Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 193 of 352
Found at i:63603355 original size:46 final size:47
Alignment explanation
Indices: 63603300--63603620 Score: 354
Period size: 46 Copynumber: 6.7 Consensus size: 47
63603290 AGGCTAATGG
63603300 GCCGATGTGATGAATGTGAAAG-GTATATAAT-TGATAAGGCCTAATA
1 GCCGATGTGATGAATGTGAAAGTGTATAT-ATGTGATAAGGCCTAATA
* * *
63603346 GTCGATGTGATG-ATGTGAAAGTGTCATATGTGGTGCATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGT-ATATAT-GTG-ATAAGGCCTAATA
63603395 GCCGATGTGAATGAAAATGTGAAAGTGTATATACTGTGATAAGGGCCTAATA
1 GCCGATGTG-ATG--AATGTGAAAGTGTATATA-TGTGATAA-GGCCTAATA
**
63603447 GCTCGATGTGATGAATGTG-AAGTGTATATCGGTGATAAGGCC-AATA
1 GC-CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
* *
63603493 GGCCGATGTGATGAAATGTGAAAGTGTATATATGTAATAAGG-CTAATG
1 -GCCGATGTGATG-AATGTGAAAGTGTATATATGTGATAAGGCCTAATA
* *
63603541 GCCGATGTGATGAATGTGAAAGTGTATAT-TG-AATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
* * *
63603586 GCCAATGTG-TGAATGTGACAGTATATATAATGTGA
1 GCCGATGTGATGAATGTGAAAGTGTATAT-ATGTGA
63603621 CAGGGCCCGA
Statistics
Matches: 239, Mismatches: 16, Indels: 39
0.81 0.05 0.13
Matches are distributed among these distances:
44 24 0.10
45 25 0.10
46 47 0.20
47 30 0.13
48 30 0.13
49 30 0.13
50 9 0.04
51 4 0.02
52 20 0.08
53 20 0.08
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
Found at i:63603486 original size:99 final size:97
Alignment explanation
Indices: 63603288--63603620 Score: 394
Period size: 99 Copynumber: 3.5 Consensus size: 97
63603278 GAAATTATAG
*
63603288 TAAGG-CTAATGGGCCGATGTGATG-AATGTGAAAG-GTATATAAT-TGATAAGGCCTAATAG-T
1 TAAGGCCTAATAGGCCGATGTGATGAAATGTGAAAGTGTATAT-ATGTGATAAGGCCTAATAGCT
*
63603348 CGATGTGATG-ATGTGAAAGTGTCATATGTGGTGCA
65 CGATGTGATGAATGTGAAAGTGT-ATA--TGGTGAA
63603383 TAAGGCCTAAT-GGCCGATGTGAATGAAAATGTGAAAGTGTATATACTGTGATAAGGGCCTAATA
1 TAAGGCCTAATAGGCCGATGTG-ATG-AAATGTGAAAGTGTATATA-TGTGATAA-GGCCTAATA
63603447 GCTCGATGTGATGAATGTG-AAGTGTATATCGGTG-A
62 GCTCGATGTGATGAATGTGAAAGTGTATAT-GGTGAA
* *
63603482 TAAGGCC-AATAGGCCGATGTGATGAAATGTGAAAGTGTATATATGTAATAAGG-CTAATGGC-C
1 TAAGGCCTAATAGGCCGATGTGATGAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTC
63603544 GATGTGATGAATGTGAAAGTGTATAT--TGAA
66 GATGTGATGAATGTGAAAGTGTATATGGTGAA
* * *
63603574 TAAGGCCTAAT-GGCCAATGTG-TG-AATGTGACAGTATATATAATGTGA
1 TAAGGCCTAATAGGCCGATGTGATGAAATGTGAAAGTGTATAT-ATGTGA
63603621 CAGGGCCCGA
Statistics
Matches: 216, Mismatches: 6, Indels: 36
0.84 0.02 0.14
Matches are distributed among these distances:
90 15 0.07
91 9 0.04
92 17 0.08
93 19 0.09
94 17 0.08
95 17 0.08
96 15 0.07
97 19 0.09
98 17 0.08
99 26 0.12
100 10 0.05
101 13 0.06
102 17 0.08
103 5 0.02
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (97 bp):
TAAGGCCTAATAGGCCGATGTGATGAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCTC
GATGTGATGAATGTGAAAGTGTATATGGTGAA
Found at i:63607690 original size:47 final size:47
Alignment explanation
Indices: 63607639--63607971 Score: 401
Period size: 47 Copynumber: 7.0 Consensus size: 47
63607629 CTCGGCCCTG
* *
63607639 TCACATATTATATACTTTCACATTCA-CACATTGGCCATTAGGCCTTA
1 TCACATA-TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
63607686 TCACATAATATACACTTTCACATTCATCACATC-GTCATTAAGGCCTTA
1 TCACAT-ATATACACTTTCACATTCATCACATCGGCCATT-AGGCCTTA
* *
63607734 TTACATATATACACTTTCACA-TCATCACATCGAGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCG-GCCATTAGGCCTTA
* * *
63607781 TCAACCTATATAC-CTTTTCACATTCATCACCATCGGCTATTAAGCCTTA
1 TC-ACATATATACAC-TTTCACATTCATCA-CATCGGCCATTAGGCCTTA
63607830 TCACGATATATACACTTTCACGTATTCATCACATCGGCCATTAGGCCTTA
1 TCAC-ATATATACACTTTCAC--ATTCATCACATCGGCCATTAGGCCTTA
* * *
63607880 TCACACATATACACTTTCACATTCATC-CAATCGACTATTAGG-CTTA
1 TCACATATATACACTTTCACATTCATCAC-ATCGGCCATTAGGCCTTA
63607926 TCACATATAT-CACTTTTCACATTCATCACAATCGGCCATTAGGCCT
1 TCACATATATACAC-TTTCACATTCATCAC-ATCGGCCATTAGGCCT
63607972 ACTATATTTC
Statistics
Matches: 251, Mismatches: 18, Indels: 33
0.83 0.06 0.11
Matches are distributed among these distances:
45 3 0.01
46 37 0.15
47 84 0.33
48 43 0.17
49 49 0.20
50 27 0.11
51 8 0.03
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:63607960 original size:144 final size:142
Alignment explanation
Indices: 63607647--63607971 Score: 441
Period size: 144 Copynumber: 2.3 Consensus size: 142
63607637 TGTCACATAT
*
63607647 TATATAC-TTTCACATTCA-CACATTGGCCATTAGGCCTTATCACATAATATACACTTTCACATT
1 TATATACTTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAATATACACTTTCACATT
* * *
63607710 CATCACATCGTCATTAAGGCCTTATTACATATATACACTTTCACATCATCACATCGAGCTATTAG
66 CATCACATCGCCATTAAGGCCTTATCACACATATACACTTTCACATCATCACATCGAGCTATTAG
*
63607775 GCCTTATCAACC
131 GCCTTATCAACA
* *
63607787 TATATACCTTTTCACATTCATCACCATCGGCTATTAAGCCTTATCACGAT-ATATACACTTTCAC
1 TATATA-CTTTTCACATTCATCA-CATCGGCCATTAGGCCTTATCAC-ATAATATACACTTTCAC
63607851 GTATTCATCACATCGGCCATT-AGGCCTTATCACACATATACACTTTCACATTCATC-CAATCGA
63 --ATTCATCACATC-GCCATTAAGGCCTTATCACACATATACACTTTCACA-TCATCAC-ATCGA
63607914 -CTATTAGG-CTTATC-ACA
123 GCTATTAGGCCTTATCAACA
63607931 TATATCACTTTTCACATTCATCACAATCGGCCATTAGGCCT
1 TATAT-ACTTTTCACATTCATCAC-ATCGGCCATTAGGCCT
63607972 ACTATATTTC
Statistics
Matches: 164, Mismatches: 9, Indels: 20
0.85 0.05 0.10
Matches are distributed among these distances:
140 6 0.04
141 1 0.01
142 11 0.07
143 3 0.02
144 71 0.43
145 9 0.05
146 48 0.29
147 15 0.09
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (142 bp):
TATATACTTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAATATACACTTTCACATT
CATCACATCGCCATTAAGGCCTTATCACACATATACACTTTCACATCATCACATCGAGCTATTAG
GCCTTATCAACA
Found at i:63612528 original size:38 final size:39
Alignment explanation
Indices: 63612407--63612515 Score: 184
Period size: 39 Copynumber: 2.8 Consensus size: 39
63612397 CACATGGTAT
63612407 TGGAAATATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAATATATCCGGACTTGAAGTCCGCAGGCTTTATGC
*
63612446 TGGAAATATATCTGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAATATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* *
63612485 TGGAAAT-TATCCGGACTTAAAGTTCGCAGGC
1 TGGAAATATATCCGGACTTGAAGTCCGCAGGC
63612516 CTAAGTGCGG
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 21 0.32
39 45 0.68
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (39 bp):
TGGAAATATATCCGGACTTGAAGTCCGCAGGCTTTATGC
Found at i:63615662 original size:17 final size:17
Alignment explanation
Indices: 63615640--63615695 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
63615630 GAAATGGGTT
63615640 ATAGGTGTTACAAGTTG
1 ATAGGTGTTACAAGTTG
*
63615657 ATAGGTG--A-AAGTTAT
1 ATAGGTGTTACAAGTT-G
*
63615672 ATAGGTGTTACAAGTGG
1 ATAGGTGTTACAAGTTG
63615689 ATAGGTG
1 ATAGGTG
63615696 AAGCTATCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
14 5 0.16
15 8 0.25
17 15 0.47
18 4 0.12
ACGTcount: A:0.32, C:0.04, G:0.32, T:0.32
Consensus pattern (17 bp):
ATAGGTGTTACAAGTTG
Found at i:63619069 original size:46 final size:47
Alignment explanation
Indices: 63618935--63619381 Score: 674
Period size: 47 Copynumber: 9.6 Consensus size: 47
63618925 GATAATTGTG
* *
63618935 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
63618982 ATGTGAAAGTGTATATATGTGATAAGGCCTAAATAG-C-ATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGA
* *
63619028 ATGTG-AAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
63619074 ATGTGAAAGTGTTATATATGTGATAAGGCCTAAT-GCCGATGTGATGA
1 ATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
63619121 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
63619168 ATGTGAAAGTGTATATATATGTGATAA-GCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
63619216 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
63619263 ATGTG-AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
63619309 ACGTGAAAGTGTATATATGTGA-CAGGCCGAGTGGCCAACGTGAATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA
*
63619356 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
63619382 TCCCGAGGGC
Statistics
Matches: 372, Mismatches: 16, Indels: 23
0.91 0.04 0.06
Matches are distributed among these distances:
44 5 0.01
45 25 0.07
46 122 0.33
47 146 0.39
48 60 0.16
49 14 0.04
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:63623923 original size:33 final size:33
Alignment explanation
Indices: 63623881--63623944 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
63623871 GAAAAGTAAG
63623881 AGAAAACTTTTTGTGCTTCCTCTAAAGGGAAAT
1 AGAAAACTTTTTGTGCTTCCTCTAAAGGGAAAT
63623914 AGAAAACTTTTTGTGCTTCCTCTAAAGGGAA
1 AGAAAACTTTTTGTGCTTCCTCTAAAGGGAA
63623945 GGGAAAACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (33 bp):
AGAAAACTTTTTGTGCTTCCTCTAAAGGGAAAT
Found at i:63632082 original size:93 final size:93
Alignment explanation
Indices: 63631970--63632140 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
63631960 GCCCATAAGT
* * *
63631970 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAAATCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCAGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
63632034 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
63632063 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAAATCGGACTCAACTCAA
*
63632128 CGAGTTCGGATGC
66 CGAGCTCGGATGC
63632141 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAAATCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:63632132 original size:46 final size:44
Alignment explanation
Indices: 63631962--63632135 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 44
63631952 TGTAACCCGC
* *
63631962 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TT-CGCATTCGCAT
* * * *
63632008 CCATAAGTGAAATCGGACTCAACTCAACGAGCTCGGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGCATTCGC-A--T
* ***
63632054 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTC-G-CATTCGCAT
63632101 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
63632136 GATGCTCAAC
Statistics
Matches: 103, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 61 0.59
47 29 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGCATTCGCAT
Found at i:63632156 original size:46 final size:46
Alignment explanation
Indices: 63631967--63632156 Score: 119
Period size: 46 Copynumber: 4.1 Consensus size: 46
63631957 CCCGCCCATA
** * *
63631967 AGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAG-TTCGGATGCTCAACCATCC-T
* *
63632012 AAGTGAAATCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC-CT
* * * * * *
63632062 --CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGCTCAACCATCCT
63632106 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
63632152 AGTGA
1 AGTGA
63632157 CATGTCACTT
Statistics
Matches: 110, Mismatches: 18, Indels: 32
0.69 0.11 0.20
Matches are distributed among these distances:
44 9 0.08
45 3 0.03
46 59 0.54
47 27 0.25
48 1 0.01
49 4 0.04
50 6 0.05
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:63638291 original size:38 final size:38
Alignment explanation
Indices: 63638232--63638362 Score: 127
Period size: 38 Copynumber: 3.2 Consensus size: 38
63638222 TCTCAAATTA
*
63638232 ACATGTATAACCGTGGCATATCCACTTAGCACGACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * *
63638270 ACATGTTTAACTGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
63638311 GAATCAATATATGTAACCGTGGCATATCCAGTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
63638355 ACATGTAT
1 ACATGTAT
63638363 CAATATGTGT
Statistics
Matches: 74, Mismatches: 10, Indels: 18
0.73 0.10 0.18
Matches are distributed among these distances:
38 33 0.45
39 1 0.01
40 4 0.05
41 2 0.03
42 1 0.01
43 1 0.01
44 2 0.03
45 3 0.04
46 1 0.01
47 26 0.35
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:63638386 original size:48 final size:48
Alignment explanation
Indices: 63638277--63638405 Score: 179
Period size: 48 Copynumber: 2.7 Consensus size: 48
63638267 GTTACATGTT
*
63638277 TAACTGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * * *
63638324 TAACCGTGGCATATCCAGTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * *
63638372 TAATCGTGGTATATCCACTTAGCATCACATTACA
1 TAACCGTGGTATATCCACTTAGCACCACGTTACA
63638406 CTTATAACTA
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 29 0.41
48 42 0.59
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.31
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
Found at i:63639332 original size:84 final size:84
Alignment explanation
Indices: 63639191--63639355 Score: 321
Period size: 84 Copynumber: 2.0 Consensus size: 84
63639181 GGATTTCAAA
*
63639191 AATGCAAAGAACATTAAAAACGGGGCAAAGATGGACTTACAATCAAGCTTGGAAGTTTTAAAAAC
1 AATGCAAAGAACATTAAAAACGGGGCAAAGATGGACTTACAATCAAGCTTGAAAGTTTTAAAAAC
63639256 CCTAGCCATGTCTTCAGTC
66 CCTAGCCATGTCTTCAGTC
63639275 AATGCAAAGAACATTAAAAACGGGGCAAAGATGGACTTACAATCAAGCTTGAAAGTTTTAAAAAC
1 AATGCAAAGAACATTAAAAACGGGGCAAAGATGGACTTACAATCAAGCTTGAAAGTTTTAAAAAC
63639340 CCTAGCCATGTCTTCA
66 CCTAGCCATGTCTTCA
63639356 ATCTCCATAT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (84 bp):
AATGCAAAGAACATTAAAAACGGGGCAAAGATGGACTTACAATCAAGCTTGAAAGTTTTAAAAAC
CCTAGCCATGTCTTCAGTC
Found at i:63644266 original size:48 final size:48
Alignment explanation
Indices: 63644140--63644272 Score: 151
Period size: 48 Copynumber: 2.8 Consensus size: 48
63644130 TAACATGAAT
* * *
63644140 AACCATAGCATATCCACTTAGCACCACGTTA-ATGAATCGATATATGC
1 AACCATCGCATATCCACTTAGCACCACGTTACATGTATCAATATATGC
* * *
63644187 AACCATCGCATATCCACTTAGCACCATGTTACATGTATCAATATGTGT
1 AACCATCGCATATCCACTTAGCACCACGTTACATGTATCAATATATGC
* * * * * *
63644235 AATCGTGGTATATCCACTTAGCACTACGTTACACGTAT
1 AACCATCGCATATCCACTTAGCACCACGTTACATGTAT
63644273 AACCGTGGTA
Statistics
Matches: 72, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 29 0.40
48 43 0.60
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (48 bp):
AACCATCGCATATCCACTTAGCACCACGTTACATGTATCAATATATGC
Found at i:63648686 original size:19 final size:19
Alignment explanation
Indices: 63648662--63648698 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
63648652 ATTATTTCCT
*
63648662 ACGCTAGCTACGGATGTAA
1 ACGCTAGCTACAGATGTAA
63648681 ACGCTAGCTACAGATGTA
1 ACGCTAGCTACAGATGTA
63648699 GCCTGAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (19 bp):
ACGCTAGCTACAGATGTAA
Found at i:63661329 original size:29 final size:28
Alignment explanation
Indices: 63661243--63661345 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
63661233 ATGAATGTAA
** *
63661243 TTGGGCCTAACAGTCCATATAAATGTGAT
1 TTGGGCCTAATGGGCCATAT-AATGTGAT
*
63661272 TTGGGCCTAATGGGCCATATACAGGTGAT
1 TTGGGCCTAATGGGCCATATA-ATGTGAT
* *
63661301 TTAGGCCTAATGGGCCATATGAATATGA-
1 TTGGGCCTAATGGGCCATAT-AATGTGAT
*
63661329 TTGGGCTTAATGGGCCA
1 TTGGGCCTAATGGGCCA
63661346 GATATAGGTA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
28 16 0.25
29 46 0.73
30 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATAATGTGAT
Found at i:63664316 original size:7 final size:7
Alignment explanation
Indices: 63664304--63664329 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
63664294 CTTAGATGAA
63664304 TTGGGCT
1 TTGGGCT
63664311 TTGGGCT
1 TTGGGCT
63664318 TTGGGCT
1 TTGGGCT
63664325 TTGGG
1 TTGGG
63664330 TTTCATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.46, T:0.42
Consensus pattern (7 bp):
TTGGGCT
Found at i:63665833 original size:29 final size:28
Alignment explanation
Indices: 63665778--63665889 Score: 118
Period size: 29 Copynumber: 3.9 Consensus size: 28
63665768 GTAAGCATGA
* * * *
63665778 ATATGAATGTGACTGGGCCTGACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
63665806 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
*
63665835 ATATACAA-GTGATTTGGGCCTAATGGGTC
1 ATATA-AATGTGA-TTGGGCCTAATGGGCC
* * *
63665864 ATATGAATATGATTGGGCTTAATGGG
1 ATATAAATGTGATTGGGCCTAATGGG
63665890 TCAGATACAG
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 26 0.36
29 45 0.62
30 2 0.03
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:63669990 original size:32 final size:32
Alignment explanation
Indices: 63669916--63669991 Score: 89
Period size: 32 Copynumber: 2.4 Consensus size: 32
63669906 TGATATTGAA
* * * * *
63669916 ATGGGCTAGGCCCAATTGATATTGGTTCTGAT
1 ATGGGCTAGGCCAAACTGATATTGATTCTAAG
*
63669948 ATGCGCTAGGCCAAACTGATATTGATTCTAAG
1 ATGGGCTAGGCCAAACTGATATTGATTCTAAG
*
63669980 ATGGGATAGGCC
1 ATGGGCTAGGCC
63669992 CAATTGAGTC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (32 bp):
ATGGGCTAGGCCAAACTGATATTGATTCTAAG
Found at i:63681926 original size:16 final size:17
Alignment explanation
Indices: 63681905--63681940 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
63681895 TTTAAAAACA
*
63681905 TTCATTTT-TTTATTCT
1 TTCATTTTCTTCATTCT
63681921 TTCATTTTCTTCATTCT
1 TTCATTTTCTTCATTCT
63681938 TTC
1 TTC
63681941 CACACCTAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.11, C:0.19, G:0.00, T:0.69
Consensus pattern (17 bp):
TTCATTTTCTTCATTCT
Found at i:63684131 original size:43 final size:42
Alignment explanation
Indices: 63683990--63684153 Score: 206
Period size: 42 Copynumber: 3.9 Consensus size: 42
63683980 TTAGGGTTAC
63683990 TGAGA-TTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGACTT-CGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
63684032 TAAGACTTCGCGTAAGACCATATCTGGGATATGGCATCGATG
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
63684074 TGAGACTTCGTGTAAGACCATAGCTAGGCTATTGGCATCGATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* * *
63684117 CGAGA-TTACATGTAAGGCCATATCTGGGATATGGCAT
1 TGAGACTT-CGTGTAAGACCATATCTGGGATATGGCAT
63684154 TGGTACAGTA
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 70 0.67
43 34 0.33
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (42 bp):
TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:63684138 original size:85 final size:84
Alignment explanation
Indices: 63683990--63684153 Score: 215
Period size: 85 Copynumber: 1.9 Consensus size: 84
63683980 TTAGGGTTAC
* * * *
63683990 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATATAAGACTTCGCGTAAGACCATAT
1 TGAGATTACGTGTAAGACCATAGCTAGGATATGGCATCGATACAAGACTTCACGTAAGACCATAT
63684055 CTGGGATATGGCATCGATG
66 CTGGGATATGGCATCGATG
* * * *
63684074 TGAGACTT-CGTGTAAGACCATAGCTAGGCTATTGGCATCGATACGAGA-TTACATGTAAGGCCA
1 TGAGA-TTACGTGTAAGACCATAGCTAGGATA-TGGCATCGATACAAGACTT-CACGTAAGACCA
63684137 TATCTGGGATATGGCAT
63 TATCTGGGATATGGCAT
63684154 TGGTACAGTA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
84 27 0.39
85 42 0.61
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (84 bp):
TGAGATTACGTGTAAGACCATAGCTAGGATATGGCATCGATACAAGACTTCACGTAAGACCATAT
CTGGGATATGGCATCGATG
Found at i:63699232 original size:40 final size:40
Alignment explanation
Indices: 63699134--63699396 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
63699124 TCCTCGTTCA
* * * * *
63699134 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
63699173 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
63699213 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
63699253 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
63699293 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
63699333 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
63699373 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
63699397 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:63707187 original size:40 final size:40
Alignment explanation
Indices: 63707089--63707351 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
63707079 TCCTCGTTCA
* * * * *
63707089 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
63707128 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
63707168 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
63707208 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
63707248 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
63707288 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
63707328 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
63707352 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:63709990 original size:35 final size:35
Alignment explanation
Indices: 63709944--63710013 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
63709934 GAGAAAGTAA
63709944 ACGAATAGCCGTGGATATCTAGTCATCGACCACTT
1 ACGAATAGCCGTGGATATCTAGTCATCGACCACTT
*
63709979 ACGAATAGCCGTGGATATCTAGTCGTCGACCACTT
1 ACGAATAGCCGTGGATATCTAGTCATCGACCACTT
63710014 CCGAGGTAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (35 bp):
ACGAATAGCCGTGGATATCTAGTCATCGACCACTT
Found at i:63715648 original size:7 final size:7
Alignment explanation
Indices: 63715636--63715674 Score: 60
Period size: 7 Copynumber: 5.4 Consensus size: 7
63715626 GGACCCTATA
63715636 CCTAAAC
1 CCTAAAC
63715643 CCTAAAC
1 CCTAAAC
63715650 CCTAAAC
1 CCTAAAC
63715657 CCTAAAAC
1 CCT-AAAC
*
63715665 CTTAAAC
1 CCTAAAC
63715672 CCT
1 CCT
63715675 CGTTCAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 23 0.79
8 6 0.21
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.18
Consensus pattern (7 bp):
CCTAAAC
Found at i:63715655 original size:14 final size:15
Alignment explanation
Indices: 63715636--63715674 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
63715626 GGACCCTATA
63715636 CCTAAACCCT-AAAC
1 CCTAAACCCTAAAAC
63715650 CCTAAACCCTAAAAC
1 CCTAAACCCTAAAAC
*
63715665 CTTAAACCCT
1 CCTAAACCCT
63715675 CGTTCAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.18
Consensus pattern (15 bp):
CCTAAACCCTAAAAC
Found at i:63722573 original size:47 final size:47
Alignment explanation
Indices: 63722509--63722767 Score: 293
Period size: 47 Copynumber: 5.6 Consensus size: 47
63722499 ATCCATAGGT
63722509 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * * *
63722556 GAACTCGGACTCAACTCAATGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
63722602 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * * * *
63722649 GAACTCGGACTCAACTCAACGAGTTC-G-T-AC-ATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--TTCA-C
63722695 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
63722742 GAACTCGGACTCAACTCAACGAGTTC
1 GAACTCGGACTCAACTCAACGAGTTC
63722768 AGACATTCGC
Statistics
Matches: 174, Mismatches: 22, Indels: 32
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.01
43 10 0.06
44 2 0.01
45 5 0.03
46 55 0.32
47 81 0.47
48 5 0.03
49 2 0.01
50 10 0.06
51 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:63722575 original size:93 final size:93
Alignment explanation
Indices: 63722462--63722819 Score: 626
Period size: 93 Copynumber: 3.8 Consensus size: 93
63722452 CGCCCATCAG
* * * * *
63722462 CGAACTCGGACTCAACTCAATGAGCTCGGGCATTTGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63722527 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
63722555 CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63722620 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
63722648 CGAACTCGGACTCAACTCAACGAGTTCGTACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63722713 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
63722741 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63722806 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
63722820 TCAACCATCC
Statistics
Matches: 254, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 254 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:63722626 original size:46 final size:45
Alignment explanation
Indices: 63722463--63722816 Score: 294
Period size: 46 Copynumber: 7.6 Consensus size: 45
63722453 GCCCATCAGC
* * * *
63722463 GAACTCGGACTCAACTCAATGAGCTCGGGCATTTGCATCCATAGGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACA-TTGCATCCATAAGT
* * * *
63722509 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--TTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTGCATCCATAAGT
*
63722556 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGT
* * * *
63722602 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--TTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTGCATCCATAAGT
*
63722649 GAACTCGGACTCAACTCAACGAGTTCGTACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACA-TTGCATCCATAAGT
* * * *
63722695 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--TTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTGCATCCATAAGT
*
63722742 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGT
*
63722788 GAACTCAGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
63722817 TGCTCAACCA
Statistics
Matches: 246, Mismatches: 38, Indels: 48
0.74 0.11 0.14
Matches are distributed among these distances:
42 4 0.02
43 14 0.06
44 3 0.01
45 6 0.02
46 109 0.44
47 84 0.34
48 5 0.02
49 3 0.01
50 16 0.07
51 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAAGT
Found at i:63725229 original size:15 final size:15
Alignment explanation
Indices: 63725199--63725248 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
63725189 CAAAGATAAC
*
63725199 AAGAAAACCA-AATA
1 AAGAAATCCAGAATA
63725213 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
63725228 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
63725243 AAGAAA
1 AAGAAA
63725249 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 9 0.29
15 22 0.71
ACGTcount: A:0.62, C:0.12, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:63725257 original size:15 final size:15
Alignment explanation
Indices: 63725199--63725257 Score: 59
Period size: 15 Copynumber: 4.0 Consensus size: 15
63725189 CAAAGATAAC
*
63725199 AAGAAAACCAA-ATA
1 AAGAAATCCAAGATA
63725213 AAGAAATCC-AGAATA
1 AAGAAATCCAAG-ATA
* *
63725228 AAGAGATCCAGGATA
1 AAGAAATCCAAGATA
*
63725243 AAGAAACCCAAGATA
1 AAGAAATCCAAGATA
63725258 CGATACTATG
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
13 1 0.03
14 8 0.22
15 26 0.72
16 1 0.03
ACGTcount: A:0.59, C:0.15, G:0.15, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:63740593 original size:61 final size:61
Alignment explanation
Indices: 63740518--63740635 Score: 218
Period size: 61 Copynumber: 1.9 Consensus size: 61
63740508 TGCCATATAT
63740518 ATAGCCGAAGCTATCTCAATCTCATATCACATACACTACTCACACTAGAGCTATCAACGGG
1 ATAGCCGAAGCTATCTCAATCTCATATCACATACACTACTCACACTAGAGCTATCAACGGG
* *
63740579 ATAGCCGAAGCTATCTCAATCTCATATCACATATACTGCTCACACTAGAGCTATCAA
1 ATAGCCGAAGCTATCTCAATCTCATATCACATACACTACTCACACTAGAGCTATCAA
63740636 TGGCCCTGCT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.25
Consensus pattern (61 bp):
ATAGCCGAAGCTATCTCAATCTCATATCACATACACTACTCACACTAGAGCTATCAACGGG
Found at i:63743849 original size:21 final size:21
Alignment explanation
Indices: 63743823--63743914 Score: 166
Period size: 21 Copynumber: 4.4 Consensus size: 21
63743813 CTCTAGCACA
*
63743823 GGCGTGTCCCAGGGTCAAACG
1 GGCGTGTCCCAGGGTCACACG
63743844 GGCGTGTCCCAGGGTCACACG
1 GGCGTGTCCCAGGGTCACACG
63743865 GGCGTGTCCCAGGGTCACACG
1 GGCGTGTCCCAGGGTCACACG
*
63743886 GGAGTGTCCCAGGGTCACACG
1 GGCGTGTCCCAGGGTCACACG
63743907 GGCGTGTC
1 GGCGTGTC
63743915 TCTTGGACCA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 68 1.00
ACGTcount: A:0.15, C:0.30, G:0.39, T:0.15
Consensus pattern (21 bp):
GGCGTGTCCCAGGGTCACACG
Found at i:63744917 original size:19 final size:19
Alignment explanation
Indices: 63744895--63744933 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
63744885 CACGGCTGTC
63744895 TGCTTGGGACACGCACGTG
1 TGCTTGGGACACGCACGTG
*
63744914 TGCTTGGGACACGCCCGTG
1 TGCTTGGGACACGCACGTG
63744933 T
1 T
63744934 CCCACACCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.13, C:0.28, G:0.36, T:0.23
Consensus pattern (19 bp):
TGCTTGGGACACGCACGTG
Found at i:63746779 original size:31 final size:29
Alignment explanation
Indices: 63746744--63746803 Score: 93
Period size: 31 Copynumber: 2.0 Consensus size: 29
63746734 ATACCTCACA
63746744 TTGTTCATTATCGGCTTAAACTAACCCCAGG
1 TTGTTCATTATCGGCTT-AA-TAACCCCAGG
*
63746775 TTGTTCATTTTCGGCTTAATAACCCCAGG
1 TTGTTCATTATCGGCTTAATAACCCCAGG
63746804 CAAAATGACC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 10 0.36
30 2 0.07
31 16 0.57
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (29 bp):
TTGTTCATTATCGGCTTAATAACCCCAGG
Found at i:63757137 original size:28 final size:28
Alignment explanation
Indices: 63757097--63757166 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
63757087 ATAGTAAGTC
*
63757097 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
63757125 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
63757153 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63757167 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:63762253 original size:44 final size:47
Alignment explanation
Indices: 63762203--63762324 Score: 135
Period size: 44 Copynumber: 2.7 Consensus size: 47
63762193 GTGTATACAT
* *
63762203 GCTGATGCATGTCCCAGACATGTCTTACGCTAGC-AAGAAAC-T-TA-
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTAA-AAACATCGAG
* * * * * *
63762247 GCTGATGTATGTCCCAAACACGTCTTACACTGGCTAACATCATCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTAAAAACATCGAG
63762294 GCTGATGCATGTCCCAGACATGTCTTACACT
1 GCTGATGCATGTCCCAGACATGTCTTACACT
63762325 GGCACTCACC
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
44 31 0.49
45 3 0.05
46 1 0.02
47 28 0.44
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (47 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTAAAAACATCGAG
Found at i:63765552 original size:57 final size:57
Alignment explanation
Indices: 63765464--63765577 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
63765454 CTCGGGGCAC
63765464 AGGCTATAACCTTGCCTTTTTGCATTAGCACACTCCCTAAACCGTTTAGAGAGGCGT
1 AGGCTATAACCTTGCCTTTTTGCATTAGCACACTCCCTAAACCGTTTAGAGAGGCGT
*
63765521 AGGCTATAACCTTGCCTTTTTGCATTAGCACACTCCCTAAACCGTTTAGGGAGGCGT
1 AGGCTATAACCTTGCCTTTTTGCATTAGCACACTCCCTAAACCGTTTAGAGAGGCGT
63765578 CATTAAAAAC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (57 bp):
AGGCTATAACCTTGCCTTTTTGCATTAGCACACTCCCTAAACCGTTTAGAGAGGCGT
Found at i:63767325 original size:43 final size:43
Alignment explanation
Indices: 63767264--63767349 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
63767254 ATTTATTTCG
63767264 GGACAATCTCAGATGAAGTGATCTAACGACCCACACTTGAAAC
1 GGACAATCTCAGATGAAGTGATCTAACGACCCACACTTGAAAC
**
63767307 GGACAATCTGGGATGAAGTGATCTAACGACCCACACTTGAAAC
1 GGACAATCTCAGATGAAGTGATCTAACGACCCACACTTGAAAC
63767350 AGCCCCTATC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (43 bp):
GGACAATCTCAGATGAAGTGATCTAACGACCCACACTTGAAAC
Found at i:63769991 original size:94 final size:93
Alignment explanation
Indices: 63769704--63770054 Score: 320
Period size: 94 Copynumber: 3.7 Consensus size: 93
63769694 TTGCCGCTGC
* * * * *
63769704 CATGTCCCAGACATGGTCTTACGCTAGCTATCTCCA-TCGAGGTCGATGCCATGTCCCAGACATG
1 CATGTCCCAGACAT-GTCTTACACTAGC-A-CTCAACTCTA-GCCGATGCCATGTCCCAGACATA
* * *
63769768 GTCTTACACTAGCTCTCGTGTATATGT-GCTGATG
62 GTCTTACACTGGCTATCATG---ATGTAGCTGATG
** * *
63769802 CATGTCCCAGACATGTCTTACACTAGCACGAAACTC-AGCCGATG-CATGTCCTAGACA-CGTCT
1 CATGTCCCAGACATGTCTTACACTAGCACTCAACTCTAGCCGATGCCATGTCCCAGACATAGTCT
* * *
63769864 TACACTGGCTAACATCATCG-AGGCCGATG
66 TACACTGGCTATCATGAT-GTA-GCTGATG
* * * *
63769893 CATGTCCTAGACATGTCTTACACTGGCACTCACCTCTACGCCGATGCCATGTCCCAGACGTAGTC
1 CATGTCCCAGACATGTCTTACACTAGCACTCAACTCTA-GCCGATGCCATGTCCCAGACATAGTC
*
63769958 TTACACGGGCTATCATGATGTAGCTGATG
65 TTACACTGGCTATCATGATGTAGCTGATG
* ** * *
63769987 CATGTCCCAGACATGTCTTACACTAGCCCTCGTCT-TAATGTCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGTCTTACACTAGCACTCAACTCT-A-GCCGATGCCATGTCCCAGACATAGT
63770051 CTTA
64 CTTA
63770055 TACTAGCTCT
Statistics
Matches: 209, Mismatches: 34, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
89 2 0.01
90 1 0.00
91 37 0.18
92 16 0.08
93 20 0.10
94 81 0.39
95 23 0.11
96 3 0.01
97 12 0.06
98 14 0.07
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCAACTCTAGCCGATGCCATGTCCCAGACATAGTCT
TACACTGGCTATCATGATGTAGCTGATG
Found at i:63770038 original size:47 final size:47
Alignment explanation
Indices: 63769704--63770066 Score: 212
Period size: 47 Copynumber: 7.7 Consensus size: 47
63769694 TTGCCGCTGC
* *
63769704 CATGTCCCAGACATGGTCTTACGCTAGCTATCTCCATC--GAGGTCGATG
1 CATGTCCCAGACATGGTCTTACACTAGC--TCT-CATCTTGATGTCGATG
* *
63769752 CCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTAT-ATGTGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTAGCTCTCATCT-TGATGT-C-GATG
* ** * * *
63769802 CATGTCCCAGACAT-GTCTTACACTAGCACGAAAC-TCA-GCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTGATGTCGATG
* * * ** * * *
63769846 CATGTCCTAGACA-CGTCTTACACTGGCTAACATCATCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATC-TTGATGTCGATG
* * * * * *
63769893 CATGTCCTAGACAT-GTCTTACACTGGCACTCACCTCT-ACGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATCT-TGATGTCGATG
* * ** *
63769939 CCATGTCCCAGACGTAGTCTTACAC--GGGCT-ATCATGATGTAGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTGATGT--C-GATG
* * *
63769987 CATGTCCCAGACAT-GTCTTACACTAGCCCTCGTCTTAATGTCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTGATGTCGATG
*
63770033 CCATGTCCCAGACATGGTCTTATACTAGCTCTCA
1 -CATGTCCCAGACATGGTCTTACACTAGCTCTCA
63770067 CATAACCCAA
Statistics
Matches: 248, Mismatches: 43, Indels: 47
0.73 0.13 0.14
Matches are distributed among these distances:
44 31 0.12
45 5 0.02
46 30 0.12
47 81 0.33
48 48 0.19
49 49 0.20
50 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTGATGTCGATG
Found at i:63773123 original size:21 final size:21
Alignment explanation
Indices: 63773093--63773146 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
63773083 GTTCCATTTG
* *
63773093 GTATCGGTAGAACCCGTTAAA
1 GTATCAGTAGAACCCGTCAAA
63773114 GTATCAGTAGAACCCGTCAAA
1 GTATCAGTAGAACCCGTCAAA
* *
63773135 TTATCAATAGAA
1 GTATCAGTAGAA
63773147 GTGCAGGAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.24
Consensus pattern (21 bp):
GTATCAGTAGAACCCGTCAAA
Found at i:63780169 original size:75 final size:75
Alignment explanation
Indices: 63779965--63780157 Score: 323
Period size: 75 Copynumber: 2.6 Consensus size: 75
63779955 TTGATCGCGT
* *
63779965 TCACTCTCGTGTCTCCTCAACCTACTACTGCTTCTCTCTCTCCTATCTCTCTCCCGCTCCCTCTC
1 TCACTCTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCCTATCTCTCTCCCGCTCCCTCTC
*
63780030 TAGCTCACGA
66 AAGCTCACGA
* *
63780040 TCACTCTCGTGCCTCCTCGACCTACTACTGCTCCTCTCTCTCCTATCTCTCTCCCGTTCCCTCTC
1 TCACTCTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCCTATCTCTCTCCCGCTCCCTCTC
*
63780105 AATCTCACGA
66 AAGCTCACGA
*
63780115 TCACTTTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCC
1 TCACTCTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCC
63780158 GGTCTACCTC
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 110 1.00
ACGTcount: A:0.11, C:0.46, G:0.08, T:0.35
Consensus pattern (75 bp):
TCACTCTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCCTATCTCTCTCCCGCTCCCTCTC
AAGCTCACGA
Found at i:63780194 original size:20 final size:20
Alignment explanation
Indices: 63780169--63780227 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
63780159 GTCTACCTCC
63780169 CTCTCTTTCTCCTTTTCCTT
1 CTCTCTTTCTCCTTTTCCTT
63780189 CTCTCTTTC-CC--TT-C-T
1 CTCTCTTTCTCCTTTTCCTT
63780204 CTCTC--TCTCCTTTTCCTT
1 CTCTCTTTCTCCTTTTCCTT
63780222 CTCTCT
1 CTCTCT
63780228 CCTATCCCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 13
0.72 0.00 0.28
Matches are distributed among these distances:
13 2 0.06
14 2 0.06
15 6 0.18
16 3 0.09
17 3 0.09
18 6 0.18
19 2 0.06
20 9 0.27
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (20 bp):
CTCTCTTTCTCCTTTTCCTT
Found at i:63780201 original size:13 final size:13
Alignment explanation
Indices: 63780175--63780207 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
63780165 CTCCCTCTCT
*
63780175 TTCTC-CTTTTCC
1 TTCTCTCTTTCCC
63780187 TTCTCTCTTTCCC
1 TTCTCTCTTTCCC
63780200 TTCTCTCT
1 TTCTCTCT
63780208 CTCTCCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (13 bp):
TTCTCTCTTTCCC
Found at i:63780239 original size:33 final size:32
Alignment explanation
Indices: 63780166--63780309 Score: 105
Period size: 33 Copynumber: 4.4 Consensus size: 32
63780156 CCGGTCTACC
*
63780166 TCCCTCTCTTTCTCCTTTTCCTTCTCTCT-T-
1 TCCCTCTCTCTCTCCTTTTCCTTCTCTCTCTA
63780196 TCCCTTCTCTCTCTCTCCTTTTCCTTCTCTCTCCTA
1 T-CC--CTCTCTCTCTCCTTTTCCTTCTCTCT-CTA
* * * * *
63780232 TCCCTCTCTTTCTCCTTATCTTTTTCTCTTCTT
1 TCCCTCTCTCTCTCCTTTTCCTTCTCTC-TCTA
* * * * *
63780265 TCTCTCTCCCTTTCCTTCTCCCTCTCTCTGCTA
1 TCCCTCTCTCTCTCCTTTTCCTTCTCTCT-CTA
*
63780298 CCCCTC-CTCTCT
1 TCCCTCTCTCTCT
63780310 AAATCCTTAT
Statistics
Matches: 87, Mismatches: 19, Indels: 14
0.73 0.16 0.12
Matches are distributed among these distances:
30 1 0.01
31 2 0.02
32 5 0.06
33 74 0.85
34 1 0.01
35 3 0.03
36 1 0.01
ACGTcount: A:0.02, C:0.46, G:0.01, T:0.51
Consensus pattern (32 bp):
TCCCTCTCTCTCTCCTTTTCCTTCTCTCTCTA
Found at i:63780291 original size:66 final size:66
Alignment explanation
Indices: 63780166--63780303 Score: 163
Period size: 66 Copynumber: 2.1 Consensus size: 66
63780156 CCGGTCTACC
* * *
63780166 TCCCTCTCTTTCTCCTTTTCCTTCTCTCTTTCCCTTCTCTCTCTCTCCTTTTCCTTCTCTCTCCT
1 TCCCTCTCTTTCTCCTTATCCTTCTCTCTTTCCCTTCTCTCTCTCTCCTTCTCCCTCTCTCTCCT
63780231 A
66 A
* * * * *
63780232 TCCCTCTCTTTCTCCTTATCTTTTTCTC-TT-CTTTCTCTCTCCCTTTCCTTCTCCCTCTCTCTG
1 TCCCTCTCTTTCTCCTTATCCTTCTCTCTTTCCCTTCTCTCT--CTCTCCTTCTCCCTCTCTCTC
63780295 CTA
64 CTA
*
63780298 CCCCTC
1 TCCCTC
63780304 CTCTCTAAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
64 9 0.15
65 2 0.03
66 50 0.82
ACGTcount: A:0.02, C:0.46, G:0.01, T:0.51
Consensus pattern (66 bp):
TCCCTCTCTTTCTCCTTATCCTTCTCTCTTTCCCTTCTCTCTCTCTCCTTCTCCCTCTCTCTCCT
A
Found at i:63781243 original size:20 final size:18
Alignment explanation
Indices: 63781206--63781244 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
63781196 TTTATTTTTA
*
63781206 AAAATATTTAAAATTATT
1 AAAATATTTAAAAATATT
63781224 AAAATATTAATAAAAATATT
1 AAAATATT--TAAAAATATT
63781244 A
1 A
63781245 TATTTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
20 10 0.56
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATATTTAAAAATATT
Found at i:63781288 original size:26 final size:27
Alignment explanation
Indices: 63781226--63781276 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
63781216 AAATTATTAA
*
63781226 AATATTAATAAAAATATTATATTTTTT
1 AATATTATTAAAAATATTATATTTTTT
*
63781253 AATATTATTAAACATA-TATATTTT
1 AATATTATTAAAAATATTATATTTT
63781277 ATTATTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (27 bp):
AATATTATTAAAAATATTATATTTTTT
Found at i:63781309 original size:95 final size:98
Alignment explanation
Indices: 63781210--63781431 Score: 276
Period size: 95 Copynumber: 2.3 Consensus size: 98
63781200 TTTTTAAAAA
* * * *
63781210 TATTTAAAATTATTAAAATATTAATAAAAATATTATATTTTTTAATATTATTAAACATATATATT
1 TATTTATAATTATTAAAATATTAATAAAAATATTATATCTTTCAATATTATTAAACATACATATT
*
63781275 TTATTATTT-TATTATA-TT-GATAATAAATT-T
66 TAATTATTTATATT-TAGTTAGATAATAAATTAT
* *
63781305 TATTT-TTATTTTTAAAAATATTAATAAAAATATTATATCTTTCAATATTATTAAACATACATAT
1 TATTTATAATTATT-AAAATATTAATAAAAATATTATATCTTTCAATATTATTAAACATACATAT
*
63781369 TTAATTATTTATATTTAGTTATATAATAAATTAT
65 TTAATTATTTATATTTAGTTAGATAATAAATTAT
**
63781403 T-TTTATAATTAATATAATTTATTAATAAA
1 TATTTATAATT-AT-TAAAATATTAATAAA
63781432 TTATTTAATA
Statistics
Matches: 107, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
94 5 0.05
95 63 0.59
96 6 0.06
97 13 0.12
98 6 0.06
99 13 0.12
100 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (98 bp):
TATTTATAATTATTAAAATATTAATAAAAATATTATATCTTTCAATATTATTAAACATACATATT
TAATTATTTATATTTAGTTAGATAATAAATTAT
Found at i:63781320 original size:56 final size:55
Alignment explanation
Indices: 63781171--63781325 Score: 151
Period size: 61 Copynumber: 2.8 Consensus size: 55
63781161 AGCTTAATAA
63781171 TATTATATTGATAATAAATTTTATTTTTATTTTT-AAA-A-ATATTTAAAATTAT
1 TATTATATTGATAATAAATTTTATTTTTATTTTTAAAATATATATTTAAAATTAT
** * **
63781223 TAAAATATTAATAA-AAATATTATATTTTTTAATATTATTAAACATATATATTTTATTATT-T
1 TATTATATTGATAATAAAT-TT-TA-TTTTT-AT-TT-TTAAA-ATATATA-TTTAAAATTAT
63781284 TATTATATTGATAATAAATTTTATTTTTATTTTTAAAA-ATAT
1 TATTATATTGATAATAAATTTTATTTTTATTTTTAAAATATAT
63781326 TAATAAAAAT
Statistics
Matches: 83, Mismatches: 8, Indels: 22
0.73 0.07 0.19
Matches are distributed among these distances:
51 4 0.05
52 13 0.16
53 2 0.02
54 9 0.11
55 3 0.04
56 7 0.08
57 4 0.05
58 4 0.05
59 6 0.07
60 3 0.04
61 17 0.20
62 11 0.13
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (55 bp):
TATTATATTGATAATAAATTTTATTTTTATTTTTAAAATATATATTTAAAATTAT
Found at i:63781411 original size:16 final size:16
Alignment explanation
Indices: 63781390--63781437 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
63781380 TATTTAGTTA
63781390 TATAATAAATTATTTT
1 TATAATAAATTATTTT
* *
63781406 TATAATTAA-TATAATT
1 TATAATAAATTAT-TTT
63781422 TATTAATAAATTATTT
1 TA-TAATAAATTATTT
63781438 AATATTTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
15 3 0.12
16 12 0.48
17 7 0.28
18 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATAATAAATTATTTT
Found at i:63781448 original size:33 final size:34
Alignment explanation
Indices: 63781387--63781467 Score: 85
Period size: 34 Copynumber: 2.4 Consensus size: 34
63781377 TTATATTTAG
*
63781387 TTATATAATAAATTATTTTTATAATTAA-TATAAT
1 TTAT-TAATAAATTATTTATATAATTAATTATAAT
* * *
63781421 TTATTAATAAATTATTTA-ATATTTTAATTTTATT
1 TTATTAATAAATTATTTATATA-ATTAATTATAAT
*
63781455 TTAATAATAAATT
1 TTATTAATAAATT
63781468 TTAAAAATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
32 3 0.08
33 17 0.43
34 20 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (34 bp):
TTATTAATAAATTATTTATATAATTAATTATAAT
Found at i:63781492 original size:16 final size:17
Alignment explanation
Indices: 63781456--63781492 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
63781446 AATTTTATTT
63781456 TAATAATAAATTTTAAA
1 TAATAATAAATTTTAAA
63781473 -AATAATAAA-TTTAAA
1 TAATAATAAATTTTAAA
63781488 TAATA
1 TAATA
63781493 TTATTCAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATAATAAATTTTAAA
Found at i:63782325 original size:16 final size:15
Alignment explanation
Indices: 63782292--63782328 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
63782282 AGCACTCAAA
63782292 TTTTCAACATTTATT
1 TTTTCAACATTTATT
*
63782307 TTTTCAACATTTAAT
1 TTTTCAACATTTATT
63782322 TTTTCAA
1 TTTTCAA
63782329 TTTATCAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.30, C:0.14, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTTCAACATTTATT
Found at i:63782596 original size:8 final size:8
Alignment explanation
Indices: 63782585--63782612 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
63782575 TTAATGATAA
63782585 TTTTTTAT
1 TTTTTTAT
63782593 TTTTTTAT
1 TTTTTTAT
63782601 TTTTTTAT
1 TTTTTTAT
63782609 TTTT
1 TTTT
63782613 AAAAATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTAT
Found at i:63789395 original size:14 final size:14
Alignment explanation
Indices: 63789372--63789404 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
63789362 ATGGAAATTC
*
63789372 GATTTCTACTAGTT
1 GATTTATACTAGTT
63789386 GATTTATACTAGTT
1 GATTTATACTAGTT
63789400 GATTT
1 GATTT
63789405 CCTAACATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.09, G:0.15, T:0.52
Consensus pattern (14 bp):
GATTTATACTAGTT
Found at i:63790017 original size:26 final size:26
Alignment explanation
Indices: 63789966--63790017 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
63789956 TTTTCTTCAT
*
63789966 GTTTTTAATAACATAAAGAGCTATGA
1 GTTTTTAATAACATAAAGAGCAATGA
*
63789992 GTTTTTGAATAACATAAA-ATCAATGA
1 GTTTTT-AATAACATAAAGAGCAATGA
63790018 TTATGGTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (26 bp):
GTTTTTAATAACATAAAGAGCAATGA
Found at i:63790450 original size:34 final size:35
Alignment explanation
Indices: 63790406--63790480 Score: 95
Period size: 34 Copynumber: 2.2 Consensus size: 35
63790396 TTCTTAATAA
*
63790406 TAAT-ATTATATTAA-AATTGTTATTAAATAT-TA-T
1 TAATAATTATATTAAGAA-TATTATTAAAT-TGTATT
63790439 TAATAATTATATTAAGAATATTATTAAATTGTATT
1 TAATAATTATATTAAGAATATTATTAAATTGTATT
63790474 TAATAAT
1 TAATAAT
63790481 AATTATGTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
33 5 0.14
34 22 0.59
35 10 0.27
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (35 bp):
TAATAATTATATTAAGAATATTATTAAATTGTATT
Found at i:63790560 original size:25 final size:26
Alignment explanation
Indices: 63790511--63790560 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
63790501 AAATTATTTT
*
63790511 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
63790537 TTATTAAAATTTA-ATAACAATAAT
1 TTATTAAAATATATATAACAATAAT
63790561 TAACTATCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:63790823 original size:16 final size:16
Alignment explanation
Indices: 63790791--63790825 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
63790781 TGGTTGGGGG
*
63790791 AATGGAATAGGACTGT
1 AATGGAATAGAACTGT
*
63790807 AATGGAATAGAATTGT
1 AATGGAATAGAACTGT
63790823 AAT
1 AAT
63790826 TAGTAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.03, G:0.26, T:0.29
Consensus pattern (16 bp):
AATGGAATAGAACTGT
Found at i:63791478 original size:26 final size:27
Alignment explanation
Indices: 63791451--63791540 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
63791441 ATAAAAAATC
63791451 AAAACTCATAGTTTTTTATGTTATTCA
1 AAAACTCATAGTTTTTTATGTTATTCA
*
63791478 AAAAC-CATAATTCTTGATTTTATGTTATTCA
1 AAAACTCAT-A--GTT--TTTTATGTTATTCA
* * * *
63791509 AAAACTTATAGTTCTTTATATTATTAA
1 AAAACTCATAGTTTTTTATGTTATTCA
63791536 AAAAC
1 AAAAC
63791541 ATGAAGAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
26 3 0.06
27 22 0.43
29 4 0.08
31 20 0.39
32 2 0.04
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44
Consensus pattern (27 bp):
AAAACTCATAGTTTTTTATGTTATTCA
Found at i:63792162 original size:25 final size:25
Alignment explanation
Indices: 63792133--63792183 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
63792123 CAAAGGAAAA
**
63792133 TCCTAATCTAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
63792158 TCCTAATAGAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
63792183 T
1 T
63792184 TTATAAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (25 bp):
TCCTAATAGAATTCCTAATTTAAAG
Found at i:63794673 original size:104 final size:104
Alignment explanation
Indices: 63794493--63794716 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
63794483 TGTATATAAA
** * *
63794493 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
63794558 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
63794597 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
63794661 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
63794701 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
63794717 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:63794768 original size:71 final size:72
Alignment explanation
Indices: 63794635--63794786 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
63794625 TCATTGGTGG
* *
63794635 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
63794700 GAGGGGT
66 GAGGGGT
***
63794707 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
63794771 GAGGGGT
66 GAGGGGT
63794778 TGCTAAGTG
1 TGCTAAGTG
63794787 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:63802163 original size:26 final size:26
Alignment explanation
Indices: 63802128--63802178 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
63802118 AATGTGAAAG
*
63802128 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
63802154 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
63802179 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:63802190 original size:103 final size:103
Alignment explanation
Indices: 63802050--63802271 Score: 374
Period size: 103 Copynumber: 2.2 Consensus size: 103
63802040 TGTATATAAA
** * *
63802050 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
63802114 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
63802153 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
63802218 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
63802256 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
63802272 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
103 111 0.99
104 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.32
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:63802323 original size:70 final size:72
Alignment explanation
Indices: 63802191--63802341 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
63802181 TCATTGGTGG
* *
63802191 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
63802255 GAGGGGT
66 GAGGGGT
***
63802262 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
63802326 GAGGGGT
66 GAGGGGT
63802333 TGCTAAGTG
1 TGCTAAGTG
63802342 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 24 0.32
71 50 0.68
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:63807143 original size:25 final size:25
Alignment explanation
Indices: 63807114--63807164 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
63807104 CAAAGGAAAA
**
63807114 TCCTAATCTAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
63807139 TCCTAATAGAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
63807164 T
1 T
63807165 TTATAAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (25 bp):
TCCTAATAGAATTCCTAATTTAAAG
Found at i:63808341 original size:30 final size:30
Alignment explanation
Indices: 63808248--63808344 Score: 122
Period size: 30 Copynumber: 3.2 Consensus size: 30
63808238 GTTTAAATAC
* *
63808248 ATAAACCTATAACTTTCCCAGCATATGCTCAT
1 ATAAACCTATACCCTTCCCAGC--ATGCTCAT
* *
63808280 ACAAACTTATACCCTTCCCAGCATGCTCAT
1 ATAAACCTATACCCTTCCCAGCATGCTCAT
* *
63808310 ATAAACCTATACCCTTTCTAGCATGCTCAT
1 ATAAACCTATACCCTTCCCAGCATGCTCAT
63808340 ATAAA
1 ATAAA
63808345 ACTTCAAACC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
30 39 0.68
32 18 0.32
ACGTcount: A:0.34, C:0.30, G:0.06, T:0.30
Consensus pattern (30 bp):
ATAAACCTATACCCTTCCCAGCATGCTCAT
Found at i:63808804 original size:133 final size:129
Alignment explanation
Indices: 63808652--63808891 Score: 374
Period size: 133 Copynumber: 1.8 Consensus size: 129
63808642 GTTTGCCAAT
*
63808652 AGCTAAGAACAATAAAATCAACAAAAGGAGCAGTCAATAAGAATCAAACAGTACAAAAGAAAAAG
1 AGCTAAGAACAATAAAATCAACAAAAGGAGCAATCAATAAGAATCAAACAGTAC---AGAAAAAG
* *
63808717 TAAAAACAGACAAACCCATTTAAATTTGAACTGAAAGAACACAAAAACAAAGATTGTAATTTACA
63 TAAAAACAAACAAACCCATTTAAA-TTGAACTAAAAGAACACAAAAACAAAGATTGTAATTTACA
63808782 AAG
127 AAG
* *
63808785 AGCTAAGAAC-ATCAAAATCAACAAAAGGGGCAATCAATAAGAATCAAATAGTACAGAAAAAGTA
1 AGCTAAGAACAAT-AAAATCAACAAAAGGAGCAATCAATAAGAATCAAACAGTACAGAAAAAGTA
*
63808849 AAAACAAACAAACCCATTTTAATTGAACTAAAAGAACACAAAA
65 AAAACAAACAAACCCATTTAAATTGAACTAAAAGAACACAAAA
63808892 GCGAAGACCG
Statistics
Matches: 100, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
129 20 0.20
130 30 0.30
132 2 0.02
133 48 0.48
ACGTcount: A:0.57, C:0.15, G:0.12, T:0.15
Consensus pattern (129 bp):
AGCTAAGAACAATAAAATCAACAAAAGGAGCAATCAATAAGAATCAAACAGTACAGAAAAAGTAA
AAACAAACAAACCCATTTAAATTGAACTAAAAGAACACAAAAACAAAGATTGTAATTTACAAAG
Found at i:63808932 original size:133 final size:130
Alignment explanation
Indices: 63808654--63808920 Score: 362
Period size: 133 Copynumber: 2.1 Consensus size: 130
63808644 TTGCCAATAG
*
63808654 CTAAGAACAAT-AAAATCAACAAAAGGAGCAGTCAATAAGAATCAAACAGTACAAAAGAAAAAGT
1 CTAAGAAC-ATCAAAATCAACAAAAGGAGCAATCAATAAGAATCAAACAGTAC--AAGAAAAAGT
* * **
63808718 AAAAACAGACAAACCCATTTAAATTTGAACTGAAAGAACACAAAAACAAAGATTGTAATTTACAA
63 AAAAACAAACAAACCCATTTAAATTTGAACTAAAAGAACACAAAAACAAAGACCGTAATTTA-AA
*
63808783 AGAG
127 AGAA
* *
63808787 CTAAGAACATCAAAATCAACAAAAGGGGCAATCAATAAGAATCAAATAGTAC-AGAAAAAGTAAA
1 CTAAGAACATCAAAATCAACAAAAGGAGCAATCAATAAGAATCAAACAGTACAAGAAAAAGTAAA
* * * *
63808851 AACAAACAAACCCATTTTAA-TTGAACTAAAAGAACACAAAAGCGAAGACCGTAGTTT-AAAGAA
66 AACAAACAAACCCATTTAAATTTGAACTAAAAGAACACAAAAACAAAGACCGTAATTTAAAAGAA
63808914 CTAAGAA
1 CTAAGAA
63808921 TAGCTAAATC
Statistics
Matches: 121, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
127 12 0.10
129 31 0.26
130 30 0.25
132 2 0.02
133 46 0.38
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.16
Consensus pattern (130 bp):
CTAAGAACATCAAAATCAACAAAAGGAGCAATCAATAAGAATCAAACAGTACAAGAAAAAGTAAA
AACAAACAAACCCATTTAAATTTGAACTAAAAGAACACAAAAACAAAGACCGTAATTTAAAAGAA
Found at i:63809723 original size:16 final size:16
Alignment explanation
Indices: 63809702--63809765 Score: 50
Period size: 16 Copynumber: 4.4 Consensus size: 16
63809692 TTTGTTTCAC
63809702 TGTAATAGTATAGGGT
1 TGTAATAGTATAGGGT
* * * *
63809718 TGTAATTGAATAGAGC
1 TGTAATAGTATAGGGT
63809734 TGTAAT-GTA-A----
1 TGTAATAGTATAGGGT
63809744 TGTAATAGTATAGGGT
1 TGTAATAGTATAGGGT
63809760 TGTAAT
1 TGTAAT
63809766 TGAATAGAGC
Statistics
Matches: 37, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
10 6 0.16
11 3 0.08
12 1 0.03
14 1 0.03
15 2 0.05
16 24 0.65
ACGTcount: A:0.34, C:0.02, G:0.27, T:0.38
Consensus pattern (16 bp):
TGTAATAGTATAGGGT
Found at i:63809729 original size:21 final size:21
Alignment explanation
Indices: 63809705--63809772 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
63809695 GTTTCACTGT
63809705 AATAGTATAGGGTTGTAATTG
1 AATAGTATAGGGTTGTAATTG
*
63809726 AATAG---AGCTGTAATGTAA-TG
1 AATAGTATAG-GGT--TGTAATTG
63809746 TAATAGTATAGGGTTGTAATTG
1 -AATAGTATAGGGTTGTAATTG
63809768 AATAG
1 AATAG
63809773 AGCTGTAATG
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
18 2 0.05
19 2 0.05
20 2 0.05
21 25 0.68
22 2 0.05
23 2 0.05
24 2 0.05
ACGTcount: A:0.37, C:0.01, G:0.26, T:0.35
Consensus pattern (21 bp):
AATAGTATAGGGTTGTAATTG
Found at i:63809761 original size:42 final size:42
Alignment explanation
Indices: 63809702--63809786 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
63809692 TTTGTTTCAC
63809702 TGTAATAGTATAGGGTTGTAATTGAATAGAGCTGTAATGTAA
1 TGTAATAGTATAGGGTTGTAATTGAATAGAGCTGTAATGTAA
63809744 TGTAATAGTATAGGGTTGTAATTGAATAGAGCTGTAATGTAA
1 TGTAATAGTATAGGGTTGTAATTGAATAGAGCTGTAATGTAA
63809786 T
1 T
63809787 AGAGTTATAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.35, C:0.02, G:0.26, T:0.36
Consensus pattern (42 bp):
TGTAATAGTATAGGGTTGTAATTGAATAGAGCTGTAATGTAA
Found at i:63809779 original size:16 final size:16
Alignment explanation
Indices: 63809718--63809790 Score: 52
Period size: 16 Copynumber: 4.9 Consensus size: 16
63809708 AGTATAGGGT
63809718 TGTAATTGAATAGAGC
1 TGTAATTGAATAGAGC
63809734 TGTAA-TG--TA-A--
1 TGTAATTGAATAGAGC
* * * *
63809744 TGTAATAGTATAGGGT
1 TGTAATTGAATAGAGC
63809760 TGTAATTGAATAGAGC
1 TGTAATTGAATAGAGC
63809776 TGTAA-TGTAATAGAG
1 TGTAATTG-AATAGAG
63809791 TTATAATAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
10 5 0.11
11 1 0.02
12 1 0.02
13 4 0.09
15 4 0.09
16 29 0.66
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (16 bp):
TGTAATTGAATAGAGC
Found at i:63809784 original size:21 final size:21
Alignment explanation
Indices: 63809718--63809786 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
63809708 AGTATAGGGT
63809718 TGTAATTGAATAGAGCTGTAA
1 TGTAATTGAATAGAGCTGTAA
*
63809739 TGTAA-TGTAATAGTATAG-GGT--
1 TGTAATTG-AATAG---AGCTGTAA
63809760 TGTAATTGAATAGAGCTGTAA
1 TGTAATTGAATAGAGCTGTAA
63809781 TGTAAT
1 TGTAAT
63809787 AGAGTTATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 16
0.68 0.04 0.29
Matches are distributed among these distances:
18 2 0.05
19 2 0.05
20 2 0.05
21 26 0.68
22 2 0.05
23 2 0.05
24 2 0.05
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.36
Consensus pattern (21 bp):
TGTAATTGAATAGAGCTGTAA
Found at i:63810484 original size:14 final size:14
Alignment explanation
Indices: 63810465--63810491 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
63810455 ACAAACACAA
63810465 AAAAATACAAAATG
1 AAAAATACAAAATG
63810479 AAAAATACAAAAT
1 AAAAATACAAAAT
63810492 AAATTCACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.07, G:0.04, T:0.15
Consensus pattern (14 bp):
AAAAATACAAAATG
Found at i:63810909 original size:28 final size:30
Alignment explanation
Indices: 63810863--63810922 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 30
63810853 AAAGGACTTG
63810863 AAAATTAAATATAAGTTAACTTTAAT-TTTT
1 AAAATTAAATATAAGTTAA-TTTAATATTTT
* *
63810893 AAAATTATAT-TAA-TTAATTTATTATTTT
1 AAAATTAAATATAAGTTAATTTAATATTTT
63810921 AA
1 AA
63810923 CTATTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 5 0.19
28 10 0.37
29 3 0.11
30 9 0.33
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (30 bp):
AAAATTAAATATAAGTTAATTTAATATTTT
Found at i:63813379 original size:15 final size:16
Alignment explanation
Indices: 63813359--63813391 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
63813349 AGTGAAAAAA
63813359 AAGAAGAAGAAT-AAG
1 AAGAAGAAGAATGAAG
63813374 AAGAAGAAGAATGAAG
1 AAGAAGAAGAATGAAG
63813390 AA
1 AA
63813392 AAATGGTCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.06
Consensus pattern (16 bp):
AAGAAGAAGAATGAAG
Found at i:63818666 original size:19 final size:19
Alignment explanation
Indices: 63818642--63818736 Score: 149
Period size: 19 Copynumber: 5.0 Consensus size: 19
63818632 CTTTAAGGAC
63818642 ATGCAATCTTAGATATGAT
1 ATGCAATCTTAGATATGAT
63818661 ATGCAATCTTAGATATGAT
1 ATGCAATCTTAGATATGAT
63818680 A--CAATCTTAGATATGAT
1 ATGCAATCTTAGATATGAT
*
63818697 ATGCAATCTTAAATATGAT
1 ATGCAATCTTAGATATGAT
63818716 ATGCAATCTTGAAGATATGAT
1 ATGCAATCTT--AGATATGAT
63818737 CTTGTAATCT
Statistics
Matches: 70, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
17 17 0.24
19 45 0.64
21 8 0.11
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGCAATCTTAGATATGAT
Found at i:63818677 original size:14 final size:15
Alignment explanation
Indices: 63818658--63818695 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
63818648 TCTTAGATAT
63818658 GATATG-CAATCTTA
1 GATATGACAATCTTA
63818672 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
63818689 GATATGA
1 GATATGA
63818696 TATGCAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:63818685 original size:36 final size:37
Alignment explanation
Indices: 63818644--63818736 Score: 143
Period size: 36 Copynumber: 2.5 Consensus size: 37
63818634 TTAAGGACAT
*
63818644 GCAATCTTAGATATGATATGCAATCTTAGATATGATA
1 GCAATCTTAGATATGATATGCAATCTTAAATATGATA
63818681 -CAATCTTAGATATGATATGCAATCTTAAATATGATA
1 GCAATCTTAGATATGATATGCAATCTTAAATATGATA
63818717 TGCAATCTTGAAGATATGAT
1 -GCAATCTT--AGATATGAT
63818737 CTTGTAATCT
Statistics
Matches: 51, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
36 35 0.69
38 7 0.14
40 9 0.18
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (37 bp):
GCAATCTTAGATATGATATGCAATCTTAAATATGATA
Found at i:63820507 original size:24 final size:24
Alignment explanation
Indices: 63820480--63820527 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
63820470 TGTAATTTTA
63820480 AATCTTGAAAAATTTTTAATCATT
1 AATCTTGAAAAATTTTTAATCATT
63820504 AATCTTGAAAAATTTTTAATCATT
1 AATCTTGAAAAATTTTTAATCATT
63820528 CTTTTTGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (24 bp):
AATCTTGAAAAATTTTTAATCATT
Found at i:63826901 original size:209 final size:208
Alignment explanation
Indices: 63826540--63826959 Score: 625
Period size: 209 Copynumber: 2.0 Consensus size: 208
63826530 ACTGTTTTGC
* * * *
63826540 AAATTTTTAAGTTTTTCTAAAACTTTCTGATTTGATTCAATTTGATCCTGGATCATCCTCAAATT
1 AAATTTTCAAGATTTTCTAAAACTTTCTGATTTGATGCAATTTGATCCTAGATCATCCTCAAATT
*
63826605 GTTTTTTAGGGCTCCATAAGTTCGATTTAAGGTCCATAAGTGATTTATTCTATAAATTGATTTCG
66 GTTTTTTAGGGCTCCATAAGTTCGATTTAAGGTCCATAAGTGATTTATTCTATAAATTGATTTCA
* *
63826670 TTTGTTATATGTTTGTT-A-ATT-ATTTGTTTAATTGGTCTGAAATGAAATGAAATGTTCTATAT
131 TTTGTTACATGTTTGTTAATATTAATTTGGTTAATTGGTC-----TGAAATGAAATGTTCTATAT
*
63826732 TGCTTAGTAACACTCTGT
191 TGCTCAGTAACACTCTGT
*
63826750 AAATTTTCAAGATTTTCTAAAACTTTTTGATTTGATGCAATTTGATCCTAGATC-TCCTCAAATT
1 AAATTTTCAAGATTTTCTAAAACTTTCTGATTTGATGCAATTTGATCCTAGATCATCCTCAAATT
* * *
63826814 GTTTTTTAGGGCTCCGT-ATTTCGATTTAAGGTGCATAAGTGTATTTATTCTATAAATTGATTTC
66 GTTTTTTAGGGCTCCATAAGTTCGATTTAAGGTCCATAAGTG-ATTTATTCTATAAATTGATTTC
63826878 ATTTGTTACATGTTTGTTAATTATTAATTTGGTTAATTGGTCTGAAATGAAATGTTCTATATTGC
130 ATTTGTTACATGTTTGTTAA-TATTAATTTGGTTAATTGGTCTGAAATGAAATGTTCTATATTGC
*
63826943 TCGGTAACACTCTGT
194 TCAGTAACACTCTGT
63826958 AA
1 AA
63826960 CCTTAATCCA
Statistics
Matches: 192, Mismatches: 13, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
208 60 0.31
209 64 0.33
210 50 0.26
212 3 0.02
213 15 0.08
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.46
Consensus pattern (208 bp):
AAATTTTCAAGATTTTCTAAAACTTTCTGATTTGATGCAATTTGATCCTAGATCATCCTCAAATT
GTTTTTTAGGGCTCCATAAGTTCGATTTAAGGTCCATAAGTGATTTATTCTATAAATTGATTTCA
TTTGTTACATGTTTGTTAATATTAATTTGGTTAATTGGTCTGAAATGAAATGTTCTATATTGCTC
AGTAACACTCTGT
Found at i:63838298 original size:9 final size:9
Alignment explanation
Indices: 63838281--63838310 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
63838271 GTTCATGGAT
*
63838281 TGAATTGAA
1 TGAAATGAA
63838290 TGAAATGAA
1 TGAAATGAA
63838299 TGAAATGAA
1 TGAAATGAA
63838308 TGA
1 TGA
63838311 TTGAATGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.23, T:0.27
Consensus pattern (9 bp):
TGAAATGAA
Found at i:63839989 original size:19 final size:19
Alignment explanation
Indices: 63839965--63840002 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
63839955 ATATCTGTGA
63839965 TTCTGTATTGTCT-GTAATG
1 TTCTGTATT-TCTGGTAATG
*
63839984 TTCTGTCTTTCTGGTAATG
1 TTCTGTATTTCTGGTAATG
63840003 CCCCTTACCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.13, C:0.13, G:0.21, T:0.53
Consensus pattern (19 bp):
TTCTGTATTTCTGGTAATG
Found at i:63852645 original size:46 final size:46
Alignment explanation
Indices: 63852595--63852770 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
63852585 TGGTTGAGCA
63852595 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
63852641 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* * * *
63852686 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
63852734 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63852771 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 6 0.05
45 3 0.03
46 63 0.57
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:63852751 original size:93 final size:93
Alignment explanation
Indices: 63852592--63852763 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
63852582 GGATGGTTGA
* * *
63852592 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63852657 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
63852685 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63852750 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63852764 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63864616 original size:40 final size:40
Alignment explanation
Indices: 63864538--63864761 Score: 267
Period size: 40 Copynumber: 5.5 Consensus size: 40
63864528 ACCCAAGTAT
* * *
63864538 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGAACAAATGC
* **
63864577 CTTCGGGTCTTAGCCCGGATATAGTCACTAGAATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGAACAAATGC
63864617 CTTCGGGACTTAGCCCGGATATAGTCACTAGCAA-AAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAG-AACAAATGC
* *
63864657 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GAACAAATGC
* * *
63864700 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGAACAAATGC
63864740 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
63864762 CATCCGAATA
Statistics
Matches: 163, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 12 0.07
40 114 0.70
41 3 0.02
42 1 0.01
43 33 0.20
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGAACAAATGC
Found at i:63864722 original size:83 final size:80
Alignment explanation
Indices: 63864538--63864761 Score: 292
Period size: 83 Copynumber: 2.8 Consensus size: 80
63864528 ACCCAAGTAT
* * *
63864538 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
63864601 TCACTAGAATGAATGC
65 TCACTAGAACAAATGC
* *
63864617 CTTCGGGACTTAGCCCGGATATAGTCACTAGCAAAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
63864681 CAACTACTCGCACAAATGC
66 C-ACTA---GAACAAATGC
* *
63864700 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
63864762 CATCCGAATA
Statistics
Matches: 127, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
79 13 0.10
80 48 0.38
81 1 0.01
83 65 0.51
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGAACAAATGC
Found at i:63872759 original size:40 final size:40
Alignment explanation
Indices: 63872698--63872773 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
63872688 CGGTACTCTA
* * **
63872698 TGGTGTGTAGTGTTGGATGGGTTGATTTAATCCCCATATT
1 TGGTGTGTAGGGATGGATGGGTCAATTTAATCCCCATATT
* *
63872738 TGGTGTGTAGGGATGGGTGGGTCAATTTTATCCCCA
1 TGGTGTGTAGGGATGGATGGGTCAATTTAATCCCCA
63872774 CATGGTGTGT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.17, C:0.12, G:0.33, T:0.38
Consensus pattern (40 bp):
TGGTGTGTAGGGATGGATGGGTCAATTTAATCCCCATATT
Found at i:63873371 original size:34 final size:34
Alignment explanation
Indices: 63873328--63873430 Score: 116
Period size: 37 Copynumber: 2.9 Consensus size: 34
63873318 TTTTAATTAA
63873328 ACTCATTTTAGTTAATTGAGTTGCTGGAATAAAT
1 ACTCATTTTAGTTAATTGAGTTGCTGGAATAAAT
*
63873362 ACTCATTTTAGTTATTAATTGAGTTGCTAGAATAAAT
1 ACTCATTTTAG---TTAATTGAGTTGCTGGAATAAAT
* * * * * *
63873399 GCTTATCTTAGTTAATTTAGATGTTGGAATAA
1 ACTCATTTTAGTTAATTGAGTTGCTGGAATAA
63873431 TTTATTGTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
34 28 0.48
37 30 0.52
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.43
Consensus pattern (34 bp):
ACTCATTTTAGTTAATTGAGTTGCTGGAATAAAT
Found at i:63877505 original size:37 final size:37
Alignment explanation
Indices: 63877454--63877533 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
63877444 CTTATTACGA
* *
63877454 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
* *
63877491 GGTCTTACCCGGACAAAATTCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
63877528 AGTCTT
1 AGTCTT
63877534 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:63877730 original size:47 final size:47
Alignment explanation
Indices: 63877652--63878156 Score: 868
Period size: 47 Copynumber: 10.7 Consensus size: 47
63877642 CCCTTCGGGA
* * * * * * *
63877652 CTTATCACATTTATACATTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63877699 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63877746 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63877793 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63877840 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63877887 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63877934 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63877981 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63878028 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63878075 CTTATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63878122 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
63878157 AGAATCCTAA
Statistics
Matches: 440, Mismatches: 17, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
46 1 0.00
47 439 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63884000 original size:42 final size:42
Alignment explanation
Indices: 63883921--63884012 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
63883911 TCCGAGACGT
*
63883921 GGTCTTACATGTAATCAAACATCGATGCCACTGTCCCAAACA
1 GGTCTTACATGAAATCAAACATCGATGCCACTGTCCCAAACA
* * *
63883963 GGATCTTACATGAAATCAGATA-CGATGCCGA-TGTCCCAGACA
1 GG-TCTTACATGAAATCAAACATCGATGCC-ACTGTCCCAAACA
63884005 GGTCTTAC
1 GGTCTTAC
63884013 GCGTAAAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
41 6 0.14
42 21 0.48
43 17 0.39
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
GGTCTTACATGAAATCAAACATCGATGCCACTGTCCCAAACA
Found at i:63885619 original size:11 final size:12
Alignment explanation
Indices: 63885593--63885626 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
63885583 GGACAAGGGC
63885593 AAAGGCAAAGGA
1 AAAGGCAAAGGA
63885605 AAAGGCAAA-GA
1 AAAGGCAAAGGA
*
63885616 AAAGGCTAAGG
1 AAAGGCAAAGG
63885627 CTAAGGCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.56, C:0.09, G:0.32, T:0.03
Consensus pattern (12 bp):
AAAGGCAAAGGA
Found at i:63889421 original size:12 final size:12
Alignment explanation
Indices: 63889404--63889433 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
63889394 TCAAAGAGTT
63889404 ACACGGGCAGGG
1 ACACGGGCAGGG
*
63889416 ACACGGGCTGGG
1 ACACGGGCAGGG
63889428 ACACGG
1 ACACGG
63889434 CCATGTCACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.27, G:0.47, T:0.03
Consensus pattern (12 bp):
ACACGGGCAGGG
Found at i:63890870 original size:140 final size:138
Alignment explanation
Indices: 63890592--63890997 Score: 643
Period size: 140 Copynumber: 2.9 Consensus size: 138
63890582 GAGAACATAG
* *
63890592 ATATAATTAATATATAAATTTGATTCATGCAAAATATTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATT
* ** * * *
63890657 AATATAAATAGTTATATTAATT-ATTTTTTTCAAAATGTAAAAGACATGGAAATTAATATTATTT
66 AATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTTA
63890721 TGGAAAGA
131 TGGAAAGA
* *
63890729 ATATAATTAATATATTAATTTGATTCATACAAAATATTAATTGTATTTATATTTTACTGAATTTA
1 ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTA--TATATTTTACTAAATTTA
*
63890794 TTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGAAATGGAAATTAATATTCT
64 TTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCT
63890859 TATGGAAAGA
129 TATGGAAAGA
* *
63890869 ATATAATTAATATATGAATTTGATTCATACAAAATGTTAATTGTATATATTTTACTAAATTTATT
1 ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATT
* * *
63890934 AATATAAACAGTTATATTAATGAAGTTTGGTCAAAATATAAAAGACATAGAAATTAATATTCTT
66 AATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTT
63890998 TTAGATATAA
Statistics
Matches: 248, Mismatches: 18, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
137 43 0.17
138 79 0.32
139 39 0.16
140 87 0.35
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (138 bp):
ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATT
AATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTTA
TGGAAAGA
Found at i:63891010 original size:138 final size:137
Alignment explanation
Indices: 63890592--63891014 Score: 639
Period size: 138 Copynumber: 3.1 Consensus size: 137
63890582 GAGAACATAG
* *
63890592 ATATAATTAATATATAAATTTGATTCATGCAAAATATTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATT
* * ** * *
63890657 AATATAAATAGTTATATTAATTATTTTTTTCAAAATGTAAAAGACATGGAAATTAATATTATTTT
66 AATATAAACAGTTATATTAATAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
63890722 GGAAAGA
131 GGAAAGA
* *
63890729 ATATAATTAATATATTAATTTGATTCATACAAAATATTAATTGTATTTATATTTTACTGAATTTA
1 ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTA--TATATTTTACTAAATTTA
*
63890794 TTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGAAATGGAAATTAATATTCT
64 TTAATATAAACAGTTATATTAA-TAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCT
*
63890859 TATGGAAAGA
128 TTTGGAAAGA
* *
63890869 ATATAATTAATATATGAATTTGATTCATACAAAATGTTAATTGTATATATTTTACTAAATTTATT
1 ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATT
* *
63890934 AATATAAACAGTTATATTAATGAAGTTTGGTCAAAATATAAAAGACATAGAAATTAATATTCTTT
66 AATATAAACAGTTATATTAAT-AATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
* * *
63890999 TAGATATA
130 TGGAAAGA
63891007 ATATAATT
1 ATATAATT
63891015 CATTTTTCCA
Statistics
Matches: 260, Mismatches: 22, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
137 44 0.17
138 91 0.35
139 37 0.14
140 88 0.34
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.42
Consensus pattern (137 bp):
ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATT
AATATAAACAGTTATATTAATAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
GGAAAGA
Found at i:63894364 original size:28 final size:27
Alignment explanation
Indices: 63894331--63894383 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
63894321 TTAGAATACT
*
63894331 TTAGTTTACTAAAATTACCGAAATACGC
1 TTAGTTT-CTAAAAATACCGAAATACGC
* *
63894359 TTAGTTTGTAAAAATACTGAAATAC
1 TTAGTTTCTAAAAATACCGAAATAC
63894384 CCTCGATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACGC
Found at i:63894370 original size:27 final size:27
Alignment explanation
Indices: 63894340--63894438 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
63894330 TTTAGTTTAC
63894340 TAAAATTACCGAAATACGCTTAG-TTTG
1 TAAAATTACCGAAATAC-CTTAGATTTG
* * * *
63894367 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTAGATTTG
* * *
63894394 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
63894421 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
63894439 CCCGATTTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.10
27 56 0.90
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:63894439 original size:54 final size:54
Alignment explanation
Indices: 63894340--63894446 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
63894330 TTTAGTTTAC
* * *
63894340 TAAAATTACCGAAATACGCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACGCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
63894394 TAAAATTACTGAAATAC-CTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACGCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
63894447 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 7 0.16
54 38 0.84
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACGCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:63894619 original size:27 final size:27
Alignment explanation
Indices: 63894435--63894618 Score: 217
Period size: 27 Copynumber: 6.8 Consensus size: 27
63894425 ATTACCAAAG
*
63894435 TACCCCCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
63894462 TACCCCCGATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
63894489 TAACCC-CGATTTACATAATTACCATTT
1 T-ACCCTCGATTTACAGAATTACCATTT
* *
63894516 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
63894543 TACCCTCGACTTACAGAAGTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * **
63894570 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
63894597 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
63894619 TAGAATACCC
Statistics
Matches: 138, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
26 4 0.03
27 130 0.94
28 4 0.03
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:63894668 original size:53 final size:53
Alignment explanation
Indices: 63894611--63894788 Score: 211
Period size: 53 Copynumber: 3.3 Consensus size: 53
63894601 CTCGATTTAC
* * *
63894611 AAAATTACTAGAATACCCTAGTTTGTAAAATTACTAAAATACCCTTGCTTTGT
1 AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCTTGCTTTGT
* *
63894664 AAAATTA-CATAAATACCCTCAATTTGTAAAATTACCAAAATACCCTAG-TTTGT
1 AAAATTACCA-AAATACCCT-AGTTTGTAAAATTACCAAAATACCCTTGCTTTGT
* * *
63894717 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATA-CCTT-CAATTTGT
1 AAAATTACCAAAATACC-CTAGTTTGTAAAATTACCAAAATACCCTTGC--TTTGT
63894771 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
63894789 CTGATTTACA
Statistics
Matches: 108, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
52 4 0.04
53 53 0.49
54 51 0.47
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCTTGCTTTGT
Found at i:63894683 original size:80 final size:79
Alignment explanation
Indices: 63894597--63894870 Score: 248
Period size: 80 Copynumber: 3.4 Consensus size: 79
63894587 ATTACTGTTT
* * *
63894597 TACCCTCGATTTACAAAATTACTAGAATACCCTAGTTTGTAAAATTACTAAAATACCCTTGCTTT
1 TACCCTCAATTTACAAAATTACCAAAATACCCTAGTTTGTAAAATTAC-AAAATACCCTTGCTTT
*
63894662 GTAAAATTACATAAA
65 GTAAAATTACAGAAA
** *
63894677 TACCCTCAATTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCAC-TGGTT
1 TACCCTCAATTTACAAAATTACCAAAATACCCTAGTTTGTAAAATTA-CAAAATACC-CTTGCTT
* *
63894741 TGTGAAATTACCGAAA
64 TGTAAAATTACAGAAA
* ** *
63894757 TACCTTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTACAGAAATACCCTTGA
1 TACCCTCAATTTACAAAATTACCAAAATA-CCCTAGTTTGTA-AAA-TTACA-AAATACCCTTG-
* **
63894820 CTTTCTAAAAATTATGGAAA
61 CTTTGT-AAAATTACAGAAA
* *** **
63894840 TACCATTGGTTTACAAAATTACTGAAATACC
1 TACCCTCAATTTACAAAATTACCAAAATACC
63894871 TTTGGTTTGT
Statistics
Matches: 161, Mismatches: 24, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
79 2 0.01
80 104 0.65
81 18 0.11
82 6 0.04
83 31 0.19
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (79 bp):
TACCCTCAATTTACAAAATTACCAAAATACCCTAGTTTGTAAAATTACAAAATACCCTTGCTTTG
TAAAATTACAGAAA
Found at i:63894795 original size:27 final size:26
Alignment explanation
Indices: 63894597--63894795 Score: 188
Period size: 27 Copynumber: 7.4 Consensus size: 26
63894587 ATTACTGTTT
** * *
63894597 TACCCTCGATTTACAAAATTACTAGAA
1 TACCCT-GATTTGTAAAATTACCAAAA
*
63894624 TACCCT-AGTTTGTAAAATTACTAAAA
1 TACCCTGA-TTTGTAAAATTACCAAAA
*
63894650 TACCCTTGCTTTGTAAAATTA-CATAAA
1 TACCC-TGATTTGTAAAATTACCA-AAA
*
63894677 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCT-GATTTGTAAAATTACCAAAA
63894704 TACCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTGA-TTTGTAAAATTACCAAAA
* * *
63894730 TACCACTGGTTTGTGAAATTACCGAAA
1 TACC-CTGATTTGTAAAATTACCAAAA
* *
63894757 TACCTTCAATTTGTAAAATTACCAAAA
1 TACCCT-GATTTGTAAAATTACCAAAA
63894784 TACCCCTGATTT
1 TA-CCCTGATTT
63894796 ACAAAGTTAC
Statistics
Matches: 144, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
25 2 0.01
26 45 0.31
27 92 0.64
28 5 0.03
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (26 bp):
TACCCTGATTTGTAAAATTACCAAAA
Found at i:63894811 original size:54 final size:54
Alignment explanation
Indices: 63894659--63894872 Score: 154
Period size: 54 Copynumber: 3.9 Consensus size: 54
63894649 ATACCCTTGC
* * *
63894659 TTTGTAAAATTA-CATAAATACC-CTCAATTTGTA-AAATTACCA-AAATACCCT-AG
1 TTTGTAAAATTACCA-AAATACCACT-GATTTG-ACAAATTA-CAGAAATACCTTCAA
* ** *
63894712 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCTTCAA
1 TTTGTAAAATTACCAAAATACCACTGATTTGACAAATTACAGAAATACCTTCAA
* * *
63894766 TTTGTAAAATTACCAAAATACCCCTGATTT-ACAAAGTTACAGAAATACCCTTGAC
1 TTTGTAAAATTACCAAAATACCACTGATTTGACAAA-TTACAGAAATA-CCTTCAA
* *** * * *
63894821 TTTCTAAAAATTATGGAAATACCATTGGTTT-ACAAAATTACTGAAATACCTT
1 TTTGT-AAAATTACCAAAATACCACTGATTTGAC-AAATTACAGAAATACCTT
63894873 TGGTTTGTAG
Statistics
Matches: 131, Mismatches: 21, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
52 1 0.01
53 40 0.31
54 43 0.33
55 13 0.10
56 31 0.24
57 3 0.02
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGATTTGACAAATTACAGAAATACCTTCAA
Found at i:63894866 original size:27 final size:27
Alignment explanation
Indices: 63894827--63894878 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
63894817 TGACTTTCTA
63894827 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
63894854 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
63894879 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:63894962 original size:27 final size:27
Alignment explanation
Indices: 63894932--63895022 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
63894922 ACCCCTATTA
* *
63894932 GGTAAAAAGACTGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
63894959 GGTAAAGTGACCGTAAAGCCCTTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
63894986 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
63895013 GGTAAAATGA
1 GGTAAAATGA
63895023 TGAATATGCC
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:63896289 original size:20 final size:20
Alignment explanation
Indices: 63896264--63896325 Score: 106
Period size: 20 Copynumber: 3.1 Consensus size: 20
63896254 ATTTTGATAA
63896264 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63896284 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63896304 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
63896324 AC
1 AC
63896326 GTGAGATGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63896437 original size:25 final size:25
Alignment explanation
Indices: 63896381--63896523 Score: 229
Period size: 25 Copynumber: 5.8 Consensus size: 25
63896371 AGGAAGTGCA
63896381 AAAGGGCTTATGCCCCAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
63896404 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
63896429 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
* *
63896454 GAAGGGCTTATGCCCCAGTTACGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
63896479 AAAGGGCTTATGCCCCAGTTAT-AA
1 AAAGGGCTTATGCCCCAGTTATGAT
*
63896503 AAAGGGCTTTTGCCCCAGTTA
1 AAAGGGCTTATGCCCCAGTTA
63896524 CTAAAAGAGG
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
23 22 0.20
24 21 0.19
25 69 0.62
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:63896480 original size:50 final size:49
Alignment explanation
Indices: 63896381--63896551 Score: 240
Period size: 50 Copynumber: 3.5 Consensus size: 49
63896371 AGGAAGTGCA
*
63896381 AAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATATAAAGGGCTTATGCCCCAGTTACGAT
*
63896429 AAAGGGCTTATGCCCCAGTTATGATGAAGGGCTTATGCCCCAGTTACGAT
1 AAAGGGCTTATGCCCCAGTTAT-ATAAAGGGCTTATGCCCCAGTTACGAT
* * *
63896479 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTATATAAAGGGCTTATGCCCCAGTTACGAT
*
63896527 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
63896552 GATAAAGCAG
Statistics
Matches: 111, Mismatches: 8, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
48 31 0.28
49 34 0.31
50 46 0.41
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATATAAAGGGCTTATGCCCCAGTTACGAT
Found at i:63896535 original size:25 final size:23
Alignment explanation
Indices: 63896380--63896550 Score: 200
Period size: 25 Copynumber: 7.0 Consensus size: 23
63896370 GAGGAAGTGC
63896380 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
63896403 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
63896426 GATAAAGGGCTTATGCCCCAGTTAT
1 -A-AAAGGGCTTATGCCCCAGTTAT
* *
63896451 GATGAAGGGCTTATGCCCCAGTTACG
1 -A-AAAGGGCTTATGCCCCAGTTA-T
63896477 ATAAAGGGCTTATGCCCCAGTTAT
1 A-AAAGGGCTTATGCCCCAGTTAT
*
63896501 AAAAAGGGCTTTTGCCCCAGTTACT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
63896526 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63896550 A
1 A
63896551 TGATAAAGCA
Statistics
Matches: 132, Mismatches: 9, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
23 22 0.17
24 31 0.23
25 79 0.60
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:63896778 original size:31 final size:31
Alignment explanation
Indices: 63896740--63896798 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
63896730 TACGTTTACA
63896740 GTAAAGGCTTCGGCCCAGTAATATGAAATAT
1 GTAAAGGCTTCGGCCCAGTAATATGAAATAT
**
63896771 GTAAAGGCTTCGGCCCAGTGTTATGAAA
1 GTAAAGGCTTCGGCCCAGTAATATGAAA
63896799 AATGAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (31 bp):
GTAAAGGCTTCGGCCCAGTAATATGAAATAT
Found at i:63900721 original size:68 final size:64
Alignment explanation
Indices: 63900474--63900726 Score: 183
Period size: 68 Copynumber: 3.9 Consensus size: 64
63900464 CATAATTTTG
* * * * * * *
63900474 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCAC-T-TCATCTCGT
1 GCTCTCTTGT-CTACATGATGTACACATAGCACCACACATGCGACCTAGCTACATAT-ATCTCGT
63900536 A
64 A
* * * * * *
63900537 GCTCTCTTGTCTACATGGTGTCCTTCACCAGGAACCACGCATGCGACCTAGCTACATATATCTCG
1 GCTCTCTTGTCTACATGATGTAC-ACA-TA-GCACCACACATGCGACCTAGCTACATATATCTCG
63900602 TA
63 TA
* * * * *
63900604 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACTTAGCTACATCATAATGTCTC
1 GCTCTCTTGTCTACATGATGTACACATAGCACCACACATGCGACCTAGCTACAT-AT-A--TCTC
63900669 GTA
62 GTA
* * *
63900672 GCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGATGTACACAT-AGCACCACACATGCGACCTAGCTACATA
63900727 CCATCTGTAT
Statistics
Matches: 154, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 23 0.15
65 4 0.03
66 23 0.15
67 33 0.21
68 50 0.32
69 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGATGTACACATAGCACCACACATGCGACCTAGCTACATATATCTCGTA
Found at i:63909133 original size:23 final size:24
Alignment explanation
Indices: 63909047--63909196 Score: 116
Period size: 23 Copynumber: 6.3 Consensus size: 24
63909037 GGACTCACCA
*
63909047 CAGCTCGTA-GGAGCTTACCGATATAT
1 CAGCTCGTATGGAGCTTACTG-T-T-T
* * *
63909073 CAGCTTGTA-AGAGCTTACTATTTT
1 CAGCTCGTATGGAGCTTACT-GTTT
* *
63909097 TAGCTCAT-TGGAGCTTACTGTTT
1 CAGCTCGTATGGAGCTTACTGTTT
63909120 CAGCTCGTAT-GAGCTTACTG-TT
1 CAGCTCGTATGGAGCTTACTGTTT
*
63909142 CAGCTCG-ATGGAGCTTACCGTTT
1 CAGCTCGTATGGAGCTTACTGTTT
* *
63909165 CAGCTC-AATAGAGCTTACTGTTCAT
1 CAGCTCGTATGGAGCTTACTGTT--T
63909190 CAGCTCG
1 CAGCTCG
63909197 AGAGGAGCCT
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
21 2 0.02
22 18 0.18
23 40 0.40
24 16 0.16
25 8 0.08
26 17 0.17
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (24 bp):
CAGCTCGTATGGAGCTTACTGTTT
Found at i:63911827 original size:12 final size:12
Alignment explanation
Indices: 63911810--63911836 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
63911800 ATTCCGAAGT
63911810 ATATATATATAC
1 ATATATATATAC
63911822 ATATATATATAC
1 ATATATATATAC
63911834 ATA
1 ATA
63911837 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Done.