Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 194 of 352
Found at i:63912359 original size:27 final size:28
Alignment explanation
Indices: 63912279--63912373 Score: 108
Period size: 27 Copynumber: 3.5 Consensus size: 28
63912269 CATGAGATTG
* * * *
63912279 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
63912308 GCACT-A--GTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
63912333 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63912360 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
63912374 GACTTAATAT
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
25 11 0.19
26 10 0.17
27 24 0.41
28 8 0.14
29 5 0.09
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63912384 original size:27 final size:27
Alignment explanation
Indices: 63912322--63912386 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
63912312 TAGTGCGAGT
* *
63912322 TTGATTATATAGCACTAAGTGTGCGAG
1 TTGAATATATAGCACTAAGTGTGCGAC
* *
63912349 TTGATTATATAGCACTGAGTGTGCGGAC
1 TTGAATATATAGCACTAAGTGTGC-GAC
63912377 TT-AATATATA
1 TTGAATATATA
63912387 CTTTTGAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 30 0.88
28 4 0.12
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (27 bp):
TTGAATATATAGCACTAAGTGTGCGAC
Found at i:63918493 original size:79 final size:81
Alignment explanation
Indices: 63918384--63918566 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
63918374 CACTCGTTCA
* *
63918384 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
63918447 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
63918464 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
63918527 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
63918543 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
63918567 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:63918566 original size:40 final size:40
Alignment explanation
Indices: 63918364--63918566 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
63918354 CGGAATTTAA
* ** *
63918364 CCGGATATAG-CACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63918403 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63918443 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
63918482 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
63918522 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
63918562 CCGGA
1 CCGGA
63918567 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 41 0.29
40 86 0.61
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:63920393 original size:48 final size:48
Alignment explanation
Indices: 63920269--63920453 Score: 309
Period size: 48 Copynumber: 3.8 Consensus size: 48
63920259 ACACATCGCC
*
63920269 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
63920317 TATATATATTGCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATAT-TT-CACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
63920367 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63920415 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
63920454 TGCATGTTCA
Statistics
Matches: 128, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
48 81 0.63
49 6 0.05
50 41 0.32
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:63920415 original size:98 final size:96
Alignment explanation
Indices: 63920269--63920452 Score: 316
Period size: 98 Copynumber: 1.9 Consensus size: 96
63920259 ACACATCGCC
*
63920269 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTGCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT-TT-CACATT
63920334 -GACCATTCGGCTTTACCACATATGCATATCTCA
64 AG-CCATTCGGCTTTACCACATATGCATATCTCA
*
63920367 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
63920432 CCATTCGGCTTTACCACATAT
66 CCATTCGGCTTTACCACATAT
63920453 ATGCATGTTC
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
96 27 0.33
97 3 0.04
98 53 0.64
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATGCATATCTCA
Found at i:63920502 original size:47 final size:47
Alignment explanation
Indices: 63920423--63920708 Score: 432
Period size: 47 Copynumber: 6.1 Consensus size: 47
63920413 CATACATATT
* * * *
63920423 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
63920470 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
63920517 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
63920564 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
63920611 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
63920658 TCACATTGGTCATTCGG-CTTATCTCATATATACACATTCACA-TCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
63920703 TCACAT
1 TCACAT
63920709 AAAATCCTAA
Statistics
Matches: 220, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 9 0.04
46 21 0.10
47 190 0.86
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:63920543 original size:22 final size:22
Alignment explanation
Indices: 63920516--63920638 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
63920506 GCTCACATTC
63920516 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
63920538 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
63920562 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* *
63920585 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
63920609 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
63920632 ATCACAT
1 ATCACAT
63920639 ATATGCATGT
Statistics
Matches: 75, Mismatches: 10, Indels: 32
0.64 0.09 0.27
Matches are distributed among these distances:
22 22 0.29
23 19 0.25
24 19 0.25
25 15 0.20
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:63920596 original size:141 final size:139
Alignment explanation
Indices: 63920328--63920708 Score: 428
Period size: 141 Copynumber: 2.7 Consensus size: 139
63920318 ATATATATTG
* * * * *
63920328 CACATTGACCATTCGGCTTTA-C-CACATATGCATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTC--ACAT-TCATCACATTGGCCATTC
* * * * * * *
63920390 GGCTTTACCACATATACATATCTCATACATAT-TTCACATTAGCCATTCGGCTTTACCACATATA
62 GGC-TTATCACATAT--ATA-CACATTCACATCATCACATTAGCCATTCGGCCTTACCACACATA
* *
63920454 TGCATGTTCATATTCAC
123 TGCATGCTCACATTCAC
63920471 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGG-C
* ** * *
63920536 TTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
65 TTATCACATATATACACATTCACA-TCATCACATTAGCCATTCGGCCTTACCACACATATGCATG
*
63920601 CTCACATTCAT
129 CTCACATTCAC
* * *
63920612 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGTCATTCGGCT
1 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCT
*
63920677 TATCTCATATATACACATTCACATCATCACAT
66 TATCACATATATACACATTCACATCATCACAT
63920709 AAAATCCTAA
Statistics
Matches: 205, Mismatches: 27, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
139 14 0.07
140 24 0.12
141 102 0.50
142 30 0.15
143 20 0.10
144 4 0.02
145 11 0.05
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (139 bp):
CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCT
TATCACATATATACACATTCACATCATCACATTAGCCATTCGGCCTTACCACACATATGCATGCT
CACATTCAC
Found at i:63924072 original size:25 final size:25
Alignment explanation
Indices: 63924034--63924100 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
63924024 TCCTGTACAT
*
63924034 GTATGCTCATATGAGCTATGAATTG
1 GTATGCTCATATGAGCTATGAATCG
*
63924059 GTATGCTC-TCATGAGCTGTGAATCG
1 GTATGCTCAT-ATGAGCTATGAATCG
*
63924084 GTAAGCTCATATGAGCT
1 GTATGCTCATATGAGCT
63924101 GTGGTGTGTC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 1 0.03
25 35 0.95
26 1 0.03
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (25 bp):
GTATGCTCATATGAGCTATGAATCG
Found at i:63928858 original size:30 final size:31
Alignment explanation
Indices: 63928824--63928881 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
63928814 TATATTATAA
*
63928824 TAATAGTTATATA-TGTATTAATATTTTTAG
1 TAATAGTTATATATTATATTAATATTTTTAG
*
63928854 TAATAGTTATATATTATATTATTATTTT
1 TAATAGTTATATATTATATTAATATTTT
63928882 ATGTATTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 13 0.52
31 12 0.48
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (31 bp):
TAATAGTTATATATTATATTAATATTTTTAG
Found at i:63931145 original size:50 final size:49
Alignment explanation
Indices: 63931085--63931185 Score: 157
Period size: 50 Copynumber: 2.0 Consensus size: 49
63931075 TAAATGCCGA
63931085 AATTATTTAAGCAACTAAAGAAAATTCAAAACAACTTAAATAATTAAACT
1 AATTATTTAAGCAACTAAAGAAAATT-AAAACAACTTAAATAATTAAACT
* * * *
63931135 AATTATTTAAGCAACTAAAGACAATTATAACAACTTAATTAGTTAAACT
1 AATTATTTAAGCAACTAAAGAAAATTAAAACAACTTAAATAATTAAACT
63931184 AA
1 AA
63931186 AATAACCGAA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
49 22 0.47
50 25 0.53
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (49 bp):
AATTATTTAAGCAACTAAAGAAAATTAAAACAACTTAAATAATTAAACT
Found at i:63950627 original size:40 final size:40
Alignment explanation
Indices: 63950575--63950846 Score: 454
Period size: 40 Copynumber: 6.8 Consensus size: 40
63950565 ATAACCACAA
* * * *
63950575 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
63950615 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
63950655 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
63950695 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
63950737 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
63950777 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
63950817 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
63950847 GTATTCAAAT
Statistics
Matches: 219, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
40 179 0.82
42 40 0.18
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:63950766 original size:122 final size:122
Alignment explanation
Indices: 63950575--63950854 Score: 467
Period size: 122 Copynumber: 2.3 Consensus size: 122
63950565 ATAACCACAA
* * * *
63950575 GCACAATTGCCTTCGGGTCTTAACCCGGGTATA-G-CAACTCGCACGAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* *
63950638 CCCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
63950695 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
*
63950760 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
66 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
63950817 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAT-TCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAA
63950855 ATGCTCATGC
Statistics
Matches: 150, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
120 30 0.20
121 5 0.03
122 115 0.77
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (122 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:63953392 original size:39 final size:40
Alignment explanation
Indices: 63953307--63953392 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
63953297 GGACTAAGAT
* *
63953307 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAATC
63953347 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAATC
63953386 CCGAAGG
1 CCGAAGG
63953393 TACTTGGGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
39 15 0.35
40 26 0.60
41 2 0.05
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAATC
Found at i:63955420 original size:26 final size:27
Alignment explanation
Indices: 63955380--63955459 Score: 67
Period size: 25 Copynumber: 2.9 Consensus size: 27
63955370 TCTATTGCCT
*
63955380 TATTCAAAAAGAATTATTTTATTAAAAA
1 TATT-AAAAACAATTATTTTATTAAAAA
* **
63955408 TA-TAAAAATAATT-TACTATT-AAAA
1 TATTAAAAACAATTATTTTATTAAAAA
63955432 TATTAAAAACAACTTTTATTTTATTAAA
1 TATTAAAAACAA---TTATTTTATTAAA
63955460 TGAAACAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
24 6 0.15
25 13 0.32
26 9 0.22
27 1 0.03
28 4 0.10
29 5 0.12
30 2 0.05
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (27 bp):
TATTAAAAACAATTATTTTATTAAAAA
Found at i:63957794 original size:13 final size:13
Alignment explanation
Indices: 63957776--63957800 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63957766 TAGTACAATT
63957776 TTTTTTATTTTTA
1 TTTTTTATTTTTA
63957789 TTTTTTATTTTT
1 TTTTTTATTTTT
63957801 CATGTCTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:63962159 original size:20 final size:21
Alignment explanation
Indices: 63962134--63962187 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
63962124 TAGAATTTGT
63962134 TTTTGAAATTTTTATAAA-TA
1 TTTTGAAATTTTTATAAATTA
* *
63962154 TTTTGAAAATTTGA-AAATTA
1 TTTTGAAATTTTTATAAATTA
*
63962174 TTTTG-TATTTTTAT
1 TTTTGAAATTTTTAT
63962188 TGAAAGAGAC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTTTGAAATTTTTATAAATTA
Found at i:63963200 original size:27 final size:26
Alignment explanation
Indices: 63963145--63963205 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
63963135 ATTTTTCTTG
*
63963145 AAATTTTATTAGGGGTAAAATTGTAA
1 AAATTTTATTAGGGGTAAAATCGTAA
*
63963171 AAATTTTATT-GGGTTGTAAAATCGTCA
1 AAATTTTATTAGGG--GTAAAATCGTAA
63963198 AAATTTTA
1 AAATTTTA
63963206 CTAGAGTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 3 0.10
26 10 0.32
27 18 0.58
ACGTcount: A:0.39, C:0.03, G:0.16, T:0.41
Consensus pattern (26 bp):
AAATTTTATTAGGGGTAAAATCGTAA
Found at i:63978263 original size:55 final size:55
Alignment explanation
Indices: 63978155--63978264 Score: 136
Period size: 55 Copynumber: 2.0 Consensus size: 55
63978145 GTCGAGCCTA
*
63978155 CCAAAACAACACGGGCATGTGACACGCCCGTGTGGAAGAACCATGGGCGAACCTG
1 CCAAAACAACACGGGCATGTGACACGCCCGTGTGGAAGAACCATGGGCAAACCTG
* * *
63978210 CCAAAACAATACGGGCGT-TCGACACGCCCGTGT-G-AGACACCTATGGTCAAACCTG
1 CCAAAACAACACGGGCATGT-GACACGCCCGTGTGGAAGA-ACC-ATGGGCAAACCTG
63978265 TTAAAATTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
53 3 0.06
54 5 0.10
55 40 0.83
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (55 bp):
CCAAAACAACACGGGCATGTGACACGCCCGTGTGGAAGAACCATGGGCAAACCTG
Found at i:63993661 original size:13 final size:13
Alignment explanation
Indices: 63993643--63993667 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63993633 GAATCAGGAT
63993643 GTGTGAAAATTTC
1 GTGTGAAAATTTC
63993656 GTGTGAAAATTT
1 GTGTGAAAATTT
63993668 AATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:64002572 original size:27 final size:27
Alignment explanation
Indices: 64002511--64002587 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
64002501 GGCATATTCA
64002511 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGG
* *
64002538 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAGGGG-TATTACGG
* *
64002565 TCTTTTTACC-TATTAGGGGTATT
1 TCATTTTACCATA-CAGGGGTATT
64002588 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 38 0.90
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGG
Found at i:64002658 original size:27 final size:27
Alignment explanation
Indices: 64002628--64002679 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
64002618 GTAAATCTAC
64002628 AAACC-AAGGATATTTC-AGTAATTTTGT
1 AAACCAAAGG-TATTTCTA-TAATTTTGT
64002655 AAACCAAAGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
64002680 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:64002740 original size:26 final size:27
Alignment explanation
Indices: 64002691--64002809 Score: 102
Period size: 27 Copynumber: 4.4 Consensus size: 27
64002681 AGAAAGTCAA
* * *
64002691 GGGTATTTTTGTAATTGTGT-AAATTAG
1 GGGTATTTTGGTAATT-TCTCAAACTAG
*
64002718 GGGTATTTTGGTAATTT-TCAAA-TTG
1 GGGTATTTTGGTAATTTCTCAAACTAG
* * *
64002743 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTCTCAAACTAG
* *
64002771 TGGTATTTTGATAATTT-TACAAACTAG
1 GGGTATTTTGGTAATTTCT-CAAACTAG
64002798 GGGTATTTTGGT
1 GGGTATTTTGGT
64002810 GATTCTACCC
Statistics
Matches: 74, Mismatches: 13, Indels: 10
0.76 0.13 0.10
Matches are distributed among these distances:
25 3 0.04
26 20 0.27
27 50 0.68
28 1 0.01
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTCTCAAACTAG
Found at i:64002875 original size:27 final size:27
Alignment explanation
Indices: 64002845--64002936 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
64002835 GTAATTTCAC
* *
64002845 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTATA
64002872 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
* * *
64002899 AATCAAGTGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
64002926 AATCGAGGGTA
1 AATCGAGGGTA
64002937 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 56 0.98
28 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.20, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:64008826 original size:43 final size:43
Alignment explanation
Indices: 64008704--64008861 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 43
64008694 ATGTGTTTTT
* * *
64008704 GTGTAAGACCACGTCTAGGATGTTGGCATCG-ACTTATGATTTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGTA-TT-TGATTTAC
*
64008748 GTGTAACACCATGTCTGGGACGTTGGCATCGTATTTGATTT-C
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTTAC
* *
64008790 GTGTAAGACCCTGTCTGGGACAGTT-TCATCGATATTTG-TTTAC
1 GTGTAAGACCATGTCTGGGAC-GTTGGCATCG-TATTTGATTTAC
* * *
64008833 ATGTAAGATCATGTCTAGGACGTTGGCAT
1 GTGTAAGACCATGTCTGGGACGTTGGCAT
64008862 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
42 31 0.32
43 36 0.37
44 29 0.30
45 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTTAC
Found at i:64011241 original size:87 final size:87
Alignment explanation
Indices: 64011095--64011268 Score: 330
Period size: 87 Copynumber: 2.0 Consensus size: 87
64011085 TCGAAGTTTC
* *
64011095 CATTGAGTTAGTATCAGGAACATCACTGATATCGATAGCACTGTAAAGAATTGCTCCCATAGAGT
1 CATTGAGTTAGTATCAGGAACATCACTGATATCGATAGCACCGTAAAGAATGGCTCCCATAGAGT
64011160 TGAAAGAGTTGAAAGCAAAGTT
66 TGAAAGAGTTGAAAGCAAAGTT
64011182 CATTGAGTTAGTATCAGGAACATCACTGATATCGATAGCACCGTAAAGAATGGCTCCCATAGAGT
1 CATTGAGTTAGTATCAGGAACATCACTGATATCGATAGCACCGTAAAGAATGGCTCCCATAGAGT
64011247 TGAAAGAGTTGAAAGCAAAGTT
66 TGAAAGAGTTGAAAGCAAAGTT
64011269 GCAAGAGTTG
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 85 1.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (87 bp):
CATTGAGTTAGTATCAGGAACATCACTGATATCGATAGCACCGTAAAGAATGGCTCCCATAGAGT
TGAAAGAGTTGAAAGCAAAGTT
Found at i:64013414 original size:40 final size:40
Alignment explanation
Indices: 64013346--64013604 Score: 400
Period size: 40 Copynumber: 6.5 Consensus size: 40
64013336 AACCCAAGTA
* *
64013346 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
64013385 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
64013425 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
64013465 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
64013505 CCTTCGGGACTTATCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
64013545 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
64013584 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
64013605 GTCATCCGAA
Statistics
Matches: 207, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 35 0.17
40 171 0.83
41 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:64019374 original size:42 final size:41
Alignment explanation
Indices: 64019316--64019479 Score: 184
Period size: 42 Copynumber: 3.9 Consensus size: 41
64019306 TTAGGGTTAT
* *
64019316 TGAGATTACATGTAAGACCATATTTGGGATATGGCATCGATA
1 TGAGATT-CATGTAAGACCATATCTAGGATATGGCATCGATA
* * *
64019358 TGAGACTTCATATAAGACCATATCTAGGATATAGCATCGATG
1 TGAGA-TTCATGTAAGACCATATCTAGGATATGGCATCGATA
* * * *
64019400 TGAGATTTCGTGTAAGACCATAGCTAGGCTATTGACATCGATA
1 TGAGA-TTCATGTAAGACCATATCTAGGATA-TGGCATCGATA
* *
64019443 TAAGATCCCATGTAAGACCATATCTAGGATATGGCAT
1 TGAGAT-TCATGTAAGACCATATCTAGGATATGGCAT
64019480 TGGTATATTA
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 66 0.66
43 34 0.34
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (41 bp):
TGAGATTCATGTAAGACCATATCTAGGATATGGCATCGATA
Found at i:64021779 original size:20 final size:21
Alignment explanation
Indices: 64021754--64021793 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
64021744 TCTTAGAAAC
*
64021754 AGGGC-ACGCGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
64021774 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
64021794 CCATTAGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.17, C:0.30, G:0.42, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:64025516 original size:20 final size:21
Alignment explanation
Indices: 64025491--64025557 Score: 104
Period size: 20 Copynumber: 3.3 Consensus size: 21
64025481 ATTTTGATAT
64025491 ACATGAT-TGATATGATATGC
1 ACATGATATGATATGATATGC
64025511 ACATGATATG-TATGATATGC
1 ACATGATATGATATGATATGC
*
64025531 ACATGATCT-ATATGATATGC
1 ACATGATATGATATGATATGC
64025551 ACATGAT
1 ACATGAT
64025558 GTATTCATAA
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:64025518 original size:11 final size:11
Alignment explanation
Indices: 64025502--64025557 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
64025492 CATGATTGAT
64025502 ATGATATGCAC
1 ATGATATGCAC
*
64025513 ATGATATG--T
1 ATGATATGCAC
64025522 ATGATATGCAC
1 ATGATATGCAC
* *
64025533 ATGATCT--AT
1 ATGATATGCAC
64025542 ATGATATGCAC
1 ATGATATGCAC
64025553 ATGAT
1 ATGAT
64025558 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:64025648 original size:23 final size:24
Alignment explanation
Indices: 64025607--64025663 Score: 89
Period size: 23 Copynumber: 2.4 Consensus size: 24
64025597 GAGGAAGTAC
*
64025607 AAAAGGGCTTATGCCCCAGTTTTT
1 AAAAGGGCTTATGCCCCAGTTATT
64025631 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
64025654 AAAAGAGGCT
1 AAAAG-GGCT
64025664 AGGCCTCTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 17 0.55
24 14 0.45
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:64033544 original size:20 final size:20
Alignment explanation
Indices: 64033519--64033585 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
64033509 ATTTTGATAT
64033519 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
64033539 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
64033559 ACATGATCTGTATGATATGC
1 ACATGATATGTATGATATGC
64033579 ACATGAT
1 ACATGAT
64033586 GTATTCATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:64033546 original size:11 final size:11
Alignment explanation
Indices: 64033530--64033585 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
64033520 CATGATTGAT
64033530 ATGATATGCAC
1 ATGATATGCAC
*
64033541 ATGATATG--T
1 ATGATATGCAC
64033550 ATGATATGCAC
1 ATGATATGCAC
* *
64033561 ATGATCTG--T
1 ATGATATGCAC
64033570 ATGATATGCAC
1 ATGATATGCAC
64033581 ATGAT
1 ATGAT
64033586 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:64033662 original size:24 final size:24
Alignment explanation
Indices: 64033635--64033715 Score: 119
Period size: 24 Copynumber: 3.4 Consensus size: 24
64033625 GAGGAAGTAC
64033635 AAAAGGGCTTATGCCCAAGTTATT
1 AAAAGGGCTTATGCCCAAGTTATT
* *
64033659 AAAAGAGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCAAGTTATT
*
64033683 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCAAGTTATT
64033706 AAAAGAGGCT
1 AAAAG-GGCT
64033716 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
23 17 0.33
24 35 0.67
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCAAGTTATT
Found at i:64033728 original size:48 final size:48
Alignment explanation
Indices: 64033635--64033729 Score: 131
Period size: 47 Copynumber: 2.0 Consensus size: 48
64033625 GAGGAAGTAC
* *
64033635 AAAAGGGCTTATGCCCAAGTTATTAAAAGAGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCAAGTTATTAAAAGAGCTTAGGCCCCAGTTATT
*
64033683 AAAAGGGCTT-TGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCAAGTTATTAAAAGA-GCTTAGGCC-CCAGTTAT
64033730 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
47 23 0.55
48 19 0.45
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCAAGTTATTAAAAGAGCTTAGGCCCCAGTTATT
Found at i:64036960 original size:47 final size:47
Alignment explanation
Indices: 64036903--64037206 Score: 419
Period size: 47 Copynumber: 6.4 Consensus size: 47
64036893 ATTGATGTAC
* * *
64036903 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
64036950 AAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
64036999 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
64037046 AAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
64037093 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
64037140 AAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
64037187 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
64037207 TCCCGAAGGG
Statistics
Matches: 236, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 190 0.81
49 46 0.19
ACGTcount: A:0.35, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:64039760 original size:28 final size:28
Alignment explanation
Indices: 64039720--64039778 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
64039710 CAATAATTTT
*
64039720 CATGCACTCATAAAATCATACTATAACA
1 CATGCACTCATAAAATCATACTACAACA
*
64039748 CATGCGCTCATAAAATCATACTACAACA
1 CATGCACTCATAAAATCATACTACAACA
64039776 CAT
1 CAT
64039779 AAAATAATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.44, C:0.27, G:0.05, T:0.24
Consensus pattern (28 bp):
CATGCACTCATAAAATCATACTACAACA
Found at i:64044135 original size:40 final size:40
Alignment explanation
Indices: 64044037--64044298 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
64044027 TCCTCGTTCA
* * * * *
64044037 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
64044076 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
64044116 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
64044156 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
64044196 AATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
64044235 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
64044275 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
64044299 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 72 0.37
40 117 0.59
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:64044214 original size:119 final size:119
Alignment explanation
Indices: 64044037--64044298 Score: 314
Period size: 119 Copynumber: 2.2 Consensus size: 119
64044027 TCCTCGTTCA
* * *
64044037 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
* ** * *
64044102 TAACAACTCGCACGACTGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
66 TAACAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATATAATAACTTAGCAC
* * *
64044155 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTC-GGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGGA
** * * * *
64044219 TTTAGTATCTCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCAC
64 TTTAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
*
64044275 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
64044299 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
118 3 0.02
119 104 0.86
120 14 0.12
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
TAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
Found at i:64044252 original size:79 final size:79
Alignment explanation
Indices: 64044037--64044298 Score: 307
Period size: 79 Copynumber: 3.3 Consensus size: 79
64044027 TCCTCGTTCA
* * * * *
64044037 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
64044102 TAACAACTCGCACG
66 TAACAACTCGCACG
* *
64044116 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
*
64044181 TTAATAACTCGCACG
65 TTAACAACTCGCACG
* * *
64044196 AATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCCGGA
* * *
64044259 TATATTC-ACTTAGCAC-
64 TTTA-ACAAC-TCGCACG
* *
64044275 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
64044299 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
78 3 0.02
79 91 0.58
80 64 0.41
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACG
Found at i:64052109 original size:40 final size:40
Alignment explanation
Indices: 64051975--64052236 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
64051965 TCCTCGTTCA
* * * * *
64051975 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
64052014 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
64052054 -ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
64052093 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
64052133 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
64052173 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
64052213 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
64052237 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 74 0.37
40 116 0.59
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:64058146 original size:29 final size:30
Alignment explanation
Indices: 64058080--64058314 Score: 310
Period size: 29 Copynumber: 8.2 Consensus size: 30
64058070 ACCCCTACAT
*
64058080 ACATGCATATGGCCCA-CTAGGCCCAA-TC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
* *
64058108 TCATTTATATGGCCCATCTA-GCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
64058137 ACATTCATATGGCCCATC-AGGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
64058166 ACATTCATATGGCCCAT-TAGGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
*
64058195 ACATTCATATGGCCCATC-CGGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
* *
64058224 ACATTCATATGGCCTAT-TAGACCCAA-TC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
* * * *
64058252 TCATTTATATGGCTCATCCA-GCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
64058281 ACATTCATATGGCCCAT-TAGGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
64058310 ACATT
1 ACATT
64058315 TATGTGGGAT
Statistics
Matches: 179, Mismatches: 19, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
28 41 0.23
29 138 0.77
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (30 bp):
ACATTCATATGGCCCATCTAGGCCCAATTC
Found at i:64058287 original size:115 final size:115
Alignment explanation
Indices: 64058080--64058314 Score: 334
Period size: 115 Copynumber: 2.0 Consensus size: 115
64058070 ACCCCTACAT
* * *
64058080 ACATGCATATGGCCCACTAGGCCCAATCTCATTTATATGGCCCATCTAGCCCAATTCACATTCAT
1 ACATTCATATGGCCCACTAGGCCCAATCACATTCATATGGCCCATCTAGCCCAATTCACATTCAT
64058145 ATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATTC
66 ATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATTC
* * *
64058195 ACATTCATATGGCCCA-TCCGGCCCAATTCACATTCATATGGCCTAT-TAGACCCAA-TCTCATT
1 ACATTCATATGGCCCACT-AGGCCCAA-TCACATTCATATGGCCCATCTAG-CCCAATTCACATT
* *
64058257 TATATGGCTCATCCA-GCCCAATTCACATTCATATGGCCCATTAGGCCCAATTC
63 CATATGGCCCAT-CAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATTC
64058310 ACATT
1 ACATT
64058315 TATGTGGGAT
Statistics
Matches: 108, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
114 1 0.01
115 84 0.78
116 23 0.21
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (115 bp):
ACATTCATATGGCCCACTAGGCCCAATCACATTCATATGGCCCATCTAGCCCAATTCACATTCAT
ATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATTC
Found at i:64073697 original size:29 final size:29
Alignment explanation
Indices: 64073626--64073806 Score: 192
Period size: 29 Copynumber: 6.3 Consensus size: 29
64073616 ACCCCTACAT
* * *
64073626 ACATGCATATGGCCCACTAGGCCCAA-TC
1 ACATTCATATGGCCCATTCGGCCCAATTC
* *
64073654 TCATTTATATGGCCCATTCGGCCCAATTC
1 ACATTCATATGGCCCATTCGGCCCAATTC
* *
64073683 ACGTTCATATGGCCCATTAGGCCCAATTC
1 ACATTCATATGGCCCATTCGGCCCAATTC
*
64073712 ACATTCATATGGCCCATCCGGCCCAATTC
1 ACATTCATATGGCCCATTCGGCCCAATTC
64073741 ACATTCATATGGCCCATTAC-GCCCAA-TC
1 ACATTCATATGGCCCATT-CGGCCCAATTC
* * * * *
64073769 TCATTTATATGACTCATCCGGCCCAAATT-
1 ACATTCATATGGCCCATTCGGCCC-AATTC
64073798 ACATT-ATAT
1 ACATTCATAT
64073807 TTATGCTTAC
Statistics
Matches: 129, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.01
28 44 0.34
29 82 0.64
30 2 0.02
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (29 bp):
ACATTCATATGGCCCATTCGGCCCAATTC
Found at i:64073739 original size:58 final size:57
Alignment explanation
Indices: 64073626--64073806 Score: 249
Period size: 58 Copynumber: 3.2 Consensus size: 57
64073616 ACCCCTACAT
* * *
64073626 ACATGCATATGGCCCACTAGGCCCAATCTCATTTATATGGCCCATTCGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTC
* * *
64073683 ACGTTCATATGGCCCATTAGGCCCAATTCACATTCATATGGCCCATCCGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAA-TCTCATTTATATGGCCCATCCGGCCCAATTC
* * *
64073741 ACATTCATATGGCCCATTACGCCCAATCTCATTTATATGACTCATCCGGCCCAAATT-
1 ACATTCATATGGCCCATTAGGCCCAATCTCATTTATATGGCCCATCCGGCCC-AATTC
64073798 ACATT-ATAT
1 ACATTCATAT
64073807 TTATGCTTAC
Statistics
Matches: 110, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
56 4 0.04
57 50 0.45
58 56 0.51
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (57 bp):
ACATTCATATGGCCCATTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTC
Found at i:64073909 original size:19 final size:18
Alignment explanation
Indices: 64073873--64073910 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
64073863 ATGGGCTCAA
64073873 TAGCCCTTCGGCCCCATT
1 TAGCCCTTCGGCCCCATT
64073891 TAGCCCATTCCGG-CCCATT
1 TAGCCC-TT-CGGCCCCATT
64073910 T
1 T
64073911 GGCCTATTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 9 0.50
20 3 0.17
ACGTcount: A:0.13, C:0.42, G:0.16, T:0.29
Consensus pattern (18 bp):
TAGCCCTTCGGCCCCATT
Found at i:64076327 original size:199 final size:200
Alignment explanation
Indices: 64075977--64076369 Score: 707
Period size: 199 Copynumber: 2.0 Consensus size: 200
64075967 AGAAATAGCC
* *
64075977 CACAATTCCAATTATCTCACACATTTACAACCTATTTTATAAACTTTACAAAATGGTCCCTTCAG
1 CACAATTCCAATTATCTCACACATTTACAACCCATTTTATAAACTTTACAAAATGGTCCATTCAG
*
64076042 GTGTTTTCATGAAAACTACTTCACAAAAATTGTTGATTTAACCACCATAACTCATTTTCTTCCAT
66 GTGTTTTCATGAAAACTACTTCACAAAAATTGTTCATTTAACCACCATAACTCATTTTCTTCCAT
*
64076107 AATATTTTAGTAAACATTTCAAAATCTTTCATGACAAAACCCTAGACTTTCAAT-ATTTTGCAAT
131 AATATTTTAGCAAACATTTCAAAATCTTTCATGACAAAACCCTAGACTTTCAATGATTTTGCAAT
64076171 TATCT
196 TATCT
*
64076176 CACAATTCCAATTATCTCACACATTTACAACCCATTTTATAAACTTTACAAAATGGTCCATTGAG
1 CACAATTCCAATTATCTCACACATTTACAACCCATTTTATAAACTTTACAAAATGGTCCATTCAG
64076241 GTGTTTTCATGAAAACTACTTCACAAAAATTGTTCATTTAACCACCATAACTCATTTTCTTCCAT
66 GTGTTTTCATGAAAACTACTTCACAAAAATTGTTCATTTAACCACCATAACTCATTTTCTTCCAT
* * *
64076306 AATATTTTAGCAAAGATTTCAAAATCTTTCATGACAAAACCTTAGACTTTCAATGTTTTTGCAA
131 AATATTTTAGCAAACATTTCAAAATCTTTCATGACAAAACCCTAGACTTTCAATGATTTTGCAA
64076370 AATAGTCCTT
Statistics
Matches: 185, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
199 177 0.96
200 8 0.04
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (200 bp):
CACAATTCCAATTATCTCACACATTTACAACCCATTTTATAAACTTTACAAAATGGTCCATTCAG
GTGTTTTCATGAAAACTACTTCACAAAAATTGTTCATTTAACCACCATAACTCATTTTCTTCCAT
AATATTTTAGCAAACATTTCAAAATCTTTCATGACAAAACCCTAGACTTTCAATGATTTTGCAAT
TATCT
Found at i:64081756 original size:42 final size:42
Alignment explanation
Indices: 64081665--64081761 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 42
64081655 CTAAGATTAA
* * *
64081665 GTGTAAGACCATATCCGGGATAAGGCATCAGTATGATACTTC
1 GTGTAAGACCATATCCGGGATAAGGCATCAATACGAGACTTC
* * * * * * *
64081707 ATATAAGACTATATCTGGGATATGGCATCAATGCGAGATTTC
1 GTGTAAGACCATATCCGGGATAAGGCATCAATACGAGACTTC
64081749 GTGTAAGACCATA
1 GTGTAAGACCATA
64081762 GTTGGGCTAT
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATATCCGGGATAAGGCATCAATACGAGACTTC
Found at i:64085041 original size:27 final size:27
Alignment explanation
Indices: 64084969--64085069 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
64084959 CTTTACAACA
* * * * * *
64084969 TACTTTGAGTGGATTGTCATTTTGACA
1 TACTCTGAATGGATTGCCTTTTTGGCG
*
64084996 TACTCTGAATGAATTGCCTTTTTGGCG
1 TACTCTGAATGGATTGCCTTTTTGGCG
* *
64085023 TACTCTGAATGGATTGCCTTTATGGTG
1 TACTCTGAATGGATTGCCTTTTTGGCG
* *
64085050 TACTATGAATGGATTACCTT
1 TACTCTGAATGGATTGCCTT
64085070 ATGGCAAATT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.42
Consensus pattern (27 bp):
TACTCTGAATGGATTGCCTTTTTGGCG
Found at i:64085126 original size:18 final size:18
Alignment explanation
Indices: 64085103--64085138 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
64085093 TTTGTGGTAT
64085103 TTTGTCATCTAGAAAACA
1 TTTGTCATCTAGAAAACA
64085121 TTTGTCATCTAGAAAACA
1 TTTGTCATCTAGAAAACA
64085139 ATGGTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (18 bp):
TTTGTCATCTAGAAAACA
Found at i:64093973 original size:50 final size:49
Alignment explanation
Indices: 64093861--64094036 Score: 199
Period size: 50 Copynumber: 3.5 Consensus size: 49
64093851 CTGGTACGCA
* * **
64093861 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
* *
64093910 TAGTAGCCTGCACTTAGTACTAGACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
* ** * * * *
64093960 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CCATCCGATACACG
*
64094011 TAGTACCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
64094037 TGCGACCTCA
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 30 0.28
50 45 0.41
51 34 0.31
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:64094044 original size:101 final size:99
Alignment explanation
Indices: 64093861--64094044 Score: 251
Period size: 101 Copynumber: 1.8 Consensus size: 99
64093851 CTGGTACGCA
* * * *
64093861 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGATACACATAGTACCCTGCACTTA
* *
64093926 GTACTAGACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * *
64093960 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTACCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCAGATACACATAGTACCCTGCACT
*
64094025 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
64094045 CACAATAGAT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 29 0.40
100 3 0.04
101 40 0.56
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGATACACATAGTACCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:64094881 original size:31 final size:31
Alignment explanation
Indices: 64094843--64094907 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
64094833 TACTCGTTTT
64094843 CACGTAAAGTCACTTAGAAAAAGTTGTTTAA
1 CACGTAAAGTCACTTAGAAAAAGTTGTTTAA
64094874 CACGTAAAGTCACTTAGAAAAAGTTGTTTAA
1 CACGTAAAGTCACTTAGAAAAAGTTGTTTAA
64094905 CAC
1 CAC
64094908 AATTTCAAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (31 bp):
CACGTAAAGTCACTTAGAAAAAGTTGTTTAA
Found at i:64095805 original size:15 final size:17
Alignment explanation
Indices: 64095782--64095813 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
64095772 TGCATACTTA
64095782 GGATACATTGC-ATTAG
1 GGATACATTGCAATTAG
64095798 GGAT-CATTGCAATTAG
1 GGATACATTGCAATTAG
64095814 TTTCATATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (17 bp):
GGATACATTGCAATTAG
Found at i:64098970 original size:43 final size:41
Alignment explanation
Indices: 64098870--64098992 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 41
64098860 AACTTATGTT
*
64098870 TTACGTGTAAGACCATGTCTGGAACATCGGCATCGTATTTGA
1 TTACGTGTAAGACCATGTCTGGGACAT-GGCATCGTATTTGA
* * *
64098912 TTTCGTGTAAAACCATGTCTGGGACAGTGGCATCGATATTTGG
1 TTACGTGTAAGACCATGTCTGGGACA-TGGCATCG-TATTTGA
* *
64098955 TTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TTACGTGTAAGACCATGTCTGGGACA-TGGCATCGTAT
64098993 GAGCTTTTCG
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 33 0.47
43 37 0.53
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (41 bp):
TTACGTGTAAGACCATGTCTGGGACATGGCATCGTATTTGA
Found at i:64099729 original size:11 final size:10
Alignment explanation
Indices: 64099708--64099750 Score: 59
Period size: 11 Copynumber: 4.1 Consensus size: 10
64099698 TATTGAAACA
64099708 TATGATTTGG
1 TATGATTTGG
64099718 TATGATTTTGG
1 TATGA-TTTGG
*
64099729 TTTAGATTTGG
1 TAT-GATTTGG
64099740 TATGATTTGG
1 TATGATTTGG
64099750 T
1 T
64099751 TGGTGAATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 13 0.45
11 14 0.48
12 2 0.07
ACGTcount: A:0.19, C:0.00, G:0.28, T:0.53
Consensus pattern (10 bp):
TATGATTTGG
Found at i:64099736 original size:22 final size:21
Alignment explanation
Indices: 64099711--64099751 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
64099701 TGAAACATAT
64099711 GATTTGGTATGATTTTGGTTTA
1 GATTTGGTATGA-TTTGGTTTA
64099733 GATTTGGTATGATTTGGTT
1 GATTTGGTATGATTTGGTT
64099752 GGTGAATTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.17, C:0.00, G:0.29, T:0.54
Consensus pattern (21 bp):
GATTTGGTATGATTTGGTTTA
Found at i:64101076 original size:20 final size:20
Alignment explanation
Indices: 64101028--64101069 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
64101018 GTAACTAAAA
64101028 AGGTACCAAAGTTACCGTAT
1 AGGTACCAAAGTTACCGTAT
64101048 AGGTACCAAAGTTACCGTAT
1 AGGTACCAAAGTTACCGTAT
64101068 AG
1 AG
64101070 AGTCCAACTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (20 bp):
AGGTACCAAAGTTACCGTAT
Found at i:64107805 original size:49 final size:46
Alignment explanation
Indices: 64107730--64108001 Score: 205
Period size: 49 Copynumber: 5.7 Consensus size: 46
64107720 GGGATATGTT
*
64107730 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTATCATCATCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATC-TCGAG
* * * * * *
64107779 GCTGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTCTATAC-AT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATC--T-CGAG
* * * * * *
64107829 ACTGATGCATGTCCCAGACATGTCTTTCACTAGC-A-CAACTCTTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTC-GAG
* * *
64107873 GCCGATGCGTGTCCCAGACACGTCTTACATTGGCTATCATCGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATC-TCGAG
* * *
64107920 GCCGATGCATGTCCCACACATGTCTTACACTAGTGC--TCATTCTCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTATCA-TCTCGAG
64107967 GCCGATGCCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATG-CATGTCCCAGACATGTCTTACACTGGC
64108002 ACACAAGTAA
Statistics
Matches: 182, Mismatches: 29, Indels: 27
0.76 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 28 0.15
45 2 0.01
46 8 0.04
47 43 0.24
48 37 0.20
49 53 0.29
50 9 0.05
51 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTCGAG
Found at i:64107933 original size:91 final size:94
Alignment explanation
Indices: 64107832--64108001 Score: 231
Period size: 91 Copynumber: 1.8 Consensus size: 94
64107822 TATACATACT
* * *
64107832 GATGCATGTCCCAGACATGTCTTTCACTA-GCACAACTCT-TA-GCCGATG-CGTGTCCCAGACA
1 GATGCATGTCCCACACATGTCTTACACTAGGCAC-ACTCTCTACGCCGATGCCATGTCCCAGACA
*
64107893 CGTCTTACATTGGCTATCATCGTCGAGGCC
65 CGTCTTACACTGGCTATCATCGTCGAGGCC
* *
64107923 GATGCATGTCCCACACATGTCTTACACTAGTGCTCATTCTCTACGCCGATGCCATGTCCCAGACA
1 GATGCATGTCCCACACATGTCTTACACTAG-GCACACTCTCTACGCCGATGCCATGTCCCAGACA
*
64107988 TGTCTTACACTGGC
65 CGTCTTACACTGGC
64108002 ACACAAGTAA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
91 27 0.40
92 4 0.06
93 5 0.07
94 7 0.10
95 24 0.36
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (94 bp):
GATGCATGTCCCACACATGTCTTACACTAGGCACACTCTCTACGCCGATGCCATGTCCCAGACAC
GTCTTACACTGGCTATCATCGTCGAGGCC
Found at i:64108007 original size:141 final size:142
Alignment explanation
Indices: 64107730--64108004 Score: 364
Period size: 139 Copynumber: 2.0 Consensus size: 142
64107720 GGGATATGTT
* *
64107730 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTATCATCATCGAGGCTGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATCGTCTTACATTGGCTATCATCATCGAGGCCGATGCCATGTCCC
* * * *
64107795 AGACATGGTCTTATACTAGCTCTCGTCTATACATACTGATGCATGTCCCAGACATGTCTTTCACT
66 ACACATGGTCTTACACTAGCTCTCGTCTATACA-ACCGATGCATGTCCCAGACATGTCTTACACT
64107860 AGCACAACTCTTA
130 AGCACAACTCTTA
* *
64107873 GCCGATG-CGTGTCCCAGACA-CGTCTTACATTGGCTATCATCGTCGAGGCCGATG-CATGTCCC
1 GCCGATGCCATGTCCCAGACATCGTCTTACATTGGCTATCATCATCGAGGCCGATGCCATGTCCC
* * *
64107935 ACACAT-GTCTTACACTAG-TGCTCATTCTCTAC-GCCGATGCCATGTCCCAGACATGTCTTACA
66 ACACATGGTCTTACACTAGCT-CTC-GTCTATACAACCGATG-CATGTCCCAGACATGTCTTACA
*
64107997 CTGGCACA
128 CTAGCACA
64108005 CAAGTAATCC
Statistics
Matches: 117, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
138 6 0.05
139 42 0.36
140 19 0.16
141 31 0.26
142 12 0.10
143 7 0.06
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (142 bp):
GCCGATGCCATGTCCCAGACATCGTCTTACATTGGCTATCATCATCGAGGCCGATGCCATGTCCC
ACACATGGTCTTACACTAGCTCTCGTCTATACAACCGATGCATGTCCCAGACATGTCTTACACTA
GCACAACTCTTA
Found at i:64111999 original size:40 final size:40
Alignment explanation
Indices: 64111948--64112059 Score: 170
Period size: 40 Copynumber: 2.8 Consensus size: 40
64111938 CATTTGAATG
64111948 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTGAT
* * *
64111988 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTGAT
* * *
64112028 ATACCCGGGTTAAGATCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGC
64112060 TTGTGGTTAT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTGAT
Found at i:64120085 original size:36 final size:37
Alignment explanation
Indices: 64120020--64120090 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 37
64120010 CATTTGAATG
*
64120020 ATATCCGGGCTATAGACCGAAGCATTTGTGCGAGTGAT
1 ATATCCGGGCTATAGACCGAAG-AGTTGTGCGAGTGAT
64120058 ATATCCGGGCTA-AGACCTGAAG-GTTGTGCGAGT
1 ATATCCGGGCTATAGACC-GAAGAGTTGTGCGAGT
64120091 TTGCTATACG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 10 0.32
37 5 0.16
38 16 0.52
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (37 bp):
ATATCCGGGCTATAGACCGAAGAGTTGTGCGAGTGAT
Found at i:64191565 original size:40 final size:40
Alignment explanation
Indices: 64191471--64191690 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
64191461 AACCCAAGTA
* *
64191471 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
64191510 -CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
64191549 CCTTCGGGACTTAGCCCGGATTTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
64191589 CCTTTGGGAC-TAGCCCGGATTTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
64191628 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
64191668 CATTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
64191691 CATTCGAATT
Statistics
Matches: 165, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
38 11 0.07
39 60 0.36
40 94 0.57
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:64191603 original size:79 final size:80
Alignment explanation
Indices: 64191471--64191690 Score: 313
Period size: 79 Copynumber: 2.8 Consensus size: 80
64191461 AACCCAAGTA
* * *
64191471 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG-CTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
64191533 GTCACTAGCACAAAAG
65 GTCACTAGCACAAAAG
* * *
64191549 CCTTCGGGACTTAGCCCGGATTTAGTCACTAGCACAAATGCCTTTGGGAC-TAGCCCGGATTTAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
64191613 TCACTAGCACAAATG
66 TCACTAGCACAAAAG
* * *
64191628 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAATTGCATTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
64191691 CATTCGAATT
Statistics
Matches: 125, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
78 13 0.10
79 93 0.74
80 19 0.15
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAAAG
Found at i:64195147 original size:42 final size:41
Alignment explanation
Indices: 64195084--64195191 Score: 121
Period size: 41 Copynumber: 2.6 Consensus size: 41
64195074 GATATTGATG
* * *
64195084 ATCCGGGCTAAGTTCCCGAAGGC-TTCTGTGTAAGGCTGAC-AT
1 ATCCGGACTAAGATCCCGAAGGCATT-T-TGTAAGG-TGACTAA
* * *
64195126 ATCCGGACTAAGATCCGGAAGGCATTTTGTACGGTTACTAA
1 ATCCGGACTAAGATCCCGAAGGCATTTTGTAAGGTGACTAA
64195167 ATCCGGACTAAGATCCCGAAGGCAT
1 ATCCGGACTAAGATCCCGAAGGCAT
64195192 GTTCGTGCGA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
40 3 0.05
41 31 0.54
42 21 0.37
43 2 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (41 bp):
ATCCGGACTAAGATCCCGAAGGCATTTTGTAAGGTGACTAA
Found at i:64202731 original size:40 final size:39
Alignment explanation
Indices: 64202650--64202949 Score: 273
Period size: 40 Copynumber: 7.8 Consensus size: 39
64202640 GAATGATGTA
* * * * *
64202650 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATATC
1 CGGGCTAAGT-CCGAAGGCATTTGTACGA-GTTACTAAATC
*
64202690 CGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAAATC
1 CGGGCTAAG-TCCGAAGGCATTTGTACGAGTTACTAAATC
*
64202730 CGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAAATC
1 CGGGCTAAG-TCCGAAGGCATTTGTACGAGTTACTAAATC
* * *
64202770 CGGACTAAGATTCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAG-TCCGAAGGCATTTGTACGAGTTACTAAATC
*
64202810 CGGGTTAAGT-C--A---A--TG--CGAGTTACTAAATC
1 CGGGCTAAGTCCGAAGGCATTTGTACGAGTTACTAAATC
* *
64202839 CGGGTTAAGTCCCGAAGGCATTTGTCCGAGTTACTAAATC
1 CGGGCTAAGT-CCGAAGGCATTTGTACGAGTTACTAAATC
* * *
64202879 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAA-C
1 CGGGCTAAGT-CCGAAGGCATTTGTACGAGTTACTA-AATC
* *
64202919 CGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 CGGGCTAAGT-CCGAAGGCATTTGTACGAGT
64202950 AGCTATATCC
Statistics
Matches: 230, Mismatches: 16, Indels: 28
0.84 0.06 0.10
Matches are distributed among these distances:
29 24 0.10
31 3 0.01
33 2 0.01
36 2 0.01
38 3 0.01
39 1 0.00
40 185 0.80
41 10 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (39 bp):
CGGGCTAAGTCCGAAGGCATTTGTACGAGTTACTAAATC
Found at i:64202826 original size:29 final size:29
Alignment explanation
Indices: 64202794--64202849 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
64202784 AAGGCATTTG
64202794 TGCGAGTTACTAAATCCGGGTTAAGTCAA
1 TGCGAGTTACTAAATCCGGGTTAAGTCAA
64202823 TGCGAGTTACTAAATCCGGGTTAAGTC
1 TGCGAGTTACTAAATCCGGGTTAAGTC
64202850 CCGAAGGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (29 bp):
TGCGAGTTACTAAATCCGGGTTAAGTCAA
Found at i:64202829 original size:69 final size:69
Alignment explanation
Indices: 64202756--64202889 Score: 216
Period size: 69 Copynumber: 1.9 Consensus size: 69
64202746 GGCATTTGTA
* *
64202756 CGAGTTACTAAATCCGGACTAAGAT-TCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGT
1 CGAGTTACTAAATCCGGACTAAG-TCCCGAAGGCATTTGTCCGAGTTACTAAATCCGGGTTAAGT
64202820 CAATG
65 CAATG
**
64202825 CGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTCCGAGTTACTAAATCCGGGTTAAGTC
1 CGAGTTACTAAATCCGGACTAAGTCCCGAAGGCATTTGTCCGAGTTACTAAATCCGGGTTAAGTC
64202890 CCGAAGGCAT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
68 1 0.02
69 59 0.98
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (69 bp):
CGAGTTACTAAATCCGGACTAAGTCCCGAAGGCATTTGTCCGAGTTACTAAATCCGGGTTAAGTC
AATG
Found at i:64202960 original size:80 final size:79
Alignment explanation
Indices: 64202823--64202975 Score: 193
Period size: 80 Copynumber: 1.9 Consensus size: 79
64202813 GTTAAGTCAA
* ** *
64202823 TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTCCGAGTTACTAAATCCGGGTTAAG
1 TGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCC-GGTTAAA
64202888 TCCCGAAGGCATTTG
65 TCCCGAAGGCATTTG
* * *
64202903 TGCGAGTTATTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAA
1 TGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGTTAA
*
64202966 ATTCCGAAGG
64 ATCCCGAAGG
64202976 TACGTGATTT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
79 16 0.25
80 45 0.71
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
TGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGTTAAAT
CCCGAAGGCATTTG
Found at i:64211353 original size:40 final size:40
Alignment explanation
Indices: 64211279--64211500 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
64211269 AACCCAAGTA
* *
64211279 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
64211318 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
64211358 CCTTCGGGACTTAGCCCGGATTTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
64211398 CCTTTGGGACCTAGCCCGGATTTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
64211438 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
64211478 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
64211501 CATTCGAATA
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.07
40 155 0.92
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:64227793 original size:68 final size:68
Alignment explanation
Indices: 64227662--64227796 Score: 166
Period size: 68 Copynumber: 2.0 Consensus size: 68
64227652 AAGCCTATGG
* ** *** *
64227662 GTAAACATGACACCTTATTACGTAAGACCATAGCTGGGCTATAGCAACATCTGGAGTCCGCCAGG
1 GTAAACATGACACCATATTACGTAAGACCATAAATGGGCTATAGCAACAAAAGAAGTCCGCCAGG
64227727 ATA
66 ATA
*
64227730 GTAAACATGACACCATATTGA-GTAAGACCATAAATGGGCTGA-AGCAACAAAAGAAGTCTGCCA
1 GTAAACATGACACCATATT-ACGTAAGACCATAAATGGGCT-ATAGCAACAAAAGAAGTCCGCCA
64227793 GGAT
64 GGAT
64227797 GGTGAACCAA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
68 55 0.96
69 2 0.04
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (68 bp):
GTAAACATGACACCATATTACGTAAGACCATAAATGGGCTATAGCAACAAAAGAAGTCCGCCAGG
ATA
Found at i:64228265 original size:14 final size:14
Alignment explanation
Indices: 64228246--64228276 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
64228236 GCTTTCTGTT
64228246 ATGGGATAATCCAC
1 ATGGGATAATCCAC
64228260 ATGGGATAATCCAC
1 ATGGGATAATCCAC
64228274 ATG
1 ATG
64228277 AGGCTAACTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (14 bp):
ATGGGATAATCCAC
Found at i:64228758 original size:18 final size:18
Alignment explanation
Indices: 64228731--64228766 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
64228721 AGGGAAAGTA
*
64228731 TGGAAGTCTGAGATAGAG
1 TGGAAATCTGAGATAGAG
64228749 TGGAAATCTGAGATAGAG
1 TGGAAATCTGAGATAGAG
64228767 CCTGATGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.36, T:0.22
Consensus pattern (18 bp):
TGGAAATCTGAGATAGAG
Found at i:64232184 original size:18 final size:18
Alignment explanation
Indices: 64232163--64232197 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64232153 CATAAATCAC
* *
64232163 ATAAACTTGATAAATAAG
1 ATAAACATGAAAAATAAG
64232181 ATAAACATGAAAAATAA
1 ATAAACATGAAAAATAA
64232198 ATCAAGAGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.06, G:0.09, T:0.23
Consensus pattern (18 bp):
ATAAACATGAAAAATAAG
Found at i:64233264 original size:104 final size:104
Alignment explanation
Indices: 64233079--64233266 Score: 270
Period size: 104 Copynumber: 1.8 Consensus size: 104
64233069 GCCTATTACA
* ** * * *
64233079 GAATGTATGTGCAAGTTGTCATTGCATTGAATGCATGAATTGTTTTGTGTTGGAATGTATATGTG
1 GAATGTATATGCAAGTTGTCATTGCACCGAATGCATGAATTATTTTGTGATGGAATATATATGTG
* ** *
64233144 AGTTTCCATTGGATCGAATGCATGAACTGGTTTGTGATG
66 AGCTGACATTGCATCGAATGCATGAACTGGTTTGTGATG
64233183 GAATGTATATGCAAGTT-TCCATTGCACCGAATGCATGAATTATTTTGTGATGGAATATATATGT
1 GAATGTATATGCAAGTTGT-CATTGCACCGAATGCATGAATTATTTTGTGATGGAATATATATGT
64233247 GAGCTGACATTGCATCGAAT
65 GAGCTGACATTGCATCGAAT
64233267 ATATGAAATG
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
103 1 0.01
104 72 0.99
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.37
Consensus pattern (104 bp):
GAATGTATATGCAAGTTGTCATTGCACCGAATGCATGAATTATTTTGTGATGGAATATATATGTG
AGCTGACATTGCATCGAATGCATGAACTGGTTTGTGATG
Found at i:64233273 original size:52 final size:52
Alignment explanation
Indices: 64233098--64233266 Score: 221
Period size: 52 Copynumber: 3.2 Consensus size: 52
64233088 TGCAAGTTGT
* *
64233098 CATTGCATTGAATGCATGAATTGTTTTGTGTTGGAATGTATATGTGAGTTTC
1 CATTGCATCGAATGCATGAATTGTTTTGTGATGGAATGTATATGTGAGTTTC
* * * **
64233150 CATTGGATCGAATGCATGAACTGGTTTGTGATGGAATGTATATGCAAGTTTC
1 CATTGCATCGAATGCATGAATTGTTTTGTGATGGAATGTATATGTGAGTTTC
* * * * **
64233202 CATTGCACCGAATGCATGAATTATTTTGTGATGGAATATATATGTGAGCTGA
1 CATTGCATCGAATGCATGAATTGTTTTGTGATGGAATGTATATGTGAGTTTC
64233254 CATTGCATCGAAT
1 CATTGCATCGAAT
64233267 ATATGAAATG
Statistics
Matches: 98, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 98 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.37
Consensus pattern (52 bp):
CATTGCATCGAATGCATGAATTGTTTTGTGATGGAATGTATATGTGAGTTTC
Found at i:64233507 original size:27 final size:25
Alignment explanation
Indices: 64233476--64233528 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 25
64233466 GGATTTTGTA
*
64233476 AAGTATTCATGTGTGTGCTAACTCTAT
1 AAGTATTCATGTGCGTGCT--CTCTAT
64233503 AAGTATTCATGTGCGTGCTCTCTAT
1 AAGTATTCATGTGCGTGCTCTCTAT
64233528 A
1 A
64233529 GAAAGTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 7 0.28
27 18 0.72
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.40
Consensus pattern (25 bp):
AAGTATTCATGTGCGTGCTCTCTAT
Found at i:64233744 original size:17 final size:17
Alignment explanation
Indices: 64233708--64233746 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
64233698 TCCGTGCCAA
*
64233708 ATGTGCGAGTTGTGCCC
1 ATGTGCGAGTTGTGACC
*
64233725 ATGTGCGAGTTGTGATC
1 ATGTGCGAGTTGTGACC
64233742 ATGTG
1 ATGTG
64233747 TGAACTGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.36, T:0.33
Consensus pattern (17 bp):
ATGTGCGAGTTGTGACC
Found at i:64236884 original size:31 final size:31
Alignment explanation
Indices: 64236848--64236910 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
64236838 GACATGTCAC
**
64236848 TAGGAACTATGTGGATATCAGTTCATGAATA
1 TAGGAACTATGTGGATATCAACTCATGAATA
64236879 TAGGAACTATGTGGATATCAACTCATGAATA
1 TAGGAACTATGTGGATATCAACTCATGAATA
64236910 T
1 T
64236911 GTGTGTATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (31 bp):
TAGGAACTATGTGGATATCAACTCATGAATA
Found at i:64239580 original size:30 final size:30
Alignment explanation
Indices: 64239544--64239603 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
64239534 AAATGAGACA
64239544 AGGGATTATAATGTAATGAACTTATCTATG
1 AGGGATTATAATGTAATGAACTTATCTATG
64239574 AGGGATTATAATGTAATGAACTTATCTATG
1 AGGGATTATAATGTAATGAACTTATCTATG
64239604 TTAAATTGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.37
Consensus pattern (30 bp):
AGGGATTATAATGTAATGAACTTATCTATG
Found at i:64240690 original size:15 final size:15
Alignment explanation
Indices: 64240670--64240737 Score: 82
Period size: 15 Copynumber: 4.5 Consensus size: 15
64240660 ATTATGATAT
64240670 TGTATCTTGGATTTC
1 TGTATCTTGGATTTC
*
64240685 TGTATCTTGAATTTC
1 TGTATCTTGGATTTC
* *
64240700 TTTATCTAGGATTTC
1 TGTATCTTGGATTTC
* * *
64240715 TTTGTCTTGGACTTC
1 TGTATCTTGGATTTC
64240730 TGTATCTT
1 TGTATCTT
64240738 AGTTTTTATG
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 44 1.00
ACGTcount: A:0.15, C:0.15, G:0.16, T:0.54
Consensus pattern (15 bp):
TGTATCTTGGATTTC
Found at i:64248168 original size:25 final size:25
Alignment explanation
Indices: 64248140--64248199 Score: 120
Period size: 25 Copynumber: 2.4 Consensus size: 25
64248130 ACAAAATACA
64248140 CCACAAAGGCAACATACATAATATG
1 CCACAAAGGCAACATACATAATATG
64248165 CCACAAAGGCAACATACATAATATG
1 CCACAAAGGCAACATACATAATATG
64248190 CCACAAAGGC
1 CCACAAAGGC
64248200 TAGAAGAATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.47, C:0.27, G:0.13, T:0.13
Consensus pattern (25 bp):
CCACAAAGGCAACATACATAATATG
Found at i:64248212 original size:20 final size:20
Alignment explanation
Indices: 64248187--64248252 Score: 80
Period size: 20 Copynumber: 3.2 Consensus size: 20
64248177 CATACATAAT
64248187 ATGCCACAAAGGCTAGA-AGA
1 ATGCCACAAAGGCTA-ACAGA
* *
64248207 ATGCCATAAAGGCTAACAAA
1 ATGCCACAAAGGCTAACAGA
64248227 ATGTGCCACAAAGGCTAACAGA
1 A--TGCCACAAAGGCTAACAGA
64248249 ATGC
1 ATGC
64248253 ATTACAAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 1 0.03
20 20 0.51
22 18 0.46
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.14
Consensus pattern (20 bp):
ATGCCACAAAGGCTAACAGA
Found at i:64248239 original size:22 final size:22
Alignment explanation
Indices: 64248188--64248251 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
64248178 ATACATAATA
64248188 TGCCACAAAGGCTAGA-AGAA--
1 TGCCACAAAGGCTA-ACAGAATG
* *
64248208 TGCCATAAAGGCTAACAAAATG
1 TGCCACAAAGGCTAACAGAATG
64248230 TGCCACAAAGGCTAACAGAATG
1 TGCCACAAAGGCTAACAGAATG
64248252 CATTACAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.03
20 16 0.43
22 20 0.54
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.14
Consensus pattern (22 bp):
TGCCACAAAGGCTAACAGAATG
Found at i:64256321 original size:3 final size:3
Alignment explanation
Indices: 64256313--64256342 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
64256303 GAATTGAATT
64256313 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
64256343 GCCAGGTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:64279479 original size:42 final size:42
Alignment explanation
Indices: 64279420--64279514 Score: 163
Period size: 42 Copynumber: 2.3 Consensus size: 42
64279410 GCTGTGTCAG
* *
64279420 ACGCCCGTGTCCCAGGCCGTGTCAACCACACAGCTGAGACAC
1 ACGCCCGTGTCCCAGGCCATGTCAACCACACAGCTAAGACAC
*
64279462 ACGCCCGTGTCCCAGGCCATGTCAACCACACGGCTAAGACAC
1 ACGCCCGTGTCCCAGGCCATGTCAACCACACAGCTAAGACAC
64279504 ACGCCCGTGTC
1 ACGCCCGTGTC
64279515 TCTGCCTGTG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.23, C:0.41, G:0.23, T:0.13
Consensus pattern (42 bp):
ACGCCCGTGTCCCAGGCCATGTCAACCACACAGCTAAGACAC
Found at i:64280467 original size:15 final size:15
Alignment explanation
Indices: 64280447--64280477 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
64280437 TTGGGCACTC
64280447 AATTTAGTCAAAAGG
1 AATTTAGTCAAAAGG
64280462 AATTTAGTCAAAAGG
1 AATTTAGTCAAAAGG
64280477 A
1 A
64280478 CTAAATTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.26
Consensus pattern (15 bp):
AATTTAGTCAAAAGG
Found at i:64303820 original size:40 final size:40
Alignment explanation
Indices: 64303729--64303913 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
64303719 GCTACTCGTT
* * *
64303729 CAAATGCCTTCCGGACATAGCCCGG-TTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
64303769 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
64303809 CAAACGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
64303848 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
64303889 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64303914 CATCATTCAA
Statistics
Matches: 119, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 75 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:64303829 original size:79 final size:80
Alignment explanation
Indices: 64303729--64303913 Score: 189
Period size: 79 Copynumber: 2.3 Consensus size: 80
64303719 GCTACTCGTT
* * * *
64303729 CAAATGCCTTCCGGACATAGCCCGG-TTATAATAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAATAACTCACACAAATGCCTTC-GGATCTTAACCC
* *
64303792 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
* * * **
64303809 CAAACGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCACACAAATGCCTTCGGATCTTAGTCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATTAATAACTCACACAAATGCCTTCGGATCTTAACCCGG
* *
64303873 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
64303889 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
64303914 CATCATTCAA
Statistics
Matches: 86, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.60
80 31 0.36
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAATAACTCACACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:64307707 original size:28 final size:29
Alignment explanation
Indices: 64307653--64307714 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
64307643 GAAAACGTAT
*
64307653 ATATGAATGTGATTTGGGCATAATGGGCC
1 ATATGAATGAGATTTGGGCATAATGGGCC
* *
64307682 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGAGATTTGGGCATAATGGGCC
64307710 ATATG
1 ATATG
64307715 CATGTATGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 19 0.63
29 11 0.37
ACGTcount: A:0.27, C:0.11, G:0.32, T:0.29
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCATAATGGGCC
Found at i:64309233 original size:45 final size:45
Alignment explanation
Indices: 64309145--64309233 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 45
64309135 ATATGATGTT
* * * *
64309145 ATTTTATTTCTTCTACTGGTTGATGCTTTGAATTATATTTCTGAA
1 ATTTTATTTCTTCTACTAGTTGATGCTGTGAATGATATCTCTGAA
64309190 ATTTTATTTCTTCTACTAGTTGATAG-TGTG-ATCGATATCTCTGA
1 ATTTTATTTCTTCTACTAGTTGAT-GCTGTGAAT-GATATCTCTGA
64309234 CTTTCGGTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 2 0.05
45 35 0.92
46 1 0.03
ACGTcount: A:0.22, C:0.12, G:0.15, T:0.51
Consensus pattern (45 bp):
ATTTTATTTCTTCTACTAGTTGATGCTGTGAATGATATCTCTGAA
Found at i:64309729 original size:46 final size:46
Alignment explanation
Indices: 64309634--64309802 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 46
64309624 AAATCGATGC
* * * *
64309634 CATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTA-CGTCTC-AAGCCGTTG
64309681 CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCAAGGCCGTTG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCAA-GCCGTTG
* * * * *
64309727 CATGTCCCAGACAT-GTCTTACACTAGCCCT-CGTCTCAATCCCAATTC
1 CATGTCCCAGACATGGTCTTACACT-GGCTTACGTCTCAA-GCC-GTTG
*
64309774 CATGTCCCAGACATGGTCTTACATTGGCT
1 CATGTCCCAGACATGGTCTTACACTGGCT
64309803 CTCATAATGT
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
45 1 0.01
46 57 0.55
47 37 0.36
48 9 0.09
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCAAGCCGTTG
Found at i:64316002 original size:21 final size:22
Alignment explanation
Indices: 64315962--64316002 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
64315952 CACTTGACAT
*
64315962 AGGGGCAACATGCCCATGTGAA
1 AGGGGCAACACGCCCATGTGAA
*
64315984 AGGGGC-ACACGCCCGTGTG
1 AGGGGCAACACGCCCATGTG
64316003 GCCAGTTCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.24, C:0.27, G:0.37, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGTGAA
Found at i:64320641 original size:26 final size:26
Alignment explanation
Indices: 64320605--64320673 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
64320595 CATTCTGACC
*
64320605 CACAGCTCGTGTGAGCAGGCCCATTT
1 CACAGCTCGTGTGAGCAGACCCATTT
64320631 CACAGCTCGTGTGAGCAGACCCATTT
1 CACAGCTCGTGTGAGCAGACCCATTT
*
64320657 CATAGCTCGTGTGAGCA
1 CACAGCTCGTGTGAGCA
64320674 ATGATATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAGACCCATTT
Found at i:64323930 original size:25 final size:25
Alignment explanation
Indices: 64323902--64323949 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64323892 TTATAATATG
* *
64323902 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
*
64323927 AAAATGACCATTTTACCCTTAGG
1 AAAATGACCATTTTACCCCTAGG
64323950 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:64324126 original size:26 final size:25
Alignment explanation
Indices: 64324082--64324152 Score: 106
Period size: 26 Copynumber: 2.8 Consensus size: 25
64324072 GAGGAAGTGC
*
64324082 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
**
64324107 AAAAGGGCTTTTGCCCCAGTTTATTA
1 AAAAGGGC-TTTGCCCCAGTTTACCA
64324133 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
64324153 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
25 20 0.48
26 22 0.52
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:64324175 original size:25 final size:24
Alignment explanation
Indices: 64324119--64324179 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
64324109 AAGGGCTTTT
**
64324119 GCCCCAGTTTATTAAAAAGGGCTTT
1 GCCCCAG-TTATTAAAAAGGGCTAG
64324144 GCCCCAGTTATT-AAAAGAGGCTAG
1 GCCCCAGTTATTAAAAAG-GGCTAG
64324168 GCCTCCAGTTAT
1 GCC-CCAGTTAT
64324180 ATGTTAAAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 5 0.16
24 12 0.38
25 15 0.47
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
GCCCCAGTTATTAAAAAGGGCTAG
Found at i:64324410 original size:31 final size:31
Alignment explanation
Indices: 64324372--64324486 Score: 187
Period size: 31 Copynumber: 3.7 Consensus size: 31
64324362 TTGTTACAGT
* * *
64324372 AAAGGCTTCGACCCACTGATATGAATAATGG
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
64324403 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
64324434 AAAGGCTTCGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
64324465 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
64324487 CTGAGCTTGA
Statistics
Matches: 80, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.06
31 75 0.94
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:64326663 original size:43 final size:43
Alignment explanation
Indices: 64326591--64326738 Score: 136
Period size: 43 Copynumber: 3.4 Consensus size: 43
64326581 CAATTCCATA
* **** * * *
64326591 TCCCAGATATGGTCTTACATGTCATCATATATCGGTGCCACTG
1 TCCCAGACATGGTCTTACACAAAATCATATAACGATGCCAATG
* *
64326634 TCCTAGACATTGTCTTACACAAAATCATATAACGATGCCAATG
1 TCCCAGACATGGTCTTACACAAAATCATATAACGATGCCAATG
*** * *
64326677 TCCCAGACATGGTCTTACATGTAATCACA-ATACAATGCCAATG
1 TCCCAGACATGGTCTTACACAAAATCATATA-ACGATGCCAATG
*
64326720 TCCCAGACATAGTCTTACA
1 TCCCAGACATGGTCTTACA
64326739 TGTAATCACC
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 1 0.01
43 85 0.99
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACAAAATCATATAACGATGCCAATG
Found at i:64328227 original size:27 final size:27
Alignment explanation
Indices: 64328192--64328247 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
64328182 AAATTAAAAC
*
64328192 AAAATAAAAATAAAAGT-AATGTTCTAA
1 AAAATAAAAATAAAA-TCAATGTCCTAA
64328219 AAAATAAAAATAAAATCAATGTCCTAA
1 AAAATAAAAATAAAATCAATGTCCTAA
64328246 AA
1 AA
64328248 TAAAGAAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.64, C:0.07, G:0.05, T:0.23
Consensus pattern (27 bp):
AAAATAAAAATAAAATCAATGTCCTAA
Found at i:64328997 original size:6 final size:6
Alignment explanation
Indices: 64328988--64329036 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
64328978 AATTAGGTGA
* *
64328988 CAGAAT CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
64329037 GTGAATGCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 2 0.06
6 30 0.83
7 3 0.08
8 1 0.03
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
CAGAAT
Found at i:64329005 original size:31 final size:31
Alignment explanation
Indices: 64328964--64329036 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
64328954 AATCAAAAAG
* * *
64328964 AGAATTAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
64328995 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
64329026 AAAATCAGAAT
1 AGAATCAGAAT
64329037 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:64329214 original size:26 final size:26
Alignment explanation
Indices: 64329154--64329232 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
64329144 AGCATGGCTG
* *
64329154 CCAGAACAGATATTGT-ACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* *
64329179 ACAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* *
64329206 CCAGAACAGATAATGTGGCAAAGCCA
1 CCAGAACAGATATTGTGGCAGAGCCA
64329232 C
1 C
64329233 TTAACAGAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
25 4 0.09
26 30 0.68
27 10 0.23
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:64329419 original size:22 final size:21
Alignment explanation
Indices: 64329391--64329455 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
64329381 GCAAATACGT
64329391 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
64329413 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
64329435 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
64329456 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:64330402 original size:27 final size:27
Alignment explanation
Indices: 64329883--64330395 Score: 614
Period size: 27 Copynumber: 19.0 Consensus size: 27
64329873 GGGGCAAAAT
* * *
64329883 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64329910 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
64329937 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64329964 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
64329991 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
64330018 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* **
64330045 GGTATTTCTATTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
64330072 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
64330099 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64330126 GGTATTTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
64330153 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
64330180 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
64330207 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
64330234 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64330261 AGTAATTCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
64330288 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * * *
64330315 -AAAATTTCAACCCTACAAGGGTATTTT
1 GGTAA-TTCTACCCTACAGGGGTATTTC
* * *
64330342 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
64330369 GGTAATTCTACCCTGTAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
64330396 AATAATTTTG
Statistics
Matches: 417, Mismatches: 67, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 415 1.00
28 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:64330417 original size:27 final size:27
Alignment explanation
Indices: 64330387--64330900 Score: 358
Period size: 27 Copynumber: 19.6 Consensus size: 27
64330377 TACCCTGTAG
* **
64330387 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*** * ** * *
64330414 GGGTAAAACGGTAATTTTGTAAATTGG
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
64330441 GGGTACTTTGA-TAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
*
64330468 GGGTATTTTAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
64330495 GGGTATTTTAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATC-GA
64330522 GGGTATTTC-GATAATTTTACAAATCGA
1 GGGTATTTCAG-TAATTTTACAAATCGA
*
64330549 GGGTATTTCAGTAATTTTAC-AATCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
64330575 CGGTATTTC-GATAATTTTACAAATCGA
1 GGGTATTTCAG-TAATTTTACAAATCGA
*
64330602 GGGTATTTCAGTAATTTTAC-AATCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
** * * * **
64330628 CAGTATTTCGGTAA-TTT-GATAT-TT
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
64330652 GGGTAATTT---T-A---T--AAACCGG
1 GGGT-ATTTCAGTAATTTTACAAATCGA
* *
64330671 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
*
64330698 GGGTATTTCAGTAATTTTACAAATCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
64330725 GGGTATTTTAGTAATTTTACAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATC-GA
* *
64330752 AGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
64330779 GGGTATTTTAGTAATTTTAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
64330805 TGCTATTTCGGTAATTTTAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * * * *
64330831 TGCTATTTCGGTAATTTTATAAA-CTGG
1 GGGTATTTCAGTAATTTTACAAATC-GA
* * *
64330858 GGGTACTTT-GGTAATTTTACAACT-GG
1 GGGTA-TTTCAGTAATTTTACAAATCGA
64330884 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
64330901 GGTAAACTAA
Statistics
Matches: 393, Mismatches: 65, Indels: 59
0.76 0.13 0.11
Matches are distributed among these distances:
18 3 0.01
19 8 0.02
21 2 0.01
22 2 0.01
24 2 0.01
25 14 0.04
26 110 0.28
27 245 0.62
28 7 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:64330418 original size:81 final size:81
Alignment explanation
Indices: 64329887--64330402 Score: 734
Period size: 81 Copynumber: 6.4 Consensus size: 81
64329877 CAAAATGGTA
* * ** *
64329887 ATTT-TACCCTACAAGGGTATCTCGGTAATTCTACCTTACAGGGGTATTTCAGTATTTCTACCCT
1 ATTTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCT
64329951 ACAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* * *
64329967 AATTCTATCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC-GATATTTCTACCC
1 ATTTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAG-TATTTCTACCC
64330031 TACAAGGGTATTTCGGT
65 TACAAGGGTATTTCGGT
** * *
64330048 ATTTCTATTCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTTTACCCT
1 ATTTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCT
64330113 ACAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
*
64330129 ATTTCTACCTTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCT
1 ATTTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCT
*
64330194 ACAAGGGTATTTCGAT
66 ACAAGGGTATTTCGGT
* ** *
64330210 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCT
64330275 AC-AGGGTTATTTCGGT
66 ACAAGGG-TATTTCGGT
* * * **
64330291 ATTTCTACCCTACAAGGGTATTTCAA-AATTTCAACCCTACAAGGGTATTTTGGTATTTCTACCC
1 ATTTCTACCCTACAGGGGTATTTCAATAA-TTCTACCCTACAGGGGTATTTCAGTATTTCTACCC
*
64330355 TATAAGGGTATTTCGGT
65 TACAAGGGTATTTCGGT
* **
64330372 AATTCTACCCTGTAGGGGTATTTCAATAATT
1 ATTTCTACCCTACAGGGGTATTTCAATAATT
64330403 TTGTAAATCG
Statistics
Matches: 395, Mismatches: 34, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
80 10 0.03
81 378 0.96
82 7 0.02
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (81 bp):
ATTTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCT
ACAAGGGTATTTCGGT
Found at i:64330743 original size:123 final size:123
Alignment explanation
Indices: 64330533--64330768 Score: 318
Period size: 123 Copynumber: 1.9 Consensus size: 123
64330523 GGTATTTCGA
*
64330533 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACGGTATTTCGATAATTTTACAAA
1 TAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAATCAACGGTATTTCGATAATTTTACAAA
*
64330598 TCGAGGGTATTTCAGTAATTTTAC-AA-TCAACAGTATTTCGGTAATTTGATATTTGGG
66 TCAAGGGTATTTCAGTAATTTTACAAACTCAA-AGTATTTCGGTAATTTGATATTTGGG
* * * * *
64330655 TAATTTTATAAACCGGGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTC-AGTAATTTTAC
1 TAATTTTACAAACCGAGGGTA-TTTCAGTAATTTTACAA-TCAACGGTATTTCGA-TAATTTTAC
* * *
64330718 AAATCAAGGGTATTTTAGTAATTTTACAAACTGAAGGTATTTCGGTAATTT
63 AAATCAAGGGTATTTCAGTAATTTTACAAACTCAAAGTATTTCGGTAATTT
64330769 TACAAATCGA
Statistics
Matches: 99, Mismatches: 10, Indels: 8
0.85 0.09 0.07
Matches are distributed among these distances:
122 31 0.31
123 48 0.48
124 17 0.17
125 3 0.03
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (123 bp):
TAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAATCAACGGTATTTCGATAATTTTACAAA
TCAAGGGTATTTCAGTAATTTTACAAACTCAAAGTATTTCGGTAATTTGATATTTGGG
Found at i:64330821 original size:203 final size:203
Alignment explanation
Indices: 64330468--64330847 Score: 511
Period size: 203 Copynumber: 1.9 Consensus size: 203
64330458 TACAAGTCGA
* * * * *
64330468 GGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTCGA
1 GGGTACTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTAAGGGTATTTAGA
* *
64330533 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACGGTATTTCGATAATTTTACAAA
66 TAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAATCAACGGTATTTAGATAATTTTACAAA
*
64330598 TCGAGGGTATTTCAGTAATTTTACAATCAACAG-TATTTCGGTAATTTGATATTTGGGTAATTTT
131 TCGAGGCTATTTCAGTAATTTTACAATCAA-AGCTATTTCGGTAATTTGATATTTGGGTAATTTT
64330662 ATAAACCGG
195 ATAAACCGG
* *
64330671 GGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAA-TCAAGGGTATTTTA
1 GGGTACTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACT-AAGGGTA-TTTA
* * *
64330735 G-TAATTTTACAAA-CTGAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAG-TAATTTT
64 GATAATTTTACAAATC-GAAGGTATTTCAGTAATTTTAC-AATCAACGGTA-TTTAGATAATTTT
* * * *
64330797 AC-AATCGATGCTATTTCGGTAATTTTACAATCGATGCTATTTCGGTAATTT
126 ACAAATCGAGGCTATTTCAGTAATTTTACAATCAAAGCTATTTCGGTAATTT
64330848 TATAAACTGG
Statistics
Matches: 154, Mismatches: 17, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
202 3 0.02
203 125 0.81
204 22 0.14
205 4 0.03
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (203 bp):
GGGTACTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTAAGGGTATTTAGA
TAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAATCAACGGTATTTAGATAATTTTACAAA
TCGAGGCTATTTCAGTAATTTTACAATCAAAGCTATTTCGGTAATTTGATATTTGGGTAATTTTA
TAAACCGG
Found at i:64330826 original size:230 final size:229
Alignment explanation
Indices: 64330423--64330849 Score: 692
Period size: 230 Copynumber: 1.9 Consensus size: 229
64330413 AGGGTAAAAC
* ** *
64330423 GGTAATTTTGTAAATTGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTTAGTAATTTTAC
1 GGTAATTTTATAAACCGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTAC
* * *
64330488 AAATCGAGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTCGATAATTTTACAAATCGAGGGT
66 AAATCAAGGGTATTTTAGTAATTTTACAAACTGAAGGTATTTCGATAATTTTACAAATCGAGGGT
* *
64330553 ATTTCAGTAATTTTACAATCAACGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATT
131 ATTTCAGTAATTTTACAATCAACGCTATTTCGATAATTTTAC-AATCGAGGCTATTTCAGTAATT
64330618 TTACAATCAACAGTATTTCGGTAATTTGATATTTG
195 TTACAATCAACAGTATTTCGGTAATTTGATATTTG
*
64330653 GGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTAC
1 GGTAATTTTATAAACCGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTAC
*
64330718 AAATCAAGGGTATTTTAGTAATTTTACAAACTGAAGGTATTTCGGTAATTTTACAAATCGAGGGT
66 AAATCAAGGGTATTTTAGTAATTTTACAAACTGAAGGTATTTCGATAATTTTACAAATCGAGGGT
* * * * * *
64330783 ATTTTAGTAATTTTACAATCGATGCTATTTCGGTAATTTTACAATCGATGCTATTTCGGTAATTT
131 ATTTCAGTAATTTTACAATCAACGCTATTTCGATAATTTTACAATCGAGGCTATTTCAGTAATTT
64330848 TA
196 TA
64330850 TAAACTGGGG
Statistics
Matches: 180, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
229 22 0.12
230 158 0.88
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (229 bp):
GGTAATTTTATAAACCGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTAC
AAATCAAGGGTATTTTAGTAATTTTACAAACTGAAGGTATTTCGATAATTTTACAAATCGAGGGT
ATTTCAGTAATTTTACAATCAACGCTATTTCGATAATTTTACAATCGAGGCTATTTCAGTAATTT
TACAATCAACAGTATTTCGGTAATTTGATATTTG
Found at i:64334179 original size:40 final size:40
Alignment explanation
Indices: 64334124--64334300 Score: 259
Period size: 40 Copynumber: 4.5 Consensus size: 40
64334114 TATTCGGATG
* *
64334124 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
64334164 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
64334204 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
64334244 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
64334284 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
64334301 AAAGATACTT
Statistics
Matches: 125, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 9 0.07
40 114 0.91
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:64337128 original size:17 final size:16
Alignment explanation
Indices: 64337106--64337139 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
64337096 CATTTTTTAA
*
64337106 TTTTTACTTTAATATTT
1 TTTTTAATTTAAT-TTT
64337123 TTTTTAATTTAATTTT
1 TTTTTAATTTAATTTT
64337139 T
1 T
64337140 ACATTCTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTTAATTTAATTTT
Found at i:64337153 original size:28 final size:29
Alignment explanation
Indices: 64337101--64337160 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
64337091 TTAGCCATTT
* *
64337101 TTTAATTTTTACTTTAATATTTTTTTTAA
1 TTTAATTTTTACATTAATAATTTTTTTAA
* *
64337130 TTTAATTTTTACATT-CTAATTTTTTTCA
1 TTTAATTTTTACATTAATAATTTTTTTAA
64337158 TTT
1 TTT
64337161 GTTTGCTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 13 0.48
29 14 0.52
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (29 bp):
TTTAATTTTTACATTAATAATTTTTTTAA
Found at i:64344558 original size:13 final size:13
Alignment explanation
Indices: 64344540--64344580 Score: 82
Period size: 13 Copynumber: 3.2 Consensus size: 13
64344530 CTAAGCCACC
64344540 TCACACGGGCATG
1 TCACACGGGCATG
64344553 TCACACGGGCATG
1 TCACACGGGCATG
64344566 TCACACGGGCATG
1 TCACACGGGCATG
64344579 TC
1 TC
64344581 CTTGTCGAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (13 bp):
TCACACGGGCATG
Found at i:64346409 original size:25 final size:27
Alignment explanation
Indices: 64346381--64346432 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
64346371 TTAAAGAGAG
*
64346381 ACCACAT-AAA-AGAAATATGGTAAAT
1 ACCACATAAAATAAAAATATGGTAAAT
*
64346406 ACCATATAAAATAAAAATATGGTAAAT
1 ACCACATAAAATAAAAATATGGTAAAT
64346433 TTCTTAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 6 0.26
26 3 0.13
27 14 0.61
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.23
Consensus pattern (27 bp):
ACCACATAAAATAAAAATATGGTAAAT
Found at i:64347670 original size:55 final size:55
Alignment explanation
Indices: 64347600--64347706 Score: 132
Period size: 55 Copynumber: 1.9 Consensus size: 55
64347590 ATTGAAACAA
*
64347600 AAAAAAACTTTCATTCATTATCATTT-T-TTTAATT-TTAAAAAAATTGAAAAAACTTC
1 AAAAAAACTTACATTCATT-T--TTTATATTT-ATTATTAAAAAAATTGAAAAAACTTC
64347656 AAAAAAA-TTACATTCATTTTTTATATTTATTACTTAAAAAAATTGAAAAAA
1 AAAAAAACTTACATTCATTTTTTATATTTATTA-TTAAAAAAATTGAAAAAA
64347707 AATTGCCAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
52 3 0.07
53 4 0.09
54 4 0.09
55 28 0.61
56 7 0.15
ACGTcount: A:0.50, C:0.08, G:0.02, T:0.40
Consensus pattern (55 bp):
AAAAAAACTTACATTCATTTTTTATATTTATTATTAAAAAAATTGAAAAAACTTC
Found at i:64348511 original size:11 final size:12
Alignment explanation
Indices: 64348495--64348523 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
64348485 TTGTTCTCCC
64348495 TTTATTTTA-TA
1 TTTATTTTATTA
64348506 TTTATTTTATTA
1 TTTATTTTATTA
64348518 TTTATT
1 TTTATT
64348524 ATTCTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTATTTTATTA
Done.