Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 192 of 352
Found at i:63163771 original size:40 final size:40
Alignment explanation
Indices: 63163710--63163956 Score: 327
Period size: 40 Copynumber: 6.2 Consensus size: 40
63163700 CGGAATTTAG
* * * *
63163710 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
63163750 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
63163790 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
63163830 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
63163870 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
63163910 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
63163950 CCGGATA
1 CCGGATA
63163957 TCATTCAAAT
Statistics
Matches: 188, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 182 0.97
41 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:63171078 original size:40 final size:40
Alignment explanation
Indices: 63171017--63171263 Score: 327
Period size: 40 Copynumber: 6.2 Consensus size: 40
63171007 CGGAATTTAG
* * * *
63171017 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
63171057 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
63171097 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
63171137 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
63171177 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
63171217 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
63171257 CCGGATA
1 CCGGATA
63171264 TCATTCAAAT
Statistics
Matches: 188, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 182 0.97
41 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:63176388 original size:34 final size:34
Alignment explanation
Indices: 63176349--63176413 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
63176339 TACCAATTGA
63176349 TTACTAGCCTATACATGCCATATAACATATTTAC
1 TTACTAGCCTATACATGCCATATAACATATTTAC
63176383 TTACTAGCCTATACATGCCATATAACATATT
1 TTACTAGCCTATACATGCCATATAACATATT
63176414 CACACACTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.35
Consensus pattern (34 bp):
TTACTAGCCTATACATGCCATATAACATATTTAC
Found at i:63184921 original size:19 final size:19
Alignment explanation
Indices: 63184882--63184918 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
63184872 CATTGGGTCA
*
63184882 AAATGGGCTATGTGGGCCC
1 AAATGGGCTACGTGGGCCC
63184901 AAATGGGCT-CGTGGGCCC
1 AAATGGGCTACGTGGGCCC
63184919 CAACAGGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.19, C:0.24, G:0.38, T:0.19
Consensus pattern (19 bp):
AAATGGGCTACGTGGGCCC
Found at i:63185163 original size:27 final size:27
Alignment explanation
Indices: 63185127--63185346 Score: 260
Period size: 27 Copynumber: 8.1 Consensus size: 27
63185117 GGTCGTTATC
*
63185127 TGACTGTAATGCCCCTGTAGGGTAAAA
1 TGACCGTAATGCCCCTGTAGGGTAAAA
* ** *
63185154 TGACCTTAATGCCATTATAGGGTAAAA
1 TGACCGTAATGCCCCTGTAGGGTAAAA
* * *
63185181 TGAACGTAATGCCCTTGTAAGGTAAAA
1 TGACCGTAATGCCCCTGTAGGGTAAAA
*
63185208 TGACCGTAATGCCCTTGTAGGGTAAAA
1 TGACCGTAATGCCCCTGTAGGGTAAAA
*
63185235 TGACCGTAATGCCCATGTAGGGTAAAA
1 TGACCGTAATGCCCCTGTAGGGTAAAA
* * * * *
63185262 AGACCATAATGCCTCTGTAAGGTAGAA
1 TGACCGTAATGCCCCTGTAGGGTAAAA
* *
63185289 TGACCGTAATGTCCCTATAGGGTAAAA
1 TGACCGTAATGCCCCTGTAGGGTAAAA
* **
63185316 CGAGTGTAATGCCCCTGTAGGGTAAAA
1 TGACCGTAATGCCCCTGTAGGGTAAAA
63185343 TGAC
1 TGAC
63185347 GATTATGCCC
Statistics
Matches: 160, Mismatches: 33, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 160 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (27 bp):
TGACCGTAATGCCCCTGTAGGGTAAAA
Found at i:63185539 original size:27 final size:26
Alignment explanation
Indices: 63185482--63185572 Score: 76
Period size: 27 Copynumber: 3.5 Consensus size: 26
63185472 ATGGAGGAAG
* * *
63185482 TACTG-TACTGGTGACTATGTCTCAT
1 TACTGTTACTGGTGGCTATGCCACAT
63185507 TCACTGTTACTGGTGGCTATGCCACAAT
1 T-ACTGTTACTGGTGGCTATGCCAC-AT
* ** *
63185535 TACTGTTTCTGGCAGCTATGCTACAT
1 TACTGTTACTGGTGGCTATGCCACAT
* *
63185561 TATTATTACTGG
1 TACTGTTACTGG
63185573 AAACTTTGCT
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
25 1 0.02
26 15 0.28
27 34 0.64
28 3 0.06
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (26 bp):
TACTGTTACTGGTGGCTATGCCACAT
Found at i:63195475 original size:20 final size:20
Alignment explanation
Indices: 63195450--63195496 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
63195440 GTGTGGACTC
63195450 ACACGCCCGTGTGACTTAGG
1 ACACGCCCGTGTGACTTAGG
63195470 ACACGCCCGTGTGACTTAGG
1 ACACGCCCGTGTGACTTAGG
63195490 ACACGCC
1 ACACGCC
63195497 TACGGCATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.21, C:0.34, G:0.28, T:0.17
Consensus pattern (20 bp):
ACACGCCCGTGTGACTTAGG
Found at i:63199536 original size:23 final size:23
Alignment explanation
Indices: 63199505--63199549 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
63199495 TATGAGTAAG
63199505 GTGTCTAATTGGAAAATAAGGAA
1 GTGTCTAATTGGAAAATAAGGAA
*
63199528 GTGTTTAATTGGAAAATAAGGA
1 GTGTCTAATTGGAAAATAAGGA
63199550 CCAAATTGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.42, C:0.02, G:0.27, T:0.29
Consensus pattern (23 bp):
GTGTCTAATTGGAAAATAAGGAA
Found at i:63202153 original size:21 final size:21
Alignment explanation
Indices: 63202127--63202170 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
63202117 GTAACGTCCC
63202127 GTACCCGAGACCGTTACCGGA
1 GTACCCGAGACCGTTACCGGA
63202148 GTACCCGAGACCGTTACCGGA
1 GTACCCGAGACCGTTACCGGA
63202169 GT
1 GT
63202171 CGGACACGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.32, G:0.30, T:0.16
Consensus pattern (21 bp):
GTACCCGAGACCGTTACCGGA
Found at i:63204038 original size:22 final size:22
Alignment explanation
Indices: 63204010--63204131 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
63204000 TTCCACATCC
63204010 ATCACATTGGCCATTCGACCTT
1 ATCACATTGGCCATTCGACCTT
** * *
63204032 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGACCTT
*
63204056 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
* * *
63204079 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGACCTT
*
63204103 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
63204126 ATCACA
1 ATCACA
63204132 CATACACATG
Statistics
Matches: 71, Mismatches: 17, Indels: 24
0.63 0.15 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 13 0.18
25 20 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:63204285 original size:49 final size:47
Alignment explanation
Indices: 63203982--63204580 Score: 848
Period size: 47 Copynumber: 12.6 Consensus size: 47
63203972 CCCTTCGGGA
* * * *
63203982 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
63204029 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
63204076 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
63204123 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
63204170 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
63204217 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGG--CCATTCGGC
* *
63204266 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
63204313 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
63204362 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
63204409 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
63204458 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
63204505 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
63204554 CTTATCACAAATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
63204581 TATTCAAATA
Statistics
Matches: 518, Mismatches: 24, Indels: 20
0.92 0.04 0.04
Matches are distributed among these distances:
46 1 0.00
47 337 0.65
49 179 0.35
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:63204316 original size:96 final size:95
Alignment explanation
Indices: 63203982--63204580 Score: 854
Period size: 96 Copynumber: 6.3 Consensus size: 95
63203972 CCCTTCGGGA
* * * *
63203982 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGACCTTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATACA
63204046 CTTTCACATTCATCACATTGGCCATTCGGC
66 CTTTCACATTCATCACATTGGCCATTCGGC
* * * *
63204076 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ACATACAC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATAC
63204139 A-TGTTCACATTCATCACATTGGCCATTCGGC
65 ACT-TTCACATTCATCACATTGGCCATTCGGC
* * * *
63204170 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTC-ATATATGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATAC
63204233 A-TGTTCACATTCATCACATTGGCCCCATTCGGC
65 ACT-TTCACATTCATCACATTGG--CCATTCGGC
* *
63204266 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATATATA
63204330 CACTTTCACATTCATCACATTGGCCATTCGGC
64 CACTTTCACATTCATCACATTGGCCATTCGGC
* *
63204362 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATATATAC
* *
63204427 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATTGGCCATTCGGC
* *
63204458 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATATATAC
*
63204523 ACTTTCACATTCATCACATTGGCCATTAGGC
65 ACTTTCACATTCATCACATTGGCCATTCGGC
*
63204554 CTTATCACAAATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
63204581 TATTCAAATA
Statistics
Matches: 471, Mismatches: 26, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
93 2 0.00
94 159 0.34
96 281 0.60
97 1 0.00
98 27 0.06
99 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATACA
CTTTCACATTCATCACATTGGCCATTCGGC
Found at i:63205974 original size:85 final size:85
Alignment explanation
Indices: 63205845--63206023 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
63205835 TATTTTATTG
*
63205845 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
63205910 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
63205930 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
63205995 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
63206015 CCCATGCTC
1 CCCATGCTC
63206024 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:63207320 original size:40 final size:40
Alignment explanation
Indices: 63207263--63207543 Score: 395
Period size: 40 Copynumber: 7.0 Consensus size: 40
63207253 CGAATACACG
* * * * *
63207263 TCACCAGCATGATTGCTCTTCGGGACCTAGCCTGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * * * *
63207303 ACACCAGCACGAATGCTCTTCGAGG-TTTATCACGGATATA
1 TCACTAGCATGAATGCTCTTCG-GGACTTAGCCCGGATACA
* *
63207343 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
63207383 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
63207423 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
63207463 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
63207503 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
63207542 TC
1 TC
63207544 GTCGAGACCT
Statistics
Matches: 218, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 5 0.02
40 211 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:63207639 original size:38 final size:38
Alignment explanation
Indices: 63207597--63207671 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
63207587 GAATTTTAAT
*
63207597 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* * *
63207635 CCGGACATAATGTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
63207672 AACTCGGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.03
38 31 0.97
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:63209790 original size:37 final size:37
Alignment explanation
Indices: 63209749--63209819 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
63209739 ATCGTACTTT
*
63209749 ATTATACAAACATACGATTACCAATTAGATCATTTTC
1 ATTATACAAACATACCATTACCAATTAGATCATTTTC
63209786 ATTATACAAACATACCATTACCAATTAGATCATT
1 ATTATACAAACATACCATTACCAATTAGATCATT
63209820 CTCACATTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.42, C:0.20, G:0.04, T:0.34
Consensus pattern (37 bp):
ATTATACAAACATACCATTACCAATTAGATCATTTTC
Found at i:63210198 original size:47 final size:47
Alignment explanation
Indices: 63210135--63210590 Score: 664
Period size: 47 Copynumber: 9.6 Consensus size: 47
63210125 CCCTTCGGGA
* * *
63210135 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
63210182 CTTATCACATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
63210229 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
63210276 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
63210323 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
63210372 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
63210419 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
63210468 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
63210515 CTTATCACATATATATACAATTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
63210564 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
63210591 TATTCAAATA
Statistics
Matches: 379, Mismatches: 22, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
46 1 0.00
47 244 0.64
49 133 0.35
50 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:63210369 original size:96 final size:96
Alignment explanation
Indices: 63210135--63210590 Score: 699
Period size: 96 Copynumber: 4.8 Consensus size: 96
63210125 CCCTTCGGGA
* *
63210135 CTTATCACAT-T-TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* * *
63210198 ACTTTCACATTCATCACATTGGTCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
63210229 CTTATCTC--ATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
* *
63210291 CA-TGTTCACATTCATCACATTGGCCATTCGGC
65 CACT-TTCACATTCATCACATCGGCCATTAGGC
*
63210323 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
63210388 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63210419 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
63210484 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
63210515 CTTATCACATATATATACAATTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
63210580 ACTTTCACATT
66 ACTTTCACATT
63210591 TATTCAAATA
Statistics
Matches: 333, Mismatches: 21, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
93 3 0.01
94 87 0.26
96 241 0.72
97 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63210395 original size:143 final size:140
Alignment explanation
Indices: 63210135--63210590 Score: 680
Period size: 143 Copynumber: 3.2 Consensus size: 140
63210125 CCCTTCGGGA
* * *
63210135 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
63210200 TTTCACATTCATCACATTGGTCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATT
66 TTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATACAT-TTCACATTCATCACATT
*
63210265 GGCCATTCGGC
130 GGCCATTAGGC
* *
63210276 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATA
63210340 CACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATACACTTTCACATTCATCAC
63 CACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATACA-TTTCACATTCATCAC
*
63210405 ATCGGCCATTAGGC
127 ATTGGCCATTAGGC
* * *
63210419 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* * *
63210484 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAATTTCACATTCATCA
64 ACTTTCACATTCATCACATTGGTCATTCGGCCTTATCAC--ATATATAC-ATTTCACATTCATCA
63210549 CATTGGCCATTAGGC
126 CATTGGCCATTAGGC
63210564 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
63210591 TATTCAAATA
Statistics
Matches: 287, Mismatches: 18, Indels: 18
0.89 0.06 0.06
Matches are distributed among these distances:
140 1 0.00
141 48 0.17
143 151 0.53
144 1 0.00
145 84 0.29
146 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (140 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATACATTTCACATTCATCACATTG
GCCATTAGGC
Found at i:63211984 original size:85 final size:85
Alignment explanation
Indices: 63211855--63212033 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
63211845 TATTTTATTG
* *
63211855 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTC
63211920 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
63211940 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTC
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTC
63212005 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
63212025 CCCATGCTC
1 CCCATGCTC
63212034 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTC
TAGCCATAACATCTTGTCCA
Found at i:63221996 original size:27 final size:27
Alignment explanation
Indices: 63221955--63222116 Score: 234
Period size: 27 Copynumber: 6.0 Consensus size: 27
63221945 CGTTATCTGG
63221955 CCGTAATGCCCCTATAGGGTAAAATGA
1 CCGTAATGCCCCTATAGGGTAAAATGA
* *
63221982 CCATAATGCCCCTATAGGGTAAAATCA
1 CCGTAATGCCCCTATAGGGTAAAATGA
*
63222009 CCGTAATGCCCTTATAGGGTAAAATGA
1 CCGTAATGCCCCTATAGGGTAAAATGA
* * *
63222036 CCGTAATGCCCCTGTAAGGTAGAATGA
1 CCGTAATGCCCCTATAGGGTAAAATGA
* *
63222063 CCGTAATGTCCCTGTAGGGTAAAATGA
1 CCGTAATGCCCCTATAGGGTAAAATGA
* *
63222090 CTGTAATTCCCCTATAGGGTAAAATGA
1 CCGTAATGCCCCTATAGGGTAAAATGA
63222117 TGATTATGCC
Statistics
Matches: 119, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 119 1.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.25
Consensus pattern (27 bp):
CCGTAATGCCCCTATAGGGTAAAATGA
Found at i:63222289 original size:27 final size:26
Alignment explanation
Indices: 63222248--63222356 Score: 85
Period size: 27 Copynumber: 4.1 Consensus size: 26
63222238 TTGATATGGA
* *
63222248 GGTGACTATGTCACATTCACTATTACT
1 GGTGGCTATGCCACATT-ACTATTACT
63222275 GGTGGCTATGCCACAATTACTGA-TACT
1 GGTGGCTATGCCAC-ATTACT-ATTACT
* * * *
63222302 AGTGGCTTTGCCACATTTACTGTTTCT
1 GGTGGCTATGCCACA-TTACTATTACT
** * *
63222329 GGCAGCTATGCTACATTATTATTACT
1 GGTGGCTATGCCACATTACTATTACT
63222355 GG
1 GG
63222357 CAGCTTTGCT
Statistics
Matches: 64, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
26 11 0.17
27 49 0.77
28 4 0.06
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (26 bp):
GGTGGCTATGCCACATTACTATTACT
Found at i:63233930 original size:51 final size:51
Alignment explanation
Indices: 63233867--63233965 Score: 180
Period size: 51 Copynumber: 1.9 Consensus size: 51
63233857 TGCCTTTGCG
*
63233867 ACCAAATCTGAGTATTTTCTTCCACGGTGAGACTTTCAAAAAGATTTTATC
1 ACCAAATATGAGTATTTTCTTCCACGGTGAGACTTTCAAAAAGATTTTATC
*
63233918 ACCAAATATGAGTATTTTCTTCCATGGTGAGACTTTCAAAAAGATTTT
1 ACCAAATATGAGTATTTTCTTCCACGGTGAGACTTTCAAAAAGATTTT
63233966 TTTCTCCGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.36
Consensus pattern (51 bp):
ACCAAATATGAGTATTTTCTTCCACGGTGAGACTTTCAAAAAGATTTTATC
Found at i:63235159 original size:33 final size:33
Alignment explanation
Indices: 63235117--63235180 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 33
63235107 TCTCGGATGA
63235117 TAGTCAATTATAAACT-AGTAGTCTTTTAGCAGT
1 TAGTCAATTATAAACTCA-TAGTCTTTTAGCAGT
*
63235150 TAGTCAATTATAAGCTCATAGTCTTTTAGCA
1 TAGTCAATTATAAACTCATAGTCTTTTAGCA
63235181 ATTCTAACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (33 bp):
TAGTCAATTATAAACTCATAGTCTTTTAGCAGT
Found at i:63240696 original size:40 final size:39
Alignment explanation
Indices: 63240506--63240689 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
63240496 CGAATGATGT
* * * *
63240506 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
63240546 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
63240586 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
63240624 TCTGGGTTAAGTCCCGAAGGCATTTCTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63240665 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63240690 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63240711 original size:79 final size:79
Alignment explanation
Indices: 63240558--63240722 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
63240548 GGACTAAGAT
* * **
63240558 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTCTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
* *
63240623 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* *
63240637 CCGAAGGCATTTCTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTCTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
63240700 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
63240716 CCGAAGG
1 CCGAAGG
63240723 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTCTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:63244523 original size:12 final size:12
Alignment explanation
Indices: 63244506--63244538 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
63244496 TTGTAGATTC
*
63244506 AAAAAAAATCGA
1 AAAAAAAATCAA
63244518 AAAAAAAATCAA
1 AAAAAAAATCAA
63244530 AAAAAAAAT
1 AAAAAAAAT
63244539 ATTTTGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.82, C:0.06, G:0.03, T:0.09
Consensus pattern (12 bp):
AAAAAAAATCAA
Found at i:63246802 original size:17 final size:18
Alignment explanation
Indices: 63246763--63246804 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
63246753 AAGAAGAAAA
63246763 ACAAAA-AGATGAGTGAT
1 ACAAAAGAGATGAGTGAT
*
63246780 AAAAAAGAGA-GAGTGAT
1 ACAAAAGAGATGAGTGAT
*
63246797 TCAAAAGA
1 ACAAAAGA
63246805 AAAAGAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.57, C:0.05, G:0.24, T:0.14
Consensus pattern (18 bp):
ACAAAAGAGATGAGTGAT
Found at i:63255362 original size:23 final size:23
Alignment explanation
Indices: 63255326--63255369 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
63255316 TAAAGAAATG
63255326 GAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAGAGAAA-AAAATGAT
*
63255350 GAAAACAAA-AGAAAAAAATG
1 GAAAAAAAAGAGAAAAAAATG
63255370 TGTCCATCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 5 0.26
24 8 0.42
ACGTcount: A:0.73, C:0.02, G:0.18, T:0.07
Consensus pattern (23 bp):
GAAAAAAAAGAGAAAAAAATGAT
Found at i:63256803 original size:40 final size:39
Alignment explanation
Indices: 63256616--63256796 Score: 179
Period size: 40 Copynumber: 4.6 Consensus size: 39
63256606 ATGATGTCCA
* * * *
63256616 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AACCG
* *
63256656 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-ACCG
*
63256696 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA-CCG
* * *
63256735 GGTTAAGTCCCGAAGGTATTTCTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AACCG
* *
63256775 AGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
63256797 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 35 0.30
40 73 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAACCG
Found at i:63256818 original size:79 final size:79
Alignment explanation
Indices: 63256665--63256831 Score: 178
Period size: 79 Copynumber: 2.1 Consensus size: 79
63256655 GGACTAAGAT
* * * * **
63256665 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGTATTTCTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
63256730 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
63256744 CCGAAGGTATTTCTGCGAGTTACT-ATAACCGAGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGTATTTCTGCGAGTTACTAAT-ACCGAGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* * *
63256807 TATATTC-GGTTAAATT
63 TAAATCCGGGTTAAATC
63256823 CCGAAGGTA
1 CCGAAGGTA
63256832 CGTGATTCGG
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
CCGAAGGTATTTCTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:63263210 original size:28 final size:28
Alignment explanation
Indices: 63263139--63263212 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
63263129 ATTGCATGAC
* *
63263139 TATGAGTGTGATTGGACCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGACGGGCCA
* * * *
63263167 TATGAAAGTGATTGGGCTTGATGGGTCA
1 TATGAATGTGATTGGGCCTGACGGGCCA
63263195 TATGAATGTGATTGGGCC
1 TATGAATGTGATTGGGCC
63263213 CAATGGGCCA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.23, C:0.12, G:0.35, T:0.30
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGACGGGCCA
Found at i:63263218 original size:28 final size:28
Alignment explanation
Indices: 63263161--63263225 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
63263151 TGGACCTGAC
***
63263161 GGGCCATATGAAAGTGATTGGGCTTGAT
1 GGGCCATATGAAAGTGATTGGGCCCAAT
* *
63263189 GGGTCATATGAATGTGATTGGGCCCAAT
1 GGGCCATATGAAAGTGATTGGGCCCAAT
63263217 GGGCCATAT
1 GGGCCATAT
63263226 AAATCAGATG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.25, C:0.14, G:0.34, T:0.28
Consensus pattern (28 bp):
GGGCCATATGAAAGTGATTGGGCCCAAT
Found at i:63270919 original size:28 final size:28
Alignment explanation
Indices: 63270878--63270974 Score: 124
Period size: 28 Copynumber: 3.5 Consensus size: 28
63270868 TGACTAAGAG
* * *
63270878 TGTGACTGGGCCTGACGGGCCATATCAA
1 TGTGATTGGGCCTGATGGGCCATATGAA
* *
63270906 AGTGATTGGGCCTGATGGGCCATATGTA
1 TGTGATTGGGCCTGATGGGCCATATGAA
63270934 TGTGATTGGG-CTCGATGGGCCATATGAA
1 TGTGATTGGGCCT-GATGGGCCATATGAA
*
63270962 TGAGATTGGGCCT
1 TGTGATTGGGCCT
63270975 AAAGAGGCCA
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
27 2 0.03
28 55 0.93
29 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.35, T:0.27
Consensus pattern (28 bp):
TGTGATTGGGCCTGATGGGCCATATGAA
Found at i:63272226 original size:17 final size:18
Alignment explanation
Indices: 63272193--63272226 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63272183 TTCAAAGAAG
63272193 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
63272211 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
63272227 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:63283724 original size:18 final size:19
Alignment explanation
Indices: 63283680--63283726 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
63283670 AAAGGTTAGT
**
63283680 AATGTAAATTGTTAAATAA
1 AATGTAAATTAATAAATAA
63283699 AA-GATAAATTAATAAA-AA
1 AATG-TAAATTAATAAATAA
63283717 AATGTAAATT
1 AATGTAAATT
63283727 TTCTTCATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.32
Consensus pattern (19 bp):
AATGTAAATTAATAAATAA
Found at i:63289970 original size:29 final size:30
Alignment explanation
Indices: 63289918--63290021 Score: 101
Period size: 29 Copynumber: 3.6 Consensus size: 30
63289908 ATATAGCCTA
* ** *
63289918 CTAGGCCCAA-TCTTATTCAAATGGCTCAT
1 CTAGGCCCAATTCATATTCTTATGGCCCAT
63289947 CT-GGCCCAATTCATATTCTTATGGCCCA-
1 CTAGGCCCAATTCATATTCTTATGGCCCAT
* *
63289975 CTATGCCCAATTCACATT-TGTATGGCCCAT
1 CTAGGCCCAATTCATATTCT-TATGGCCCAT
*
63290005 -TAGGCCCAAATCATATT
1 CTAGGCCCAATTCATATT
63290022 ATATTCATGC
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
28 10 0.16
29 52 0.84
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (30 bp):
CTAGGCCCAATTCATATTCTTATGGCCCAT
Found at i:63290127 original size:19 final size:19
Alignment explanation
Indices: 63290103--63290140 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
63290093 CAGCCCATCA
*
63290103 GGCCCATTTAGCCCATTTT
1 GGCCCATTTAGCCAATTTT
*
63290122 GGCCCATTTGGCCAATTTT
1 GGCCCATTTAGCCAATTTT
63290141 CAACCCAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.29, G:0.18, T:0.37
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTTT
Found at i:63293361 original size:19 final size:20
Alignment explanation
Indices: 63293337--63293374 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
63293327 GGTACCACCA
63293337 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
63293356 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
63293375 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:63293715 original size:93 final size:93
Alignment explanation
Indices: 63293604--63293774 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
63293594 GCCCCTAAGT
* ***
63293604 GAACTCAGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
63293669 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * *
63293697 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
63293762 CGAGTTCAGATGC
66 CGAGTTCAGATGC
63293775 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:63293764 original size:46 final size:46
Alignment explanation
Indices: 63293599--63293768 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 46
63293589 AACCAGCCCC
* * *** *
63293599 TAAGTGAACTCAGACTCAACTCAATGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
63293645 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
63293693 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
63293738 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCAGACTCAACTCAACGAGTTC
63293769 AGATGCTCAA
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 54 0.55
47 28 0.28
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:63294228 original size:30 final size:30
Alignment explanation
Indices: 63294194--63294253 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
63294184 ATTTAATATG
63294194 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
63294224 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
63294254 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:63297747 original size:79 final size:81
Alignment explanation
Indices: 63297644--63297829 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
63297634 GCTACTCGTT
* *
63297644 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
63297707 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* ** *
63297724 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCTGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
63297788 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
63297804 CAAA-GCCTTCGGGACTTAGCCCGGAA
1 CAAATGCCTTCGGGACTTAGCCCGGAA
63297830 ATCATTCAAA
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 35 0.38
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:63297761 original size:39 final size:40
Alignment explanation
Indices: 63297644--63297828 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
63297634 GCTACTCGTT
*
63297644 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
63297684 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
63297724 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
63297763 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
63297804 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63297829 AATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:63309284 original size:119 final size:120
Alignment explanation
Indices: 63309100--63309324 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
63309090 GCTCCTCGTT
*
63309100 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
63309165 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
63309220 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
63309282 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
63309325 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 66 0.72
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:63309324 original size:40 final size:40
Alignment explanation
Indices: 63309100--63309324 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
63309090 GCTCCTCGTT
* *
63309100 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
63309140 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
63309180 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
63309220 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
63309259 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
63309300 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63309325 CATCATTCAA
Statistics
Matches: 166, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 120 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:63311626 original size:40 final size:40
Alignment explanation
Indices: 63311573--63311762 Score: 237
Period size: 40 Copynumber: 4.8 Consensus size: 40
63311563 GGATATAGCT
* * *
63311573 ACTCGCTCGAATGCCTTTGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
** *
63311613 GTTCGCACAAATGCCTTCGGAACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
63311653 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
63311693 ACTCGCA-ACAATGCCTTCGGGACCTAG-CCGGAATTA-TC
1 ACTCGCACA-AATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
63311731 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
63311763 TTATCATCCG
Statistics
Matches: 133, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
38 24 0.18
39 15 0.11
40 92 0.69
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:63316932 original size:26 final size:26
Alignment explanation
Indices: 63316903--63316952 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
63316893 GCAAATGATG
*
63316903 TGAATGAATGAACACCAATGGGCAGA
1 TGAATGAATAAACACCAATGGGCAGA
*
63316929 TGAATGAATAAACTCCAATGGGCA
1 TGAATGAATAAACACCAATGGGCA
63316953 TACAATGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.18
Consensus pattern (26 bp):
TGAATGAATAAACACCAATGGGCAGA
Found at i:63319138 original size:45 final size:46
Alignment explanation
Indices: 63318975--63319149 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
63318965 TGGTTGAGCA
*
63318975 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
63319021 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
63319066 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
63319114 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63319150 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:63326701 original size:45 final size:46
Alignment explanation
Indices: 63326538--63326712 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
63326528 ATGTTGAGCA
*
63326538 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
63326584 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
63326629 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
63326677 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63326713 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:63331950 original size:27 final size:26
Alignment explanation
Indices: 63331912--63331993 Score: 110
Period size: 27 Copynumber: 3.1 Consensus size: 26
63331902 GGAGTATACC
63331912 GGTGGCTCTGCCACAAATATCTGTTCT
1 GGTGGCTCTGCCAC-AATATCTGTTCT
* *
63331939 GGTGGCTTTGCCACAATATCTATATCT
1 GGTGGCTCTGCCACAATATCTGT-TCT
* *
63331966 GGTGACTCTGTCACAATATCTGTTCT
1 GGTGGCTCTGCCACAATATCTGTTCT
63331992 GG
1 GG
63331994 CAGCCATGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 13 0.27
27 35 0.73
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (26 bp):
GGTGGCTCTGCCACAATATCTGTTCT
Found at i:63335937 original size:48 final size:48
Alignment explanation
Indices: 63335866--63336251 Score: 655
Period size: 48 Copynumber: 8.0 Consensus size: 48
63335856 CAAGATAAAT
* *
63335866 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
63335914 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
63335962 ATATGTATATGTGGTAAAGACGAATGGCTAATATGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
63336010 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
63336058 GTATGTATATGTGTTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
63336106 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
63336154 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
63336202 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
63336250 AT
1 AT
63336252 GTGTGTATAT
Statistics
Matches: 317, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 317 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:63336442 original size:37 final size:37
Alignment explanation
Indices: 63336392--63336494 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
63336382 GGAAATATAT
63336392 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
63336429 TCCGGGTAAGACCCGATGACTACGTGTGGAGGTTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
63336466 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
63336495 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:63344214 original size:48 final size:48
Alignment explanation
Indices: 63344138--63344235 Score: 151
Period size: 48 Copynumber: 2.0 Consensus size: 48
63344128 TAGGGTTACG
* ***
63344138 TGTGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGAACATACATGGGACATGGCATTGGCATCGATA
*
63344186 TGTGATCCCATGTAAGAACATACATGGGATATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGAACATACATGGGACATGGCATTGGCATCGATA
63344234 TG
1 TG
63344236 AGACATCATG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGAACATACATGGGACATGGCATTGGCATCGATA
Found at i:63346055 original size:27 final size:27
Alignment explanation
Indices: 63346019--63346100 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 27
63346009 GTAAGGGCGG
* *
63346019 TCCTTA-AGAGTGTGCCACGAAGGCAT
1 TCCTTACAGAGTTTGCCACAAAGGCAT
***
63346045 TCCTTACAGAGTTTGCCACAAATTAAT
1 TCCTTACAGAGTTTGCCACAAAGGCAT
*
63346072 TCCTTACAAAGTTTGCCACAAAGGCAT
1 TCCTTACAGAGTTTGCCACAAAGGCAT
63346099 TC
1 TC
63346101 GTTCATGTTA
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 6 0.13
27 40 0.87
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (27 bp):
TCCTTACAGAGTTTGCCACAAAGGCAT
Found at i:63348091 original size:46 final size:46
Alignment explanation
Indices: 63347927--63348097 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
63347917 GGTTGAGCAT
*
63347927 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
63347972 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
63348017 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
63348065 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63348098 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
44 3 0.03
45 27 0.26
46 32 0.31
47 27 0.26
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:63352546 original size:26 final size:26
Alignment explanation
Indices: 63352508--63352558 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
63352498 GGGGTAAAAT
63352508 GAATATAGCAAGGAGAAACCATGGCC
1 GAATATAGCAAGGAGAAACCATGGCC
*
63352534 GAATATAGTAAGGAGAAACCATGGC
1 GAATATAGCAAGGAGAAACCATGGC
63352559 TAGGGTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.43, C:0.16, G:0.27, T:0.14
Consensus pattern (26 bp):
GAATATAGCAAGGAGAAACCATGGCC
Found at i:63353470 original size:46 final size:46
Alignment explanation
Indices: 63353417--63353589 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
63353407 TGGTTGAGCA
63353417 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
63353463 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
63353508 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
63353556 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63353590 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63353573 original size:93 final size:93
Alignment explanation
Indices: 63353414--63353584 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
63353404 AGATGGTTGA
* *
63353414 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
63353479 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
63353507 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63353572 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63353585 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:63359511 original size:26 final size:26
Alignment explanation
Indices: 63359478--63359529 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
63359468 TGAAAGGTGT
63359478 GTTTATTTATTTTTATTTAATTAAGG
1 GTTTATTTATTTTTATTTAATTAAGG
63359504 GTTTATTTATTTTTATTTAATTAAGG
1 GTTTATTTATTTTTATTTAATTAAGG
63359530 TTTCTTTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.62
Consensus pattern (26 bp):
GTTTATTTATTTTTATTTAATTAAGG
Found at i:63363719 original size:40 final size:41
Alignment explanation
Indices: 63363660--63363811 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
63363650 CATTTGAATG
* * *
63363660 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
63363700 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
63363740 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
63363780 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
63363812 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:63363823 original size:80 final size:80
Alignment explanation
Indices: 63363660--63363831 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
63363650 CATTTGAATG
* * * * *
63363660 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
63363725 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
63363740 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
63363804 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
63363820 ATATCC-GGCTAA
1 ATATCCGGGCTAA
63363832 ATTCTGAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 71 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:63365314 original size:43 final size:43
Alignment explanation
Indices: 63365258--63365396 Score: 224
Period size: 43 Copynumber: 3.2 Consensus size: 43
63365248 TCGGCATCTT
63365258 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGA
* *
63365301 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAACATGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGA
* * * *
63365344 AGCCTGCTAGGTACAAAGGCCCGAATACACATCATCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGA
63365387 AGCCTGCTAG
1 AGCCTGCTAG
63365397 ATTTAACCTG
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 88 1.00
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.12
Consensus pattern (43 bp):
AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGA
Found at i:63371526 original size:14 final size:12
Alignment explanation
Indices: 63371504--63371537 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
63371494 GTCTTAAAAT
63371504 AAAATAAAAGTAA
1 AAAATAAAA-TAA
63371517 AAACATAAAATAA
1 AAA-ATAAAATAA
63371530 AAAATAAA
1 AAAATAAA
63371538 TTTTTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 9 0.45
14 6 0.30
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:63375502 original size:28 final size:28
Alignment explanation
Indices: 63375439--63375592 Score: 238
Period size: 28 Copynumber: 5.5 Consensus size: 28
63375429 ATATTAAGTC
* *
63375439 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
63375466 TGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
63375494 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
63375522 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
63375550 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
63375578 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63375593 GTACAATTTA
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
27 20 0.17
28 99 0.83
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:63375583 original size:84 final size:84
Alignment explanation
Indices: 63375438--63375617 Score: 263
Period size: 84 Copynumber: 2.1 Consensus size: 84
63375428 TATATTAAGT
* * * *
63375438 CCGCACACTCAGTGCTATATAATCAACTTGCACACTTAGTGCTACATAATCAAACTTGCACACTT
1 CCGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
*
63375503 AGTGCTATATAA-TCAAAC
66 AGTGCTATACAATTCAAAC
* *
63375521 TCGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCTACATAATCAAGCTCGCACACT
1 CCGCACACTTAGTGCTACATAATCAA-CTCGCACACTTAGTGCTACATAATCAAACTCGCACACT
* *
63375586 TAGTGCTGTACAATTTAAAC
65 TAGTGCTATACAATTCAAAC
63375606 CCGCACACTTAG
1 CCGCACACTTAG
63375618 CGCCAATCTC
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
83 23 0.27
84 46 0.54
85 16 0.19
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.27
Consensus pattern (84 bp):
CCGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
AGTGCTATACAATTCAAAC
Found at i:63383697 original size:28 final size:29
Alignment explanation
Indices: 63383649--63383719 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 29
63383639 AAAACTTAAC
63383649 GTGCTAT-ATAATCAAACTTCGC-CACTTA
1 GTGCTATCATAATCAAACTTCGCACAC-TA
63383677 GTGCTATCATAATCAAA-TTCGCACACTA
1 GTGCTATCATAATCAAACTTCGCACACTA
63383705 GTGCTA-CATAATCAA
1 GTGCTATCATAATCAA
63383720 GCNNNNNNNN
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
27 9 0.22
28 20 0.49
29 12 0.29
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (29 bp):
GTGCTATCATAATCAAACTTCGCACACTA
Found at i:63436023 original size:40 final size:40
Alignment explanation
Indices: 63435978--63436169 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
63435968 ATAACCACAA
* * *
63435978 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
63436018 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
63436058 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
63436098 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
63436138 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
63436170 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:63436062 original size:80 final size:80
Alignment explanation
Indices: 63435949--63436168 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
63435939 ACCCAAGTTT
* * * * * * * * *
63435949 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
63436012 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
63436028 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
63436092 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
63436108 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
63436169 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:63458505 original size:19 final size:18
Alignment explanation
Indices: 63458468--63458511 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
63458458 ATACAGACAG
63458468 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
63458485 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
63458504 TACTAATT
1 TAATAATT
63458512 AAAATTTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:63464775 original size:48 final size:48
Alignment explanation
Indices: 63464701--63464974 Score: 250
Period size: 48 Copynumber: 5.7 Consensus size: 48
63464691 CCGTGCTAAA
* * *
63464701 TGTGCCTGTGTAAGACCATGTCTGGGACATGGGAACGGCGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCAACAGCGATGATATG
* * * * ** * *
63464749 TGTGGCTGTGTAAGACCATATTTGGGACATGGC-ATTGACGATGACACG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCAACAG-CGATGATATG
* * * * *
63464797 TTTGCAAGTGGAAGACCATGCCTGGGACATGGCATCAGCGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCAACAGCGATGATATG
* * *
63464845 TGAGCCAGTGTAAGACCATGTCTGGGACATGG-AATTAGCAATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCAA-CAGCGATGATATG
* * * * *
63464893 TGTGCCAGTGTAAGACCATGTCTAGGATATGGCATCGGGGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCAACAGCGATGATATG
* *
63464941 TG-GATTCA-TGTAAGACCATGTCAGGGACATGGCA
1 TGTG--CCAGTGTAAGACCATGTCTGGGACATGGCA
63464975 TTGGCACTTT
Statistics
Matches: 179, Mismatches: 41, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
47 4 0.02
48 171 0.96
49 4 0.02
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (48 bp):
TGTGCCAGTGTAAGACCATGTCTGGGACATGGCAACAGCGATGATATG
Found at i:63464876 original size:96 final size:97
Alignment explanation
Indices: 63464712--63464977 Score: 304
Period size: 96 Copynumber: 2.8 Consensus size: 97
63464702 GTGCCTGTGT
* * * * * * *
63464712 AAGACCATGTCTGGGACATGGGAACGGCGATGATATGTGTGGCTGTGTAAGACCATATTTGGGAC
1 AAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGAGCCAGTGTAAGACCATGTCTGGGAC
* *
63464777 ATGGCATTGA-CGATGACACGTTTGCAAGTGG
66 ATGGCATTGAGCAATGACACGTGTGCAAGTGG
* *
63464808 AAGACCATGCCTGGGACATGGCATCAGCGATGATATGTGAGCCAGTGTAAGACCATGTCTGGGAC
1 AAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGAGCCAGTGTAAGACCATGTCTGGGAC
* * * * *
63464873 ATGGAATT-AGCAATGATATGTGTGCCAGTGT
66 ATGGCATTGAGCAATGACACGTGTGCAAGTGG
* * * ** *
63464904 AAGACCATGTCTAGGATATGGCATCGGGGATGATATGTGGATTCA-TGTAAGACCATGTCAGGGA
1 AAGACCATGTCTGGGACATGGCATCGGCGATGATATGT-GAGCCAGTGTAAGACCATGTCTGGGA
63464968 CATGGCATTG
65 CATGGCATTG
63464978 GCACTTTAAT
Statistics
Matches: 142, Mismatches: 25, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
95 1 0.01
96 137 0.96
97 4 0.03
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (97 bp):
AAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGAGCCAGTGTAAGACCATGTCTGGGAC
ATGGCATTGAGCAATGACACGTGTGCAAGTGG
Found at i:63468064 original size:28 final size:27
Alignment explanation
Indices: 63467983--63468069 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
63467973 AGCATGGCTG
* *
63467983 CCAG-AACAGATATTGTGACAGAGTCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
*
63468009 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
* *
63468036 CCATAAACAGATATTTGTGGCAGAACCA
1 CCAGAAACAGATA-TTGTGGCAGAGCCA
63468064 CCAGAA
1 CCAGAA
63468070 CGCTTCCTCC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
26 4 0.08
27 30 0.58
28 18 0.35
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (27 bp):
CCAGAAACAGATATTGTGGCAGAGCCA
Found at i:63468359 original size:19 final size:19
Alignment explanation
Indices: 63468335--63468387 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
63468325 TGGGTCCGTT
63468335 GGCCCATTAACCCATTTTC
1 GGCCCATTAACCCATTTTC
*
63468354 GGCCCATTAACCCGTTTTC
1 GGCCCATTAACCCATTTTC
**
63468373 AACCCATTAAGCCCA
1 GGCCCATTAA-CCCA
63468388 AATATACCAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 26 0.90
20 3 0.10
ACGTcount: A:0.25, C:0.38, G:0.11, T:0.26
Consensus pattern (19 bp):
GGCCCATTAACCCATTTTC
Found at i:63471025 original size:11 final size:11
Alignment explanation
Indices: 63471009--63471035 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
63470999 ACTTATATAT
63471009 TTATACCAAGA
1 TTATACCAAGA
63471020 TTATACCAAGA
1 TTATACCAAGA
63471031 TTATA
1 TTATA
63471036 GCTTAATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.33
Consensus pattern (11 bp):
TTATACCAAGA
Found at i:63480299 original size:55 final size:55
Alignment explanation
Indices: 63480213--63480317 Score: 147
Period size: 55 Copynumber: 1.9 Consensus size: 55
63480203 GCAACACTAA
*
63480213 CTTTAAAACACGGCCATGCCACACGCTCGTGTGGCCTACCCGTGTACAATGCTGG
1 CTTTAAAACACGACCATGCCACACGCTCGTGTGGCCTACCCGTGTACAATGCTGG
* * * * * *
63480268 CTTTTAAACACGATCATGGCACACGTTCGTGTGGCCTGCTCGTGTACAAT
1 CTTTAAAACACGACCATGCCACACGCTCGTGTGGCCTACCCGTGTACAAT
63480318 ACTGACCTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 43 1.00
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.26
Consensus pattern (55 bp):
CTTTAAAACACGACCATGCCACACGCTCGTGTGGCCTACCCGTGTACAATGCTGG
Found at i:63480573 original size:55 final size:55
Alignment explanation
Indices: 63480483--63480591 Score: 139
Period size: 55 Copynumber: 2.0 Consensus size: 55
63480473 GCAACACTAA
* *
63480483 CTTTAAAACATGGCCATGGCATATGCCCGTATGGCCTACCCGTGTACAATACTGG
1 CTTTAAAACATGGCCATGGCACACGCCCGTATGGCCTACCCGTGTACAATACTGG
* * * * *
63480538 CTTTTAAACAT-GCTCATGGCACACGCCCTTGTGGCCTGCTCGTGTACAATACTG
1 CTTTAAAACATGGC-CATGGCACACGCCCGTATGGCCTACCCGTGTACAATACTG
63480592 ACCTAAAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
54 2 0.04
55 44 0.96
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (55 bp):
CTTTAAAACATGGCCATGGCACACGCCCGTATGGCCTACCCGTGTACAATACTGG
Found at i:63480581 original size:270 final size:270
Alignment explanation
Indices: 63480100--63480633 Score: 899
Period size: 270 Copynumber: 2.0 Consensus size: 270
63480090 AAGAAAAACT
63480100 TGGAAAATTCATGCTTTAAGGCTCCACGAGCCCGTGTGGGTATAGACCGTGTGGTCGCACACGCC
1 TGGAAAATTCATGCTTTAAGGCTCCACGAGCCCGTGTGGGTATAGACCGTGTGGTCGCACACGCC
* **
63480165 CGTGTGGCTTCGGGCATGCCTGTGCCCTTAGTCTGTGTGCAACACTAACTTTAAAACACGGCCAT
66 CGTGTGGCTTCGGGCACGCCTGTGCCCTTAGTCCATGTGCAACACTAACTTTAAAACACGGCCAT
* * * **
63480230 GCCACACGCTCGTGTGGCCTACCCGTGTACAATGCTGGCTTTTAAACACGATCATGGCACACGTT
131 GCCACACGCCCGTATGGCCTACCCGTGTACAATACTGGCTTTTAAACACGATCATGGCACACGCC
63480295 CGTGTGGCCTGCTCGTGTACAATACTGACCTAAAATTTTAAGTACAGGGGACGCACGGCTATAAC
196 CGTGTGGCCTGCTCGTGTACAATACTGACCTAAAATTTTAAGTACAGGGGACGCACGGCTATAAC
63480360 ACACGCCTGC
261 ACACGCCTGC
*
63480370 TGGAAAATTCATGCTTTAAGGCTCCACGTGCCCGTGTGGGTATAGACCGTGTGGTCGCACACGCC
1 TGGAAAATTCATGCTTTAAGGCTCCACGAGCCCGTGTGGGTATAGACCGTGTGGTCGCACACGCC
*
63480435 CGTGTGGCTT-GGGACACGCCTGTGCCCTTAGTCCATGTGCAACACTAACTTTAAAACATGGCCA
66 CGTGTGGCTTCGGG-CACGCCTGTGCCCTTAGTCCATGTGCAACACTAACTTTAAAACACGGCCA
* * * * *
63480499 TGGCATATGCCCGTATGGCCTACCCGTGTACAATACTGGCTTTTAAACATGCTCATGGCACACGC
130 TGCCACACGCCCGTATGGCCTACCCGTGTACAATACTGGCTTTTAAACACGATCATGGCACACGC
* *
63480564 CCTTGTGGCCTGCTCGTGTACAATACTGACCTAAAATTTTAAGTATAGGGGACGCACGGCTATAA
195 CCGTGTGGCCTGCTCGTGTACAATACTGACCTAAAATTTTAAGTACAGGGGACGCACGGCTATAA
63480629 CACAC
260 CACAC
63480634 ACCCGTGAGA
Statistics
Matches: 246, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
269 3 0.01
270 243 0.99
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (270 bp):
TGGAAAATTCATGCTTTAAGGCTCCACGAGCCCGTGTGGGTATAGACCGTGTGGTCGCACACGCC
CGTGTGGCTTCGGGCACGCCTGTGCCCTTAGTCCATGTGCAACACTAACTTTAAAACACGGCCAT
GCCACACGCCCGTATGGCCTACCCGTGTACAATACTGGCTTTTAAACACGATCATGGCACACGCC
CGTGTGGCCTGCTCGTGTACAATACTGACCTAAAATTTTAAGTACAGGGGACGCACGGCTATAAC
ACACGCCTGC
Found at i:63487145 original size:43 final size:43
Alignment explanation
Indices: 63487007--63487181 Score: 176
Period size: 43 Copynumber: 4.1 Consensus size: 43
63486997 ACATAGGATT
63487007 TTGATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCA
1 TTGATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCA
* * * * *
63487050 TCGAT-TAGAGATTTACGTGTAAGACCATGTCTGGGACATCGGCA
1 TTGATAT-GTGATTT-CATGTAAGACCACGTCTGGGACATTGGCA
* * * * * *
63487094 TCG-TATTTGATTTCGTGTATGACC-CTGTTTGGGACAGTGGCA
1 TTGATATGTGATTTCATGTAAGACCAC-GTCTGGGACATTGGCA
* * *
63487136 TTGATATTTGATTACATGTAAGACCACGTTTGGGACATTGGCA
1 TTGATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCA
63487179 TTG
1 TTG
63487182 TACGAGCTTT
Statistics
Matches: 109, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
42 26 0.24
43 52 0.48
44 31 0.28
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
TTGATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCA
Found at i:63492711 original size:47 final size:47
Alignment explanation
Indices: 63492659--63493112 Score: 624
Period size: 47 Copynumber: 9.6 Consensus size: 47
63492649 GATAATTGTG
* *
63492659 ATGTGAATGTATATATATGTGATAAGGCCTAATTGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * *
63492706 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
63492753 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
63492802 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
63492849 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
63492898 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
63492945 ATGTGAAAGTGTATATATGTGA-AGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATA-AGGCCTAATGGCCGATGTGATGA
*
63492992 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
63493041 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
63493088 ATGTG-AAGTGTATAAATGTGATAAG
1 ATGTGAAAGTATATATATGTGATAAG
63493113 TCCCGAAGGG
Statistics
Matches: 366, Mismatches: 33, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
46 18 0.05
47 217 0.59
49 130 0.36
50 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:63492766 original size:96 final size:96
Alignment explanation
Indices: 63492659--63493112 Score: 683
Period size: 96 Copynumber: 4.8 Consensus size: 96
63492649 GATAATTGTG
*
63492659 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATTGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
63492722 ATGTGATAAGGCCGAAT-GACCAATGTGATGA
66 ATGTGATAAGGCCGAATAG-CCAATGTGATGA
63492753 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
63492818 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATAGCCAATGTGATGA
63492849 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
63492914 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCGAATAGCCAATGTGATGA
63492945 ATGTGAAAGTG--TATATATGTGA-AGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 ATGTGAAAGTGTATATATATGTGATA-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
* *
63493007 TATATGTGATAAGGCCTAATAGCCGATGTGATGA
63 TATATGTGATAAGGCCGAATAGCCAATGTGATGA
* * * * * * * *
63493041 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTG-AAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
63493103 ATGTGATAAG
66 ATGTGATAAG
63493113 TCCCGAAGGG
Statistics
Matches: 342, Mismatches: 11, Indels: 15
0.93 0.03 0.04
Matches are distributed among these distances:
93 15 0.04
94 50 0.15
95 7 0.02
96 268 0.78
97 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATAGCCAATGTGATGA
Found at i:63492808 original size:143 final size:142
Alignment explanation
Indices: 63492659--63493112 Score: 655
Period size: 143 Copynumber: 3.2 Consensus size: 142
63492649 GATAATTGTG
* *
63492659 ATGTGAATGTATATATATGTGATAAGGCCTAATTGCCGATGTGATGAATGTGAAAGTG-TATATA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
* *
63492723 TGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
63492788 GGCCGATGTGATGA
129 GGCCGATGTGATGA
* * *
63492802 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATAT
* *
63492867 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
65 ATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
63492932 GCCGATGTGATGA
130 GCCGATGTGATGA
*
63492945 ATGTGAAAGTGTATATATGTGA-AGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAGTATATATATGTGATA-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATA
* * * *
63493009 TATGTGATAAGGCCTAAT-AGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAG
64 TATGTGATAAGGCCTAATGA-CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* * *
63493073 TGGCCAACGTGATGG
128 TGGCCGATGTGATGA
* *
63493088 ATGTG-AAGTGTATAAATGTGATAAG
1 ATGTGAAAGTATATATATGTGATAAG
63493113 TCCCGAAGGG
Statistics
Matches: 285, Mismatches: 21, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
142 18 0.06
143 223 0.78
145 44 0.15
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (142 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
TGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGA
Found at i:63498702 original size:25 final size:25
Alignment explanation
Indices: 63498670--63498742 Score: 110
Period size: 25 Copynumber: 2.9 Consensus size: 25
63498660 CCTCTTTTAG
63498670 TAACTGGGGCAAAGCCCTTTTTGAT
1 TAACTGGGGCAAAGCCCTTTTTGAT
* *
63498695 TAACTGGGGCTAAGCCCTTTTCGAT
1 TAACTGGGGCAAAGCCCTTTTTGAT
* *
63498720 AAACTGGGGAAAAGCCCTTTTTG
1 TAACTGGGGCAAAGCCCTTTTTG
63498743 CACTTCCCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (25 bp):
TAACTGGGGCAAAGCCCTTTTTGAT
Found at i:63498824 original size:11 final size:10
Alignment explanation
Indices: 63498808--63498844 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
63498798 CATCTCATAA
63498808 CATATCATGT
1 CATATCATGT
63498818 GCATATCATGT
1 -CATATCATGT
63498829 CATATCATGT
1 CATATCATGT
63498839 -ATATCA
1 CATATCA
63498845 AAATCTCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:63498832 original size:21 final size:21
Alignment explanation
Indices: 63498774--63498838 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
63498764 ACCCAACCCA
* * *
63498774 TGCATATAATGAATATATCTTG
1 TGCATATCAT-AACATATCATG
*
63498796 TGCATCTCATAACATATCATG
1 TGCATATCATAACATATCATG
**
63498817 TGCATATCATGTCATATCATG
1 TGCATATCATAACATATCATG
63498838 T
1 T
63498839 ATATCAAAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
21 28 0.78
22 8 0.22
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.38
Consensus pattern (21 bp):
TGCATATCATAACATATCATG
Found at i:63506717 original size:25 final size:25
Alignment explanation
Indices: 63506684--63506756 Score: 101
Period size: 25 Copynumber: 2.9 Consensus size: 25
63506674 CCTCTTTTAG
*
63506684 TAACCGGGGCAAAGCCCTTTTTGAT
1 TAACTGGGGCAAAGCCCTTTTTGAT
* *
63506709 TAACTGGGGCAAAGCCCTTTTCGGT
1 TAACTGGGGCAAAGCCCTTTTTGAT
* *
63506734 AAACTAGGGCAAAGCCCTTTTTG
1 TAACTGGGGCAAAGCCCTTTTTG
63506757 CACTTCCCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (25 bp):
TAACTGGGGCAAAGCCCTTTTTGAT
Found at i:63506845 original size:10 final size:10
Alignment explanation
Indices: 63506821--63506867 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
63506811 CATCTCATAA
63506821 CATATCATGT
1 CATATCATGT
63506831 GCATATCATGT
1 -CATATCATGT
63506842 CATATCATGT
1 CATATCATGT
63506852 CATATCATGT
1 CATATCATGT
63506862 -ATATCA
1 CATATCA
63506868 AAATCTCATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.17
10 20 0.56
11 10 0.28
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:63506845 original size:21 final size:21
Alignment explanation
Indices: 63506801--63506867 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
63506791 ATAAATGAAT
* * **
63506801 ATATCTTGTGCATCTCATAAC
1 ATATCATGTGCATATCATGTC
63506822 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATGTC
63506843 ATATCATGT-CATATCATGT-
1 ATATCATGTGCATATCATGTC
63506862 ATATCA
1 ATATCA
63506868 AAATCTCATG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.14
20 10 0.24
21 26 0.62
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.39
Consensus pattern (21 bp):
ATATCATGTGCATATCATGTC
Found at i:63514179 original size:47 final size:47
Alignment explanation
Indices: 63514066--63514179 Score: 117
Period size: 47 Copynumber: 2.4 Consensus size: 47
63514056 GTAAGGTGTC
* * * *
63514066 GATGCCATGTCCTAGACACGGTCTTACATTGGCTCATATCTCAAGTA
1 GATGCCATGTCCTAGACATGGTCTTACACTGACTCATACCTCAAGTA
* * *
63514113 GATGCCATGTCCCAAACATGGTCTTACACTGACT-AT-CCTCTAGTA
1 GATGCCATGTCCTAGACATGGTCTTACACTGACTCATACCTCAAGTA
63514158 GCTGATG-CATGTCCTAGACATG
1 ---GATGCCATGTCCTAGACATG
63514180 ACTTACATTG
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
45 7 0.13
46 2 0.04
47 42 0.76
48 4 0.07
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.29
Consensus pattern (47 bp):
GATGCCATGTCCTAGACATGGTCTTACACTGACTCATACCTCAAGTA
Found at i:63514431 original size:15 final size:15
Alignment explanation
Indices: 63514411--63514443 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
63514401 CTACAATCTC
*
63514411 ATTTATGCTGTAATA
1 ATTTATACTGTAATA
63514426 ATTTATACTGTAATA
1 ATTTATACTGTAATA
63514441 ATT
1 ATT
63514444 CAAGCACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.48
Consensus pattern (15 bp):
ATTTATACTGTAATA
Found at i:63522856 original size:79 final size:81
Alignment explanation
Indices: 63522747--63522929 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
63522737 TACTCGTTCA
* *
63522747 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
63522810 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
63522827 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
63522890 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
63522906 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
63522930 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:63522929 original size:40 final size:40
Alignment explanation
Indices: 63522726--63522929 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
63522716 CGGAATTTAA
** *
63522726 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63522766 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63522806 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
63522845 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
63522885 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
63522925 CCGGA
1 CCGGA
63522930 CATCATTCGA
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 95 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:63530964 original size:79 final size:80
Alignment explanation
Indices: 63530852--63531001 Score: 198
Period size: 79 Copynumber: 1.9 Consensus size: 80
63530842 CGGTTATAGT
* * *
63530852 AACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTCAGG-C
1 AACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTCAGGAC
63530915 TTAGCCCAGAATTAGC
65 TTAGCCCAGAATTAGC
** * *
63530931 AACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGAC
1 AACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCAGGAC
63530995 TTAGCCC
65 TTAGCCC
63531002 GGACATCATT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
78 3 0.05
79 46 0.75
80 12 0.20
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.23
Consensus pattern (80 bp):
AACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCAGGACT
TAGCCCAGAATTAGC
Found at i:63531004 original size:40 final size:40
Alignment explanation
Indices: 63530801--63531004 Score: 227
Period size: 40 Copynumber: 5.1 Consensus size: 40
63530791 CGGAATTTAA
* ** *
63530801 CCGGATATAGCAACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63530841 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
63530881 CCGGATTTAGTAACTCGCACCAATGCCTTCAGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
63530920 CCAGA-ATTAGCAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
63530960 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
63531000 CCGGA
1 CCGGA
63531005 CATCATTCGA
Statistics
Matches: 137, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.01
39 30 0.22
40 93 0.68
41 12 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:63537118 original size:43 final size:44
Alignment explanation
Indices: 63536998--63537120 Score: 128
Period size: 44 Copynumber: 2.8 Consensus size: 44
63536988 ACATAGGATT
* *
63536998 TCGATATGTGATT-GGTGTAAGACCACGTCTGGGA-TGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACAGTTGGCA
* * * *
63537040 TCGATTTTTAATTTACGTGTAAGACC-CTGTGTGGGACAG-TGGCA
1 TCGATATGTGA-TTACGTGTAAGACCAC-GTCTGGGACAGTTGGCA
* *
63537084 TCGATATGTGATTACATGTAAGACCACATCTGGGACA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACA
63537121 TTCGTGTTAT
Statistics
Matches: 64, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
42 8 0.12
43 24 0.38
44 31 0.48
45 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (44 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTGGGACAGTTGGCA
Found at i:63539353 original size:64 final size:65
Alignment explanation
Indices: 63539285--63539408 Score: 146
Period size: 64 Copynumber: 1.9 Consensus size: 65
63539275 CAGTATTCTC
* **
63539285 CTAAGAACCACACGGTCT-T-GACACACGGGCGTGTCTA-TGGCCGTGGGCTAAAGTCAGTAGCT
1 CTAAGAACCACACGG-CTATAG-CACACGGGCGTGCCTATTGGCCGTGGGAAAAAGTCAGTAGCT
63539347 AG
64 AG
* * * *
63539349 CTAAGTATCACATGGCTATAGCACACGGGCGTGCCTATTGGCCGTGTGAAAAAGTCAGTA
1 CTAAGAACCACACGGCTATAGCACACGGGCGTGCCTATTGGCCGTGGGAAAAAGTCAGTA
63539409 TTGGACCTAT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
63 2 0.04
64 28 0.56
65 20 0.40
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (65 bp):
CTAAGAACCACACGGCTATAGCACACGGGCGTGCCTATTGGCCGTGGGAAAAAGTCAGTAGCTAG
Found at i:63548127 original size:15 final size:15
Alignment explanation
Indices: 63548103--63548142 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
63548093 TGTAAATTGT
*
63548103 ATTTCCTTATCATGG
1 ATTTCTTTATCATGG
*
63548118 ATTTCTTTATCTTGG
1 ATTTCTTTATCATGG
*
63548133 AATTCTTTAT
1 ATTTCTTTAT
63548143 TCTGGGCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.55
Consensus pattern (15 bp):
ATTTCTTTATCATGG
Found at i:63548753 original size:21 final size:21
Alignment explanation
Indices: 63548729--63548773 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
63548719 TGAAACGATC
63548729 ATTGTTTATCTTTGAGTACAA
1 ATTGTTTATCTTTGAGTACAA
63548750 ATTGTTTATCTTTGAGTACAA
1 ATTGTTTATCTTTGAGTACAA
63548771 ATT
1 ATT
63548774 CTTGAAATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.49
Consensus pattern (21 bp):
ATTGTTTATCTTTGAGTACAA
Found at i:63555188 original size:25 final size:25
Alignment explanation
Indices: 63555150--63555203 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
63555140 CAGTGAGAAT
63555150 AAGATACACAGGGTCGATTTGATCA
1 AAGATACACAGGGTCGATTTGATCA
*
63555175 AAGATACACGGGGTCGATTTGATCA
1 AAGATACACAGGGTCGATTTGATCA
63555200 AAGA
1 AAGA
63555204 GACTAAACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (25 bp):
AAGATACACAGGGTCGATTTGATCA
Found at i:63555619 original size:13 final size:13
Alignment explanation
Indices: 63555601--63555625 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63555591 TATATTATAT
63555601 GTGTGAAAATTTC
1 GTGTGAAAATTTC
63555614 GTGTGAAAATTT
1 GTGTGAAAATTT
63555626 TATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:63556856 original size:43 final size:44
Alignment explanation
Indices: 63556737--63556865 Score: 144
Period size: 44 Copynumber: 3.0 Consensus size: 44
63556727 CATAGGATTC
*
63556737 CGATATGTGATT-CGA-GTAAGACCACGTCTGGGA-CGTTGGCAT
1 CGATATGTGATTAC-ATGTAAGACCACGTCTGGGATAGTTGGCAT
* * *
63556779 CAATTTGTGATTTACGTGTAAGACC-CTGTCTGGGATAG-TGGCAT
1 CGATATGTGA-TTACATGTAAGACCAC-GTCTGGGATAGTTGGCAT
*
63556823 CGATATGTGATTACATGTAAGACCACGTCTGGGAT-GTTAGCAT
1 CGATATGTGATTACATGTAAGACCACGTCTGGGATAGTTGGCAT
63556866 TGCACGAGTT
Statistics
Matches: 72, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
42 9 0.12
43 30 0.42
44 32 0.44
45 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (44 bp):
CGATATGTGATTACATGTAAGACCACGTCTGGGATAGTTGGCAT
Found at i:63564339 original size:52 final size:51
Alignment explanation
Indices: 63564274--63564372 Score: 128
Period size: 52 Copynumber: 1.9 Consensus size: 51
63564264 ATAAATTTTT
* * *
63564274 TAAAATATGTTAGAATTTTTAAGAA-ATTATAAAAAAAATTATAAAAATACTA
1 TAAAATATATTAGAAATTCTAA-AATATTAT-AAAAAAATTATAAAAATACTA
* *
63564326 TAAAATATATTAGAAATTCTAAAATATTGTAAAAAATTTATAAAAAT
1 TAAAATATATTAGAAATTCTAAAATATTATAAAAAAATTATAAAAAT
63564373 TATCAGAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
51 18 0.44
52 23 0.56
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (51 bp):
TAAAATATATTAGAAATTCTAAAATATTATAAAAAAATTATAAAAATACTA
Found at i:63564943 original size:20 final size:19
Alignment explanation
Indices: 63564920--63564958 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
63564910 TTTTTATTTA
*
63564920 CAAATTAATATATTGGTCTT
1 CAAATAAATA-ATTGGTCTT
*
63564940 CAAATAAATAATTTGTCTT
1 CAAATAAATAATTGGTCTT
63564959 GGGATGGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (19 bp):
CAAATAAATAATTGGTCTT
Found at i:63573925 original size:13 final size:13
Alignment explanation
Indices: 63573907--63573931 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63573897 CATACTAAAA
63573907 TAATTCATTTAAG
1 TAATTCATTTAAG
63573920 TAATTCATTTAA
1 TAATTCATTTAA
63573932 TATATTATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (13 bp):
TAATTCATTTAAG
Found at i:63574185 original size:42 final size:42
Alignment explanation
Indices: 63574124--63574237 Score: 120
Period size: 42 Copynumber: 2.7 Consensus size: 42
63574114 GTGCTAAATG
* * * * * *
63574124 GAAACCCGTAAGGGCTAAACGGAAGTTCATAGGAGCTGAACA
1 GAAACCCATAAGGGTTAAACGGAAGCTCAAAAGAGCTAAACA
* * **
63574166 GAAACTCATAAGGGTTAAACTGAAGCTCAAAAGAGCTAAATG
1 GAAACCCATAAGGGTTAAACGGAAGCTCAAAAGAGCTAAACA
* *
63574208 GAAACCCATTAGGGTTAAACGGAAACTCAA
1 GAAACCCATAAGGGTTAAACGGAAGCTCAA
63574238 GTGAGTTAAC
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.17
Consensus pattern (42 bp):
GAAACCCATAAGGGTTAAACGGAAGCTCAAAAGAGCTAAACA
Found at i:63575711 original size:61 final size:61
Alignment explanation
Indices: 63575616--63575738 Score: 228
Period size: 61 Copynumber: 2.0 Consensus size: 61
63575606 TCAGTTTATG
63575616 AATTTATTCACTTGTGACGTTCATAGTGTGACATACCTTAATCCTGAGTGCATGATGAACT
1 AATTTATTCACTTGTGACGTTCATAGTGTGACATACCTTAATCCTGAGTGCATGATGAACT
* *
63575677 AATTTATTCCCTTGTGACGTTCATAGTGTGACATACCTTAATCCTGAGTGGATGATGAACT
1 AATTTATTCACTTGTGACGTTCATAGTGTGACATACCTTAATCCTGAGTGCATGATGAACT
63575738 A
1 A
63575739 TGTATGTGTG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (61 bp):
AATTTATTCACTTGTGACGTTCATAGTGTGACATACCTTAATCCTGAGTGCATGATGAACT
Found at i:63578750 original size:27 final size:27
Alignment explanation
Indices: 63578713--63578784 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
63578703 CCTAGACCCC
* ** * *
63578713 TTATGTCGTAAAATGGTTGTTTTTCCT
1 TTATGTGGTAAAATGACTGTCTTGCCT
63578740 TTATGTGGTAAAATGACTGTCTTGCCT
1 TTATGTGGTAAAATGACTGTCTTGCCT
* *
63578767 TTATATGGTGAAATGACT
1 TTATGTGGTAAAATGACT
63578785 ATTTTTGTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.44
Consensus pattern (27 bp):
TTATGTGGTAAAATGACTGTCTTGCCT
Found at i:63581189 original size:46 final size:46
Alignment explanation
Indices: 63581063--63581280 Score: 171
Period size: 46 Copynumber: 4.6 Consensus size: 46
63581053 CCGACGCAAC
* *
63581063 GTCCCAGACATTGTCTTACACTAGCTCTCACATATC-TGTGCCGATGCTAT
1 GTCCCAGACA-TGTCTTACACTAGCT-T-ACATCTCAT-AGCCGATG-TAT
*
63581113 GTCCCAGACATGGTCTTACA-TTGAC--ACATCTCATAGCCGATGTAT
1 GTCCCAGACAT-GTCTTACACTAG-CTTACATCTCATAGCCGATGTAT
* * *
63581158 GTCCCAAACATGTCTTACACTAGCTTACATCTCGA-GGCCGATGCAT
1 GTCCCAGACATGTCTTACACTAGCTTACATCTC-ATAGCCGATGTAT
* * * *
63581204 GTCCCAGACATGTCTTACACTAGCACT-CGTCTCA-ATGCCGAAGCCAT
1 GTCCCAGACATGTCTTACACTAGC-TTACATCTCATA-GCCGATG-TAT
* *
63581251 ATCCCAGATATGGTCTTACACTAGCTTACA
1 GTCCCAGACAT-GTCTTACACTAGCTTACA
63581281 ATAACCCATA
Statistics
Matches: 140, Mismatches: 16, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
44 9 0.06
45 16 0.11
46 63 0.45
47 16 0.11
48 14 0.10
49 3 0.02
50 19 0.14
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
GTCCCAGACATGTCTTACACTAGCTTACATCTCATAGCCGATGTAT
Found at i:63581267 original size:94 final size:92
Alignment explanation
Indices: 63581064--63581280 Score: 235
Period size: 94 Copynumber: 2.3 Consensus size: 92
63581054 CGACGCAACG
*
63581064 TCCCAGACATTGTCTTACACTAGCTCTCACATATCTGTGCCGATGCTATGTCCCAGACATGGTCT
1 TCCCAGACA-TGTCTTACACTAGCT-T-ACATATCTGGGCCGATGCTATGTCCCAGACATGGTCT
* * * *
63581129 TACATTGACACATCTCATAGCCGATGTATG
63 TACATAGACACATCTCATAGCCGAAGCATA
* *
63581159 TCCCAAACATGTCTTACACTAGCTTACATCTC-GAGGCCGATGC-ATGTCCCAGACAT-GTCTTA
1 TCCCAGACATGTCTTACACTAGCTTACATATCTG-GGCCGATGCTATGTCCCAGACATGGTCTTA
* *
63581221 CACTAGCACTCGTCTCA-ATGCCGAAGCCATA
65 CA-TAG-ACACATCTCATA-GCCGAAG-CATA
*
63581252 TCCCAGATATGGTCTTACACTAGCTTACA
1 TCCCAGACAT-GTCTTACACTAGCTTACA
63581281 ATAACCCATA
Statistics
Matches: 105, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
90 8 0.08
91 17 0.16
92 28 0.27
93 11 0.10
94 33 0.31
95 8 0.08
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (92 bp):
TCCCAGACATGTCTTACACTAGCTTACATATCTGGGCCGATGCTATGTCCCAGACATGGTCTTAC
ATAGACACATCTCATAGCCGAAGCATA
Found at i:63582147 original size:27 final size:27
Alignment explanation
Indices: 63582116--63582421 Score: 394
Period size: 27 Copynumber: 11.6 Consensus size: 27
63582106 GCTGTTACAA
*
63582116 TTTTGCCCTTATGTGGTGAAATGATTG
1 TTTTGCCCTTATGTGGTGAAATGACTG
* * *
63582143 TTTTGTCCTTATGTGGTAAAATGATTG
1 TTTTGCCCTTATGTGGTGAAATGACTG
* * *
63582170 TTTTGCCCTTATGTGATAAAATGACTA
1 TTTTGCCCTTATGTGGTGAAATGACTG
*
63582197 TTTTGCCCTTATATGGTGAAATGACTG
1 TTTTGCCCTTATGTGGTGAAATGACTG
63582224 TTTTGCCCTTATGTGGTGAAATGACTG
1 TTTTGCCCTTATGTGGTGAAATGACTG
* * *
63582251 TTTTGTCCTTATGTGGTAAAATGATTG
1 TTTTGCCCTTATGTGGTGAAATGACTG
*
63582278 TTTTGCCCTTATGTGGTAAAATGACTG
1 TTTTGCCCTTATGTGGTGAAATGACTG
*
63582305 TTTTGCCCTTATGTGGTGAAATGACTA
1 TTTTGCCCTTATGTGGTGAAATGACTG
* *
63582332 TTTTTCCCTTATGT-G-G---TGACTA
1 TTTTGCCCTTATGTGGTGAAATGACTG
63582354 TTTTGCCCTTATGTGGT-AAGATGACTG
1 TTTTGCCCTTATGTGGTGAA-ATGACTG
*
63582381 TTTTGCCCTTATTTGGT-AAGATGACTG
1 TTTTGCCCTTATGTGGTGAA-ATGACTG
63582408 TTTTGCCC-TATGTG
1 TTTTGCCCTTATGTG
63582422 ATGTATATAT
Statistics
Matches: 250, Mismatches: 23, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
22 19 0.08
23 1 0.00
25 1 0.00
26 6 0.02
27 223 0.89
ACGTcount: A:0.20, C:0.14, G:0.22, T:0.44
Consensus pattern (27 bp):
TTTTGCCCTTATGTGGTGAAATGACTG
Found at i:63582354 original size:22 final size:22
Alignment explanation
Indices: 63582299--63582370 Score: 81
Period size: 22 Copynumber: 3.0 Consensus size: 22
63582289 TGTGGTAAAA
*
63582299 TGACTGTTTTGCCCTTATGTGGTG
1 TGACTATTTTGCCCTTATGT-G-G
*
63582323 AAATGACTATTTTTCCCTTATGTGG
1 ---TGACTATTTTGCCCTTATGTGG
63582348 TGACTATTTTGCCCTTATGTGG
1 TGACTATTTTGCCCTTATGTGG
63582370 T
1 T
63582371 AAGATGACTG
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
22 22 0.52
25 1 0.02
26 1 0.02
27 18 0.43
ACGTcount: A:0.15, C:0.17, G:0.22, T:0.46
Consensus pattern (22 bp):
TGACTATTTTGCCCTTATGTGG
Found at i:63587871 original size:31 final size:31
Alignment explanation
Indices: 63587833--63587928 Score: 120
Period size: 31 Copynumber: 3.0 Consensus size: 31
63587823 TCATACATAT
63587833 GTATGATAAACATGCCATATTGTTTAGGGAA
1 GTATGATAAACATGCCATATTGTTTAGGGAA
*
63587864 GTATGATAAACATGCCATATAATAATTTAGGGAA
1 GTATGATAAACATGCCATAT--T-GTTTAGGGAA
* * * *
63587898 GCATGATAAACATGCCAGATAGTTTAAGGAA
1 GTATGATAAACATGCCATATTGTTTAGGGAA
63587929 AGAATGTCAC
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
31 28 0.50
33 1 0.02
34 27 0.48
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (31 bp):
GTATGATAAACATGCCATATTGTTTAGGGAA
Found at i:63587898 original size:34 final size:31
Alignment explanation
Indices: 63587833--63587914 Score: 119
Period size: 34 Copynumber: 2.5 Consensus size: 31
63587823 TCATACATAT
*
63587833 GTATGATAAACATGCCATATTGTTTAGGGAA
1 GTATGATAAACATGCCATATTATTTAGGGAA
63587864 GTATGATAAACATGCCATATAATAATTTAGGGAA
1 GTATGATAAACATGCCATAT--T-ATTTAGGGAA
*
63587898 GCATGATAAACATGCCA
1 GTATGATAAACATGCCA
63587915 GATAGTTTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
31 20 0.43
33 1 0.02
34 25 0.54
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (31 bp):
GTATGATAAACATGCCATATTATTTAGGGAA
Found at i:63591790 original size:47 final size:47
Alignment explanation
Indices: 63591712--63592164 Score: 726
Period size: 47 Copynumber: 9.6 Consensus size: 47
63591702 CCCTTCGGGA
* * * * * *
63591712 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
63591759 CCTGTCACATATATACACTTTCACGTTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63591806 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63591853 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63591900 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63591949 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63591996 CTTATCACATATATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63592045 CTTATCACATATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63592092 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63592139 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
63592165 CACAATTATC
Statistics
Matches: 382, Mismatches: 20, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 290 0.76
49 92 0.24
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63591941 original size:96 final size:96
Alignment explanation
Indices: 63591712--63592164 Score: 729
Period size: 96 Copynumber: 4.8 Consensus size: 96
63591702 CCCTTCGGGA
* * * * * * *
63591712 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
63591775 ACTTTCACGTTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
63591806 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63591869 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
63591900 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63591965 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
63591996 CTTATCACATATATATACACTTTCACATTCATCACATTGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
63592061 ACTTTCACATTCATCACATTGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
63592092 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
63592155 ACATTCACAT
66 ACTTTCACAT
63592165 CACAATTATC
Statistics
Matches: 338, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
93 1 0.00
94 151 0.45
96 186 0.55
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63591968 original size:143 final size:141
Alignment explanation
Indices: 63591712--63592164 Score: 744
Period size: 143 Copynumber: 3.2 Consensus size: 141
63591702 CCCTTCGGGA
* * * * * * *
63591712 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
*
63591777 TTTCACGTTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
63591842 GGCCATTAGGC
131 GGCCATTAGGC
*
63591853 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATAC
*
63591918 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63591983 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
63591996 CTTATCACATATATATACACTTTCACATTCATCACATTGGCTATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
*
63592061 ACTTTCACATTCATCACATTGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63592126 TCGGCCATTAGGC
129 TCGGCCATTAGGC
* *
63592139 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
63592165 CACAATTATC
Statistics
Matches: 292, Mismatches: 16, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
141 63 0.22
143 184 0.63
145 45 0.15
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:63595484 original size:18 final size:18
Alignment explanation
Indices: 63595461--63595518 Score: 77
Period size: 18 Copynumber: 3.4 Consensus size: 18
63595451 TGATAGCTTT
63595461 CACCTATCCAACTTGTAA
1 CACCTATCCAACTTGTAA
**
63595479 CACCTATATAACTT-T--
1 CACCTATCCAACTTGTAA
63595494 CACCTATCCAACTTGTAA
1 CACCTATCCAACTTGTAA
63595512 CACCTAT
1 CACCTAT
63595519 AACCCATTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
15 12 0.36
16 1 0.03
17 1 0.03
18 19 0.58
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.31
Consensus pattern (18 bp):
CACCTATCCAACTTGTAA
Found at i:63595499 original size:33 final size:33
Alignment explanation
Indices: 63595457--63595519 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
63595447 GAGATGATAG
63595457 CTTTCACCTATCCAACTTGTAACACCTATATAA
1 CTTTCACCTATCCAACTTGTAACACCTATATAA
63595490 CTTTCACCTATCCAACTTGTAACACCTATA
1 CTTTCACCTATCCAACTTGTAACACCTATA
63595520 ACCCATTTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.32, C:0.32, G:0.03, T:0.33
Consensus pattern (33 bp):
CTTTCACCTATCCAACTTGTAACACCTATATAA
Found at i:63595506 original size:15 final size:15
Alignment explanation
Indices: 63595457--63595507 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
63595447 GAGATGATAG
63595457 CTTTCACCTATCCAA
1 CTTTCACCTATCCAA
**
63595472 CTTGTAACACCTATATAA
1 CTT-T--CACCTATCCAA
63595490 CTTTCACCTATCCAA
1 CTTTCACCTATCCAA
63595505 CTT
1 CTT
63595508 GTAACACCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
15 15 0.52
16 1 0.03
17 1 0.03
18 12 0.41
ACGTcount: A:0.29, C:0.33, G:0.02, T:0.35
Consensus pattern (15 bp):
CTTTCACCTATCCAA
Found at i:63598729 original size:39 final size:39
Alignment explanation
Indices: 63598681--63598808 Score: 195
Period size: 39 Copynumber: 3.3 Consensus size: 39
63598671 CTTAGCCCGA
* * * *
63598681 ATATTTTTCCAGCACT-TAGCCTGCGAACTTTAAGTCCGG
1 ATATATTTCCAGCA-TAAAGCCTGCGGACTTCAAGTCCGG
*
63598720 ATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCAG
1 ATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCGG
63598759 ATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCGG
1 ATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCGG
63598798 ATATATTTCCA
1 ATATATTTCCA
63598809 ATACCATGTG
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 81 0.99
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (39 bp):
ATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCGG
Done.