGCTTCTGTGGAATTAGCGGCGCTTTC
1 CCGCTAAAAGATTAAGCCGAACAACATCGTTTAAATCGAGCTTCCATGGAATTAGAGGCGCTTTC
* * * * *
62267672 CTAAACACACGCAATATATCGAGCATTAGCGGAGTTTTTAGGAAAGTG
66 CTAAAAACACGCAATAAATCAAGCATTAGCGGAGTTTTTAAGAAAGCG
62267720 CCGCTA
1 CCGCTA
62267726 TAAGTCGACC
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
111 1 0.01
112 5 0.05
113 97 0.94
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (113 bp):
CCGCTAAAAGATTAAGCCGAACAACATCGTTTAAATCGAGCTTCCATGGAATTAGAGGCGCTTTC
CTAAAAACACGCAATAAATCAAGCATTAGCGGAGTTTTTAAGAAAGCG
Found at i:62268073 original size:14 final size:14
Alignment explanation
Indices: 62268056--62268094 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
62268046 TAAAGATTGG
62268056 GGTTTAGGGTTGAT
1 GGTTTAGGGTTGAT
* * *
62268070 GGTTTATGATTTAT
1 GGTTTAGGGTTGAT
62268084 GGTTTAGGGTT
1 GGTTTAGGGTT
62268095 TTGGGGATTA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.36, T:0.49
Consensus pattern (14 bp):
GGTTTAGGGTTGAT
Found at i:62269637 original size:39 final size:40
Alignment explanation
Indices: 62269592--62269816 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
62269582 GCTCCTCGTT
* * * *
62269592 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
62269632 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
62269671 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
62269711 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
62269751 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
62269792 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
62269817 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 104 0.66
41 15 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:62269825 original size:41 final size:41
Alignment explanation
Indices: 62269748--62269825 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
62269738 TTTGTATCTC
* * *
62269748 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
62269789 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
62269826 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:62277549 original size:40 final size:39
Alignment explanation
Indices: 62277461--62277680 Score: 196
Period size: 40 Copynumber: 5.5 Consensus size: 39
62277451 CTCGTTCAAA
* * * * *
62277461 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAAT
1 GCCTTCGGGACTTAACCCGGATTTAGTGACTCGCACAAT
*
62277500 GCCTTCGGGACTTAACCCGGATTTAATGACTCGCACGAAT
1 GCCTTCGGGACTTAACCCGGATTTAGTGACTCGCAC-AAT
*
62277540 GCCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAG
1 GCCTTCGGGACTTAACCCGGATTTAGTGA-CTCGCAC-AAT
*
62277580 GCCTTCGGGGCTTAACCCGGAATTT-GT-ATCTCGCACAAAT
1 GCCTTCGGGACTTAACCCGG-ATTTAGTGA-CTCGCAC-AAT
** * * * * *
62277620 GCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAA
1 GCCTTCGGGA-CTTAACCCGGATTTAGTGAC-TCGCACAAT
*
62277660 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
62277681 CAGCATTCAA
Statistics
Matches: 154, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.23
40 105 0.68
41 13 0.08
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGACTTAACCCGGATTTAGTGACTCGCACAAT
Found at i:62277689 original size:41 final size:41
Alignment explanation
Indices: 62277612--62277689 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
62277602 TTTGTATCTC
* * *
62277612 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
62277653 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
62277690 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:62281384 original size:28 final size:26
Alignment explanation
Indices: 62281343--62281403 Score: 86
Period size: 28 Copynumber: 2.3 Consensus size: 26
62281333 TGGAGGAAGC
*
62281343 GTTCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTACCACAAA-ATCT
*
62281370 GTTTCTGGTGGCTCTATCACAAAATCT
1 G-TTCTGGTGGCTCTACCACAAAATCT
62281397 GTTCTGG
1 GTTCTGG
62281404 CAGCCATGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 6 0.19
27 6 0.19
28 19 0.61
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTACCACAAAATCT
Found at i:62282654 original size:22 final size:21
Alignment explanation
Indices: 62282545--62282656 Score: 68
Period size: 21 Copynumber: 5.0 Consensus size: 21
62282535 TCAACACCAG
*
62282545 ACCCTAAATCTCAAATCATAA
1 ACCCTAAAACTCAAATCATAA
62282566 ACCCTTAAAATTACTCTAAA-CAATAA
1 ACCC-T-AAA--ACTC-AAATC-ATAA
* * * *
62282592 ACCCTAACCACT-ACACCTTAA
1 ACCCTAA-AACTCAAATCATAA
*
62282613 ACCCTAAATCTCAAATCATAA
1 ACCCTAAAACTCAAATCATAA
62282634 ACCCTTAAAACTCCAAA-CATAA
1 ACCC-TAAAACT-CAAATCATAA
62282656 A
1 A
62282657 ACCATAACCC
Statistics
Matches: 70, Mismatches: 10, Indels: 21
0.69 0.10 0.21
Matches are distributed among these distances:
20 2 0.03
21 26 0.37
22 14 0.20
23 10 0.14
24 2 0.03
25 5 0.07
26 11 0.16
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.22
Consensus pattern (21 bp):
ACCCTAAAACTCAAATCATAA
Found at i:62285294 original size:46 final size:44
Alignment explanation
Indices: 62285154--62285294 Score: 126
Period size: 46 Copynumber: 3.0 Consensus size: 44
62285144 GCCCATAAGC
* *
62285154 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
62285201 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
62285247 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
62285293 GA
1 GA
62285295 CATGTCACTT
Statistics
Matches: 78, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 33 0.42
47 30 0.38
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:62292766 original size:93 final size:93
Alignment explanation
Indices: 62292639--62292810 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
62292629 CACCCATAAG
* *
62292639 CGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
62292704 ACGAGTTCGGATGCCTGTTTACATCTCA
66 ACGAGTTCGGATGCCTGTTTACATCTCA
* *
62292732 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
62292797 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
62292811 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTGTTTACATCTCA
Found at i:62292807 original size:46 final size:46
Alignment explanation
Indices: 62292632--62292807 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
62292622 TGTAACCCAC
* * *
62292632 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * * **
62292678 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTGTTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTCGCAT
*
62292728 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
62292771 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
62292808 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 61 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:62296275 original size:27 final size:29
Alignment explanation
Indices: 62296244--62296354 Score: 100
Period size: 27 Copynumber: 4.1 Consensus size: 29
62296234 ATCTTAATGT
62296244 TAAATATATATCAT-ATA-ATAACTTACA
1 TAAATATATATCATAATACATAACTTACA
62296271 TAAATATATATCATAATACATAACTTACA
1 TAAATATATATCATAATACATAACTTACA
*
62296300 -AAA-CT-TA-CATAATACAT-A---A-A
1 TAAATATATATCATAATACATAACTTACA
*
62296320 TATATATCATATCATAACTTACATAACTTACA
1 TAAATAT-ATATCATAA--TACATAACTTACA
62296352 TAA
1 TAA
62296355 TACATAAATT
Statistics
Matches: 66, Mismatches: 4, Indels: 23
0.71 0.04 0.25
Matches are distributed among these distances:
20 1 0.02
21 3 0.05
22 1 0.02
24 3 0.05
25 15 0.23
26 2 0.03
27 20 0.30
28 7 0.11
29 10 0.15
31 1 0.02
32 3 0.05
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.34
Consensus pattern (29 bp):
TAAATATATATCATAATACATAACTTACA
Found at i:62296310 original size:25 final size:25
Alignment explanation
Indices: 62296282--62296361 Score: 75
Period size: 25 Copynumber: 3.5 Consensus size: 25
62296272 AAATATATAT
62296282 CATAATACATAACTTACAAAACTTA
1 CATAATACATAACTTACAAAACTTA
* * *
62296307 CATAATACATAA-ATA-TATA--T-
1 CATAATACATAACTTACAAAACTTA
*
62296327 CAT-AT-CATAACTTACATAACTTA
1 CATAATACATAACTTACAAAACTTA
62296350 CATAATACATAA
1 CATAATACATAA
62296362 ATTTATATCA
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
18 5 0.12
19 4 0.10
20 4 0.10
21 1 0.02
22 1 0.02
23 5 0.12
24 4 0.10
25 17 0.41
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.31
Consensus pattern (25 bp):
CATAATACATAACTTACAAAACTTA
Found at i:62296344 original size:9 final size:9
Alignment explanation
Indices: 62296332--62296447 Score: 78
Period size: 9 Copynumber: 13.1 Consensus size: 9
62296322 TATATCATAT
62296332 CATAACTTA
1 CATAACTTA
62296341 CATAACTTA
1 CATAACTTA
62296350 CATAA--TA
1 CATAACTTA
*
62296357 CATAAATT-
1 CATAACTTA
* * *
62296365 TATATCATA
1 CATAACTTA
62296374 TCATAACTTA
1 -CATAACTTA
* *
62296384 CATACCTCA
1 CATAACTTA
*
62296393 CATAAATGTA
1 CATAACT-TA
* * *
62296403 TATCA-TAA
1 CATAACTTA
62296411 CATAACTTA
1 CATAACTTA
62296420 CATAACTTA
1 CATAACTTA
*
62296429 CAAAACTTA
1 CATAACTTA
*
62296438 CTTAACTTA
1 CATAACTTA
62296447 C
1 C
62296448 GTAATACATA
Statistics
Matches: 80, Mismatches: 21, Indels: 12
0.71 0.19 0.11
Matches are distributed among these distances:
7 7 0.09
8 8 0.10
9 55 0.69
10 10 0.12
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:62296353 original size:18 final size:18
Alignment explanation
Indices: 62296287--62296447 Score: 93
Period size: 18 Copynumber: 9.2 Consensus size: 18
62296277 TATATCATAA
*
62296287 TACATAACTTACAAAACT
1 TACATAACTTACATAACT
*
62296305 TACATAA--TACATAA-A
1 TACATAACTTACATAACT
* * *
62296320 TATATATCATATCATAACT
1 TACATAACTTA-CATAACT
62296339 TACATAACTTACATAA--
1 TACATAACTTACATAACT
* * * *
62296355 TACATAAATT-TATATCA
1 TACATAACTTACATAACT
*
62296372 TATCATAACTTACATACCT
1 TA-CATAACTTACATAACT
* * * *
62296391 CACATAAATGTATATCA-T
1 TACATAACT-TACATAACT
*
62296409 AACATAACTTACATAACT
1 TACATAACTTACATAACT
* *
62296427 TACAAAACTTACTTAACT
1 TACATAACTTACATAACT
62296445 TAC
1 TAC
62296448 GTAATACATA
Statistics
Matches: 106, Mismatches: 27, Indels: 20
0.69 0.18 0.13
Matches are distributed among these distances:
15 8 0.08
16 15 0.14
17 9 0.08
18 57 0.54
19 17 0.16
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.34
Consensus pattern (18 bp):
TACATAACTTACATAACT
Found at i:62296386 original size:43 final size:43
Alignment explanation
Indices: 62296267--62296430 Score: 216
Period size: 43 Copynumber: 3.9 Consensus size: 43
62296257 TATAATAACT
*
62296267 TACATAAATATATATCATAATACATAACTTACAAAACTTACATAA
1 TACATAAATATATATCAT-AT-CATAACTTACATAACTTACATAA
62296312 TACATAAATATATATCATATCATAACTTACATAACTTACATAA
1 TACATAAATATATATCATATCATAACTTACATAACTTACATAA
*
62296355 TACATAAATTTATATCATATCATAACTTACAT-AC---C-T--
1 TACATAAATATATATCATATCATAACTTACATAACTTACATAA
* * *
62296391 CACATAAATGTATATCATAACATAACTTACATAACTTACA
1 TACATAAATATATATCATATCATAACTTACATAACTTACA
62296431 AAACTTACTT
Statistics
Matches: 109, Mismatches: 5, Indels: 14
0.85 0.04 0.11
Matches are distributed among these distances:
36 29 0.27
37 2 0.02
38 1 0.01
39 1 0.01
40 1 0.01
42 2 0.02
43 53 0.49
44 2 0.02
45 18 0.17
ACGTcount: A:0.48, C:0.18, G:0.01, T:0.34
Consensus pattern (43 bp):
TACATAAATATATATCATATCATAACTTACATAACTTACATAA
Found at i:62296405 original size:36 final size:34
Alignment explanation
Indices: 62296340--62296424 Score: 125
Period size: 36 Copynumber: 2.4 Consensus size: 34
62296330 ATCATAACTT
*
62296340 ACATAACTTACATAATACATAAATTTATATCATA
1 ACATAACTTACATAATACATAAATGTATATCATA
* *
62296374 TCATAACTTACATACCTCACATAAATGTATATCATA
1 ACATAACTTACATA-AT-ACATAAATGTATATCATA
62296410 ACATAACTTACATAA
1 ACATAACTTACATAA
62296425 CTTACAAAAC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
34 13 0.30
35 1 0.02
36 30 0.68
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.33
Consensus pattern (34 bp):
ACATAACTTACATAATACATAAATGTATATCATA
Found at i:62296458 original size:79 final size:76
Alignment explanation
Indices: 62296287--62296458 Score: 184
Period size: 79 Copynumber: 2.2 Consensus size: 76
62296277 TATATCATAA
* *
62296287 TACATAACTTACAAAACTTACATAATACATAAATATATATCATATCATAACTTACATAACTTACA
1 TACATAA--TACATAACTTACATAATACATAAATATATATCATAACATAACTTACATAACTTACA
* *
62296352 TAATACATAAATT
64 AAATACATAAACT
* * * *
62296365 TATATCATATCATAACTTACATACCTCACATAAATGTATATCATAACATAACTTACATAACTTAC
1 TACATAATA-CATAACTTACATA-AT-ACATAAATATATATCATAACATAACTTACATAACTTAC
*
62296430 AAAACTTAC-TTAACT
63 AAAA--TACATAAACT
*
62296445 TACGTAATACATAA
1 TACATAATACATAA
62296459 ATATACACTT
Statistics
Matches: 77, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
76 2 0.03
77 12 0.16
78 6 0.08
79 44 0.57
80 10 0.13
81 3 0.04
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.33
Consensus pattern (76 bp):
TACATAATACATAACTTACATAATACATAAATATATATCATAACATAACTTACATAACTTACAAA
ATACATAAACT
Found at i:62301946 original size:21 final size:21
Alignment explanation
Indices: 62301909--62301948 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
62301899 GAGCGGATAC
*
62301909 AGCAGCGAGGGAGGCAGAGGA
1 AGCAGCGAGGCAGGCAGAGGA
62301930 AGCAGCGATGGCA-GCAGAG
1 AGCAGCGA-GGCAGGCAGAG
62301949 CAGAGCAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.33, C:0.17, G:0.47, T:0.03
Consensus pattern (21 bp):
AGCAGCGAGGCAGGCAGAGGA
Found at i:62302218 original size:33 final size:33
Alignment explanation
Indices: 62302176--62302256 Score: 105
Period size: 31 Copynumber: 2.5 Consensus size: 33
62302166 TTAGATTTAA
* *
62302176 TGTTTTTGGTTGTATTTTTTATGCTACATTT-T
1 TGTTTTTGGTTGGATTTTTCATGCTACATTTGT
*
62302208 CTGTTTTTGGTTGGA--TTTCATGCTATATTTGT
1 -TGTTTTTGGTTGGATTTTTCATGCTACATTTGT
62302240 TGTTTTTGGTTGGATTT
1 TGTTTTTGGTTGGATTT
62302257 AATGTAGAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
31 27 0.64
32 1 0.02
33 14 0.33
ACGTcount: A:0.11, C:0.06, G:0.21, T:0.62
Consensus pattern (33 bp):
TGTTTTTGGTTGGATTTTTCATGCTACATTTGT
Found at i:62302381 original size:43 final size:43
Alignment explanation
Indices: 62302311--62302484 Score: 226
Period size: 43 Copynumber: 4.1 Consensus size: 43
62302301 TCAGCCAAAA
*
62302311 TTAGCGGC-ACTT-CCCCACAAACACCGCTAAAGGCCATGACTT
1 TTAGCGGCGA-TTCCCCCACAAACGCCGCTAAAGGCCATGACTT
62302353 TTAGCGGCGATTCCCCCACAAACGCCGCTAAAGGCCATGACTT
1 TTAGCGGCGATTCCCCCACAAACGCCGCTAAAGGCCATGACTT
* * * * * **
62302396 TTAGCGACGCTTCCCCCACAAATGCTGCTAAAAGCTGTGACTT
1 TTAGCGGCGATTCCCCCACAAACGCCGCTAAAGGCCATGACTT
* * *
62302439 TTACCGGCGCTTCCCCCACAAACGCCACTAAAGGCCATGACTT
1 TTAGCGGCGATTCCCCCACAAACGCCGCTAAAGGCCATGACTT
62302482 TTA
1 TTA
62302485 ACAGTGCTTT
Statistics
Matches: 114, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
42 10 0.09
43 104 0.91
ACGTcount: A:0.26, C:0.34, G:0.18, T:0.21
Consensus pattern (43 bp):
TTAGCGGCGATTCCCCCACAAACGCCGCTAAAGGCCATGACTT
Found at i:62302503 original size:86 final size:86
Alignment explanation
Indices: 62302347--62302515 Score: 232
Period size: 86 Copynumber: 2.0 Consensus size: 86
62302337 CTAAAGGCCA
* * *
62302347 TGACTTTTAGCGGCGATTCCCCCACAAACGCCGCTAAAGGCCATGACTTTTAGCGACGCTTCCCC
1 TGACTTTTACCGGCGATTCCCCCACAAACGCCACTAAAGGCCATGACTTTTAACGACGCTTCCCC
* **
62302412 CACAAATGCTGCTAAAAGCTG
66 AACAAATGCCACTAAAAGCTG
* * **
62302433 TGACTTTTACCGGCGCTTCCCCCACAAACGCCACTAAAGGCCATGACTTTTAAC-AGTGCTTTTC
1 TGACTTTTACCGGCGATTCCCCCACAAACGCCACTAAAGGCCATGACTTTTAACGA-CGCTTCCC
62302497 CAACAAATGCCACTAAAAG
65 CAACAAATGCCACTAAAAG
62302516 TCATGATCTT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
85 1 0.01
86 71 0.99
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (86 bp):
TGACTTTTACCGGCGATTCCCCCACAAACGCCACTAAAGGCCATGACTTTTAACGACGCTTCCCC
AACAAATGCCACTAAAAGCTG
Found at i:62304549 original size:13 final size:14
Alignment explanation
Indices: 62304533--62304563 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
62304523 GTTAAAAGTG
62304533 TAAATTAA-TAAAA
1 TAAATTAAGTAAAA
62304546 TAAATTAAGTAAAA
1 TAAATTAAGTAAAA
62304560 TAAA
1 TAAA
62304564 AATAACATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (14 bp):
TAAATTAAGTAAAA
Found at i:62306197 original size:24 final size:25
Alignment explanation
Indices: 62306170--62306218 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
62306160 AGGCCTTTGG
*
62306170 ATATG-TTGTGTAT-AATTGTTATTT
1 ATATGCTTGT-TATGAATTGGTATTT
62306194 ATATGCTTGTTATGAATTGGTATTT
1 ATATGCTTGTTATGAATTGGTATTT
62306219 GGAGTATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.24, C:0.02, G:0.18, T:0.55
Consensus pattern (25 bp):
ATATGCTTGTTATGAATTGGTATTT
Found at i:62308690 original size:40 final size:40
Alignment explanation
Indices: 62308643--62308787 Score: 191
Period size: 40 Copynumber: 3.6 Consensus size: 40
62308633 CTCGCACAAG
* * * *
62308643 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
*
62308683 GCCTTCGGGGCTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
62308723 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
62308764 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
62308788 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 61 0.68
41 29 0.32
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:62317837 original size:37 final size:37
Alignment explanation
Indices: 62317787--62317865 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
62317777 TTATTACGAA
* * *
62317787 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
62317824 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGT
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
62317861 GTCTT
1 GTCTT
62317866 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:62318062 original size:47 final size:47
Alignment explanation
Indices: 62317984--62318478 Score: 729
Period size: 47 Copynumber: 10.4 Consensus size: 47
62317974 CCTTTCGGGA
* * * * * * * *
62317984 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
62318031 CCTGTCACATATATACACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62318078 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62318125 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62318172 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62318219 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
62318266 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62318313 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62318360 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
62318411 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62318460 CTTATTACATATATACACT
1 CTTATCACATATATACACT
62318479 CTCTTGGCTG
Statistics
Matches: 419, Mismatches: 25, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
47 322 0.77
48 1 0.00
49 58 0.14
50 1 0.00
51 37 0.09
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62330331 original size:48 final size:48
Alignment explanation
Indices: 62330254--62330762 Score: 396
Period size: 48 Copynumber: 10.6 Consensus size: 48
62330244 TATGTGAGAC
* * * * * ** *
62330254 AGTGTAAGACCATGTTTGTAGCATAGCATCGGCATTAAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* * * *
62330302 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
** * * * *
62330350 AGTGTAAGATTATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* * * * * * *
62330398 AGAGTAAAACCATGTCT-GAGACATGGAATCAGCCTCAATATGTGAGGC-
1 AGTGTAAGACCATGTCTGGA-ACATGGCATCGGCCTCGAGATGAGA-GCT
* * * * * *
62330446 AGTATAAGACCATGTTTGAAACATGGCATCGACCTTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* * * * *
62330494 AGTGTAAGACCATGTCTAGTACATGGCATCGGCCTCGATATGTGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* * * * * *
62330542 ACTGTAAGATCATGTTTGGAAAATGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* * * * * *
62330590 AGTGTAAGACGATATCT-AAGACATGGCATTGGCCTCGATAT-ATGAGCC
1 AGTGTAAGACCATGTCTGGA-ACATGGCATCGGCCTCGAGATGA-GAGCT
* * * * *
62330638 AGTGTAAGACCATGTTTGAAACATGGCATCAGCATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* * * * * * *
62330686 AGTGTAAGGCCATGTCTGGAACATGGCGTCGGCCTCAACAAGTGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
* *
62330734 AGTGGAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGAACATGGCAT
62330763 TGACATTTTA
Statistics
Matches: 348, Mismatches: 105, Indels: 16
0.74 0.22 0.03
Matches are distributed among these distances:
47 6 0.02
48 336 0.97
49 6 0.02
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGAGATGAGAGCT
Found at i:62330410 original size:96 final size:96
Alignment explanation
Indices: 62330244--62330762 Score: 651
Period size: 96 Copynumber: 5.4 Consensus size: 96
62330234 CTACTAGGGG
* * * * *
62330244 TATGTGAGACAGTGTAAGACCATGTTTGTAGCATAGCATCGGCATTAAGACGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAA
62330309 GACCATGTCTGGGACATGGCATCGGCCTCAA
66 GACCATGTCTGGGACATGGCATCGGCCTCAA
* ** *
62330340 TATGTGAGCTAGTGTAAGATTATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGAGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAA
* * * *
62330405 AACCATGTCTGAGACATGGAATCAGCCTCAA
66 GACCATGTCTGGGACATGGCATCGGCCTCAA
* * * * *
62330436 TATGTGAGGCAGTATAAGACCATGTTTGAAACATGGCATCGACCTTGAGACGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAA
* * *
62330501 GACCATGTCTAGTACATGGCATCGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCAA
* * * *
62330532 TATGTGAGCCACTGTAAGATCATGTTTGGAAAATGGCATCGGCATTGAGATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAA
* * ** * *
62330597 GACGATATCTAAGACATGGCATTGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCAA
* * * *
62330628 TATATGAGCCAGTGTAAGACCATGTTTGAAACATGGCATCAGCATTGAGATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAA
* * *
62330693 GGCCATGTCTGGAACATGGCGTCGGCCTCAA
66 GACCATGTCTGGGACATGGCATCGGCCTCAA
* * * * *
62330724 CAAGTGAGCCAGTGGAAGACCATGTCTGGGACATGGCAT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
62330763 TGACATTTTA
Statistics
Matches: 358, Mismatches: 65, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 358 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCGGCCTCAA
Found at i:62333834 original size:27 final size:25
Alignment explanation
Indices: 62333779--62333842 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 25
62333769 TTAATAAATT
*
62333779 CGCACACATAGTGCATATATTCATT
1 CGCACACATAGTGCATATATTCATA
*
62333804 CGCACACATAGTGC-TAGCTTTTCCATA
1 CGCACACATAGTGCATA--TATT-CATA
62333831 CGCACACATAGT
1 CGCACACATAGT
62333843 ACTGCCCCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 2 0.06
25 14 0.41
26 3 0.09
27 15 0.44
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (25 bp):
CGCACACATAGTGCATATATTCATA
Found at i:62337927 original size:27 final size:26
Alignment explanation
Indices: 62337883--62337934 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
62337873 CTCGCTGCAA
*
62337883 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
62337910 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
62337935 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:62340231 original size:15 final size:14
Alignment explanation
Indices: 62340211--62340240 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
62340201 GTAGCTAGAC
62340211 AAAGAAAAGAGAAAA
1 AAAGAAAAGA-AAAA
62340226 AAAGAAAAGAAAAA
1 AAAGAAAAGAAAAA
62340240 A
1 A
62340241 GAGTGTGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAGAAAAGAAAAA
Found at i:62341566 original size:28 final size:28
Alignment explanation
Indices: 62341526--62341623 Score: 187
Period size: 28 Copynumber: 3.5 Consensus size: 28
62341516 TAAATTGTAC
62341526 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
62341554 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
62341582 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
62341610 AGCACTAAGTGTGC
1 AGCACTAAGTGTGC
62341624 AGACTTAATA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
28 69 1.00
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:62343462 original size:46 final size:45
Alignment explanation
Indices: 62343412--62343587 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
62343402 TGTTTGGGCA
62343412 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
62343458 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
62343505 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
62343551 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62343588 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:62343567 original size:93 final size:93
Alignment explanation
Indices: 62343408--62343579 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
62343398 AGGATGTTTG
* *
62343408 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
62343473 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
62343501 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
62343566 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
62343580 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:62346556 original size:29 final size:29
Alignment explanation
Indices: 62346471--62346553 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
62346461 TCATATATCG
* * *
62346471 TATCTTGGGTTTCTTTA-TCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGG-TTTCTC
62346500 TAT-TCTGGATTTCTTTATTCTGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGTTTCTC
62346529 TATCTTGGATTTCTTTATTC-GGTTT
1 TATCTTGGATTTCTTTATTCTGGTTT
62346554 TCTTGTTATC
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
28 6 0.12
29 36 0.75
30 6 0.12
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.58
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCTGGTTTCTC
Found at i:62346557 original size:14 final size:15
Alignment explanation
Indices: 62346480--62346557 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
62346470 GTATCTTGGG
62346480 TTTCTTTA-TCTGGA
1 TTTCTTTATTCTGGA
*
62346494 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
62346509 TTTCTTTATTCTGG-
1 TTTCTTTATTCTGGA
*
62346523 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
62346538 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
62346552 TTTCTT
1 TTTCTT
62346558 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
13 2 0.04
14 25 0.45
15 26 0.47
16 2 0.04
ACGTcount: A:0.10, C:0.17, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:62348989 original size:46 final size:45
Alignment explanation
Indices: 62348939--62349114 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
62348929 TGTTTGGGCA
62348939 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
62348985 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
62349032 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
62349078 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62349115 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:62349094 original size:93 final size:93
Alignment explanation
Indices: 62348935--62349106 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
62348925 AGGATGTTTG
* *
62348935 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
62349000 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
62349028 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
62349093 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
62349107 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:62353986 original size:43 final size:43
Alignment explanation
Indices: 62353937--62354091 Score: 172
Period size: 43 Copynumber: 3.6 Consensus size: 43
62353927 GTTACCGAGA
* *
62353937 TGTGATTACATGTAGGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
* *
62353980 TGTGATTACGTGTAAGACCA-AGTCTGGGACATTGGCATCGTTAT
1 TGTGATTACATGTAAGACCATA-TCTGGGACATTGGCATTG-TAT
* * * * *
62354024 T-CGATTTCGTGTAAGACCTTATCTGGGACAGTGGCATTG-AT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
*
62354065 ATGTGATGACATGTAAGACCATATCTG
1 -TGTGATTACATGTAAGACCATATCTG
62354092 AGATATGGCT
Statistics
Matches: 93, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 85 0.91
44 5 0.05
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
Found at i:62354875 original size:22 final size:20
Alignment explanation
Indices: 62354850--62354898 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
62354840 GTTATGTAAG
*
62354850 TTTGATGATTTTGGCATATTGA
1 TTTGATG-TTTTGG-ATATGGA
62354872 TTTGGTATGTTTTGGATATGGA
1 TTT-G-ATGTTTTGGATATGGA
62354894 TTTGA
1 TTTGA
62354899 GTAGTGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
21 1 0.04
22 12 0.50
23 7 0.29
24 3 0.12
ACGTcount: A:0.20, C:0.02, G:0.27, T:0.51
Consensus pattern (20 bp):
TTTGATGTTTTGGATATGGA
Found at i:62355413 original size:14 final size:14
Alignment explanation
Indices: 62355385--62355417 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
62355375 CCATGTAAGG
*
62355385 CACAC-GGCTTGTT
1 CACACGGGCATGTT
62355398 CACACGGGCATGTT
1 CACACGGGCATGTT
62355412 CACACG
1 CACACG
62355418 AGCGTGTTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.21, C:0.33, G:0.24, T:0.21
Consensus pattern (14 bp):
CACACGGGCATGTT
Found at i:62361700 original size:51 final size:51
Alignment explanation
Indices: 62361560--62361780 Score: 194
Period size: 51 Copynumber: 4.4 Consensus size: 51
62361550 CAAATGCCCG
* * * * * * *
62361560 GTGGCCTACACTTAGTACCACCCTTGT-AGTCAAAGCTACCTTTTTCACAAA
1 GTGGCCTACACTTAGTACCACACATGTGA-CCAAAGCTATCTTGTACACATA
* * * *
62361611 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTTACACATA
1 GTGGCCTACACTTAGTACCACACATGTGACCAAAGCTATCTTGTACACATA
* * ** *
62361662 GTGGCCTACACTTAGTACCACACATGTGATCGAAGCTATCGGGTACGCATA
1 GTGGCCTACACTTAGTACCACACATGTGACCAAAGCTATCTTGTACACATA
* * * * * * *
62361713 ATGGCCTGCACTTAGTACTACACATGCGACCTAA-CCATCTAGTACACATA
1 GTGGCCTACACTTAGTACCACACATGTGACCAAAGCTATCTTGTACACATA
* *
62361763 GTAGCCTGCACTTAGTAC
1 GTGGCCTACACTTAGTAC
62361781 TAAACACGTG
Statistics
Matches: 141, Mismatches: 28, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
50 28 0.20
51 112 0.79
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (51 bp):
GTGGCCTACACTTAGTACCACACATGTGACCAAAGCTATCTTGTACACATA
Found at i:62364024 original size:42 final size:42
Alignment explanation
Indices: 62363962--62364077 Score: 178
Period size: 42 Copynumber: 2.8 Consensus size: 42
62363952 AATATTTGAT
* **
62363962 ATAGCTTCGGCTATGTATTGGCACTTAGTGTGCGAGATCGGG
1 ATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATCAAG
*
62364004 ATAGCTTCGGTTATGCATTGGCACTTAGTGTGCGAGATCAAG
1 ATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATCAAG
* *
62364046 ATAGCTTCGGCAACGCATTGGCACTTAGTGTG
1 ATAGCTTCGGCTATGCATTGGCACTTAGTGTG
62364078 TAAGATTCCC
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (42 bp):
ATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATCAAG
Found at i:62364185 original size:32 final size:32
Alignment explanation
Indices: 62364149--62364215 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
62364139 TGAGTGTGAG
*
62364149 ATTGGTACGAGATGGTATAGGTATGTACGAAA
1 ATTGGTACGAGATGGTACAGGTATGTACGAAA
62364181 ATTGGTACGAGATGGTACAGGTATGTACGAAA
1 ATTGGTACGAGATGGTACAGGTATGTACGAAA
62364213 ATT
1 ATT
62364216 CAATTGAGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.28
Consensus pattern (32 bp):
ATTGGTACGAGATGGTACAGGTATGTACGAAA
Found at i:62366290 original size:37 final size:36
Alignment explanation
Indices: 62366232--62366361 Score: 188
Period size: 37 Copynumber: 3.5 Consensus size: 36
62366222 GGCAATACAT
*
62366232 GTGAGTACGTGTAAGACCATAGCTGGGCTATGGCATA
1 GTGA-TACATGTAAGACCATAGCTGGGCTATGGCATA
* *
62366269 GTAATAACATGTAAGACCATAGCTGGGCTATGGCATC
1 GTGAT-ACATGTAAGACCATAGCTGGGCTATGGCATA
*
62366306 GTGATGACATGTAAGACCATAGCTGGGCTATGGCATT
1 GTGAT-ACATGTAAGACCATAGCTGGGCTATGGCATA
*
62366343 GTGATACGTGTAAGACCAT
1 GTGATACATGTAAGACCAT
62366362 GTCTGGGATA
Statistics
Matches: 85, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
36 14 0.16
37 71 0.84
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (36 bp):
GTGATACATGTAAGACCATAGCTGGGCTATGGCATA
Found at i:62366329 original size:74 final size:73
Alignment explanation
Indices: 62366241--62366379 Score: 208
Period size: 74 Copynumber: 1.9 Consensus size: 73
62366231 TGTGAGTACG
* *
62366241 TGTAAGACCATAGCTGGGCTATGGCATAGTAATAACATGTAAGACCATAG-CTGGGCTATGGCAT
1 TGTAAGACCATAGCTGGGCTATGGCATAGTAAT-ACATGTAAGACCAT-GTCTGGGATAGGGCAT
62366305 CGTGATGACA
64 CGTGATGACA
* * *
62366315 TGTAAGACCATAGCTGGGCTATGGCATTGTGATACGTGTAAGACCATGTCTGGGATAGGGCATCG
1 TGTAAGACCATAGCTGGGCTATGGCATAGTAATACATGTAAGACCATGTCTGGGATAGGGCATCG
62366380 ATATGAGATC
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
72 1 0.02
73 27 0.46
74 31 0.53
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (73 bp):
TGTAAGACCATAGCTGGGCTATGGCATAGTAATACATGTAAGACCATGTCTGGGATAGGGCATCG
TGATGACA
Found at i:62366396 original size:42 final size:42
Alignment explanation
Indices: 62366349--62366525 Score: 158
Period size: 42 Copynumber: 4.2 Consensus size: 42
62366339 CATTGTGATA
**
62366349 CGTGTAAGACCATGTCTGGGATAGGGCATCGATATGAGATCC
1 CGTGTAAGACCATGTCTGGGATAGGGCATCGATATGAGATTT
* * *** * *
62366391 CGTGTAAGACTATATCTGGGATATTACTTCGGTATGAGATTT
1 CGTGTAAGACCATGTCTGGGATAGGGCATCGATATGAGATTT
* * * *
62366433 CGTGTAACACCGTGTTTGGGAT-GCGGCATCGATATGTGATTT
1 CGTGTAAGACCATGTCTGGGATAG-GGCATCGATATGAGATTT
* * * * * * *
62366475 CGTATAAGACCATGTTTGGGACATGGCATTGATGTGAGACTT
1 CGTGTAAGACCATGTCTGGGATAGGGCATCGATATGAGATTT
62366517 CGTGTAAGA
1 CGTGTAAGA
62366526 TCATAGTTGG
Statistics
Matches: 103, Mismatches: 30, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
42 103 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGATAGGGCATCGATATGAGATTT
Found at i:62373389 original size:40 final size:40
Alignment explanation
Indices: 62373331--62373498 Score: 232
Period size: 40 Copynumber: 4.2 Consensus size: 40
62373321 TCATCGGGAT
*
62373331 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
62373370 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * *
62373410 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * *
62373450 ATAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
62373490 TTAGTCCGG
1 TTAGCCCGG
62373499 TTATCATCCG
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 6 0.05
40 104 0.93
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:62381341 original size:40 final size:40
Alignment explanation
Indices: 62381289--62381436 Score: 183
Period size: 40 Copynumber: 3.7 Consensus size: 40
62381279 GGATTTAGCG
*
62381289 GGATATAACAACTCACACAAATGCCTTCGGGTCTTAGCCC
1 GGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCCC
* *
62381329 GGATATAGCAACTCGCACAAATGCCTTCGAGTCTTAGCCC
1 GGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCCC
* * * *
62381369 GGATATAATC-ACT-AGCATAAATGCCTTCGGGACATAGCCC
1 GGATAT-AGCAACTCA-CACAAATGCCTTCGGGTCTTAGCCC
* *
62381409 GGATATAGCAACTCGCACGAATGCCTTC
1 GGATATAGCAACTCACACAAATGCCTTC
62381437 AAATCTTAGT
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 2 0.02
40 87 0.96
41 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (40 bp):
GGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCCC
Found at i:62390540 original size:42 final size:42
Alignment explanation
Indices: 62390481--62390647 Score: 244
Period size: 42 Copynumber: 4.0 Consensus size: 42
62390471 GAAAATATTT
* * *
62390481 GAGATAGCTTTGGCTATGCATTAGCACTTACTGTGCGAGATC
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
*
62390523 GAGATAGCTTCGGCTATGCATTGGCATTTAGTGTGCGAGATC
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
* * *
62390565 AAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGTGATT
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
* * *
62390607 GAGTTAGCTTCGGCTACGCATTGGCATTTAGTGTGCGAGAT
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGAT
62390648 TCCCGAGTAA
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 112 1.00
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (42 bp):
GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
Found at i:62390628 original size:84 final size:84
Alignment explanation
Indices: 62390482--62390647 Score: 269
Period size: 84 Copynumber: 2.0 Consensus size: 84
62390472 AAAATATTTG
* *
62390482 AGATAGCTTTGGCTATGCATTAGCACTTACTGTGCGAGATCGAGATAGCTTCGGCTATGCATTGG
1 AGATAGCTTCGGCTATGCATTAGCACTTACTGTGCGAGATCGAGATAGCTTCGGCTACGCATTGG
62390547 CATTTAGTGTGCGAGATCA
66 CATTTAGTGTGCGAGATCA
* * * * *
62390566 AGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGTGATTGAGTTAGCTTCGGCTACGCATTGG
1 AGATAGCTTCGGCTATGCATTAGCACTTACTGTGCGAGATCGAGATAGCTTCGGCTACGCATTGG
62390631 CATTTAGTGTGCGAGAT
66 CATTTAGTGTGCGAGAT
62390648 TCCCGAGTAA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 75 1.00
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (84 bp):
AGATAGCTTCGGCTATGCATTAGCACTTACTGTGCGAGATCGAGATAGCTTCGGCTACGCATTGG
CATTTAGTGTGCGAGATCA
Found at i:62393355 original size:18 final size:18
Alignment explanation
Indices: 62393329--62393364 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
62393319 TCAAAGACAA
*
62393329 GGATTATCCTGATAGGGC
1 GGATGATCCTGATAGGGC
62393347 GGATGATCCTGATAGGGC
1 GGATGATCCTGATAGGGC
62393365 TTTGAGGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.17, G:0.36, T:0.25
Consensus pattern (18 bp):
GGATGATCCTGATAGGGC
Found at i:62393974 original size:15 final size:15
Alignment explanation
Indices: 62393954--62394022 Score: 59
Period size: 15 Copynumber: 4.6 Consensus size: 15
62393944 TCAAGATAAG
* *
62393954 GAAATCCATAATGGA
1 GAAATCCAAAATAGA
*
62393969 GAAATCCAAAATATA
1 GAAATCCAAAATAGA
* * *
62393984 GAAATCCAACAGAAA
1 GAAATCCAAAATAGA
*
62393999 GAAATCCAAAACA-A
1 GAAATCCAAAATAGA
62394013 GAAAATCCAA
1 G-AAATCCAA
62394023 TCAGACTGAC
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
14 2 0.04
15 43 0.96
ACGTcount: A:0.58, C:0.17, G:0.12, T:0.13
Consensus pattern (15 bp):
GAAATCCAAAATAGA
Found at i:62394002 original size:30 final size:31
Alignment explanation
Indices: 62393968--62394027 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
62393958 TCCATAATGG
*
62393968 AGAAATCCAAAATATAG-AAATCCAA-CAGAA
1 AGAAATCCAAAACA-AGAAAATCCAATCAGAA
62393998 AGAAATCCAAAACAAGAAAATCCAATCAGA
1 AGAAATCCAAAACAAGAAAATCCAATCAGA
62394028 CTGACAATGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 2 0.07
30 21 0.78
31 4 0.15
ACGTcount: A:0.60, C:0.18, G:0.10, T:0.12
Consensus pattern (31 bp):
AGAAATCCAAAACAAGAAAATCCAATCAGAA
Found at i:62398569 original size:40 final size:40
Alignment explanation
Indices: 62398492--62398669 Score: 297
Period size: 40 Copynumber: 4.5 Consensus size: 40
62398482 AAACCAAGTA
* * *
62398492 CCTTCGGGATTTAG-CCAGATATAGCTAA-TCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
62398531 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62398571 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62398611 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62398651 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
62398670 TTATCATCCG
Statistics
Matches: 132, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 16 0.12
40 116 0.88
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:62400640 original size:51 final size:52
Alignment explanation
Indices: 62400559--62400678 Score: 140
Period size: 51 Copynumber: 2.3 Consensus size: 52
62400549 TGCCTGGTGG
*
62400559 CCTGCACATAGTACCAC-CTTTGTAGTCAAAGCTACCTTCTT-CACAAAGTGC
1 CCTGCACATAGTACCACACTTTGTAGACAAAGCTACCTT-TTACACAAAGTGC
* * * *
62400610 CCTTCACATAGTACCACACTCTTG-A-ACAAAGCTATCTTTTACACATAGTGG
1 CCTGCACATAGTACCACACT-TTGTAGACAAAGCTACCTTTTACACAAAGTGC
*
62400661 CCTGCACTTAGTACCACA
1 CCTGCACATAGTACCACA
62400679 AACGTGATCG
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
50 2 0.03
51 51 0.86
52 3 0.05
53 3 0.05
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.28
Consensus pattern (52 bp):
CCTGCACATAGTACCACACTTTGTAGACAAAGCTACCTTTTACACAAAGTGC
Found at i:62408179 original size:30 final size:30
Alignment explanation
Indices: 62408145--62408204 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
62408135 ATTTAATACG
62408145 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
62408175 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
62408205 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:62416574 original size:40 final size:40
Alignment explanation
Indices: 62416530--62416796 Score: 450
Period size: 40 Copynumber: 6.7 Consensus size: 40
62416520 GCTACTTGCT
62416530 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
62416570 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
62416610 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
62416650 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
62416690 CAAATACCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
62416730 CAAATGCCTTCGGG-CTTAGCCTGG-AATTAGTCAC-AGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
62416768 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
62416797 CATCCGAATA
Statistics
Matches: 215, Mismatches: 9, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
38 18 0.08
39 25 0.12
40 172 0.80
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:62422633 original size:27 final size:27
Alignment explanation
Indices: 62422585--62422644 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
62422575 TATGTCGATC
* * * *
62422585 ATTTTATACTACAAGGGCATTTTAGTA
1 ATTTTACACTACAAGAGCATTTCAATA
**
62422612 ATTTTACACTACAAGATTATTTCAATA
1 ATTTTACACTACAAGAGCATTTCAATA
62422639 ATTTTA
1 ATTTTA
62422645 TAAATAAGGG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.43
Consensus pattern (27 bp):
ATTTTACACTACAAGAGCATTTCAATA
Found at i:62422661 original size:27 final size:27
Alignment explanation
Indices: 62422631--62423045 Score: 364
Period size: 27 Copynumber: 15.4 Consensus size: 27
62422621 TACAAGATTA
* *
62422631 TTTCAATAATTTTATAAATA-AGGGGTG
1 TTTCAGTAATTTTACAAATAGA-GGGTG
*
62422658 TTTCAGTAATTTTACAAATTGAGGGTG
1 TTTCAGTAATTTTACAAATAGAGGGTG
* *
62422685 TTTCGGTAATTTTACAAATCGAGGGTG
1 TTTCAGTAATTTTACAAATAGAGGGTG
* * *
62422712 TTTCGGTAATTTTACAAGTCGAGGGTG
1 TTTCAGTAATTTTACAAATAGAGGGTG
*
62422739 TTTCAGTAATTTTACAAATCA-AAGGTG
1 TTTCAGTAATTTTACAAAT-AGAGGGTG
* *
62422766 TTTCGGTAATTTTACAAATCGAGGGTG
1 TTTCAGTAATTTTACAAATAGAGGGTG
* * * * *
62422793 TTTCTGTAATTTCACAAATCGAGTGTA
1 TTTCAGTAATTTTACAAATAGAGGGTG
** * *
62422820 TTTTGGTAA-TTTCCAAATCGAGGGTG
1 TTTCAGTAATTTTACAAATAGAGGGTG
* * *
62422846 TTTC-GATAATTTTACAATTTGAGGGTA
1 TTTCAG-TAATTTTACAAATAGAGGGTG
* *
62422873 TTTCAGTAATTTTACAATTTGAGGGTG
1 TTTCAGTAATTTTACAAATAGAGGGTG
*
62422900 TTTCGGTAATTTTACAAATCA-AGGGTG
1 TTTCAGTAATTTTACAAAT-AGAGGGTG
* * *
62422927 TTT-TGATAATTTTACAAATCGAAGGTG
1 TTTCAG-TAATTTTACAAATAGAGGGTG
* * *
62422954 TTTC-GATAATTTCACAAATCGAGGGTA
1 TTTCAG-TAATTTTACAAATAGAGGGTG
* *
62422981 TTTTAGTAATTTCAC-AATCA-AGGGTG
1 TTTCAGTAATTTTACAAAT-AGAGGGTG
*
62423007 TTTC-GATAATTTTACAAATTGAGGGTG
1 TTTCAG-TAATTTTACAAATAGAGGGTG
*
62423034 TTTCGGTAATTT
1 TTTCAGTAATTT
62423046 CTCTTTATTA
Statistics
Matches: 328, Mismatches: 44, Indels: 32
0.81 0.11 0.08
Matches are distributed among these distances:
25 2 0.01
26 39 0.12
27 283 0.86
28 4 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
TTTCAGTAATTTTACAAATAGAGGGTG
Found at i:62422695 original size:54 final size:54
Alignment explanation
Indices: 62422637--62423045 Score: 450
Period size: 54 Copynumber: 7.6 Consensus size: 54
62422627 ATTATTTCAA
* * *
62422637 TAATTTTATAAATA-AGGGGTGTTTCAGTAATTTTACAAATTGAGGGTGTTTCGG
1 TAATTTTACAAATAGA-GGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
* * *
62422691 TAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAGTCGAGGGTGTTTCAG
1 TAATTTTACAAATAGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
* *
62422745 TAATTTTACAAATCA-AAGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCTG
1 TAATTTTACAAAT-AGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
* * * * * * *
62422799 TAATTTCACAAATCGAGTGTATTTTGGTAA-TTTCCAAATCGAGGGTGTTTCGA
1 TAATTTTACAAATAGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
* * * * * *
62422852 TAATTTTACAATTTGAGGGTATTTCAGTAATTTTACAATTTGAGGGTGTTTCGG
1 TAATTTTACAAATAGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
* * * *
62422906 TAATTTTACAAATCA-AGGGTGTTTTGATAATTTTACAAATCGAAGGTGTTTCGA
1 TAATTTTACAAAT-AGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
* * * ** * * *
62422960 TAATTTCACAAATCGAGGGTATTTTAGTAATTTCAC-AATCAAGGGTGTTTCGA
1 TAATTTTACAAATAGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
*
62423013 TAATTTTACAAATTGAGGGTGTTTCGGTAATTT
1 TAATTTTACAAATAGAGGGTGTTTCGGTAATTT
62423046 CTCTTTATTA
Statistics
Matches: 297, Mismatches: 52, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
53 87 0.29
54 209 0.70
55 1 0.00
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.40
Consensus pattern (54 bp):
TAATTTTACAAATAGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
Found at i:62422884 original size:161 final size:160
Alignment explanation
Indices: 62422653--62423045 Score: 572
Period size: 161 Copynumber: 2.4 Consensus size: 160
62422643 TATAAATAAG
* * * * *
62422653 GGGTGTTTCAGTAATTTTACAAATTGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
1 GGGTATTTTAGTAA-TTT-CAAATCGAGGGTGTTTCGATAATTTTACAAATTGAGGGTGTTTCGG
*
62422718 TAATTTTACAAGTCGAGGGTGTTTCAGTAATTTTACAAATCAAAGGTGTTTCGGTAATTTTACAA
64 TAATTTTACAAGTCGAGGGTGTTTCAGTAATTTTACAAATCAAAGGTGTTTCGATAATTTTACAA
*
62422783 ATCGAGGGTGTTTCTG-TAATTTCACAAATCGA
129 ATCGAAGGTGTTTC-GATAATTTCACAAATCGA
* * * * *
62422815 GTGTATTTTGGTAATTTCCAAATCGAGGGTGTTTCGATAATTTTACAATTTGAGGGTATTTCAGT
1 GGGTATTTTAGTAATTT-CAAATCGAGGGTGTTTCGATAATTTTACAAATTGAGGGTGTTTCGGT
* * * * *
62422880 AATTTTACAATTTGAGGGTGTTTCGGTAATTTTACAAATCAAGGGTGTTTTGATAATTTTACAAA
65 AATTTTACAAGTCGAGGGTGTTTCAGTAATTTTACAAATCAAAGGTGTTTCGATAATTTTACAAA
62422945 TCGAAGGTGTTTCGATAATTTCACAAATCGA
130 TCGAAGGTGTTTCGATAATTTCACAAATCGA
*
62422976 GGGTATTTTAGTAATTTCACAATCAAGGGTGTTTCGATAATTTTACAAATTGAGGGTGTTTCGGT
1 GGGTATTTTAGTAATTTCA-AATCGAGGGTGTTTCGATAATTTTACAAATTGAGGGTGTTTCGGT
62423041 AATTT
65 AATTT
62423046 CTCTTTATTA
Statistics
Matches: 205, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
160 3 0.01
161 192 0.94
162 10 0.05
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.39
Consensus pattern (160 bp):
GGGTATTTTAGTAATTTCAAATCGAGGGTGTTTCGATAATTTTACAAATTGAGGGTGTTTCGGTA
ATTTTACAAGTCGAGGGTGTTTCAGTAATTTTACAAATCAAAGGTGTTTCGATAATTTTACAAAT
CGAAGGTGTTTCGATAATTTCACAAATCGA
Found at i:62429632 original size:19 final size:19
Alignment explanation
Indices: 62429608--62429644 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
62429598 CTTAACCACT
62429608 GAAGCAAGCATGCATTTAG
1 GAAGCAAGCATGCATTTAG
62429627 GAAGCAAGCATGCATTTA
1 GAAGCAAGCATGCATTTA
62429645 TGCAACACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (19 bp):
GAAGCAAGCATGCATTTAG
Found at i:62439934 original size:22 final size:21
Alignment explanation
Indices: 62439909--62439953 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
62439899 TTCCCCGTAT
*
62439909 TTCATAGTGGCTCCCTCTTGCA
1 TTCATA-TGGCTCACTCTTGCA
* *
62439931 TTCATATTGCTCAGTCTTGCA
1 TTCATATGGCTCACTCTTGCA
62439952 TT
1 TT
62439954 TTGAAATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.16, C:0.27, G:0.16, T:0.42
Consensus pattern (21 bp):
TTCATATGGCTCACTCTTGCA
Found at i:62443416 original size:48 final size:48
Alignment explanation
Indices: 62442521--62443413 Score: 1437
Period size: 48 Copynumber: 18.6 Consensus size: 48
62442511 AGATAAATAT
62442521 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
62442569 ATATGTATATGCGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
62442617 ATATGTATATGAGGTAAAGTCGAATGACTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
62442665 ATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
62442713 ATATGTATATATGGTAAATCCGAATGGCTAGTGTGAACTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
62442761 ATATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
62442809 ATATGAATACGTGGTAAAGCCGAATGGCTAATGTG-AATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
62442856 ATATGAATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
62442904 ATATGTATAGGCGGTAAAACCGAATGGCTAATGGGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
62442952 ATATGTATATGCGGTAAAGTCGAATGACTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
62443000 ATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
62443048 ATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
62443096 ATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
62443144 ATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
62443192 ATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
62443240 ATATGTCTATGCGGTAAAGCCGAATGGCTAATGTGAATTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
62443288 ATATGTATATGTGGTAAAACCGAATGGCTAGTGTGAATTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
62443336 ATATGTATACGTGGTAAAGCCTAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
62443384 ATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
62443414 GTGATTCGGC
Statistics
Matches: 797, Mismatches: 47, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
47 47 0.06
48 750 0.94
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:62443636 original size:37 final size:37
Alignment explanation
Indices: 62443586--62443688 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
62443576 GGAAATATAT
62443586 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
62443623 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
62443660 TCCGGGTAAGACCTGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
62443689 GGACTATTCA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Done.