Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 191 of 352
Found at i:62749849 original size:19 final size:19
Alignment explanation
Indices: 62749774--62749850 Score: 84
Period size: 19 Copynumber: 4.1 Consensus size: 19
62749764 TCATGTAAAT
*
62749774 AGTAATTCATTTG-ATAAC
1 AGTAATTCATTCGTATAAC
*
62749792 AGTAACTCATTCGTATAAAC
1 AGTAATTCATTCGTAT-AAC
* * *
62749812 AGTACTTCATCCATATAAC
1 AGTAATTCATTCGTATAAC
*
62749831 AGTAATTCATTCGTGTAAC
1 AGTAATTCATTCGTATAAC
62749850 A
1 A
62749851 CATAGCTTTT
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
18 11 0.23
19 21 0.45
20 15 0.32
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (19 bp):
AGTAATTCATTCGTATAAC
Found at i:62754691 original size:3 final size:3
Alignment explanation
Indices: 62754683--62754714 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
62754673 TTCCAGTTTA
62754683 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
62754715 AATATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:62765036 original size:13 final size:13
Alignment explanation
Indices: 62765014--62765043 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
62765004 TCATTCAAGT
62765014 TTCA-CATCTCAA
1 TTCATCATCTCAA
62765026 TTCATCATCTCAA
1 TTCATCATCTCAA
62765039 TTCAT
1 TTCAT
62765044 TCAAGTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.40
Consensus pattern (13 bp):
TTCATCATCTCAA
Found at i:62766631 original size:40 final size:40
Alignment explanation
Indices: 62766551--62766808 Score: 362
Period size: 40 Copynumber: 6.5 Consensus size: 40
62766541 AAACCAAGTA
* * * *
62766551 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCTCTCAGATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
62766590 CCTTCGGGACTTAGCCCGGATCTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62766630 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62766670 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62766710 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
62766750 CCTTCGAGG-CTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCG-GGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
62766790 CCTTCGGTACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
62766809 TTATCATCCG
Statistics
Matches: 199, Mismatches: 14, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
39 18 0.09
40 179 0.90
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:62774709 original size:39 final size:40
Alignment explanation
Indices: 62774655--62774868 Score: 300
Period size: 39 Copynumber: 5.5 Consensus size: 40
62774645 AAACCAAGTA
* *
62774655 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
62774694 CCTTCGGGACTTAGCCCGG-TATAGTAACTCACAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
62774732 CCTTCGGGACTTAGCCCGGATATAGTAACT-GCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
62774771 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
62774811 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACAAATG
62774850 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
62774869 TTATCATCCG
Statistics
Matches: 162, Mismatches: 5, Indels: 15
0.89 0.03 0.08
Matches are distributed among these distances:
38 28 0.17
39 103 0.64
40 31 0.19
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:62784893 original size:27 final size:27
Alignment explanation
Indices: 62784863--62785040 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62784853 ATATTGAGTC
* * * *
62784863 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
62784890 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62784917 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
62784945 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
62784972 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
62784999 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62785026 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62785041 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:62785002 original size:82 final size:81
Alignment explanation
Indices: 62784884--62785039 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62784874 TGCTATATAA
* *
62784884 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62784949 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
62784966 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62785030 CACTTAGTGC
65 CACTTAGTGC
62785040 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62791820 original size:40 final size:40
Alignment explanation
Indices: 62791737--62791994 Score: 360
Period size: 40 Copynumber: 6.5 Consensus size: 40
62791727 AAACCAAGTA
* * *
62791737 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAGATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
62791776 CCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62791816 CCTTCGGGACTTAGCCCGGGTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62791856 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62791896 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
62791936 CCTTAGGGGCTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
62791976 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
62791995 TTATCATCCG
Statistics
Matches: 196, Mismatches: 19, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
39 17 0.09
40 178 0.91
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:62806436 original size:54 final size:54
Alignment explanation
Indices: 62806343--62806448 Score: 149
Period size: 54 Copynumber: 2.0 Consensus size: 54
62806333 AATTTCTTAG
* * *
62806343 ATTTCGATCATTCCCCAAGCCATATATCTCTATATTATTTAAAGAAAAACATAT
1 ATTTCGATCATTCCCCAAGCCATAAATCTCCATAGTATTTAAAGAAAAACATAT
* * * *
62806397 ATTTTGATCATTCTCCAAGCCATAAATCTCCATAGTATTTCAGGAAAAACAT
1 ATTTCGATCATTCCCCAAGCCATAAATCTCCATAGTATTTAAAGAAAAACAT
62806449 CCAAGAACAC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.34
Consensus pattern (54 bp):
ATTTCGATCATTCCCCAAGCCATAAATCTCCATAGTATTTAAAGAAAAACATAT
Found at i:62807659 original size:20 final size:20
Alignment explanation
Indices: 62807634--62807674 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
62807624 TCTCCTATGA
62807634 CTTCCAACCCGAGCAAGTCT
1 CTTCCAACCCGAGCAAGTCT
62807654 CTTCCAACCCGAGCAAGTCT
1 CTTCCAACCCGAGCAAGTCT
62807674 C
1 C
62807675 CGAAACTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.41, G:0.15, T:0.20
Consensus pattern (20 bp):
CTTCCAACCCGAGCAAGTCT
Found at i:62808261 original size:43 final size:43
Alignment explanation
Indices: 62808177--62808330 Score: 127
Period size: 44 Copynumber: 3.6 Consensus size: 43
62808167 CATACAATGT
* * *
62808177 CAATGTCCCAAAC-GTGTTCTTACATGTAATCAAATATCGATGC
1 CAATGTCCCAGACAG-GGTCTTACATGAAATCAAATATCGATGC
* * *
62808220 CACTGTCCCCAGACAGGGTCTTATATGAAATCATATA-CGATGC
1 CAATGT-CCCAGACAGGGTCTTACATGAAATCAAATATCGATGC
** * *
62808263 CAATGTCCCAGACATAGTCTTACAAGTAAATCTCAA-ATCGATGC
1 CAATGTCCCAGACAGGGTCTTACATG-AAATC-AAATATCGATGC
**
62808307 CAACATCCCAGAC-GTGGTCTTACA
1 CAATGTCCCAGACAG-GGTCTTACA
62808331 CGATAACACA
Statistics
Matches: 88, Mismatches: 17, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
42 16 0.18
43 22 0.25
44 49 0.56
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
CAATGTCCCAGACAGGGTCTTACATGAAATCAAATATCGATGC
Found at i:62810198 original size:34 final size:33
Alignment explanation
Indices: 62810155--62810221 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 33
62810145 CATGTCAATA
* *
62810155 ACAGTTCAGTTTCAGT-TAGGGCCTTAGCCCATT
1 ACAGTTCAGTATCAATGT-GGGCCTTAGCCCATT
62810188 ACAGTATCAGTATCAATGTGGGCCTTAGCCCATT
1 ACAGT-TCAGTATCAATGTGGGCCTTAGCCCATT
62810222 TTAGTGTCGG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
33 5 0.17
34 24 0.80
35 1 0.03
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (33 bp):
ACAGTTCAGTATCAATGTGGGCCTTAGCCCATT
Found at i:62819871 original size:20 final size:20
Alignment explanation
Indices: 62819848--62819887 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
62819838 ATTTTCAATT
62819848 TAAAATTATTACATTCAGGA
1 TAAAATTATTACATTCAGGA
* * *
62819868 TAAATTTGTTACCTTCAGGA
1 TAAAATTATTACATTCAGGA
62819888 GTTTCTGAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (20 bp):
TAAAATTATTACATTCAGGA
Found at i:62820205 original size:15 final size:15
Alignment explanation
Indices: 62820181--62820210 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
62820171 AGCCAATTGA
62820181 AAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAG
62820196 AAAAAGAAAAAAAAA
1 AAAAA-AAAAAAAAA
62820211 AGACCATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAG
Found at i:62820205 original size:17 final size:16
Alignment explanation
Indices: 62820179--62820213 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
62820169 AAAGCCAATT
62820179 GAAAAAAAAAAAAAAA
1 GAAAAAAAAAAAAAAA
62820195 GAAAAAGAAAAAAAAAA
1 GAAAAA-AAAAAAAAAA
62820212 GA
1 GA
62820214 CCATCATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (16 bp):
GAAAAAAAAAAAAAAA
Found at i:62822229 original size:18 final size:19
Alignment explanation
Indices: 62822195--62822233 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
62822185 ATTCGAAAAA
*
62822195 AATTCGACTTGACTCAAAT
1 AATTCGACTTAACTCAAAT
62822214 AATTCGA-TTAACTCAAAT
1 AATTCGACTTAACTCAAAT
62822232 AA
1 AA
62822234 CTCAATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.31
Consensus pattern (19 bp):
AATTCGACTTAACTCAAAT
Found at i:62822614 original size:11 final size:11
Alignment explanation
Indices: 62822597--62822680 Score: 87
Period size: 11 Copynumber: 7.6 Consensus size: 11
62822587 TCCCACCTTT
62822597 TCAATTCACTC
1 TCAATTCACTC
*
62822608 ACAATTCACTC
1 TCAATTCACTC
* *
62822619 TCAACTCTCTC
1 TCAATTCACTC
*
62822630 TCAATTCATTC
1 TCAATTCACTC
* *
62822641 TCAATCCTCTC
1 TCAATTCACTC
*
62822652 TCAATTCATTC
1 TCAATTCACTC
* *
62822663 TCAATCCTCTC
1 TCAATTCACTC
62822674 TCAATTC
1 TCAATTC
62822681 TTTGTCATTT
Statistics
Matches: 56, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
11 56 1.00
ACGTcount: A:0.25, C:0.37, G:0.00, T:0.38
Consensus pattern (11 bp):
TCAATTCACTC
Found at i:62822634 original size:22 final size:22
Alignment explanation
Indices: 62822609--62822680 Score: 119
Period size: 22 Copynumber: 3.3 Consensus size: 22
62822599 AATTCACTCA
*
62822609 CAATTCACTCTCAA-CTCTCTCT
1 CAATTCATTCTCAATC-CTCTCT
62822631 CAATTCATTCTCAATCCTCTCT
1 CAATTCATTCTCAATCCTCTCT
62822653 CAATTCATTCTCAATCCTCTCT
1 CAATTCATTCTCAATCCTCTCT
62822675 CAATTC
1 CAATTC
62822681 TTTGTCATTT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
22 47 0.98
23 1 0.02
ACGTcount: A:0.24, C:0.38, G:0.00, T:0.39
Consensus pattern (22 bp):
CAATTCATTCTCAATCCTCTCT
Found at i:62822716 original size:24 final size:23
Alignment explanation
Indices: 62822689--62822744 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 23
62822679 TCTTTGTCAT
*
62822689 TTTTTTATTAAAATTGTATTAAGG
1 TTTTTTATTAAAATTGTATT-ACG
* **
62822713 TTTTTAATTAATTTTGTATTACG
1 TTTTTTATTAAAATTGTATTACG
62822736 TTTTTTATT
1 TTTTTTATT
62822745 CTATTTATTG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 10 0.37
24 17 0.63
ACGTcount: A:0.27, C:0.02, G:0.09, T:0.62
Consensus pattern (23 bp):
TTTTTTATTAAAATTGTATTACG
Found at i:62826461 original size:43 final size:43
Alignment explanation
Indices: 62826384--62826520 Score: 118
Period size: 43 Copynumber: 3.2 Consensus size: 43
62826374 CATACAATGA
* * * * * * *
62826384 GTCTTACATGTAATCACATGTTGATTCCATTGTCCTAGATAGG
1 GTCTTACACGAAATCACATATCGATGCCAATGTCCTAGACAGG
* * *
62826427 GTCTTACACG-AATCACAATTAT-GATGCCGATGTCCCAGACATG
1 GTCTTACACGAAATCAC-A-TATCGATGCCAATGTCCTAGACAGG
* *
62826470 GTCTTACTCGAAATCACATATCGATGCCAACGTCCTAGAC-GTG
1 GTCTTACACGAAATCACATATCGATGCCAATGTCCTAGACAG-G
62826513 GTCTTACA
1 GTCTTACA
62826521 TGTGAACATA
Statistics
Matches: 75, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
42 9 0.12
43 58 0.77
44 8 0.11
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (43 bp):
GTCTTACACGAAATCACATATCGATGCCAATGTCCTAGACAGG
Found at i:62827720 original size:26 final size:26
Alignment explanation
Indices: 62827690--62827741 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
62827680 TAATAAACAC
62827690 TGAAAATAATTTTTAAATATTTTTCT
1 TGAAAATAATTTTTAAATATTTTTCT
62827716 TGAAAATAATTTTTAAATATTTTTCT
1 TGAAAATAATTTTTAAATATTTTTCT
62827742 AACTTGGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (26 bp):
TGAAAATAATTTTTAAATATTTTTCT
Found at i:62853857 original size:80 final size:80
Alignment explanation
Indices: 62853724--62853951 Score: 357
Period size: 80 Copynumber: 2.9 Consensus size: 80
62853714 TATTCGGATG
*
62853724 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCGCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCA
*
62853789 TTTATGCTAGCGATT
66 TTTATGCTAGCAATT
*
62853804 ATAACCGGACTAAGATCCGAAGGCATTCGTGTGAGTTGCTATATCCGGGCTATGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCA
62853869 TTTATGCTAGCAATT
66 TTTATGCTAGCAATT
* * * * * * * *
62853884 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTAAATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCA
62853949 TTT
66 TTT
62853952 GTGCGAGTTG
Statistics
Matches: 136, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
80 136 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCA
TTTATGCTAGCAATT
Found at i:62853952 original size:40 final size:40
Alignment explanation
Indices: 62853728--62853961 Score: 208
Period size: 40 Copynumber: 5.8 Consensus size: 40
62853718 CGGATGATAA
* * * *
62853728 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTAAAT
* * * * * * *
62853768 CCGGGCTATGTCGCGAAGGCATTTATGCTAG-CGATTATAA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA-AAT
* * * * *
62853808 CCGGACTAAGATCCGAAGGCATTCGTGTGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTAAAT
* * * *
62853848 CCGGGCTATGTCCCGAAGGCATTTATGCTAGCAATT-CT--AT
1 CCGGGCTAAGACCCGAAGGCATTTGTGC--G-AGTTGCTAAAT
62853888 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTAAAT
62853928 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
62853962 TTATATTCGG
Statistics
Matches: 149, Mismatches: 35, Indels: 20
0.73 0.17 0.10
Matches are distributed among these distances:
37 3 0.02
38 3 0.02
39 2 0.01
40 133 0.89
41 2 0.01
42 3 0.02
43 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTAAAT
Found at i:62861964 original size:77 final size:78
Alignment explanation
Indices: 62861787--62862011 Score: 353
Period size: 77 Copynumber: 2.8 Consensus size: 78
62861777 TATTCGGATG
*
62861787 ATAACCGGACTAAGATCCAAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGC-ATATCCGGGCTA-GTCCCGAAGGCA
62861852 TTTATGCTAGCGATT
64 TTTATGCTAGCGATT
62861867 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGC-TATCCGGGCTAGTCCCGAAGGCATT
1 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCATATCCGGGCTAGTCCCGAAGGCATT
62861931 TATGCTAGCGATT
66 TATGCTAGCGATT
* * * * *
62861944 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGC-ATATCCGGGCT-AGTCCCGAAGGCA
62862009 TTT
64 TTT
62862012 GTGCGAGTTG
Statistics
Matches: 136, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
77 62 0.46
78 11 0.08
79 10 0.07
80 53 0.39
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (78 bp):
ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCATATCCGGGCTAGTCCCGAAGGCATT
TATGCTAGCGATT
Found at i:62862012 original size:40 final size:40
Alignment explanation
Indices: 62861791--62862031 Score: 249
Period size: 40 Copynumber: 6.1 Consensus size: 40
62861781 CGGATGATAA
* * * *
62861791 CCGGACTAAGATCCAAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * * * *
62861831 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-CGATTATAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
* * *
62861871 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGC--TAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
62861909 CCGGGCT-AGTCCCGAAGGCATTTATGCTAG-CGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
62861948 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
62861988 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
62862028 CCGG
1 CCGG
62862032 TTAAATCCCG
Statistics
Matches: 159, Mismatches: 35, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
36 1 0.01
37 18 0.11
38 8 0.05
39 11 0.07
40 119 0.75
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:62864563 original size:41 final size:42
Alignment explanation
Indices: 62864492--62864598 Score: 110
Period size: 41 Copynumber: 2.5 Consensus size: 42
62864482 ATGCTATCTC
* * *
62864492 ATATCGATGCCATTGTCCAAGACAGAGTCTTACACA-AATCAA
1 ATAT-GATGCCAATGTCCCAGACAGAGTCTTACACATAACCAA
* * *
62864534 ATATGATGCCAATGTCCCAGGCATG-GTCTTACTCATAACCAC
1 ATATGATGCCAATGTCCCAGACA-GAGTCTTACACATAACCAA
*
62864576 ATACCGATGCCAATGTCCCAGAC
1 ATA-TGATGCCAATGTCCCAGAC
62864599 GTCGTCTTAC
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 25 0.46
42 12 0.22
43 17 0.31
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (42 bp):
ATATGATGCCAATGTCCCAGACAGAGTCTTACACATAACCAA
Found at i:62866461 original size:40 final size:41
Alignment explanation
Indices: 62866372--62866518 Score: 206
Period size: 41 Copynumber: 3.6 Consensus size: 41
62866362 CGCTGACTCA
* *
62866372 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
62866413 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
62866453 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTG
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
62866494 AAAAGCCCTTCGAGACCAAGCTCGG
1 AAAAGCCCTTCGAGACCAAGCTCGG
62866519 TTTTAAACCC
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
40 32 0.36
41 58 0.64
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:62866519 original size:81 final size:81
Alignment explanation
Indices: 62866372--62866520 Score: 219
Period size: 81 Copynumber: 1.8 Consensus size: 81
62866362 CGCTGACTCA
* * * * *
62866372 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCCGAAGGCCCTTCGAAACTAGGTTCG
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCGAAAGCCCTTCGAAACCAAGCTCG
62866437 GTTATGACACTGGCTC
66 GTTATGACACTGGCTC
* *
62866453 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGG-CTGAAAAGCCCTTCGAGACCAAGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCG-AAAGCCCTTCGAAACCAAGCTC
62866517 GGTT
65 GGTT
62866521 TTAAACCCCG
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 2 0.03
81 58 0.97
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (81 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCGAAAGCCCTTCGAAACCAAGCTCG
GTTATGACACTGGCTC
Found at i:62874676 original size:40 final size:41
Alignment explanation
Indices: 62874587--62874733 Score: 206
Period size: 41 Copynumber: 3.6 Consensus size: 41
62874577 CGCTGACTCA
* *
62874587 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
62874628 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
62874668 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGCCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
62874709 AAAAGCCCTTCGAGACCAAGCTCGG
1 AAAAGCCCTTCGAGACCAAGCTCGG
62874734 TTTTAAACCC
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
40 32 0.36
41 58 0.64
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:62874734 original size:81 final size:81
Alignment explanation
Indices: 62874587--62874735 Score: 219
Period size: 81 Copynumber: 1.8 Consensus size: 81
62874577 CGCTGACTCA
* * * * * *
62874587 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCCGAAGGCCCTTCGAAACTAGGTTCG
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAAAAGCCCTTCGAAACCAAGCTCG
62874652 GTTATGACACTGGCTC
66 GTTATGACACTGGCTC
*
62874668 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACT-GCCTCAAAAGCCCTTCGAGACCAAGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCC-CAAAAGCCCTTCGAAACCAAGCTC
62874732 GGTT
65 GGTT
62874736 TTAAACCCCG
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 3 0.05
81 57 0.95
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.21
Consensus pattern (81 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAAAAGCCCTTCGAAACCAAGCTCG
GTTATGACACTGGCTC
Found at i:62882249 original size:16 final size:16
Alignment explanation
Indices: 62882230--62882272 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
62882220 GCAAATCTCG
*
62882230 AAAAGCCGAAATGCCA
1 AAAAGTCGAAATGCCA
* *
62882246 AAAAGTTGAAATGTCA
1 AAAAGTCGAAATGCCA
62882262 AAAAGTCGAAA
1 AAAAGTCGAAA
62882273 GTTTGGCTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.53, C:0.14, G:0.19, T:0.14
Consensus pattern (16 bp):
AAAAGTCGAAATGCCA
Found at i:62882530 original size:29 final size:29
Alignment explanation
Indices: 62882488--62882600 Score: 158
Period size: 29 Copynumber: 3.9 Consensus size: 29
62882478 CATGACTATG
*
62882488 AATGTGATTTGGGCCAAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
*
62882517 AATGTAATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
*
62882546 AATGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATA
* *
62882575 AA--TGATATTGGGCCCAGTGGGCCATA
1 AATGTGAT-TTGGGCCTAATGGGCCATA
62882601 AGCATGTATA
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
27 4 0.05
28 17 0.22
29 56 0.73
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATA
Found at i:62885866 original size:25 final size:25
Alignment explanation
Indices: 62885819--62885868 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
62885809 GATAGCAAAT
* * *
62885819 AAGCATTTAAATTCATATAACATTA
1 AAGCATTAAAATACACATAACATTA
*
62885844 AAGCATTAAAATACACATCACATTA
1 AAGCATTAAAATACACATAACATTA
62885869 TTTACACATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.50, C:0.16, G:0.04, T:0.30
Consensus pattern (25 bp):
AAGCATTAAAATACACATAACATTA
Found at i:62887868 original size:16 final size:15
Alignment explanation
Indices: 62887827--62887868 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
62887817 GATGTATTAA
*
62887827 TAAAGGTTAAAATAG
1 TAAAGATTAAAATAG
62887842 TAAA-ATGTAAAATAAG
1 TAAAGAT-TAAAAT-AG
62887858 TAAAGATTAAA
1 TAAAGATTAAA
62887869 TAAAACAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 1 0.04
15 10 0.43
16 10 0.43
17 2 0.09
ACGTcount: A:0.60, C:0.00, G:0.14, T:0.26
Consensus pattern (15 bp):
TAAAGATTAAAATAG
Found at i:62890097 original size:43 final size:43
Alignment explanation
Indices: 62890049--62890211 Score: 154
Period size: 43 Copynumber: 3.8 Consensus size: 43
62890039 ATCGAGATGT
*
62890049 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
* *
62890092 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCATATT-A
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
* * * * * *
62890134 TAATTTCGTGTAAGACCTTGTCTGGGATAGTGGCATCG-ATATGTA
1 -GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TG-A
* * * *
62890179 -TTTACATTTAAGACCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT
62890212 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
42 9 0.09
43 91 0.90
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
Found at i:62905697 original size:25 final size:29
Alignment explanation
Indices: 62905643--62905707 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 29
62905633 TTATTTTCAC
62905643 TTTTATCTTTATTTATCTTCTTTAAGTACT-
1 TTTTAT-TTTATTTATC-TCTTTAAGTACTA
62905673 TTTTATTTTATTT-TC-CTTTAA-TACTA
1 TTTTATTTTATTTATCTCTTTAAGTACTA
*
62905699 TTTCATTTT
1 TTTTATTTT
62905708 TAGGTTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 4 0.12
26 14 0.42
28 2 0.06
29 7 0.21
30 6 0.18
ACGTcount: A:0.20, C:0.12, G:0.02, T:0.66
Consensus pattern (29 bp):
TTTTATTTTATTTATCTCTTTAAGTACTA
Found at i:62909588 original size:28 final size:27
Alignment explanation
Indices: 62909533--62909644 Score: 104
Period size: 27 Copynumber: 4.1 Consensus size: 27
62909523 AGCATGGCTG
* * *
62909533 CCAGA-ACAGATAATGCGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
* *
62909559 CCAAATACAGATAATCGTTGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
62909587 CCAGA-ACAGATATATGTGGCAAAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
* *
62909614 CCAGAT-CAGATAATTATGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
62909641 CCAG
1 CCAG
62909645 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
26 5 0.07
27 52 0.73
28 14 0.20
ACGTcount: A:0.39, C:0.24, G:0.21, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:62909640 original size:54 final size:54
Alignment explanation
Indices: 62909533--62909644 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 54
62909523 AGCATGGCTG
* * * *
62909533 CCAGAACAGATAATGCGACAGAGTCACCAAATACAGATAATCGTTGCAGAGCCA
1 CCAGAACAGATAATGCGACAAAGCCACCAAATACAGATAATCATGGCAGAGCCA
* * * * *
62909587 CCAGAACAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTATGGCATAGCCA
1 CCAGAACAGATA-ATGCGACAAAGCCACCAAATACAGATAATCATGGCAGAGCCA
62909641 CCAG
1 CCAG
62909645 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
54 33 0.69
55 15 0.31
ACGTcount: A:0.39, C:0.24, G:0.21, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATGCGACAAAGCCACCAAATACAGATAATCATGGCAGAGCCA
Found at i:62909812 original size:28 final size:26
Alignment explanation
Indices: 62909750--62909812 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
62909740 AAAGTAACCC
** *
62909750 TAGGGGTATAATGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTGCACA
*
62909776 TAGGGGTATAACAGTAATTTTTGATACA
1 TAGGGGTATAACAGTAA-TTTTG-CACA
62909804 TAGGGGTAT
1 TAGGGGTAT
62909813 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 15 0.48
27 5 0.16
28 11 0.35
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTGCACA
Found at i:62917449 original size:27 final size:26
Alignment explanation
Indices: 62917412--62917523 Score: 152
Period size: 27 Copynumber: 4.2 Consensus size: 26
62917402 AGCATGGCTT
* *
62917412 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
62917438 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
62917466 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
62917493 CTAGAACAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
62917520 CCAG
1 CCAG
62917524 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:62922549 original size:43 final size:43
Alignment explanation
Indices: 62922501--62922584 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
62922491 ATCGAGATGT
*
62922501 GATTACATGAAAGACCATGTCTGAGACATTGGCATT-GTATTGA
1 GATTACATGAAAGACCATATCTGAGACATTGGC-TTCGTATTGA
* * * *
62922544 GATTACGTGTAATACCATATCTGGGACATTGGCTTCGTATT
1 GATTACATGAAAGACCATATCTGAGACATTGGCTTCGTATT
62922585 ATAATTTCGT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 2 0.06
43 33 0.94
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (43 bp):
GATTACATGAAAGACCATATCTGAGACATTGGCTTCGTATTGA
Found at i:62922596 original size:43 final size:43
Alignment explanation
Indices: 62922514--62922598 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
62922504 TACATGAAAG
* *
62922514 ACCATGTCTGAGACATTGGCATTGTATTGAGATTACGTGTAAT
1 ACCATATCTGAGACATTGGCATTGTATTGAAATTACGTGTAAT
* *
62922557 ACCATATCTGGGACATTGGC-TTCGTATT-ATAATTTCGTGTAA
1 ACCATATCTGAGACATTGGCATT-GTATTGA-AATTACGTGTAA
62922599 GACCTTGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 3 0.08
43 33 0.92
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.36
Consensus pattern (43 bp):
ACCATATCTGAGACATTGGCATTGTATTGAAATTACGTGTAAT
Found at i:62930327 original size:93 final size:93
Alignment explanation
Indices: 62930168--62930338 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
62930158 GGATGGTTGA
* *
62930168 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
62930233 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
62930261 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
*
62930326 TGATTCCGAGTTC
66 TGAGTCCGAGTTC
62930339 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62930341 original size:46 final size:46
Alignment explanation
Indices: 62930172--62930343 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
62930162 GGTTGAGCAT
* * *
62930172 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
62930218 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
*
62930263 ATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
62930311 CCGAGCTCGTTGAGTTGATTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
62930344 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 58 0.56
47 27 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:62936140 original size:47 final size:47
Alignment explanation
Indices: 62936086--62936327 Score: 322
Period size: 47 Copynumber: 5.1 Consensus size: 47
62936076 TTAGGATTTT
** * **
62936086 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
62936133 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATA--TGTGATAAGGCCGAATGGCCA
** *
62936184 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
62936231 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
62936278 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCTGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
62936325 ATG
1 ATG
62936328 CGAAATGTGT
Statistics
Matches: 174, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
47 128 0.74
49 9 0.05
51 37 0.21
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:62936188 original size:24 final size:24
Alignment explanation
Indices: 62936160--62936235 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
62936150 CTGTATATAT
62936160 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
62936184 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
62936207 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
62936231 ATGTG
1 ATGTG
62936236 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:62936367 original size:46 final size:46
Alignment explanation
Indices: 62936301--62936391 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
62936291 GAACATGTAT
* ** * *
62936301 ATATGTGGTAAGGCTGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATAAGATGG
* *
62936347 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATAAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATAAGATG
62936392 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.29
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATAAGATGG
Found at i:62937949 original size:40 final size:40
Alignment explanation
Indices: 62937894--62938164 Score: 443
Period size: 40 Copynumber: 6.8 Consensus size: 40
62937884 AGAGTTATAT
62937894 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTAC
*
62937934 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTAC
* * *
62937974 ATCCGGGCTAAGTCTCGAAAAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTAC
* *
62938014 ATCCAGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTAC
*
62938054 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTAC
* *
62938094 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTAC
* *
62938134 ATCCGGGCTAAGTCCTGAAGGGCATTCGTGC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
62938165 CGGTGATGTG
Statistics
Matches: 212, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 212 1.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTAC
Found at i:62938112 original size:120 final size:120
Alignment explanation
Indices: 62937894--62938161 Score: 491
Period size: 120 Copynumber: 2.2 Consensus size: 120
62937884 AGAGTTATAT
*
62937894 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTACATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGTTACATCCGGGCTAAGTCCCGAAGAGCAT
62937959 TCGTGCTAGTGTTATATCCGGGCTAAGTCTCGAAAAGCATTCGTGCTGGTGTTAC
66 TCGTGCTAGTGTTATATCCGGGCTAAGTCTCGAAAAGCATTCGTGCTGGTGTTAC
*
62938014 ATCCAGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGTTACATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGTTACATCCGGGCTAAGTCCCGAAGAGCAT
*
62938079 TCGTGCTAGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTAC
66 TCGTGCTAGTGTTATATCCGGGCTAAGTCTCGAAAAGCATTCGTGCTGGTGTTAC
* *
62938134 ATCCGGGCTAAGTCCTGAAGGGCATTCG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCG
62938162 TGCCGGTGAT
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 142 1.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (120 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGCGCTAGTGTTACATCCGGGCTAAGTCCCGAAGAGCAT
TCGTGCTAGTGTTATATCCGGGCTAAGTCTCGAAAAGCATTCGTGCTGGTGTTAC
Found at i:62938372 original size:25 final size:25
Alignment explanation
Indices: 62938333--62938387 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
62938323 TGTGTAATAA
62938333 CGAATGAATATAGGCACTATGTGTG
1 CGAATGAATATAGGCACTATGTGTG
* *
62938358 CGAATGAAT-TGAGGCATTGTGTGTG
1 CGAATGAATAT-AGGCACTATGTGTG
62938383 CGAAT
1 CGAAT
62938388 TCTTTAATCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.29, C:0.11, G:0.31, T:0.29
Consensus pattern (25 bp):
CGAATGAATATAGGCACTATGTGTG
Found at i:62942356 original size:47 final size:47
Alignment explanation
Indices: 62942302--62942590 Score: 407
Period size: 47 Copynumber: 6.1 Consensus size: 47
62942292 TTAGGATTTT
** * * *
62942302 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
62942349 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATA--TGTGATAAGGCCGAATGGCCA
* *
62942400 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
62942447 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
62942494 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
62942541 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
62942588 ATG
1 ATG
62942591 CGAAACGTGT
Statistics
Matches: 223, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 176 0.79
49 9 0.04
51 38 0.17
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:62942630 original size:46 final size:46
Alignment explanation
Indices: 62942564--62942654 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
62942554 GAACATGTAT
* * *
62942564 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
62942610 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
62942655 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.33, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:62942661 original size:141 final size:140
Alignment explanation
Indices: 62942331--62942639 Score: 356
Period size: 141 Copynumber: 2.2 Consensus size: 140
62942321 GTATATATGA
* * * * * *
62942331 GATAAGGCCGAATGGCAAATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATG
1 GATAAAGCCAAATGGCCAATGTGATGAATGTGAACATG--CATATA--TGAGATAAGGCCGAATG
* * * *
62942396 GCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
62 GCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTG
62942461 AACATGCGTATGTGT
126 AACATGCGTATGTGT
* *
62942476 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 GATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * *
62942541 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATGCGA-AACGTGTATGA
66 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTG-A--A
*
62942605 GATG-GATATGTG-
128 CATGCG-TATGTGT
*
62942617 G-TAAAGCCAAATGGCTAATGTGA
1 GATAAAGCCAAATGGCCAATGTGA
62942640 GATATGTATG
Statistics
Matches: 145, Mismatches: 15, Indels: 13
0.84 0.09 0.08
Matches are distributed among these distances:
139 5 0.03
140 20 0.14
141 69 0.48
142 10 0.07
143 5 0.03
145 36 0.25
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.26
Consensus pattern (140 bp):
GATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTGAACAT
GCGTATGTGT
Found at i:62947849 original size:93 final size:93
Alignment explanation
Indices: 62947690--62947860 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
62947680 GGATGGTTGA
* *
62947690 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
62947755 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
62947783 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
*
62947848 TGATTCCGAGTTC
66 TGAGTCCGAGTTC
62947861 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62947863 original size:46 final size:46
Alignment explanation
Indices: 62947694--62947865 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
62947684 GGTTGAGCAT
* * *
62947694 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
62947740 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
62947785 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
62947833 CCGAGCTCGTTGAGTTGATTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
62947866 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 59 0.56
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:62953546 original size:40 final size:40
Alignment explanation
Indices: 62953500--62953724 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
62953490 CTTGCACAAG
* * *
62953500 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
62953540 GCCTTCGGGACTTAACCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
62953580 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAACACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
62953620 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
62953660 GCCTTTGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
62953701 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
62953725 CATTCGAATA
Statistics
Matches: 153, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 124 0.81
41 28 0.18
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:62953595 original size:80 final size:80
Alignment explanation
Indices: 62953464--62953724 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
62953454 CTCAAGTAAT
* * * * * * *
62953464 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
62953527 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
62953542 CTTCGGGACTTAACCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
* *
62953606 TCGCTAACACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
62953622 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTTGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
62953687 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
62953703 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
62953725 CATTCGAATA
Statistics
Matches: 150, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
78 11 0.07
79 16 0.11
80 91 0.61
81 32 0.21
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:62953685 original size:120 final size:121
Alignment explanation
Indices: 62953500--62953724 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 121
62953490 CTTGCACAAG
* * *
62953500 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGCCTTCGGGACTTAACCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGATATA
* * **
62953565 GTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAATCGCTAACACAAAT
66 GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAACACAAAT
* * * ** *
62953620 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGCCTT-TGGATCTTAGTCCGGTTA
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGA-CTTAACCCGGATA
62953683 TAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
64 TAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
62953725 CATTCGAATA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 4 0.04
120 53 0.60
121 32 0.36
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (121 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGATATA
GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAACACAAAT
Found at i:62959326 original size:19 final size:19
Alignment explanation
Indices: 62959288--62959324 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
62959278 CATTAGGTCA
*
62959288 AAATGGGCTATGTGGGCCC
1 AAATGGGCTACGTGGGCCC
62959307 AAATGGGCT-CGTGGGCCC
1 AAATGGGCTACGTGGGCCC
62959325 CACACAGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.19, C:0.24, G:0.38, T:0.19
Consensus pattern (19 bp):
AAATGGGCTACGTGGGCCC
Found at i:62959612 original size:54 final size:52
Alignment explanation
Indices: 62959538--62959721 Score: 217
Period size: 54 Copynumber: 3.4 Consensus size: 52
62959528 GTTATCTGAC
*
62959538 CGTAATGCCCTGTAGGGTAAAATGACCTTAATGCCATTGTAGGGTAAAATGAA
1 CGTAATGCCCTGTAGGGTAAAATGACCATAATGCC-TTGTAGGGTAAAATGAA
* *
62959591 CGTAATACCCTTGTAAGGTAAAATGACCATAATGCCCTTGTAGGGTAAAATG-A
1 CGTAATGCCC-TGTAGGGTAAAATGACCATAATG-CCTTGTAGGGTAAAATGAA
* * * * *
62959644 CTGTAATGCCCATATAGGGTAAAAAGACCATAATGCCTCTGTAAGGTAGAATGAT
1 C-GTAATGCCC-TGTAGGGTAAAATGACCATAATGCCT-TGTAGGGTAAAATGAA
*
62959699 CGTAATGTCCCTATAGGGTAAAA
1 CGTAATG-CCCTGTAGGGTAAAA
62959722 CGATTGTATT
Statistics
Matches: 114, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
53 14 0.12
54 94 0.82
55 6 0.05
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.26
Consensus pattern (52 bp):
CGTAATGCCCTGTAGGGTAAAATGACCATAATGCCTTGTAGGGTAAAATGAA
Found at i:62959687 original size:81 final size:80
Alignment explanation
Indices: 62959534--62959748 Score: 247
Period size: 81 Copynumber: 2.7 Consensus size: 80
62959524 GGTCGTTATC
* *
62959534 TGACCGTAATGCCCTGTAGGGTAAAATGACCT-TAATG-CCATTGTAGGGTAAAATGAACGTAAT
1 TGACCGTAATGCCCTGTAGGGTAAAATGA-CTGTAATGCCCA-TGTAGGGTAAAAAGAACATAAT
62959597 ACCCTTGTAAGGTAAAA
64 ACCCTTGTAAGGTAAAA
* * *
62959614 TGACCATAATGCCCTTGTAGGGTAAAATGACTGTAATGCCCATATAGGGTAAAAAGACCATAAT-
1 TGACCGTAATGCCC-TGTAGGGTAAAATGACTGTAATGCCCATGTAGGGTAAAAAGAACATAATA
* *
62959678 GCCTCTGTAAGGTAGAA
65 CCCT-TGTAAGGTAAAA
* * * * * *
62959695 TGATCGTAATGTCCCTATAGGGTAAAACGATTGTATTGCCCCTGTAGGGTAAAA
1 TGACCGTAATG-CCCTGTAGGGTAAAATGACTGTAATGCCCATGTAGGGTAAAA
62959749 TGACGATTAT
Statistics
Matches: 115, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 18 0.16
81 91 0.79
82 6 0.05
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.27
Consensus pattern (80 bp):
TGACCGTAATGCCCTGTAGGGTAAAATGACTGTAATGCCCATGTAGGGTAAAAAGAACATAATAC
CCTTGTAAGGTAAAA
Found at i:62959740 original size:54 final size:54
Alignment explanation
Indices: 62959534--62959752 Score: 203
Period size: 54 Copynumber: 4.1 Consensus size: 54
62959524 GGTCGTTATC
* * * * **
62959534 TGACCGTAATGCCC-TGTAGGGTAAAATGACCTTAATGCCATTGTAGGGTAAAA
1 TGACTGTAATGCCCATATAGGGTAAAAAGACCATAATGCCCCTGTAGGGTAAAA
* * * * * *
62959587 TGAAC-GTAATACCCTTGTAAGGTAAAATGACCATAATGCCCTTGTAGGGTAAAA
1 TG-ACTGTAATGCCCATATAGGGTAAAAAGACCATAATGCCCCTGTAGGGTAAAA
* * *
62959641 TGACTGTAATGCCCATATAGGGTAAAAAGACCATAATGCCTCTGTAAGGTAGAA
1 TGACTGTAATGCCCATATAGGGTAAAAAGACCATAATGCCCCTGTAGGGTAAAA
* *** *
62959695 TGA-TCGTAATGTCCC-TATAGGGTAAAACGATTGTATTGCCCCTGTAGGGTAAAA
1 TGACT-GTAATG-CCCATATAGGGTAAAAAGACCATAATGCCCCTGTAGGGTAAAA
62959749 TGAC
1 TGAC
62959753 GATTATGCCC
Statistics
Matches: 139, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
53 13 0.09
54 123 0.88
55 3 0.02
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (54 bp):
TGACTGTAATGCCCATATAGGGTAAAAAGACCATAATGCCCCTGTAGGGTAAAA
Found at i:62959761 original size:27 final size:27
Alignment explanation
Indices: 62959540--62959762 Score: 177
Period size: 27 Copynumber: 8.3 Consensus size: 27
62959530 TATCTGACCG
**
62959540 TAATG-CCCTGTAGGGTAAAATGACCT
1 TAATGCCCCTGTAGGGTAAAATGACGA
**
62959566 TAATGCCATTGTAGGGTAAAATGAACG-
1 TAATGCCCCTGTAGGGTAAAATG-ACGA
* * * *
62959593 TAATACCCTTGTAAGGTAAAATGACCA
1 TAATGCCCCTGTAGGGTAAAATGACGA
*
62959620 TAATGCCCTTGTAGGGTAAAATGACTG-
1 TAATGCCCCTGTAGGGTAAAATGAC-GA
* * * *
62959647 TAATGCCCATATAGGGTAAAAAGACCA
1 TAATGCCCCTGTAGGGTAAAATGACGA
* * *
62959674 TAATGCCTCTGTAAGGTAGAATGATCG-
1 TAATGCCCCTGTAGGGTAAAATGA-CGA
* * * *
62959701 TAATGTCCCTATAGGGTAAAACGATTG-
1 TAATGCCCCTGTAGGGTAAAATGA-CGA
*
62959728 TATTGCCCCTGTAGGGTAAAATGACGA
1 TAATGCCCCTGTAGGGTAAAATGACGA
*
62959755 TTATGCCC
1 TAATGCCC
62959763 TTATGTTCCG
Statistics
Matches: 155, Mismatches: 35, Indels: 13
0.76 0.17 0.06
Matches are distributed among these distances:
26 8 0.05
27 144 0.93
28 3 0.02
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (27 bp):
TAATGCCCCTGTAGGGTAAAATGACGA
Found at i:62959932 original size:27 final size:26
Alignment explanation
Indices: 62959888--62959971 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 26
62959878 ATGGAGGAAG
* * * *
62959888 TACTGTACTAGTGACTATGTCTC-AT
1 TACTGTACTGGTGGCTATGCCACAAT
62959913 TCACTGTTACTGGTGGCTATGCCACAAT
1 T-ACTG-TACTGGTGGCTATGCCACAAT
* *
62959941 TACTGATACTGGTGGCTTTGCCACATT
1 TACTG-TACTGGTGGCTATGCCACAAT
62959968 TACT
1 TACT
62959972 ATTTCTGGCA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
25 1 0.02
26 4 0.08
27 41 0.84
28 3 0.06
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (26 bp):
TACTGTACTGGTGGCTATGCCACAAT
Found at i:62959979 original size:27 final size:27
Alignment explanation
Indices: 62959915--62959971 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
62959905 TGTCTCATTC
*
62959915 ACTGTTACTGGTGGCTATGCCACAATT
1 ACTGATACTGGTGGCTATGCCACAATT
* *
62959942 ACTGATACTGGTGGCTTTGCCACATTT
1 ACTGATACTGGTGGCTATGCCACAATT
62959969 ACT
1 ACT
62959972 ATTTCTGGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (27 bp):
ACTGATACTGGTGGCTATGCCACAATT
Found at i:62960015 original size:26 final size:27
Alignment explanation
Indices: 62959956--62960015 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 27
62959946 ATACTGGTGG
* * *
62959956 CTTTGCCACATTTACTATTTCTGGCAG
1 CTTTGCTACATTTACTATTACTGGCAA
* *
62959983 CTATGCTACA-TTATTATTACTGGCAA
1 CTTTGCTACATTTACTATTACTGGCAA
62960009 CTTTGCT
1 CTTTGCT
62960016 GCAATATTGG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 19 0.70
27 8 0.30
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (27 bp):
CTTTGCTACATTTACTATTACTGGCAA
Found at i:62960023 original size:26 final size:26
Alignment explanation
Indices: 62959971--62960023 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
62959961 CCACATTTAC
* * *
62959971 TATTTCTGGCAGCTATGCTACATTAT
1 TATTACTGGCAACTATGCTACAATAT
* *
62959997 TATTACTGGCAACTTTGCTGCAATAT
1 TATTACTGGCAACTATGCTACAATAT
62960023 T
1 T
62960024 GGTGTGCTGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.42
Consensus pattern (26 bp):
TATTACTGGCAACTATGCTACAATAT
Found at i:62964981 original size:47 final size:46
Alignment explanation
Indices: 62964862--62965032 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
62964852 AGGATATTTG
*
62964862 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGA
* * *
62964909 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATG---CGA
* *
62964955 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGA
* * *
62965002 -AC-GCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
62965033 GCTTATGGGC
Statistics
Matches: 106, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 4 0.04
45 30 0.28
46 34 0.32
47 32 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (46 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGA
Found at i:62965024 original size:45 final size:46
Alignment explanation
Indices: 62964866--62965040 Score: 207
Period size: 45 Copynumber: 3.8 Consensus size: 46
62964856 TATTTGGGCA
*
62964866 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
62964912 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
62964957 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
62965005 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62965041 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 38 0.34
46 29 0.26
47 28 0.25
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:62968000 original size:15 final size:15
Alignment explanation
Indices: 62967961--62968039 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
62967951 GTATCTTGGG
*
62967961 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
62967976 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
62967991 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
62968005 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
62968020 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
62968034 TTTCTT
1 TTTCTT
62968040 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:62968024 original size:29 final size:29
Alignment explanation
Indices: 62967952--62968038 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
62967942 CATAGTATCG
* * * *
62967952 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
62967982 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
62968011 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
62968039 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:62970468 original size:46 final size:46
Alignment explanation
Indices: 62970415--62970590 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
62970405 TATTTGGGCA
62970415 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
62970461 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
62970508 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
62970554 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62970591 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 65 0.59
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:62970570 original size:93 final size:93
Alignment explanation
Indices: 62970411--62970583 Score: 303
Period size: 93 Copynumber: 1.9 Consensus size: 93
62970401 GGGATATTTG
*
62970411 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
62970476 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
62970504 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
62970568 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
62970584 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:62983405 original size:19 final size:19
Alignment explanation
Indices: 62983381--62983418 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
62983371 TGGGCCACAT
62983381 TGGGCCAAAATGGGC-CGTG
1 TGGGCC-AAATGGGCTCGTG
*
62983400 TGGGCCCAATGGGCTCGTG
1 TGGGCCAAATGGGCTCGTG
62983419 AGCCCCACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.16, C:0.24, G:0.42, T:0.18
Consensus pattern (19 bp):
TGGGCCAAATGGGCTCGTG
Found at i:62983684 original size:27 final size:27
Alignment explanation
Indices: 62983639--62983798 Score: 180
Period size: 27 Copynumber: 5.9 Consensus size: 27
62983629 TATCTGGCCG
62983639 TAATGCCCCTGTAGGGTAAAATGACCA
1 TAATGCCCCTGTAGGGTAAAATGACCA
* ** *
62983666 TAATGCCCCTATAATGTAAAATGATCA
1 TAATGCCCCTGTAGGGTAAAATGACCA
* *
62983693 TAATGCCCTTGTAGGGTGAAATGACCA
1 TAATGCCCCTGTAGGGTAAAATGACCA
* * * *
62983720 TAATAG-TCCTGTAAGGTAGAATGACCG
1 TAAT-GCCCCTGTAGGGTAAAATGACCA
*
62983747 TAATGTCCCTGTAGGGTAAAATGA-CA
1 TAATGCCCCTGTAGGGTAAAATGACCA
*
62983773 GTAATGCCCCTATAGGGTAAAATGAC
1 -TAATGCCCCTGTAGGGTAAAATGAC
62983799 GATTGTGCCC
Statistics
Matches: 107, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.02
27 104 0.97
28 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
TAATGCCCCTGTAGGGTAAAATGACCA
Found at i:62983781 original size:81 final size:81
Alignment explanation
Indices: 62983646--62983798 Score: 200
Period size: 81 Copynumber: 1.9 Consensus size: 81
62983636 CCGTAATGCC
* * * * *
62983646 CCTGTAGGGTAAAATGACCATAATGCCCCTATAATGTAAAATGATCATAATGCCCTTGTAGGGTG
1 CCTGTAAGGTAAAATGACCATAATGCCCCTATAAGGTAAAATGATCATAATGCCCCTATAGGGTA
62983711 AAATGACCATAATAGT
66 AAATGACCATAATAGT
* * * * *
62983727 CCTGTAAGGTAGAATGACCGTAATGTCCCTGTAGGGTAAAATGA-CAGTAATGCCCCTATAGGGT
1 CCTGTAAGGTAAAATGACCATAATGCCCCTATAAGGTAAAATGATCA-TAATGCCCCTATAGGGT
62983791 AAAATGAC
65 AAAATGAC
62983799 GATTGTGCCC
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
80 2 0.03
81 59 0.97
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (81 bp):
CCTGTAAGGTAAAATGACCATAATGCCCCTATAAGGTAAAATGATCATAATGCCCCTATAGGGTA
AAATGACCATAATAGT
Found at i:62983932 original size:27 final size:27
Alignment explanation
Indices: 62983889--62983958 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
62983879 ATGGAGGTGA
* *
62983889 CTATGTCAC-ATTCACTATTACTAGAGG
1 CTATGCCACAATT-ACTAATACTAGAGG
* *
62983916 CTATGCCACAATTACTAATACTGGTGG
1 CTATGCCACAATTACTAATACTAGAGG
* *
62983943 CTTTGCCACATTTACT
1 CTATGCCACAATTACT
62983959 GTTTCTGGCA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
27 33 0.92
28 3 0.08
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.34
Consensus pattern (27 bp):
CTATGCCACAATTACTAATACTAGAGG
Found at i:62994617 original size:27 final size:27
Alignment explanation
Indices: 62994580--62994784 Score: 223
Period size: 27 Copynumber: 7.6 Consensus size: 27
62994570 TAAATTGTAC
*
62994580 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62994607 AGCACTAAGTGTGCGATTTGACCATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** **
62994634 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62994660 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
62994688 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62994715 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * * *
62994743 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62994770 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62994785 GACTTAATAT
Statistics
Matches: 152, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
27 128 0.84
28 24 0.16
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62994641 original size:54 final size:54
Alignment explanation
Indices: 62994581--62994784 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
62994571 AAATTGTACA
* * *
62994581 GCACTAAGTGTGCGATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
** ** * *
62994635 GCACTAAGTGTGCGAAATGAAAATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGACTATGTA-GCACTAAGTGTGCGATTTGACCATGTG
**
62994689 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-TTTGACCATGTG
* * *
62994744 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
62994785 GACTTAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
Found at i:63002735 original size:27 final size:27
Alignment explanation
Indices: 63002698--63002901 Score: 223
Period size: 27 Copynumber: 7.6 Consensus size: 27
63002688 TAAATTGTAC
*
63002698 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63002725 AGCACTAAGTGTGCGATTTGACCATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * **
63002752 TGCACTAAGTGTGCGA-ATGAAAATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63002777 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
63002805 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63002832 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * * *
63002860 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63002887 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63002902 GACTTAATAT
Statistics
Matches: 151, Mismatches: 22, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
26 21 0.14
27 106 0.70
28 24 0.16
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63002810 original size:80 final size:80
Alignment explanation
Indices: 63002699--63002847 Score: 226
Period size: 80 Copynumber: 1.9 Consensus size: 80
63002689 AAATTGTACA
* * * * * *
63002699 GCACTAAGTGTGCGATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTTGACCATGTAGCACTAAGTGT
63002764 GCGAATGAAAATGAT
66 GCGAATGAAAATGAT
* *
63002779 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGT
1 GCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTTGACCATGTAGCACTAAGTGT
63002844 GCGA
66 GCGA
63002848 GTTTGATTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 61 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (80 bp):
GCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTTGACCATGTAGCACTAAGTGT
GCGAATGAAAATGAT
Found at i:63002874 original size:55 final size:54
Alignment explanation
Indices: 63002699--63002901 Score: 257
Period size: 55 Copynumber: 3.8 Consensus size: 54
63002689 AAATTGTACA
* * *
63002699 GCACTAAGTGTGCGATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
* ** * *
63002753 GCACTAAGTGTGCGA-ATGAAAATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGACTATGTA-GCACTAAGTGTGCGATTTGACCATGTG
**
63002806 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-TTTGACCATGTG
* * *
63002861 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
63002902 GACTTAATAT
Statistics
Matches: 128, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 1 0.01
53 44 0.34
54 36 0.28
55 47 0.37
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.30
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
Found at i:63004862 original size:40 final size:39
Alignment explanation
Indices: 63004807--63005030 Score: 234
Period size: 40 Copynumber: 5.6 Consensus size: 39
63004797 TATTCAGATG
**
63004807 ATATCCGGGCTAAGTCTTGAAGGCATTTGTGTAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGT-AGTTACT
** * *
63004847 ATATCCGGGCTAAGTCCAAAAGGCATTTTTACGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCA--TTT--GTGTAGTTACT
* *
63004890 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TAGTTACT
** *
63004930 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TAGTTACT
* * *
63004970 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TAGTTACT
*
63005010 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
63005031 ATACTTGGGT
Statistics
Matches: 157, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 15 0.10
40 105 0.67
41 3 0.02
42 3 0.02
43 28 0.18
44 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTAGTTACT
Found at i:63004953 original size:83 final size:80
Alignment explanation
Indices: 63004811--63005030 Score: 250
Period size: 83 Copynumber: 2.7 Consensus size: 80
63004801 CAGATGATAT
** * **
63004811 CCGGGCTAAGTCTTGAAGGCATTTGTG-TAAGTTACTATATCCGGGCTAAGTCCAAAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTATATCCGGGCTAAGTCCCGAAGGCA--T
* *
63004875 TTACGAGTAGTTG-CTATAC
63 TCACG-CTAG-TGACTATAC
63004894 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
* *
63004959 TGCTAGTGACTATAT
66 CGCTAGTGACTATAC
* * *
63004974 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAG
63005031 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
79 16 0.13
80 45 0.37
81 6 0.05
83 54 0.44
84 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
CGCTAGTGACTATAC
Found at i:63008183 original size:33 final size:33
Alignment explanation
Indices: 63008136--63008202 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
63008126 TCTCGGATGA
*
63008136 TAGTAAATTATAAGCTCGTAGTCTTTTAGCAAT
1 TAGTAAATTATAAGCTCATAGTCTTTTAGCAAT
* *
63008169 TAGTCAATTATAAGCTCATAGTTTTTTAGCAAT
1 TAGTAAATTATAAGCTCATAGTCTTTTAGCAAT
63008202 T
1 T
63008203 CTAACCATCG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (33 bp):
TAGTAAATTATAAGCTCATAGTCTTTTAGCAAT
Found at i:63015018 original size:30 final size:30
Alignment explanation
Indices: 63014984--63015040 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
63014974 TCCTTAACTC
63014984 AAACTTTTGAAAAATTACAATTTTGCCCAT
1 AAACTTTTGAAAAATTACAATTTTGCCCAT
* * * *
63015014 AAACTTTTGCATATTTACACTTTTGCC
1 AAACTTTTGAAAAATTACAATTTTGCC
63015041 ACTAGGCTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.40
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCAT
Found at i:63023101 original size:21 final size:21
Alignment explanation
Indices: 63023068--63023121 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
63023058 AACATGGGTC
* *
63023068 ACACGCCCGTGTGGGTATAGG
1 ACACACCCATGTGGGTATAGG
*
63023089 ACACACCCATGTGGGTATGGG
1 ACACACCCATGTGGGTATAGG
63023110 ACACACCCATGT
1 ACACACCCATGT
63023122 TCCAACCCCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.24, C:0.28, G:0.30, T:0.19
Consensus pattern (21 bp):
ACACACCCATGTGGGTATAGG
Found at i:63023115 original size:23 final size:22
Alignment explanation
Indices: 63023061--63023121 Score: 72
Period size: 21 Copynumber: 2.8 Consensus size: 22
63023051 TTCACTAAAC
* *
63023061 ATGGGTCACACGCCCGTGTGGGT
1 ATGGG-CACACACCCATGTGGGT
*
63023084 ATAGG-ACACACCCATGTGGGT
1 ATGGGCACACACCCATGTGGGT
63023105 ATGGG-ACACACCCATGT
1 ATGGGCACACACCCATGT
63023122 TCCAACCCCG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 30 0.88
23 4 0.12
ACGTcount: A:0.23, C:0.26, G:0.31, T:0.20
Consensus pattern (22 bp):
ATGGGCACACACCCATGTGGGT
Found at i:63024934 original size:28 final size:28
Alignment explanation
Indices: 63024849--63024950 Score: 116
Period size: 28 Copynumber: 3.7 Consensus size: 28
63024839 ATTGCATGAC
* *
63024849 TATGAGTGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* * *
63024877 TATGAAAGTGATTGGGCCTGCTGGGTCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
63024905 TATGAATGTGATTGGGCCCGATGTGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
63024933 TATAAATGAGA-TGGGCCT
1 TATGAATGTGATTGGGCCT
63024951 AAAGAGGCCA
Statistics
Matches: 61, Mismatches: 13, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
27 6 0.10
28 55 0.90
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:63029543 original size:31 final size:31
Alignment explanation
Indices: 63029508--63029569 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
63029498 CCAAAAAGAG
63029508 ATAAACCTTAGGCGGTGTAGGTGGGTAGAAT
1 ATAAACCTTAGGCGGTGTAGGTGGGTAGAAT
63029539 ATAAACCTTAGGCGGTGTAGGTGGGTAGAAT
1 ATAAACCTTAGGCGGTGTAGGTGGGTAGAAT
63029570 TATTGAAGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.35, T:0.26
Consensus pattern (31 bp):
ATAAACCTTAGGCGGTGTAGGTGGGTAGAAT
Found at i:63032720 original size:28 final size:28
Alignment explanation
Indices: 63032689--63032775 Score: 129
Period size: 28 Copynumber: 3.1 Consensus size: 28
63032679 TGTCACTGGA
* *
63032689 CCTGACGGGCCATATGAAAGTGATTGGG
1 CCTGATGGGCCATATGAATGTGATTGGG
*
63032717 CCTGATGGGCCATATGTATGTGATTGGG
1 CCTGATGGGCCATATGAATGTGATTGGG
* *
63032745 CCCGATGGGCCATATGAATGAGATTGGG
1 CCTGATGGGCCATATGAATGTGATTGGG
63032773 CCT
1 CCT
63032776 AAAGGGGCCA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.22, C:0.18, G:0.34, T:0.25
Consensus pattern (28 bp):
CCTGATGGGCCATATGAATGTGATTGGG
Found at i:63038246 original size:10 final size:11
Alignment explanation
Indices: 63038219--63038248 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
63038209 ATTGAAGGTT
63038219 TGTTTTTGTTC
1 TGTTTTTGTTC
63038230 TGTTTTTGTTC
1 TGTTTTTGTTC
63038241 TGTTTTTG
1 TGTTTTTG
63038249 ATGATTTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.00, C:0.07, G:0.20, T:0.73
Consensus pattern (11 bp):
TGTTTTTGTTC
Found at i:63044587 original size:29 final size:29
Alignment explanation
Indices: 63044554--63044627 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
63044544 GTTGTGAGAT
* *
63044554 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
63044583 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
63044612 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63044628 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:63053950 original size:29 final size:29
Alignment explanation
Indices: 63053917--63053990 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
63053907 GTTGTGAGAT
* *
63053917 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* * *
63053946 TGGCACTAAGTGTGAGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
63053975 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63053991 CGGTTGATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 6 0.16
29 32 0.84
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:63056617 original size:25 final size:25
Alignment explanation
Indices: 63056589--63056644 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
63056579 GTATGCTCTC
*
63056589 ACGAGCTGCAG-ATCGGTAAGATCAT
1 ACGAGCTG-AGAATAGGTAAGATCAT
* *
63056614 ACGAGTTGAGAATAGGTAAGCTCAT
1 ACGAGCTGAGAATAGGTAAGATCAT
63056639 ACGAGC
1 ACGAGC
63056645 CGTGGTGTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.20
Consensus pattern (25 bp):
ACGAGCTGAGAATAGGTAAGATCAT
Found at i:63059055 original size:18 final size:19
Alignment explanation
Indices: 63059011--63059057 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
63059001 AAAGGTTAGT
**
63059011 AATGTAAATTGTTAAATAA
1 AATGTAAATTAATAAATAA
63059030 AA-GATAAATTAATAAA-AA
1 AATG-TAAATTAATAAATAA
63059048 AATGTAAATT
1 AATGTAAATT
63059058 TTCTTCATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.32
Consensus pattern (19 bp):
AATGTAAATTAATAAATAA
Found at i:63065296 original size:29 final size:30
Alignment explanation
Indices: 63065227--63065350 Score: 125
Period size: 29 Copynumber: 4.3 Consensus size: 30
63065217 ACCCCTACAT
* *
63065227 ATATGCATATGGCCTA-CTAGGCCCAA-TC
1 ATATTCATATGGCCCATCTAGGCCCAATTC
* *
63065255 TTATTCAAATGGCCCATCT-GGCCCAATTC
1 ATATTCATATGGCCCATCTAGGCCCAATTC
* *
63065284 ATATTCTTATGGCCCA-CTATGCCCAATTC
1 ATATTCATATGGCCCATCTAGGCCCAATTC
* * *
63065313 ACATTCATATGACCCAT-TAGGCCCAAATC
1 ATATTCATATGGCCCATCTAGGCCCAATTC
63065342 ATATT-ATAT
1 ATATTCATAT
63065351 TCATGCTCAC
Statistics
Matches: 78, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
28 25 0.32
29 53 0.68
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (30 bp):
ATATTCATATGGCCCATCTAGGCCCAATTC
Found at i:63065297 original size:57 final size:58
Alignment explanation
Indices: 63065234--63065346 Score: 140
Period size: 58 Copynumber: 2.0 Consensus size: 58
63065224 CATATATGCA
* ** * *
63065234 TATGGCCTACTAGGCCCAA-TCTTATTCAAATGGCCCATCT-GGCCCAATTCATATTCT
1 TATGGCCCACTAGGCCCAATTCACATTCAAATGACCCAT-TAGGCCCAAATCATATTCT
* *
63065291 TATGGCCCACTATGCCCAATTCACATTCATATGACCCATTAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAATTCACATTCAAATGACCCATTAGGCCCAAATCATATT
63065347 ATATTCATGC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
57 18 0.38
58 29 0.62
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.30
Consensus pattern (58 bp):
TATGGCCCACTAGGCCCAATTCACATTCAAATGACCCATTAGGCCCAAATCATATTCT
Found at i:63065452 original size:19 final size:19
Alignment explanation
Indices: 63065418--63065465 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
63065408 ATGGGCCCAA
*
63065418 TAGCCCA-TCAGGCCCATT
1 TAGCCCATTCTGGCCCATT
63065436 TAGCCCATTCTGGCCCATT
1 TAGCCCATTCTGGCCCATT
* *
63065455 TGGCCAATTCT
1 TAGCCCATTCT
63065466 CAACCCAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 7 0.27
19 19 0.73
ACGTcount: A:0.19, C:0.35, G:0.17, T:0.29
Consensus pattern (19 bp):
TAGCCCATTCTGGCCCATT
Found at i:63066851 original size:16 final size:16
Alignment explanation
Indices: 63066826--63066858 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
63066816 AAAAATTCAA
*
63066826 GATTTTGGGATTTTTG
1 GATTTCGGGATTTTTG
63066842 GATTTCGGGATTTTTG
1 GATTTCGGGATTTTTG
63066858 G
1 G
63066859 GCGTTACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.03, G:0.33, T:0.52
Consensus pattern (16 bp):
GATTTCGGGATTTTTG
Found at i:63080280 original size:39 final size:39
Alignment explanation
Indices: 63080233--63080376 Score: 216
Period size: 39 Copynumber: 3.7 Consensus size: 39
63080223 TGTGTGAGAT
63080233 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGATG
1 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGATG
* *
63080272 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGATG
1 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGATG
* * ** *
63080311 TTATATCCAGGCTAAATCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGATG
*
63080350 TTATATTCGGGCTAAGTCCCAAAGGCA
1 TTATATCCGGGCTAAGTCCCAAAGGCA
63080377 ATTGTGTGCT
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 93 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGATG
Found at i:63086146 original size:14 final size:14
Alignment explanation
Indices: 63086123--63086152 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
63086113 GACTCTATGA
*
63086123 AAGGTTGATATCCT
1 AAGGTCGATATCCT
63086137 AAGGTCGATATCCT
1 AAGGTCGATATCCT
63086151 AA
1 AA
63086153 CTTATTCACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (14 bp):
AAGGTCGATATCCT
Found at i:63088278 original size:39 final size:39
Alignment explanation
Indices: 63088224--63088374 Score: 184
Period size: 39 Copynumber: 3.9 Consensus size: 39
63088214 CAGGCCTTGT
*
63088224 GTGA-GAT-TTATATTCGGGCTAAGTCTCGAAGGCATTC
1 GTGATGATGTTATATTCGGGCTAAGTCCCGAAGGCATTC
*
63088261 GTGATGATGTTATATTCGGGCTAAGTCCCAAAGGCATTC
1 GTGATGATGTTATATTCGGGCTAAGTCCCGAAGGCATTC
* * * *
63088300 GTGCTGGTGTTATATCCGGGCTAAATCCCGAAGGCATTC
1 GTGATGATGTTATATTCGGGCTAAGTCCCGAAGGCATTC
* *
63088339 GTGCT-AGTGTTATA-TCTGGGCTATGTCCCGAAGGCA
1 GTGATGA-TGTTATATTC-GGGCTAAGTCCCGAAGGCA
63088375 ATTGTGTTGG
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
37 4 0.04
38 4 0.04
39 91 0.92
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (39 bp):
GTGATGATGTTATATTCGGGCTAAGTCCCGAAGGCATTC
Found at i:63098671 original size:17 final size:17
Alignment explanation
Indices: 63098607--63098671 Score: 55
Period size: 17 Copynumber: 3.9 Consensus size: 17
63098597 TGGCTTTCGT
*
63098607 TTTTTATTTTATTTATG
1 TTTTTATTTTACTTATG
* * *
63098624 -TTTTATGTTA-TAATA
1 TTTTTATTTTACTTATG
*
63098639 TATTTTA-TTAACTTATG
1 T-TTTTATTTTACTTATG
63098656 TTTTTATTTTACTTAT
1 TTTTTATTTTACTTAT
63098672 TTAACCATGC
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
15 3 0.08
16 16 0.44
17 17 0.47
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.68
Consensus pattern (17 bp):
TTTTTATTTTACTTATG
Found at i:63107167 original size:27 final size:27
Alignment explanation
Indices: 63107137--63107195 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
63107127 TTAACACCCT
63107137 AGGGGCAAAAT-GGTAATTCTACCCTAC
1 AGGGG-AAAATCGGTAATTCTACCCTAC
* ** *
63107164 AGGGGTATTTCGGTAATTTTACCCTAC
1 AGGGGAAAATCGGTAATTCTACCCTAC
63107191 AGGGG
1 AGGGG
63107196 TATTTTAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (27 bp):
AGGGGAAAATCGGTAATTCTACCCTAC
Found at i:63107196 original size:27 final size:27
Alignment explanation
Indices: 63107148--63107210 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
63107138 GGGGCAAAAT
*
63107148 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
63107175 GGTAATTTTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
*
63107202 AGTAATTTT
1 GGTAATTTT
63107211 GCAAATCAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:63107223 original size:27 final size:27
Alignment explanation
Indices: 63107193--63107278 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 27
63107183 TACCCTACAG
*
63107193 GGGTATTTTAGTAATTTTGCAAATCAA
1 GGGTATTTTGGTAATTTTGCAAATCAA
* * ** *
63107220 GGGTATTTTGGTAGTTTTACAACCCAG
1 GGGTATTTTGGTAATTTTGCAAATCAA
* *
63107247 GGGTATTTTGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGCAAATCAA
63107274 GGGTA
1 GGGTA
63107279 AAATGGTAAT
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.27, C:0.08, G:0.26, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGCAAATCAA
Found at i:63107224 original size:54 final size:53
Alignment explanation
Indices: 63107166--63107278 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 53
63107156 TACCCTACAG
63107166 GGGTATTTCGGTAATTTTAC-CCTACAGGGGTATTTTAGTAATTTTGCAAATCAA
1 GGGTATTTCGGTAATTTTACACC--CAGGGGTATTTTAGTAATTTTGCAAATCAA
* * * * *
63107220 GGGTATTTTGGTAGTTTTACAACCCAGGGGTATTTTGGTAATTTTGTAAATCGA
1 GGGTATTTCGGTAATTTTAC-ACCCAGGGGTATTTTAGTAATTTTGCAAATCAA
63107274 GGGTA
1 GGGTA
63107279 AAATGGTAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 50 0.96
56 2 0.04
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.39
Consensus pattern (53 bp):
GGGTATTTCGGTAATTTTACACCCAGGGGTATTTTAGTAATTTTGCAAATCAA
Found at i:63107285 original size:27 final size:27
Alignment explanation
Indices: 63107255--63107488 Score: 310
Period size: 27 Copynumber: 8.7 Consensus size: 27
63107245 AGGGGTATTT
*
63107255 TGGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAA
*
63107282 TGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAA
*
63107309 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TGGTAATTCTGTAAATC-GAGGGTAAAA
63107336 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAA
*
63107363 TGGTAATTCTATAAA-CTGAGGGTAAAA
1 TGGTAATTCTGTAAATC-GAGGGTAAAA
*
63107390 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAA
* * * ** *
63107417 CGATAATTTTAAAAATTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAA
* *
63107444 CGATAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAA
*
63107471 CGGTAATTCTGTAAATCG
1 TGGTAATTCTGTAAATCG
63107489 GGAGTACTTT
Statistics
Matches: 185, Mismatches: 18, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
26 2 0.01
27 181 0.98
28 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
TGGTAATTCTGTAAATCGAGGGTAAAA
Found at i:63107505 original size:81 final size:81
Alignment explanation
Indices: 63107255--63107519 Score: 329
Period size: 81 Copynumber: 3.3 Consensus size: 81
63107245 AGGGGTATTT
* **
63107255 TGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTG
1 TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTG
63107320 TAAA-CTGAGGGTAAAA
66 TAAATC-GAGGGTAAAA
* *
63107336 TGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCT
1 TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTCT
63107400 GTAAATCGAGGGTAAAA
65 GTAAATCGAGGGTAAAA
* * * * * * *
63107417 CGATAATTTTAAAAATTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
1 TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTG
***
63107482 TAAATCG-GGAGTACTT
66 TAAATCGAGG-GTAAAA
* *
63107498 TGGTAATTTTACAAGTCGAGGG
1 TGGTAATTTTATAAATCGAGGG
63107520 CATTTCAGTA
Statistics
Matches: 160, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
80 3 0.02
81 155 0.97
82 2 0.01
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (81 bp):
TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:63113331 original size:16 final size:16
Alignment explanation
Indices: 63113312--63113342 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
63113302 GGCAAATCTC
63113312 GAAAAGCTGAAATGCT
1 GAAAAGCTGAAATGCT
63113328 GAAAAGCTGAAATGC
1 GAAAAGCTGAAATGC
63113343 CAAAAAGTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.13, G:0.26, T:0.16
Consensus pattern (16 bp):
GAAAAGCTGAAATGCT
Found at i:63113348 original size:16 final size:16
Alignment explanation
Indices: 63113313--63113349 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
63113303 GCAAATCTCG
**
63113313 AAAAGCTGAAATGCTG
1 AAAAGCTGAAATGCCA
63113329 AAAAGCTGAAATGCCA
1 AAAAGCTGAAATGCCA
63113345 AAAAG
1 AAAAG
63113350 TCGAAAGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.14, G:0.22, T:0.14
Consensus pattern (16 bp):
AAAAGCTGAAATGCCA
Found at i:63113612 original size:29 final size:29
Alignment explanation
Indices: 63113570--63113626 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
63113560 CATGACTGTG
63113570 AATGTGATATGGGCCAAATGGGCCATATA
1 AATGTGATATGGGCCAAATGGGCCATATA
* *
63113599 AATGTGATTTGGGCCTAATGGGCCATAT
1 AATGTGATATGGGCCAAATGGGCCATAT
63113627 GAATAATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (29 bp):
AATGTGATATGGGCCAAATGGGCCATATA
Found at i:63122787 original size:68 final size:67
Alignment explanation
Indices: 63122715--63122864 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
63122705 CATCATGTGT
* * * *
63122715 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
63122777 ATGTAG
62 ATGTAG
** * *
63122783 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
63122848 AG
66 AG
63122850 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
63122865 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:63122820 original size:64 final size:64
Alignment explanation
Indices: 63122739--63122922 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
63122729 AGACATTATG
* *
63122739 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
63122803 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63122868 AA
63 AA
* * * *
63122870 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
63122923 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63147791 original size:25 final size:29
Alignment explanation
Indices: 63147737--63147801 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 29
63147727 TTATTTTCAC
63147737 TTTTATCTTTATTTATCTTCTTTAAGTACT-
1 TTTTAT-TTTATTTATC-TCTTTAAGTACTA
63147767 TTTTATTTTATTT-TC-CTTTAA-TACTA
1 TTTTATTTTATTTATCTCTTTAAGTACTA
*
63147793 TTTCATTTT
1 TTTTATTTT
63147802 TAGGTTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 4 0.12
26 14 0.42
28 2 0.06
29 7 0.21
30 6 0.18
ACGTcount: A:0.20, C:0.12, G:0.02, T:0.66
Consensus pattern (29 bp):
TTTTATTTTATTTATCTCTTTAAGTACTA
Found at i:63151652 original size:27 final size:26
Alignment explanation
Indices: 63151612--63151720 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 26
63151602 AGCATGGCTG
* *
63151612 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
63151638 CCAGATACAAATAATCGTGGCAGTGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
63151666 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
63151693 CTAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
63151720 C
1 C
63151721 TAGGACGCTT
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
26 6 0.09
27 48 0.69
28 16 0.23
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:63158587 original size:40 final size:40
Alignment explanation
Indices: 63158525--63158771 Score: 244
Period size: 40 Copynumber: 6.2 Consensus size: 40
63158515 CGGATGATAA
* *
63158525 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATAT
* * *
63158565 TCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
*
63158605 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATAT
*
63158645 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
* * *
63158683 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
* *
63158724 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTAATAT
63158764 CC-GGCTAA
1 CCGGGCTAA
63158772 ACTCCGAAGG
Statistics
Matches: 176, Mismatches: 18, Indels: 27
0.80 0.08 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 39 0.22
40 126 0.72
41 5 0.03
42 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
Found at i:63158728 original size:79 final size:80
Alignment explanation
Indices: 63158566--63158748 Score: 287
Period size: 79 Copynumber: 2.3 Consensus size: 80
63158556 TGGCTAATTT
* *
63158566 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
* * *
63158631 GCGAGCTATTATATC
66 GCAAGCTACTATAAC
* *
63158646 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
63158710 GCAAGTTACTATAAC
66 GCAAGCTACTATAAC
63158725 CGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
63158749 AGCTAGTGGC
Statistics
Matches: 95, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 60 0.63
80 35 0.37
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACTATAAC
Found at i:63158781 original size:79 final size:79
Alignment explanation
Indices: 63158566--63158771 Score: 281
Period size: 79 Copynumber: 2.6 Consensus size: 79
63158556 TGGCTAATTT
* *
63158566 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
* * *
63158631 GCGAGCTATTATATC
65 GCAAGCTACTATAAC
*
63158646 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
63158710 GCAAGTTACTATAAC
65 GCAAGCTACTATAAC
* * *
63158725 CGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
63158772 ACTCCGAAGG
Statistics
Matches: 112, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 74 0.66
80 37 0.33
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
CAAGCTACTATAAC
Done.