Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 196 of 352
Found at i:64673793 original size:44 final size:38
Alignment explanation
Indices: 64673716--64673790 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
64673706 TTCATCCTTT
64673716 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
64673754 TTCATTTCTTTTGGCCGAAAATTCTAAGG-AGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
64673791 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 8 0.22
38 29 0.78
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:64675071 original size:40 final size:40
Alignment explanation
Indices: 64674977--64675120 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
64674967 TACTCGAATG
*
64674977 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGCGACT
* * *
64675018 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGCGACT
* *
64675058 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACT
* *
64675098 ATATCCGGGTTAAG-ACCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
64675121 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 9 0.10
40 53 0.59
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACT
Found at i:64679231 original size:17 final size:18
Alignment explanation
Indices: 64679205--64679239 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
64679195 TTAAAAATAC
*
64679205 TTTTTATGAAAATAATTA
1 TTTTTATGAAAACAATTA
64679223 TTTTT-TGAAAACAATTA
1 TTTTTATGAAAACAATTA
64679240 CAAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (18 bp):
TTTTTATGAAAACAATTA
Found at i:64697072 original size:25 final size:25
Alignment explanation
Indices: 64697043--64697090 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64697033 TTATAATATG
* * *
64697043 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
64697068 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
64697091 GTTTATATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:64697132 original size:17 final size:18
Alignment explanation
Indices: 64697110--64697143 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
64697100 TGAATTTAAT
64697110 ACATGGGAT-TTTGATAA
1 ACATGGGATGTTTGATAA
*
64697127 ACATGGTATGTTTGATA
1 ACATGGGATGTTTGATA
64697144 TGCACATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (18 bp):
ACATGGGATGTTTGATAA
Found at i:64697193 original size:20 final size:20
Alignment explanation
Indices: 64697127--64697193 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
64697117 ATTTTGATAA
* *
64697127 ACATGGTATGTTTGATATGC
1 ACATGATATGTATGATATGC
*
64697147 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
64697167 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
64697187 ACGTGAT
1 ACATGAT
64697194 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:64697274 original size:24 final size:24
Alignment explanation
Indices: 64697242--64697482 Score: 376
Period size: 24 Copynumber: 10.0 Consensus size: 24
64697232 GGAGGAAGTG
64697242 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
64697266 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
64697290 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
64697314 TAAAATGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
64697338 CAAAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
64697362 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
64697386 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
64697410 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
64697434 TAAACGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
64697458 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
64697483 ATGATAAAGC
Statistics
Matches: 201, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
24 190 0.95
25 11 0.05
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:64704596 original size:43 final size:43
Alignment explanation
Indices: 64704539--64704621 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
64704529 TCCACACGAA
* * *
64704539 CGTGTGCCTTAGTCACACA-GCCATGTGCCTCTCTTTACACGGG
1 CGTGTGCCTCAGTCACA-AGGCCATGTGCCCCTCTTCACACGGG
*
64704582 CGTGTGCCTCAGTCACAAGGCTATGTGCCCCTCTTCACAC
1 CGTGTGCCTCAGTCACAAGGCCATGTGCCCCTCTTCACAC
64704622 AGGCTTTTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 1 0.03
43 34 0.97
ACGTcount: A:0.17, C:0.35, G:0.22, T:0.27
Consensus pattern (43 bp):
CGTGTGCCTCAGTCACAAGGCCATGTGCCCCTCTTCACACGGG
Found at i:64711751 original size:28 final size:29
Alignment explanation
Indices: 64711711--64711797 Score: 115
Period size: 28 Copynumber: 3.1 Consensus size: 29
64711701 CATGACTGTA
*
64711711 AATGTGATTTGGGCCTAGT-GGCCATATG
1 AATGTGATTTGGGCCTAATAGGCCATATG
* * *
64711739 AATGTGATTTGGGCTTAATAGGCCACATT
1 AATGTGATTTGGGCCTAATAGGCCATATG
*
64711768 AATGTGA-TTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATAGGCCATATG
64711796 AA
1 AA
64711798 AGAGATTGTA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
28 36 0.72
29 14 0.28
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATAGGCCATATG
Found at i:64713611 original size:25 final size:25
Alignment explanation
Indices: 64713579--64713648 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
64713569 CTCTTTTAAT
64713579 AATTGGGGCAAAGCCC-TTTCTGATA
1 AATTGGGGCAAAGCCCTTTTC-GATA
64713604 AATTGGGGCAAAGCCCTTTTCGATA
1 AATTGGGGCAAAGCCCTTTTCGATA
* *
64713629 AACTGGGGCAGAGCCCTTTT
1 AATTGGGGCAAAGCCCTTTT
64713649 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (25 bp):
AATTGGGGCAAAGCCCTTTTCGATA
Found at i:64714509 original size:27 final size:27
Alignment explanation
Indices: 64714479--64714530 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
64714469 TACAAAGGTA
64714479 TTACGGTCACTTTACCCTA-TAGGGGCT
1 TTACGGTCACTTTA-CCTATTAGGGGCT
**
64714506 TTACGGTCTTTTTACCTATTAGGGG
1 TTACGGTCACTTTACCTATTAGGGG
64714531 TATTTTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (27 bp):
TTACGGTCACTTTACCTATTAGGGGCT
Found at i:64714595 original size:27 final size:27
Alignment explanation
Indices: 64714552--64714761 Score: 134
Period size: 27 Copynumber: 7.7 Consensus size: 27
64714542 TTTCATCTTA
* * *
64714552 CAAGGGTGTTTTGGTAATTCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
64714579 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
** ** * *
64714606 CAAAAGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTACAAA-C
** * *
64714635 CAAGGGTATTTCTATAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * * *
64714662 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
64714689 TAAAGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTCGGTAATTTTACAAAC
* *
64714715 CTAGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTACAAAC
* * *
64714743 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
64714762 CTATCCTACA
Statistics
Matches: 145, Mismatches: 34, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
26 1 0.01
27 113 0.78
28 16 0.11
29 15 0.10
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAC
Found at i:64714780 original size:54 final size:54
Alignment explanation
Indices: 64714639--64714761 Score: 156
Period size: 54 Copynumber: 2.3 Consensus size: 54
64714629 GAAAGTCAAG
** * * * *
64714639 GGTATTTCTATAATTTTATAAATTAGGGGTATTTTGGTAATTTTACAAATTAAA
1 GGTATTTCGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAA
* **
64714693 GGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTCGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAA
*
64714747 GGTATTTTGGTAATT
1 GGTATTTCGGTAATT
64714762 CTATCCTACA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.44
Consensus pattern (54 bp):
GGTATTTCGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAA
Found at i:64714823 original size:27 final size:27
Alignment explanation
Indices: 64714793--64714938 Score: 220
Period size: 27 Copynumber: 5.4 Consensus size: 27
64714783 TTAATTTCAC
* * * *
64714793 AATCAAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
64714820 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
64714847 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
64714874 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
**
64714901 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
64714928 AATCGAGGGTA
1 AATCGAGGGTA
64714939 CTTTGGTAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 109 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:64714961 original size:54 final size:54
Alignment explanation
Indices: 64714793--64714963 Score: 225
Period size: 54 Copynumber: 3.2 Consensus size: 54
64714783 TTAATTTCAC
* * *
64714793 AATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
* * *
64714847 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
* * *** *
64714901 AATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
*
64714955 AGTCGAGGG
1 AATCGAGGG
64714964 CATTTCAATA
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 103 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACA
Found at i:64714961 original size:81 final size:80
Alignment explanation
Indices: 64714784--64714963 Score: 236
Period size: 81 Copynumber: 2.2 Consensus size: 80
64714774 GGTATTTCAT
* * * * *
64714784 TAATTTCACAATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAA
1 TAATTTTACAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAA
64714849 TCGAGGGTAAAACGG
66 TCGAGGGTAAAACGG
*
64714864 TAATTCTGTA-AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATA
1 TAATT-T-TACAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATA
****
64714928 AATCGAGGGTACTTTGG
64 AATCGAGGGTAAAACGG
64714945 TAATTTTACAAGTCGAGGG
1 TAATTTTACAA-TCGAGGG
64714964 CATTTCAATA
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
79 2 0.02
80 8 0.09
81 75 0.87
82 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.29
Consensus pattern (80 bp):
TAATTTTACAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAA
TCGAGGGTAAAACGG
Found at i:64720179 original size:37 final size:37
Alignment explanation
Indices: 64720137--64720207 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
64720127 GGGACATGGC
*
64720137 GTCGGCATTGAGATG-AGAGCTAGTGTAAGACATGCAT
1 GTCGGCATTGAGATGTA-AGCCAGTGTAAGACATGCAT
*
64720174 GTCGGCCTTGAGATGTAAGCCAGTGTAAGACATG
1 GTCGGCATTGAGATGTAAGCCAGTGTAAGACATG
64720208 TCTGGGACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 30 0.97
38 1 0.03
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.24
Consensus pattern (37 bp):
GTCGGCATTGAGATGTAAGCCAGTGTAAGACATGCAT
Found at i:64720300 original size:49 final size:47
Alignment explanation
Indices: 64720190--64720363 Score: 164
Period size: 47 Copynumber: 3.7 Consensus size: 47
64720180 CTTGAGATGT
*
64720190 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-C-T-ACATGA
1 AAGCCAGTGTAAGACCATGTCTAGGACATGGCAT-GGACTTAACATGA
** * *
64720233 TGTGTCAGTGTAAGACCATGTCTAGGACATGGCATGG-CATGGATAA-GTGA
1 -AAGCCAGTGTAAGACCATGTCTAGGACATGGCATGGAC-T---TAACATGA
* *
64720283 AAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACTTAACATGA
1 AAGCCAGTGTAAGACCATGTCTAGGACATGGCATGGACTTAACATGA
* *
64720330 GAGCTAGTGTAAGACCATGTCTAGGACATGGCAT
1 AAGCCAGTGTAAGACCATGTCTAGGACATGGCAT
64720364 CGACATTATA
Statistics
Matches: 106, Mismatches: 14, Indels: 17
0.77 0.10 0.12
Matches are distributed among these distances:
44 11 0.10
45 16 0.15
46 7 0.07
47 34 0.32
49 32 0.30
50 5 0.05
51 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AAGCCAGTGTAAGACCATGTCTAGGACATGGCATGGACTTAACATGA
Found at i:64720355 original size:96 final size:93
Alignment explanation
Indices: 64720190--64720363 Score: 262
Period size: 96 Copynumber: 1.8 Consensus size: 93
64720180 CTTGAGATGT
* *
64720190 AAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACATGATGTGTCAGTGTAAGACCATGTC
1 AAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTACATGATGAGTCAGTGTAAGACCATGTC
64720255 TAGGACATGGCATGGCATGGATAAGTGA
66 TAGGACATGGCATGGCATGGATAAGTGA
*
64720283 AAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACTTAACATGA-GAG-CTAGTGTAAGACC
1 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-T-ACATGATGAGTC-AGTGTAAGACC
64720346 ATGTCTAGGACATGGCAT
61 ATGTCTAGGACATGGCAT
64720364 CGACATTATA
Statistics
Matches: 73, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
93 14 0.19
94 14 0.19
95 7 0.10
96 32 0.44
97 6 0.08
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24
Consensus pattern (93 bp):
AAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTACATGATGAGTCAGTGTAAGACCATGTC
TAGGACATGGCATGGCATGGATAAGTGA
Found at i:64731692 original size:41 final size:42
Alignment explanation
Indices: 64731628--64731711 Score: 161
Period size: 41 Copynumber: 2.0 Consensus size: 42
64731618 TATTAAACCA
64731628 TGCAATTGTTCAAGTAATTGCACTGCAAAATCAAATGGGTTT
1 TGCAATTGTTCAAGTAATTGCACTGCAAAATCAAATGGGTTT
64731670 TGCAATTGTTC-AGTAATTGCACTGCAAAATCAAATGGGTTT
1 TGCAATTGTTCAAGTAATTGCACTGCAAAATCAAATGGGTTT
64731711 T
1 T
64731712 AGTATGGGTC
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 31 0.74
42 11 0.26
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (42 bp):
TGCAATTGTTCAAGTAATTGCACTGCAAAATCAAATGGGTTT
Found at i:64734851 original size:11 final size:10
Alignment explanation
Indices: 64734831--64734863 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
64734821 ATATTTTTTC
64734831 AAACTTAATT
1 AAACTTAATT
64734841 AAACTTTAATT
1 AAAC-TTAATT
64734852 AAA-TTAATT
1 AAACTTAATT
64734861 AAA
1 AAA
64734864 ATAATTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.41
10 4 0.18
11 9 0.41
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (10 bp):
AAACTTAATT
Found at i:64741432 original size:17 final size:19
Alignment explanation
Indices: 64741378--64741442 Score: 71
Period size: 17 Copynumber: 3.5 Consensus size: 19
64741368 AGTAAAAGTT
* *
64741378 ATAAAAAAATTAAATATGTA
1 ATAAAAATATTAAAAAT-TA
* *
64741398 AAAAAAATATTAAAAATTT
1 ATAAAAATATTAAAAATTA
64741417 ATAAAAATA-T-AAAATTA
1 ATAAAAATATTAAAAATTA
64741434 ATAAAAATA
1 ATAAAAATA
64741443 GACATTTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
17 15 0.38
18 1 0.03
19 9 0.23
20 14 0.36
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
ATAAAAATATTAAAAATTA
Found at i:64741439 original size:39 final size:40
Alignment explanation
Indices: 64741361--64741440 Score: 92
Period size: 39 Copynumber: 2.0 Consensus size: 40
64741351 AAAAATTCTT
* *
64741361 AAATATTAGTAAAAGTTATAAAAAAATTAAATATGTAAAAA
1 AAATATTAG-AAAAGTTATAAAAAAATAAAATATATAAAAA
* *
64741402 AAATATTA-AAAATTTATAAAAATATAAAAT-TAATAAAAA
1 AAATATTAGAAAAGTTATAAAAAAATAAAATAT-ATAAAAA
64741441 TAGACATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
38 1 0.03
39 25 0.74
41 8 0.24
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (40 bp):
AAATATTAGAAAAGTTATAAAAAAATAAAATATATAAAAA
Found at i:64741614 original size:19 final size:20
Alignment explanation
Indices: 64741592--64741630 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
64741582 GGTGTTCTAG
*
64741592 AATTATTAAAAAT-ATTAAT
1 AATTATAAAAAATCATTAAT
64741611 AATTATAAAAAATCATTAAT
1 AATTATAAAAAATCATTAAT
64741631 GTCGCATCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
AATTATAAAAAATCATTAAT
Found at i:64747747 original size:39 final size:39
Alignment explanation
Indices: 64747663--64747819 Score: 210
Period size: 39 Copynumber: 4.0 Consensus size: 39
64747653 CCAAATCAAT
* *
64747663 CACCACCAC-AAAGCATGCGGGACTTTAAGCCCGGATATAA
1 CACCAGCACGAAAGCCTGCGGGAC-TT-AGCCCGGATATAA
*
64747703 TACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTGCGGGAC-TTAGCCCGGATATAA
* *
64747742 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTGCGGGACTTAGCCCGGATATAA
* *
64747781 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTGCGGGACTTAGCCCGGATATAA
64747820 TTCTCCATTA
Statistics
Matches: 110, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 75 0.68
40 35 0.32
ACGTcount: A:0.31, C:0.30, G:0.22, T:0.17
Consensus pattern (39 bp):
CACCAGCACGAAAGCCTGCGGGACTTAGCCCGGATATAA
Found at i:64751462 original size:16 final size:16
Alignment explanation
Indices: 64751428--64751470 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
64751418 ATTGCCAAAT
* **
64751428 TTTTGACTTTTTGGTA
1 TTTTGACTTTTCGACA
64751444 TTTTGACTTTTCGACA
1 TTTTGACTTTTCGACA
*
64751460 TTTCGACTTTT
1 TTTTGACTTTT
64751471 GCTGATCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.58
Consensus pattern (16 bp):
TTTTGACTTTTCGACA
Found at i:64754932 original size:47 final size:46
Alignment explanation
Indices: 64754863--64755081 Score: 173
Period size: 47 Copynumber: 4.7 Consensus size: 46
64754853 TGTGAGAGCC
* * * *
64754863 AGTGCAAGACCA-GTTTGAGACATGGCATCGACATCGAGACGAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TCGAGACGA-AGCT
* *
64754910 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGACG-AAGCT
* *
64754956 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGATAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGACGA-AGCT
* *
64755001 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGA-TATGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGACGA--AGCT
* * * * *
64755049 TGTGTAAGAGCATGTTTAGGACATGACATCGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC
64755082 ACCTTACCCC
Statistics
Matches: 144, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
45 4 0.03
46 63 0.44
47 68 0.47
48 9 0.06
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGACGAAGCT
Found at i:64754947 original size:46 final size:44
Alignment explanation
Indices: 64754881--64755032 Score: 162
Period size: 46 Copynumber: 3.2 Consensus size: 44
64754871 ACCAGTTTGA
*
64754881 GACATGGCATCGACATCGAGACGAGTGCTAGTGTAAGACATGTCTGG
1 GACAT-GCATCG-CCTCGAGACGA-TGCTAGTGTAAGACATGTCTGG
* *
64754928 GACATGCATCAGCCTCGAGACGTAAGCCAGTGTAAGACATGTCTGG
1 GACATGCATC-GCCTCGAGACG-ATGCTAGTGTAAGACATGTCTGG
* *
64754974 GACATGCATCGGCTACGAGATGATAG-TCAGTGTAAGACCATGTCTGG
1 GACATGCATCGCCT-CGAGACGAT-GCT-AGTGTAAGA-CATGTCTGG
64755021 GACATGGCATCG
1 GACAT-GCATCG
64755033 ACTTGAGATA
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
45 4 0.04
46 60 0.66
47 21 0.23
48 6 0.07
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (44 bp):
GACATGCATCGCCTCGAGACGATGCTAGTGTAAGACATGTCTGG
Found at i:64754978 original size:93 final size:94
Alignment explanation
Indices: 64754859--64755031 Score: 214
Period size: 93 Copynumber: 1.9 Consensus size: 94
64754849 ATATTGTGAG
*
64754859 AGCCAGTGCAAGACCAGTTTGAGACATGGCATCGAC-ATCGAGACG--AGTGCTAGTGTAAGA-C
1 AGCCAGTGCAAGACCAGTCTGAGACAT-GCATCGACTA-CGAGACGATAGT-C-AGTGTAAGACC
64754920 ATGTCTGGGACAT-GCATCAGCCTCGAGACGTA
62 ATGTCTGGGACATGGCATCAGCCTCGAGACGTA
* * * *
64754952 AGCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACGAGATGATAGTCAGTGTAAGACCATG
1 AGCCAGTGCAAGACCA-GTCTGAGACATGCATCGACTACGAGACGATAGTCAGTGTAAGACCATG
64755016 TCTGGGACATGGCATC
65 TCTGGGACATGGCATC
64755032 GACTTGAGAT
Statistics
Matches: 69, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
92 24 0.35
93 37 0.54
94 8 0.12
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (94 bp):
AGCCAGTGCAAGACCAGTCTGAGACATGCATCGACTACGAGACGATAGTCAGTGTAAGACCATGT
CTGGGACATGGCATCAGCCTCGAGACGTA
Found at i:64755054 original size:93 final size:94
Alignment explanation
Indices: 64754910--64755079 Score: 220
Period size: 93 Copynumber: 1.8 Consensus size: 94
64754900 GACGAGTGCT
* * *
64754910 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGCCAGTGTAAGA-CATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGACTCGAGACATAAGCCAGTGTAAGAGCATGTCTAG
64754974 GACATG-CATCGGCTACGAGATGATAGTC
66 GACATGACATCGGCTACGAGATGATAGTC
* * * ** *
64755002 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATATGAGCTTGTGTAAGAGCATGTTT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGACTCGAGACATAAGCCAGTGTAAGAGCATGTCT
64755066 AGGACATGACATCG
64 AGGACATGACATCG
64755080 ACACCTTACC
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
92 9 0.14
93 33 0.51
94 18 0.28
95 5 0.08
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGACTCGAGACATAAGCCAGTGTAAGAGCATGTCTAG
GACATGACATCGGCTACGAGATGATAGTC
Found at i:64757328 original size:46 final size:46
Alignment explanation
Indices: 64757261--64757438 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
64757251 TGTAACTCGC
*
64757261 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * * * *
64757307 CCATAAGTGAACTCAGTCTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * * **
64757353 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
64757400 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
64757439 CCCAAACATC
Statistics
Matches: 102, Mismatches: 27, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
46 70 0.69
47 32 0.31
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:64757382 original size:93 final size:93
Alignment explanation
Indices: 64757269--64757440 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
64757259 GCCCATAAGT
*** *
64757269 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCAGTCTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
64757334 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
64757362 GAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
64757427 CGAGCTCGGATGCC
66 CGAGCTCGGATGCC
64757441 CAAACATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:64762820 original size:45 final size:45
Alignment explanation
Indices: 64762756--64762929 Score: 217
Period size: 45 Copynumber: 3.8 Consensus size: 45
64762746 TGTAACCCGC
*
64762756 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
*
64762801 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
64762847 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
64762894 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
64762930 ATGCCCAAAA
Statistics
Matches: 110, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 36 0.33
46 33 0.30
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:64762922 original size:93 final size:92
Alignment explanation
Indices: 64762764--64762934 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 92
64762754 GCCCATAAGT
*
64762764 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
64762829 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
*
64762856 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
64762921 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
64762935 CAAAATCCTA
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 27 0.36
93 48 0.64
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:64801967 original size:40 final size:40
Alignment explanation
Indices: 64801907--64802135 Score: 316
Period size: 40 Copynumber: 5.7 Consensus size: 40
64801897 TATTCGGATG
* * * *
64801907 ATAATCGGGCTAAGTCCCGAAGGCATTTTTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
64801947 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
64801987 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
64802027 ATATCCGGGCTAAGTTCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
64802067 ATAACCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
64802107 ATAACTGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
64802136 AGCTAGTAGC
Statistics
Matches: 164, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 1 0.01
40 162 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:64802125 original size:120 final size:120
Alignment explanation
Indices: 64801912--64802135 Score: 360
Period size: 120 Copynumber: 1.9 Consensus size: 120
64801902 GGATGATAAT
** * *
64801912 CGGGCTAAGTCCCGAAGGCATTTTTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTGT
*
64801977 GTGAGTTACTATAACTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTATATC
66 GCGAGTTACTATAACTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTATATC
* * *
64802032 CGGGCTAAGTTCCGAAGGCATTCGTGCGAGTTACT-ATAACCGGGCTAGGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGCATTTG
64802096 TGCGAGTTACTATAACTGGGCTAAGTCCCGAAGGCATTTG
65 TGCGAGTTACTATAACTGGGCTAAGTCCCGAAGGCATTTG
64802136 AGCTAGTAGC
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
119 2 0.02
120 93 0.98
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (120 bp):
CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATAACTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTATATC
Found at i:64802150 original size:120 final size:120
Alignment explanation
Indices: 64801912--64802168 Score: 358
Period size: 120 Copynumber: 2.1 Consensus size: 120
64801902 GGATGATAAT
* ** * *
64801912 CGGGCTAAGTCCCGAAGGCATTTTTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTTCCGAAGGCATTCGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTGT
* * *
64801977 GTGAGTTACTATAACTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTATATC
66 GCGAGTTACTATAACTGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACTATATC
* *
64802032 CGGGCTAAGTTCCGAAGGCATTCGTGCGAGTTACT-ATAACCGGGCTAGGTCCCGAAGGCATTTG
1 CGGGCTAAGTTCCGAAGGCATTCGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGCATTTG
*
64802096 TGCGAGTTACTATAACTGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATC
65 TGCGAGTTACTATAACTGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CTATATC
**
64802152 C-GGCTAAACTCCGAAGG
1 CGGGCTAAGTTCCGAAGG
64802169 TACTTGGTTT
Statistics
Matches: 122, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
119 18 0.15
120 104 0.85
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (120 bp):
CGGGCTAAGTTCCGAAGGCATTCGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATAACTGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACTATATC
Found at i:64810885 original size:14 final size:14
Alignment explanation
Indices: 64810863--64810896 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
64810853 AATCTTAATC
*
64810863 TGTATTTATGTGTG
1 TGTAATTATGTGTG
64810877 TGTAATTATGTGTG
1 TGTAATTATGTGTG
64810891 TGTAAT
1 TGTAAT
64810897 CCTAATGGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (14 bp):
TGTAATTATGTGTG
Found at i:64811770 original size:19 final size:19
Alignment explanation
Indices: 64811734--64811772 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
64811724 TTTTCATCAT
* *
64811734 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
64811753 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
64811772 A
1 A
64811773 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:64812276 original size:55 final size:56
Alignment explanation
Indices: 64812211--64812325 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
64812201 AGCATGGCTG
* *
64812211 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
64812267 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
64812322 CCAG
1 CCAG
64812326 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:64812288 original size:27 final size:27
Alignment explanation
Indices: 64812236--64812325 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
64812226 GTGACAGAGT
64812236 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
64812265 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
64812292 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
64812320 CACCAG
1 CACCAG
64812326 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:64812478 original size:28 final size:28
Alignment explanation
Indices: 64812431--64812495 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
64812421 AAATTAACCC
*
64812431 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
64812459 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
64812487 TAGGGGTAT
1 TAGGGGTAT
64812496 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:64812764 original size:16 final size:15
Alignment explanation
Indices: 64812743--64812773 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
64812733 CCAAAATAGC
64812743 GGCTTTTCGGCATTTT
1 GGCTTTTCGGC-TTTT
64812759 GGCTTTTCGGCTTTT
1 GGCTTTTCGGCTTTT
64812774 ACCGATCTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.03, C:0.19, G:0.26, T:0.52
Consensus pattern (15 bp):
GGCTTTTCGGCTTTT
Found at i:64818694 original size:40 final size:40
Alignment explanation
Indices: 64818650--64818841 Score: 287
Period size: 40 Copynumber: 4.8 Consensus size: 40
64818640 GGATATAGCT
* * * *
64818650 ACTCGCTCGAATGCCTTCGGGGCATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
64818690 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
64818730 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
64818770 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
64818810 GCTCGCACAAATGCCTTTGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
64818842 TTATCATCCG
Statistics
Matches: 142, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 140 0.99
41 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:64826935 original size:40 final size:40
Alignment explanation
Indices: 64826754--64826936 Score: 233
Period size: 40 Copynumber: 4.6 Consensus size: 40
64826744 TACTCGCTCG
* * * * * *
64826754 AATGCCTTCGGGGCATAGCCC-GGTTATAGTAACTCGTACC
1 AATGCCTTCGGGACTTAGCCCAGATT-TAGTAACTAGCACA
* *
64826794 AATGCCTTCGGGACTTAGCCCGGATTTGGTAACTAGCACA
1 AATGCCTTCGGGACTTAGCCCAGATTTAGTAACTAGCACA
* *
64826834 AATGCCTTCGGGACTTAGCCCGGATTTGGTAACTAGCACA
1 AATGCCTTCGGGACTTAGCCCAGATTTAGTAACTAGCACA
* * *
64826874 AATGCCTTCGAGACTTAGCCCAGATTTAGTAGCTCGCACA
1 AATGCCTTCGGGACTTAGCCCAGATTTAGTAACTAGCACA
64826914 AATGCCTTCGGGACTTAGCCCAG
1 AATGCCTTCGGGACTTAGCCCAG
64826937 TTATCATCCG
Statistics
Matches: 129, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 126 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCAGATTTAGTAACTAGCACA
Found at i:64834462 original size:38 final size:38
Alignment explanation
Indices: 64834419--64834593 Score: 208
Period size: 38 Copynumber: 4.5 Consensus size: 38
64834409 AGCTTAAAGA
* * *
64834419 CCCGCAGGCTAT-ATGCTGGAATTATATCCGGGCTAAAT
1 CCCGCAGGCT-TCGTGCTGGTATTATATCCGGGTTAAAT
*
64834457 CCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
64834495 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAGT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAA-T
* * * **
64834534 CCCGCAGGCCTAGTGCTGGTATTATATCTGAACTTAAAGT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCG-GGTTAAA-T
* *
64834574 CCCGCAGGTTTTGTGCTGGT
1 CCCGCAGGCTTCGTGCTGGT
64834594 GACTAGATTC
Statistics
Matches: 121, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
37 1 0.01
38 68 0.56
39 28 0.23
40 24 0.20
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
Found at i:64838068 original size:19 final size:19
Alignment explanation
Indices: 64838044--64838090 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
64838034 CGGGCCGCGA
*
64838044 TGGGCCGAAAGGGGCTATG
1 TGGGCCCAAAGGGGCTATG
* *
64838063 TGGGCCCAATGGTGCTATG
1 TGGGCCCAAAGGGGCTATG
64838082 TGGGCCCAA
1 TGGGCCCAA
64838091 TGGGCCTACG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.19, C:0.21, G:0.40, T:0.19
Consensus pattern (19 bp):
TGGGCCCAAAGGGGCTATG
Found at i:64838091 original size:19 final size:19
Alignment explanation
Indices: 64838057--64838093 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
64838047 GCCGAAAGGG
64838057 GCTATGTGGGCCCAATGGT
1 GCTATGTGGGCCCAATGGT
64838076 GCTATGTGGGCCCAATGG
1 GCTATGTGGGCCCAATGG
64838094 GCCTACGAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.22, G:0.38, T:0.24
Consensus pattern (19 bp):
GCTATGTGGGCCCAATGGT
Found at i:64838553 original size:27 final size:27
Alignment explanation
Indices: 64838530--64838713 Score: 174
Period size: 27 Copynumber: 6.8 Consensus size: 27
64838520 TTACCCTCGA
**
64838530 TTGTAAAATTACTGAAATACCCCT-GT
1 TTGTAAAATTACCAAAATACCCCTAGT
** * * *
64838556 AGGATAGAATTACCAAAATACCCTTGGT
1 TTG-TAAAATTACCAAAATACCCCTAGT
*
64838584 TTGTAAAATTACTAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* *
64838611 TTGTAAAATTACCGAAATACCACTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * * *
64838638 TTGTGAAATTACCGAAATACCCTTAAT
1 TTGTAAAATTACCAAAATACCCCTAGT
* *
64838665 TTGTAAAATTACCAAAATACCCTTAAT
1 TTGTAAAATTACCAAAATACCCCTAGT
**
64838692 TTACAAAATTA-CAGAAATACCC
1 TTGTAAAATTACCA-AAATACCC
64838714 TTGACCTTCT
Statistics
Matches: 132, Mismatches: 23, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
26 3 0.02
27 126 0.95
28 3 0.02
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:64838648 original size:81 final size:81
Alignment explanation
Indices: 64838563--64838712 Score: 219
Period size: 81 Copynumber: 1.9 Consensus size: 81
64838553 TGTAGGATAG
** * * ** *
64838563 AATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCGAAA
1 AATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
64838628 TACCACTAGTTTGTGA
66 TACCACTAGTTTGTGA
* *
64838644 AATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCTTAATTTACAAAATTACAGAAA
1 AATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
64838709 TACC
66 TACC
64838713 CTTGACCTTC
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 60 1.00
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
TACCACTAGTTTGTGA
Found at i:64838714 original size:27 final size:27
Alignment explanation
Indices: 64838643--64838771 Score: 120
Period size: 27 Copynumber: 4.7 Consensus size: 27
64838633 CTAGTTTGTG
* **
64838643 AAATTACCGAAATACCCTTAATTTGTA
1 AAATTACAGAAATACCCTTAATTTACA
64838670 AAATTACCA-AAATACCCTTAATTTACA
1 AAATTA-CAGAAATACCCTTAATTTACA
*
64838697 AAATTACAGAAATACCCTTGACCTTCTA-A
1 AAATTACAGAAATACCCTT-A-ATT-TACA
* * **
64838726 AAATTATAGAAATACCATTGGTTTACA
1 AAATTACAGAAATACCCTTAATTTACA
64838753 AAATTACTA-AAATACCCTT
1 AAATTAC-AGAAATACCCTT
64838772 GGTTTGTAGA
Statistics
Matches: 85, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
26 4 0.05
27 56 0.66
28 3 0.04
29 20 0.24
30 2 0.02
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.31
Consensus pattern (27 bp):
AAATTACAGAAATACCCTTAATTTACA
Found at i:64838714 original size:54 final size:54
Alignment explanation
Indices: 64838563--64838791 Score: 203
Period size: 54 Copynumber: 4.2 Consensus size: 54
64838553 TGTAGGATAG
* ** *
64838563 AATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTACAAAATTACTAAAATACCCTTAGTTTGTAA
* *** ** *
64838617 AATTACCGAAATACCAC-TAGTTTGTGAAATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACC-CTTAGTTTACAAAATTACTAAAATACCCTTAGTTTGTAA
* ** *
64838671 AATTACCAAAATACCCTTAATTTACAAAATTAC-AGAAATACCCTTGACCTTCTAAA
1 AATTACCAAAATACCCTTAGTTTACAAAATTACTA-AAATACCCTT-AGTTTGT-AA
* * * * *
64838727 AATTA-TAGAAATACCATTGGTTTACAAAATTACTAAAATACCCTTGGTTTGTAG
1 AATTACCA-AAATACCCTTAGTTTACAAAATTACTAAAATACCCTTAGTTTGTAA
*
64838781 ATTTACCAAAA
1 AATTACCAAAA
64838792 CACCTTTGTA
Statistics
Matches: 140, Mismatches: 27, Indels: 16
0.77 0.15 0.09
Matches are distributed among these distances:
53 1 0.01
54 89 0.64
55 10 0.07
56 39 0.28
57 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (54 bp):
AATTACCAAAATACCCTTAGTTTACAAAATTACTAAAATACCCTTAGTTTGTAA
Found at i:64840227 original size:46 final size:46
Alignment explanation
Indices: 64840177--64840348 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
64840167 TGGTTGAGCA
64840177 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64840223 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
64840268 CATTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64840316 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
64840349 GTGGGCGGGT
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:64840342 original size:93 final size:93
Alignment explanation
Indices: 64840174--64840344 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
64840164 GGATGGTTGA
* *
64840174 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64840239 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
64840267 GCATTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64840332 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
64840345 ACTTGTGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64842343 original size:42 final size:42
Alignment explanation
Indices: 64842282--64842416 Score: 207
Period size: 42 Copynumber: 3.2 Consensus size: 42
64842272 TAGTCTCCCC
* *
64842282 AAATGGGCTTGCATTCATTCATTGACATTACATGTGATATTG
1 AAATGGGCCTGCATACATTCATTGACATTACATGTGATATTG
64842324 AAATGGGCCTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCCTGCATACATTCATTGACATTACATGTGATATTG
* * * *
64842366 AAATGGGCTTGCATACATCCATTGACGTTACATGGGATATTG
1 AAATGGGCCTGCATACATTCATTGACATTACATGTGATATTG
*
64842408 AAATTGGCC
1 AAATGGGCC
64842417 CAAGGGCCAT
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 85 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCCTGCATACATTCATTGACATTACATGTGATATTG
Found at i:64842474 original size:31 final size:31
Alignment explanation
Indices: 64842439--64842522 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
64842429 CGTTTACAGT
*
64842439 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
64842470 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
64842501 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
64842523 TCAAGACTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:64843705 original size:42 final size:42
Alignment explanation
Indices: 64843646--64843729 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
64843636 TAAACCCTCA
64843646 ACCATTTATTAATTGAGTATTTTAACTAATAAAAATCAATAT
1 ACCATTTATTAATTGAGTATTTTAACTAATAAAAATCAATAT
64843688 ACCATTTATTAATTGAGTATTTTAACTAATAAAAATCAATAT
1 ACCATTTATTAATTGAGTATTTTAACTAATAAAAATCAATAT
64843730 CGATTAACTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (42 bp):
ACCATTTATTAATTGAGTATTTTAACTAATAAAAATCAATAT
Found at i:64846980 original size:19 final size:20
Alignment explanation
Indices: 64846958--64847001 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
64846948 CTATTTTATT
64846958 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
64846977 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
64846997 ATGGG
1 ATGGG
64847002 TAAGGCCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:64855531 original size:47 final size:49
Alignment explanation
Indices: 64855474--64855626 Score: 194
Period size: 47 Copynumber: 3.2 Consensus size: 49
64855464 ACTATGAATT
* *
64855474 ATGAATGTGAAAGTGTATATACTGTTGATAAG-CGAATGGCC-AATGTG
1 ATGAATGTGAAAGTGTATATAATATTGATAAGCCGAATGGCCGAATGTG
*
64855521 -TGAAATGTGAAAGTGTATA-AATATTGATAAGCCTAATGGCCGAATGTG
1 ATG-AATGTGAAAGTGTATATAATATTGATAAGCCGAATGGCCGAATGTG
* *
64855569 ATGAATGTGAAAGTGTATATAAT-TGTGATAAGGCTAATGG-CG-ATGTG
1 ATGAATGTGAAAGTGTATATAATAT-TGATAAGCCGAATGGCCGAATGTG
64855616 ATGAATGTGAA
1 ATGAATGTGAA
64855627 TGATAATGCT
Statistics
Matches: 96, Mismatches: 4, Indels: 12
0.86 0.04 0.11
Matches are distributed among these distances:
46 12 0.12
47 40 0.42
48 25 0.26
49 19 0.20
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (49 bp):
ATGAATGTGAAAGTGTATATAATATTGATAAGCCGAATGGCCGAATGTG
Found at i:64855769 original size:43 final size:48
Alignment explanation
Indices: 64855721--64855844 Score: 165
Period size: 48 Copynumber: 2.7 Consensus size: 48
64855711 GTGATAACCG
*
64855721 ATGGCCAATGTGATGAAT-T-AAG-GCTATATATA-GTGATAGGCC-A
1 ATGGCCGATGTGATGAATGTAAAGTGCTATATATATGTGATAGGCCTA
64855764 ATGGCCGATGTGATGAATGTAGAAGTGCTATATATATGTGATAGGCCTA
1 ATGGCCGATGTGATGAATGTA-AAGTGCTATATATATGTGATAGGCCTA
64855813 AT-GCCGATGTGATGAATGTGAAAGT--TATATAT
1 ATGGCCGATGTGATGAATGT-AAAGTGCTATATAT
64855845 GTGACAGGGT
Statistics
Matches: 73, Mismatches: 1, Indels: 11
0.86 0.01 0.13
Matches are distributed among these distances:
43 17 0.23
44 1 0.01
46 10 0.14
47 10 0.14
48 31 0.42
49 4 0.05
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGGCCGATGTGATGAATGTAAAGTGCTATATATATGTGATAGGCCTA
Found at i:64858155 original size:40 final size:40
Alignment explanation
Indices: 64858086--64858279 Score: 233
Period size: 39 Copynumber: 5.0 Consensus size: 40
64858076 GGTTCTCGAC
*
64858086 GATG-ATCCAGGCTAAGTCCGAAGAGCATTCATGCTAGTT
1 GATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTT
64858125 GATGTATCCGGGCTTAAGTCCG-AGAGCATTCATG-TAG-T
1 GATGTATCCGGGC-TAAGTCCGAAGAGCATTCATGCTAGTT
* * * *
64858163 G-TATATCCGGGCTAAGTCCCGAAGGGCATT-GTGCTA-CT
1 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTT
* *
64858201 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTA-AT
1 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTT
*
64858241 GATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGT
64858280 AATATATCCG
Statistics
Matches: 134, Mismatches: 12, Indels: 17
0.82 0.07 0.10
Matches are distributed among these distances:
36 5 0.04
37 15 0.11
38 13 0.10
39 51 0.38
40 42 0.31
41 8 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTT
Found at i:64858217 original size:39 final size:40
Alignment explanation
Indices: 64858086--64858315 Score: 228
Period size: 39 Copynumber: 5.9 Consensus size: 40
64858076 GGTTCTCGAC
* * *
64858086 GATG-ATCCAGGCTAAGT-CCGAAGAGCATTCATGCTAGTT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA-AT
* *
64858125 GATGTATCCGGGCTTAAGT-CCG-AGAGCATTCATG-TAGT
1 GATGTATCCGGGC-TAAGTCCCGAAGAGCATTCGTGCTAAT
* * *
64858163 G-TATATCCGGGCTAAGTCCCGAAGGGCATT-GTGCTACT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAAT
* *
64858201 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAAT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAAT
*
64858241 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAAT
* * * *
64858280 AATATATCCGTG-TAA-ACCTCGAAGAGCATTCGTGCT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
64858316 GGTGTTATAT
Statistics
Matches: 164, Mismatches: 18, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
36 5 0.03
37 15 0.09
38 17 0.10
39 77 0.47
40 42 0.26
41 8 0.05
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAAT
Found at i:64858338 original size:117 final size:116
Alignment explanation
Indices: 64858097--64858371 Score: 301
Period size: 117 Copynumber: 2.4 Consensus size: 116
64858087 ATGATCCAGG
*
64858097 CTAAGT-CCGAAGAGCATTCATGCTAGTTGATGTATCCGGGCTTAAGTCCGAGAGCATTCATGTA
1 CTAAGTCCCGAAGAGCATTCATGCTA-ATGATGTATCCGGGCTTAAGTCCGAGAGCATTCATGTA
* * * *
64858161 GTGTATATCCGGGCTAAGTCCCGAAGGGCATTGTGCTACTGATGTATCCGGA
65 GTATATATCCGGGCTAAGACCCGAAGAGCATTGTGCTACTGATATATCCGGA
*
64858213 CTAAGTCCCGAAGAGCATTCATGCTAATGATGTATCCGGGC-TAAGTCCGAAGAGCATTCGTGCT
1 CTAAGTCCCGAAGAGCATTCATGCTAATGATGTATCCGGGCTTAAGTCCG-AGAGCATTCATG-T
* ** *
64858277 AGTAATATATCCGTG-TAA-ACCTCGAAGAGCATTCGTGCTGGTGTTATAT-CGG-
64 AGT-ATATATCCGGGCTAAGACC-CGAAGAGCATT-GTGCTACTGATATATCCGGA
* * ** *
64858329 CATAGGTCCCGAAGAGCAATCATGCCTGGTGATGTATTCGGGC
1 C-TAAGTCCCGAAGAGCATTCATG-CTAATGATGTATCCGGGC
64858372 CTTCGTGCCT
Statistics
Matches: 136, Mismatches: 15, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
115 8 0.06
116 34 0.25
117 59 0.43
118 35 0.26
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (116 bp):
CTAAGTCCCGAAGAGCATTCATGCTAATGATGTATCCGGGCTTAAGTCCGAGAGCATTCATGTAG
TATATATCCGGGCTAAGACCCGAAGAGCATTGTGCTACTGATATATCCGGA
Found at i:64862026 original size:46 final size:47
Alignment explanation
Indices: 64861742--64862233 Score: 775
Period size: 47 Copynumber: 10.6 Consensus size: 47
64861732 GATAATTGTG
* *
64861742 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
64861789 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64861836 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64861883 ATGTGAAAGTGTAATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGT-ATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64861931 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64861980 ATGTGAAAGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64862026 ATGTGAAAGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
64862072 ATGTGAAAGTGTAATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGT-ATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
64862120 ATGTGAAAG-GTATATATGTGAT-GGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
64862165 ATGTGAAAGTGTATATA-GTGACAGGGCCGAGTGGCCAACGTGATG-
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
64862210 ATGTGAAA--GTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
64862234 TCCCGAAGGG
Statistics
Matches: 420, Mismatches: 17, Indels: 19
0.92 0.04 0.04
Matches are distributed among these distances:
43 6 0.01
44 6 0.01
45 42 0.10
46 115 0.27
47 129 0.31
48 75 0.18
49 46 0.11
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:64864485 original size:40 final size:40
Alignment explanation
Indices: 64864405--64864684 Score: 352
Period size: 40 Copynumber: 7.0 Consensus size: 40
64864395 AGGTCTCGAC
*
64864405 GATG-ATCCAGGCTAAGTCCCGAAGAAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAG-AGCATTCATGCTAGT
64864445 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * *
64864485 GATATATCCGGGCTAAGTCCCGAAGGGCATTCGTGCTACT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
64864525 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTA-T
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
64864564 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
64864604 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * *
64864644 G-TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
64864683 GA
1 GA
64864685 CGTGTATCGG
Statistics
Matches: 211, Mismatches: 24, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
39 68 0.32
40 124 0.59
41 19 0.09
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:64864613 original size:79 final size:78
Alignment explanation
Indices: 64864409--64864671 Score: 341
Period size: 79 Copynumber: 3.3 Consensus size: 78
64864399 CTCGACGATG
* *
64864409 ATCCAGGCTAAGTCCCGAAGAAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
1 ATCCGGGCTAAGTCCCGAAG-AGCATTCGTGCTAGTGATGTATCC-GGCTAAGTCCCGAAGAGCA
64864474 TTCATGCTAGTGATAT
64 TTCATGCTA-TGATAT
* *
64864490 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCTACTGATGTATCCGGACTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG-CTAAGTCCCGAAGAGCAT
*
64864555 TCATGCTATGATGT
65 TCATGCTATGATAT
* * * *
64864569 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATATCCGTGCTAA-ACCTCGAAGAGCA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCG-GCTAAGTCC-CGAAGAGCA
* *
64864633 TTCGTGCTGGTG-TAT
64 TTCATGCT-ATGATAT
*
64864648 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTCCCGAAGAGCA
64864672 ATCATGCTGG
Statistics
Matches: 162, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
78 2 0.01
79 91 0.56
80 50 0.31
81 19 0.12
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (78 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGCTAAGTCCCGAAGAGCATT
CATGCTATGATAT
Found at i:64868158 original size:47 final size:47
Alignment explanation
Indices: 64868106--64868610 Score: 688
Period size: 47 Copynumber: 10.6 Consensus size: 47
64868096 GATAATTGTG
64868106 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
64868153 ATGTGAAAGTGTATATATATTTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * *
64868202 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64868249 ATGTGAAAGTGTATATATATGTGATAAGGCCT-ATGGCCGATGTGATGA
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64868297 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * *
64868346 ATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCGATGTGATGA
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
64868393 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGA
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64868442 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
64868491 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * * *
64868538 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
64868585 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAATGTATATATATGTGATAAG
64868611 TCCCGAAGGG
Statistics
Matches: 417, Mismatches: 34, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
47 185 0.44
48 59 0.14
49 173 0.41
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:64868166 original size:49 final size:49
Alignment explanation
Indices: 64868106--64868610 Score: 793
Period size: 49 Copynumber: 10.6 Consensus size: 49
64868096 GATAATTGTG
64868106 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
64868153 ATGTGAAAGTGTATATATATTTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
64868202 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64868249 ATGTGAAAGTGTATATATATGTGATAAGGCCT-ATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64868297 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
64868346 ATGTGAAAGTG--TATATATGTGATAAGGTCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
64868393 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64868442 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
64868491 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
64868538 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64868585 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
64868611 TCCCGAAGGG
Statistics
Matches: 426, Mismatches: 23, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
47 187 0.44
48 50 0.12
49 189 0.44
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:64868208 original size:96 final size:96
Alignment explanation
Indices: 64868106--64868610 Score: 750
Period size: 96 Copynumber: 5.3 Consensus size: 96
64868096 GATAATTGTG
64868106 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
64868171 ATTTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * *
64868202 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
64868267 ATGTGATAAGGCCT-ATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64868297 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
64868360 ATATGTGATAAGGTCGAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
64868393 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
64868458 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
64868491 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
64868554 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
64868585 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAATGTATATATATGTGATAAG
64868611 TCCCGAAGGG
Statistics
Matches: 377, Mismatches: 27, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
94 53 0.14
95 38 0.10
96 198 0.53
97 49 0.13
98 39 0.10
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:64871112 original size:53 final size:54
Alignment explanation
Indices: 64871031--64871439 Score: 287
Period size: 53 Copynumber: 7.8 Consensus size: 54
64871021 TTTCCTTTTT
* * * * *
64871031 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCATTGCCTTATA
* * *
64871084 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCATTGCCTTATA
* * * ** * *
64871138 GTAACTCATCAATTCCATGTCTTCACATGGTCTTACATGATTTTC-TTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATG-GTATCATTGCCTTATA
* * *
64871193 GAACTTATCAATGCCATGCCTAGGCATGGTCTTACAT-G-AT-A-TG-CTTAT-
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCATTGCCTTATA
* * *** * *
64871241 ---CTTACCAAATGTCATGTTCC-AAACATGGTCTTACATGGTATCCTTACCTTAT-
1 GAACTCACC-AATGCCATG--CCTTGGCATGGTCTTACATGGTATCATTGCCTTATA
* * * *
64871293 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATA
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCATTGCCTTATA
* * ** * * *
64871347 GTAACTCATCAATGCC--G---TGTCATATTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCATTGCCTTATA
* * *
64871397 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATC
1 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATC
64871440 CTTATCTTAC
Statistics
Matches: 278, Mismatches: 55, Indels: 45
0.74 0.15 0.12
Matches are distributed among these distances:
45 5 0.02
46 8 0.03
47 14 0.05
48 3 0.01
49 20 0.07
50 27 0.10
51 3 0.01
52 7 0.03
53 71 0.26
54 58 0.21
55 61 0.22
56 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCATTGCCTTATA
Found at i:64871442 original size:54 final size:54
Alignment explanation
Indices: 64871264--64871448 Score: 195
Period size: 54 Copynumber: 3.5 Consensus size: 54
64871254 ATGTTCCAAA
* *
64871264 CATGGTCTTACATGGTATCCTTACCTTAT-GAACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTACCTTATAGAACTCATCAATGCCATGCCTTGG
** * *
64871317 CATGGTCTTACATGGGA-CCTTTTCCTTATAGTAACTCATCAATGCC--G---TGT
1 CATGGTCTTACATGATATCC-TTACCTTATAG-AACTCATCAATGCCATGCCTTGG
** * * *
64871367 CATATTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTACCTTATAGAACTCATCAATGCCATGCCTTGG
*
64871421 CATGGTCTTACATGATATCCTTATCTTA
1 CATGGTCTTACATGATATCCTTACCTTA
64871449 CCGAATGCTA
Statistics
Matches: 106, Mismatches: 17, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
49 13 0.12
50 24 0.23
51 3 0.03
52 2 0.02
53 25 0.24
54 26 0.25
55 13 0.12
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (54 bp):
CATGGTCTTACATGATATCCTTACCTTATAGAACTCATCAATGCCATGCCTTGG
Found at i:64871473 original size:47 final size:47
Alignment explanation
Indices: 64871421--64871542 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
64871411 CATGCCTTGG
* * * * *
64871421 CATGGTCTTACATGATATCCTTATCTTACCGAATGCTATGTTTCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
64871468 CATGGTCTTACATGGTATCTTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
64871515 CATGGTCATACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
64871543 GTGCCAATGC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:64871478 original size:204 final size:207
Alignment explanation
Indices: 64871054--64871486 Score: 703
Period size: 204 Copynumber: 2.1 Consensus size: 207
64871044 CCATGTCTTG
* *
64871054 ACATGGTCTTACGTGGTATCATTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
1 ACATGGTCTTACATGGTATCATTACCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
* * *
64871119 ATGGGACCTTTGCCTTATAGTAACTCATCAATTCCATGTCTTCACATGGTCTTACATGATTTTCT
66 ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCA-GTCGTCACAT-GTCTTACATGATTTCCT
*
64871184 TGCCTTATAGAACTTATCAATGCCATGCCTAGGCATGGTCTTACATGATATGCTTATCTTACCAA
129 TGCCTTATAGAACTTATCAATGCCATGCCTAGGCATGGTCTTACATGATATCCTTATCTTACCAA
64871249 ATGTCATGTTCCAA
194 ATGTCATGTTCCAA
*
64871263 ACATGGTCTTACATGGTATCCTTACCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
1 ACATGGTCTTACATGGTATCATTACCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
* *
64871328 ATGGGACCTTTTCCTTATAGTAACTCATCAATGCC-GT-GTCATAT-TCTTACATGATTTCCTTG
66 ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCAGTCGTCACATGTCTTACATGATTTCCTTG
* *
64871390 CCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCGAAT
131 CCTTATAGAACTTATCAATGCCATGCCTAGGCATGGTCTTACATGATATCCTTATCTTACCAAAT
*
64871455 G-CTATGTTTCAA
196 GTC-ATGTTCCAA
64871467 ACATGGTCTTACATGGTATC
1 ACATGGTCTTACATGGTATC
64871487 TTTGTCTTAC
Statistics
Matches: 211, Mismatches: 12, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
203 1 0.00
204 108 0.51
206 5 0.02
207 2 0.01
209 95 0.45
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (207 bp):
ACATGGTCTTACATGGTATCATTACCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCAGTCGTCACATGTCTTACATGATTTCCTTG
CCTTATAGAACTTATCAATGCCATGCCTAGGCATGGTCTTACATGATATCCTTATCTTACCAAAT
GTCATGTTCCAA
Found at i:64872360 original size:30 final size:31
Alignment explanation
Indices: 64872317--64872374 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
64872307 CTAACTGAAA
64872317 CTTTGACAAAATTACAATTTTGCCCCTAAAC
1 CTTTGACAAAATTACAATTTTGCCCCTAAAC
* *
64872348 CTTTG-CAGAATTACGATTTTGCCCCTA
1 CTTTGACAAAATTACAATTTTGCCCCTA
64872375 GGCTCAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.34
Consensus pattern (31 bp):
CTTTGACAAAATTACAATTTTGCCCCTAAAC
Found at i:64873991 original size:42 final size:42
Alignment explanation
Indices: 64873905--64874101 Score: 153
Period size: 42 Copynumber: 4.5 Consensus size: 42
64873895 ATATGCCAAC
* * * ** * **
64873905 GCCATGTCCCAGATGTGGTCTTACATGGGATCTCACATTGAT
1 GCCATATCCCAGATATGGTCTTACACGAAATCTCATATCAAT
* * *
64873947 GCCATATCCTCA-ATATGGTCTTATACGAATTCTCATTTCAAT
1 GCCATATCC-CAGATATGGTCTTACACGAAATCTCATATCAAT
* * **
64873989 GCCATGTCCCAGACATGGTCTTACATTAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACACGAAATCTCATATCAAT
* * *
64874031 GCCATATCCCAGATATGGTCTTACATGATAACTCATACTGATACCGAT
1 GCCATATCCCAGATATGGTCTTACACGA-AA-TC-T-C--ATATCAAT
*
64874079 GCCATATCCTAGATATGGTCTTA
1 GCCATATCCCAGATATGGTCTTA
64874102 TACGGGATCT
Statistics
Matches: 123, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
41 2 0.02
42 85 0.69
43 4 0.03
44 2 0.02
45 1 0.01
46 1 0.01
48 28 0.23
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTACACGAAATCTCATATCAAT
Found at i:64875435 original size:25 final size:23
Alignment explanation
Indices: 64875379--64875428 Score: 64
Period size: 25 Copynumber: 2.1 Consensus size: 23
64875369 TGCCAAGTTC
*
64875379 TTAGTTAATTAATTAATTTAATT
1 TTAGTTAATTAATCAATTTAATT
*
64875402 TTAGTTTAATTCAATCACTTTAATT
1 TTAG-TTAATT-AATCAATTTAATT
64875427 TT
1 TT
64875429 TTGTTAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 4 0.17
24 6 0.26
25 13 0.57
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (23 bp):
TTAGTTAATTAATCAATTTAATT
Found at i:64878138 original size:15 final size:15
Alignment explanation
Indices: 64878118--64878225 Score: 153
Period size: 15 Copynumber: 7.2 Consensus size: 15
64878108 CACAGGTACG
* *
64878118 CTTCTTCCTCTTATT
1 CTTCTTCTTCTTCTT
*
64878133 CTTCTTCTTCTTCCT
1 CTTCTTCTTCTTCTT
* *
64878148 CTTCTTCCTCTTCCT
1 CTTCTTCTTCTTCTT
* *
64878163 CTTCTTCCTCTTCCT
1 CTTCTTCTTCTTCTT
64878178 CTTCTTCTTCTTCTT
1 CTTCTTCTTCTTCTT
64878193 CTTCTTCTTCTTCTT
1 CTTCTTCTTCTTCTT
64878208 CTTCTTCTTCTTCTT
1 CTTCTTCTTCTTCTT
64878223 CTT
1 CTT
64878226 GCTGCTGAGT
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 87 1.00
ACGTcount: A:0.01, C:0.38, G:0.00, T:0.61
Consensus pattern (15 bp):
CTTCTTCTTCTTCTT
Found at i:64878142 original size:6 final size:6
Alignment explanation
Indices: 64878118--64878225 Score: 153
Period size: 6 Copynumber: 18.0 Consensus size: 6
64878108 CACAGGTACG
* * * * *
64878118 CTTCTT CCTCTT ATTCTT CTTCTT CTTCCT CTTCTT CCTCTT CCTCTT
1 CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT
* *
64878166 CTTCCT CTTCCT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT
1 CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT
64878214 CTTCTT CTTCTT
1 CTTCTT CTTCTT
64878226 GCTGCTGAGT
Statistics
Matches: 92, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 92 1.00
ACGTcount: A:0.01, C:0.38, G:0.00, T:0.61
Consensus pattern (6 bp):
CTTCTT
Found at i:64878143 original size:9 final size:9
Alignment explanation
Indices: 64878118--64878225 Score: 153
Period size: 9 Copynumber: 12.0 Consensus size: 9
64878108 CACAGGTACG
*
64878118 CTTCTTCCT
1 CTTCTTCTT
*
64878127 CTTATTCTT
1 CTTCTTCTT
64878136 CTTCTTCTT
1 CTTCTTCTT
*
64878145 CCTCTTCTT
1 CTTCTTCTT
* *
64878154 CCTCTTCCT
1 CTTCTTCTT
*
64878163 CTTCTTCCT
1 CTTCTTCTT
*
64878172 CTTCCTCTT
1 CTTCTTCTT
64878181 CTTCTTCTT
1 CTTCTTCTT
64878190 CTTCTTCTT
1 CTTCTTCTT
64878199 CTTCTTCTT
1 CTTCTTCTT
64878208 CTTCTTCTT
1 CTTCTTCTT
64878217 CTTCTTCTT
1 CTTCTTCTT
64878226 GCTGCTGAGT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 90 1.00
ACGTcount: A:0.01, C:0.38, G:0.00, T:0.61
Consensus pattern (9 bp):
CTTCTTCTT
Found at i:64880116 original size:29 final size:29
Alignment explanation
Indices: 64880074--64880133 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
64880064 ACACATGTAC
64880074 TAGATTATATATATATAAATAATCGAAGA
1 TAGATTATATATATATAAATAATCGAAGA
64880103 TAGATTATATATATATAAATAATCGAAGA
1 TAGATTATATATATATAAATAATCGAAGA
64880132 TA
1 TA
64880134 ACATTGAGGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.52, C:0.03, G:0.10, T:0.35
Consensus pattern (29 bp):
TAGATTATATATATATAAATAATCGAAGA
Found at i:64882053 original size:42 final size:42
Alignment explanation
Indices: 64881975--64882142 Score: 151
Period size: 42 Copynumber: 4.0 Consensus size: 42
64881965 TCGGCATCAG
* * * *
64881975 TATGAG-TTATCATGTAAGACCATATCCGAGATATGGCGTTGA
1 TATGAGATT-TCATGTAAGACCATATCTGGGACATGGCATTGA
* ** *
64882017 TACGAGATTTCATGTAAGACCACGTCTGGGACATGGCGTTGA
1 TATGAGATTTCATGTAAGACCATATCTGGGACATGGCATTGA
* * * * *
64882059 AATGAGAATTT-GTATAAGACCATATCTGGGATATGGCATCGA
1 TATGAG-ATTTCATGTAAGACCATATCTGGGACATGGCATTGA
* ** *
64882101 TGTGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGA
1 TATGAGATTTCATGTAAGACCATATCTGGGACATGGCATTGA
64882143 CATCTTATTG
Statistics
Matches: 99, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
41 2 0.02
42 91 0.92
43 6 0.06
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (42 bp):
TATGAGATTTCATGTAAGACCATATCTGGGACATGGCATTGA
Found at i:64882157 original size:84 final size:84
Alignment explanation
Indices: 64881989--64882142 Score: 218
Period size: 84 Copynumber: 1.8 Consensus size: 84
64881979 AGTTATCATG
* * **
64881989 TAAGACCATATCCGAGATATGGCGTTGATACGAGATTTCATGTAAGACCACGTCTGGGACATGGC
1 TAAGACCATATCCGAGATATGGCATCGATACGAGATCCCATGTAAGACCACGTCTGGGACATGGC
*
64882054 GTTGAAATGAGAATTTGTA
66 ATTGAAATGAGAATTTGTA
* * ** *
64882073 TAAGACCATATCTGGGATATGGCATCGATGTGAGATCCCATGTAAGACCATGTCTGGGACATGGC
1 TAAGACCATATCCGAGATATGGCATCGATACGAGATCCCATGTAAGACCACGTCTGGGACATGGC
64882138 ATTGA
66 ATTGA
64882143 CATCTTATTG
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
84 60 1.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.27
Consensus pattern (84 bp):
TAAGACCATATCCGAGATATGGCATCGATACGAGATCCCATGTAAGACCACGTCTGGGACATGGC
ATTGAAATGAGAATTTGTA
Found at i:64885935 original size:55 final size:54
Alignment explanation
Indices: 64885823--64886535 Score: 410
Period size: 54 Copynumber: 13.6 Consensus size: 54
64885813 CTTACCATTC
* * * * ** *
64885823 CCATGTCTTGACATGGACTTACGTG-GTATCCTTGTCTTAT-GAACTCCCCAATA
1 CCATGCCTTGACATGGTCTTACATGAG-ATCCTTGCCTTATAGAACTCATCAATG
* * * * *
64885876 CCATGCCTTGGCATGATCTTACATGGGAACTTTGCCTTATAGTAACTCATCAATG
1 CCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTATAG-AACTCATCAATG
* ** * * *
64885931 CCATG-TTTCGACATGGTCTTACATGATTTCCTTGCCTTATAGAGCTTATCAATT
1 CCATGCCTT-GACATGGTCTTACATGAGATCCTTGCCTTATAGAACTCATCAATG
* * ** *
64885985 CCATGCCTTGGCATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AATT
1 CCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTATAGAACTCATCAATG
** * * * *
64886031 CCATGTTCC-AAACATGGTCTTATATTG-TATCCTTGTCTTAT-GAACTCACCAATG
1 CCATG--CCTTGACATGGTCTTACA-TGAGATCCTTGCCTTATAGAACTCATCAATG
* * * *
64886085 CCATCCCTTGGCATGGTCTTACATG-GGTCCTTTGCCTTATAGTAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGAGATCC-TTGCCTTATAG-AACTCATCAATG
* ** ** *
64886140 CCATGTCTT-ATCATGGTCTTACATGATTTCCTTGCCTTATAGAACTTGTCAACG
1 CCATGCCTTGA-CATGGTCTTACATGAGATCCTTGCCTTATAGAACTCATCAATG
* * **
64886194 CCATGCCTTGGCATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AATG
1 CCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTATAGAACTCATCAATG
** * * *
64886240 CCATGTTCC-AAACATAGTCTTACATG-GTATCCTTGTCTTAT-GAACTCACCAATG
1 CCATG--CCTTGACATGGTCTTACATGAG-ATCCTTGCCTTATAGAACTCATCAATG
* *
64886294 CCATGTCTTGACATGGTCTTACATGAGA-CCTTTGCCTTATAGTAACTCATCAATA
1 CCATGCCTTGACATGGTCTTACATGAGATCC-TTGCCTTATAG-AACTCATCAATG
* ** *
64886349 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTATAGAACTCATCAATG
* * **
64886403 CCATGCCTTGGCATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AATG
1 CCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTATAGAACTCATCAATG
** *
64886449 CCATGTTCC-AAACATGGTCTTACATG-GTATCCTTGTCTTAT-GAACTCA-CTAATG
1 CCATG--CCTTGACATGGTCTTACATGAG-ATCCTTGCCTTATAGAACTCATC-AATG
*
64886503 CCATGTCTTGACATGGTCTTACATG-GTATCCTT
1 CCATGCCTTGACATGGTCTTACATGAG-ATCCTT
64886536 AATCGTCAAT
Statistics
Matches: 520, Mismatches: 91, Indels: 98
0.73 0.13 0.14
Matches are distributed among these distances:
46 26 0.05
47 63 0.12
48 13 0.03
49 8 0.02
51 6 0.01
52 20 0.04
53 98 0.19
54 150 0.29
55 131 0.25
56 5 0.01
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (54 bp):
CCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTATAGAACTCATCAATG
Found at i:64886104 original size:100 final size:100
Alignment explanation
Indices: 64885833--64886536 Score: 603
Period size: 100 Copynumber: 6.8 Consensus size: 100
64885823 CCATGTCTTG
* * * * *
64885833 ACATGGACTTACGTGGTATCCTTGTCTTATGAACTCCCCAATACCATGCCTTGGCATGATCTTAC
1 ACATGGTCTTACAT-GTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
* * * * *
64885898 ATGGGAACTTTGCCTTATAGTAACTCATCAATGCCATGTTTC-G
65 AT--G-A-TAT-CCTTATACTTAC-CA--AATGCCATGTTCCAA
* * * * * *
64885941 ACATGGTCTTACATGATTTCCTTGCCTTATAGAGCTTATCAATTCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATG-TATCCTTGTCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGTCTTA
*
64886006 CATGATATCCTTAT-CTTACCAAATTCCATGTTCCAA
64 CATGATATCCTTATACTTACCAAATGCCATGTTCCAA
* *
64886042 ACATGGTCTTATATTGTATCCTTGTCTTATGAACTCACCAATGCCATCCCTTGGCATGGTCTTAC
1 ACATGGTCTTACA-TGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
* * * **
64886107 ATGGGTCCTTTGCCTTATAGTAACTTATC-AATGCCATG-TCTTA
65 AT--G--ATAT-CC-T-TA-T-ACTTACCAAATGCCATGTTCCAA
* * * *** *
64886150 TCATGGTCTTACATGATTTCCTTGCCTTATAGAACTTGTCAACGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATG-TATCCTTGTCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGTCTTA
64886215 CATGATATCCTTAT-CTTACCAAATGCCATGTTCCAA
64 CATGATATCCTTATACTTACCAAATGCCATGTTCCAA
* * *
64886251 ACATAGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGTCTTGACATGGTCTTAC
1 ACATGGTCTTACAT-GTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
* * * * ***
64886316 ATGAGACCTTTGCCTTATAGTAACTCATCAATACCATG-TCTTG
65 AT--GA--TAT-CCTTATACTTAC-CA--AATGCCATGTTCCAA
* * * *
64886359 ACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATG-TATCCTTGTCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGTCTTA
64886424 CATGATATCCTTAT-CTTACCAAATGCCATGTTCCAA
64 CATGATATCCTTATACTTACCAAATGCCATGTTCCAA
* * *
64886460 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACTAATGCCATGTCTTGACATGGTCTTAC
1 ACATGGTCTTACAT-GTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
*
64886525 ATGGTATCCTTA
65 ATGATATCCTTA
64886537 ATCGTCAATT
Statistics
Matches: 481, Mismatches: 83, Indels: 72
0.76 0.13 0.11
Matches are distributed among these distances:
99 5 0.01
100 132 0.27
101 80 0.17
102 13 0.03
103 7 0.01
104 18 0.04
105 14 0.03
106 5 0.01
107 12 0.02
108 78 0.16
109 112 0.23
110 5 0.01
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.36
Consensus pattern (100 bp):
ACATGGTCTTACATGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACA
TGATATCCTTATACTTACCAAATGCCATGTTCCAA
Found at i:64886208 original size:209 final size:209
Alignment explanation
Indices: 64885833--64886528 Score: 1144
Period size: 209 Copynumber: 3.3 Consensus size: 209
64885823 CCATGTCTTG
* * * * * *
64885833 ACATGGACTTACGTGGTATCCTTGTCTTATGAACTCCCCAATACCATGCCTTGGCATGATCTTAC
1 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
*
64885898 ATGGGAACTTTGCCTTATAGTAACTCATCAATGCCATGT-TTCGACATGGTCTTACATGATTTCC
66 ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTT-GACATGGTCTTACATGATTTCC
* *
64885962 TTGCCTTATAGAGCTTATCAATTCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCA
130 TTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCA
*
64886027 AATTCCATGTTCCAA
195 AATGCCATGTTCCAA
* * * *
64886042 ACATGGTCTTATATTGTATCCTTGTCTTATGAACTCACCAATGCCATCCCTTGGCATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
* *
64886107 ATGGGTCCTTTGCCTTATAGTAACTTATCAATGCCATGTCTT-ATCATGGTCTTACATGATTTCC
66 ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGA-CATGGTCTTACATGATTTCC
* *
64886171 TTGCCTTATAGAACTTGTCAACGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCA
130 TTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCA
64886236 AATGCCATGTTCCAA
195 AATGCCATGTTCCAA
* *
64886251 ACATAGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGTCTTGACATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
* *
64886316 ATGAGACCTTTGCCTTATAGTAACTCATCAATACCATGTCTTGACATGGTCTTACATGATTTCCT
66 ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCT
64886381 TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAA
131 TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAA
64886446 ATGCCATGTTCCAA
196 ATGCCATGTTCCAA
* *
64886460 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACTAATGCCATGTCTTGACATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
64886525 ATGG
66 ATGG
64886529 TATCCTTAAT
Statistics
Matches: 453, Mismatches: 31, Indels: 6
0.92 0.06 0.01
Matches are distributed among these distances:
208 1 0.00
209 449 0.99
210 3 0.01
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.36
Consensus pattern (209 bp):
ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTAC
ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCT
TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAA
ATGCCATGTTCCAA
Found at i:64886236 original size:154 final size:154
Alignment explanation
Indices: 64886100--64886381 Score: 356
Period size: 154 Copynumber: 1.8 Consensus size: 154
64886090 CCTTGGCATG
* * *
64886100 GTCTTACATGG-GTCCTTTGCCTTATAGTAACTTATCAATGCCATGTCTT-ATCATGGTCTTACA
1 GTCTTACATGGTATCC-TTGCCTTAT-G-AACTCACCAATGCCATGTCTTGA-CATGGTCTTACA
** ** * *
64886163 TGATTTCC-TTGCCTTATAG-AACTTGTCAACGCCATGCCTTGGCATGGTCTTACATGATATCCT
62 TGA-GACCTTTGCCTTATAGTAACTCATCAACACCATGCCTTGACATGGTCTTACATGATATCCT
*
64886226 TATCTTACCAAATGCCATGTTCCAAACATA
126 TATCTTACCAAATGCCA-GTCCCAAACATA
*
64886256 GTCTTACATGGTATCCTTGTCTTATGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGAG
1 GTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGAG
* * *
64886321 ACCTTTGCCTTATAGTAACTCATCAATACCATGTCTTGACATGGTCTTACATGATTTCCTT
66 ACCTTTGCCTTATAGTAACTCATCAACACCATGCCTTGACATGGTCTTACATGATATCCTT
64886382 GCCTTATAGA
Statistics
Matches: 109, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
153 2 0.02
154 45 0.41
155 40 0.37
156 19 0.17
157 3 0.03
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (154 bp):
GTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGAG
ACCTTTGCCTTATAGTAACTCATCAACACCATGCCTTGACATGGTCTTACATGATATCCTTATCT
TACCAAATGCCAGTCCCAAACATA
Found at i:64888918 original size:26 final size:26
Alignment explanation
Indices: 64888889--64888944 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
64888879 TGATAAAAAT
64888889 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
64888915 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
64888941 TGAT
1 TGAT
64888945 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:64890454 original size:26 final size:26
Alignment explanation
Indices: 64890425--64890477 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
64890415 TTTACAGTTT
64890425 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
64890451 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
64890477 T
1 T
64890478 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:64896638 original size:26 final size:26
Alignment explanation
Indices: 64896609--64896664 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
64896599 TGATAAAAAT
64896609 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
64896635 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
64896661 TGAT
1 TGAT
64896665 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:64898172 original size:26 final size:26
Alignment explanation
Indices: 64898143--64898195 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
64898133 TTTACAGTTT
64898143 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
64898169 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
64898195 T
1 T
64898196 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:64900699 original size:27 final size:27
Alignment explanation
Indices: 64900672--64900866 Score: 284
Period size: 27 Copynumber: 7.2 Consensus size: 27
64900662 TGAAATGCCT
* *
64900672 TCGATTTGTAGAATTACCATTTTACCT
1 TCGATTTATAGAATTACCATTTTACCC
*
64900699 TCGATTTATAGAATTACCATTTCACCC
1 TCGATTTATAGAATTACCATTTTACCC
* *
64900726 TCGATTTACAAAATTACCATTTTACCC
1 TCGATTTATAGAATTACCATTTTACCC
64900753 TCGATTTATAGAATTACCATTTTACCC
1 TCGATTTATAGAATTACCATTTTACCC
*
64900780 TCGATTTATAGAATTACCGTTTTACCC
1 TCGATTTATAGAATTACCATTTTACCC
* *
64900807 TCGATTTACAAAATTACCATTTTACCC
1 TCGATTTATAGAATTACCATTTTACCC
* *
64900834 TC-AGTTTACAAAATTACCATTTTACCC
1 TCGA-TTTATAGAATTACCATTTTACCC
64900861 TCGATT
1 TCGATT
64900867 GTGAAATTAC
Statistics
Matches: 154, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
26 1 0.01
27 152 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
TCGATTTATAGAATTACCATTTTACCC
Found at i:64900784 original size:81 final size:81
Alignment explanation
Indices: 64900672--64900866 Score: 320
Period size: 81 Copynumber: 2.4 Consensus size: 81
64900662 TGAAATGCCT
* *
64900672 TCGATTTGTAGAATTACCATTTTACCTTCGATTTATAGAATTACCATTTCACCCTCGATTTACAA
1 TCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCGATTTACAA
64900737 AATTACCATTTTACCC
66 AATTACCATTTTACCC
* *
64900753 TCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAA
1 TCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCGATTTACAA
64900818 AATTACCATTTTACCC
66 AATTACCATTTTACCC
* *
64900834 TC-AGTTTACAAAATTACCATTTTACCCTCGATT
1 TCGA-TTTATAGAATTACCATTTTACCCTCGATT
64900867 GTGAAATTAC
Statistics
Matches: 107, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
80 1 0.01
81 106 0.99
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (81 bp):
TCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCGATTTACAA
AATTACCATTTTACCC
Found at i:64900888 original size:27 final size:26
Alignment explanation
Indices: 64900858--64901000 Score: 105
Period size: 27 Copynumber: 5.3 Consensus size: 26
64900848 TACCATTTTA
*
64900858 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTGAAATTACCGAAATAC
* *
64900885 CCCTG-TAG-GATAAGATTACCAAAATAC
1 CCCTGATTGTG--AA-ATTACCGAAATAC
* *
64900912 CCCTAGTTTGTAAAATTACCGAAATAC
1 CCCT-GATTGTGAAATTACCGAAATAC
*
64900939 CACTGGATTGTGAAATTACCGAAATA-
1 CCCT-GATTGTGAAATTACCGAAATAC
* *
64900965 CCCTCAATT-TGTAAAGTTACCAAAATAC
1 CCCT-GATTGTG-AAA-TTACCGAAATAC
64900993 CCCTGATT
1 CCCTGATT
64901001 TACAAAATTA
Statistics
Matches: 92, Mismatches: 15, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
24 1 0.01
25 4 0.04
26 12 0.13
27 66 0.72
28 7 0.08
29 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.28
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCGAAATAC
Found at i:64900939 original size:54 final size:54
Alignment explanation
Indices: 64900856--64900997 Score: 139
Period size: 54 Copynumber: 2.6 Consensus size: 54
64900846 ATTACCATTT
* * * *
64900856 TACCCTCGA-TTGTGAAATTACTGAAATACCCCTGTA-GGAT-AAGATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCGAAATACCCCTGGATGG-TGAA-ATTACCAAAA
* * * *
64900909 TACCC-CTAGTTTGTAAAATTACCGAAATACCACTGGATTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCGAAATACCCCTGGATGGTGAAATTACCAAAA
* *
64900963 TACCCTCAATTTGTAAAGTTACCAAAATACCCCTG
1 TACCCTCAATTTGTAAAATTACCGAAATACCCCTG
64900998 ATTTACAAAA
Statistics
Matches: 72, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
52 1 0.01
53 5 0.07
54 62 0.86
55 4 0.06
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCGAAATACCCCTGGATGGTGAAATTACCAAAA
Found at i:64901001 original size:27 final size:28
Alignment explanation
Indices: 64900899--64901021 Score: 119
Period size: 27 Copynumber: 4.5 Consensus size: 28
64900889 GTAGGATAAG
*
64900899 ATTACCAAAATACCCCTAG-TTTGTAAA
1 ATTACCAAAATACCCCTCGATTTGTAAA
* * * *
64900926 ATTACCGAAATACCACTGGA-TTGTGAA
1 ATTACCAAAATACCCCTCGATTTGTAAA
* *
64900953 ATTACCGAAATA-CCCTCAATTTGTAAA
1 ATTACCAAAATACCCCTCGATTTGTAAA
* **
64900980 GTTACCAAAATACCCCT-GATTTACAAA
1 ATTACCAAAATACCCCTCGATTTGTAAA
*
64901007 ATTACAAAAATACCC
1 ATTACCAAAATACCC
64901022 TTGACTTTCT
Statistics
Matches: 78, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.05
27 70 0.90
28 4 0.05
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (28 bp):
ATTACCAAAATACCCCTCGATTTGTAAA
Found at i:64901009 original size:54 final size:55
Alignment explanation
Indices: 64900899--64901022 Score: 139
Period size: 54 Copynumber: 2.3 Consensus size: 55
64900889 GTAGGATAAG
* * *
64900899 ATTACCAAAATACCC-CTAGTTTGTAAAATTACCGAAATACCACTGGATTGTGAA
1 ATTACCAAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGGATTGTAAA
* * *
64900953 ATTACCGAAATACCCTC-AATTTGTAAAGTTACCAAAATACCCCT-GATT-TACAAA
1 ATTACCAAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGGATTGT--AAA
*
64901007 ATTACAAAAATACCCT
1 ATTACCAAAATACCCT
64901023 TGACTTTCTA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
52 1 0.02
53 4 0.07
54 53 0.90
55 1 0.02
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (55 bp):
ATTACCAAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGGATTGTAAA
Found at i:64901072 original size:27 final size:27
Alignment explanation
Indices: 64901033--64901084 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
64901023 TGACTTTCTA
64901033 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
64901060 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
64901085 GTAGATTTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:64902066 original size:26 final size:25
Alignment explanation
Indices: 64902013--64902082 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
64902003 AGGAAGTGCT
* * * *
64902013 AAAAGGGCTCTGCCCAAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACAG
64902038 AAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAAGGGCTTTGCCCCAGTTTA-CAG
*
64902064 -AAAGGGTTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
64902083 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 37 0.95
26 2 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACAG
Found at i:64902289 original size:42 final size:42
Alignment explanation
Indices: 64902230--64902321 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
64902220 TAGTCTCCCC
*
64902230 AAATGGGCTTGCATACATTAATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCAATTGACATTACATGTGATATTG
*
64902272 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCAATTGACATTACATGTGATATTG
64902314 AAATGGGC
1 AAATGGGC
64902322 CTAAGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCAATTGACATTACATGTGATATTG
Found at i:64902380 original size:31 final size:31
Alignment explanation
Indices: 64902345--64902465 Score: 145
Period size: 31 Copynumber: 3.7 Consensus size: 31
64902335 CGTTTATAGT
64902345 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGG
* *
64902376 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGG
64902407 AAAGGCTTCGGCCCAGTATTCTGATTATGATTTATGG
1 AAAGGCTTCGGCCCAG-----TGA-TATGATTTATGG
* *
64902444 AAAGGCTTCAGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
64902466 TCAAGACTAA
Statistics
Matches: 78, Mismatches: 6, Indels: 13
0.80 0.06 0.13
Matches are distributed among these distances:
30 4 0.05
31 45 0.58
32 1 0.01
36 3 0.04
37 25 0.32
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGG
Found at i:64907563 original size:46 final size:45
Alignment explanation
Indices: 64907496--64907665 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 45
64907486 CATATGTGCT
64907496 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAC-AGAGCC
* * *
64907542 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACA-AGTC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGC-C-ACAT-TACAGAGCC
* * *
64907590 AATGTAAGACATGTCTGGGACATACATC-G--ACATTGAGACAAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATT---AC-AGAGCC
64907636 AGTGTAAGACATGTCTGGGACATGCATCGG
1 AGTGTAAGACATGTCTGGGACATGCATCGG
64907666 TGTAACACCC
Statistics
Matches: 103, Mismatches: 11, Indels: 19
0.77 0.08 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
44 2 0.02
45 1 0.01
46 56 0.54
47 3 0.03
48 30 0.29
49 4 0.04
50 3 0.03
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACAGAGCC
Found at i:64909110 original size:49 final size:47
Alignment explanation
Indices: 64909038--64909205 Score: 145
Period size: 46 Copynumber: 3.6 Consensus size: 47
64909028 TAAGGTGCTG
*
64909038 ATGCCATGTCCCAGAA-ATGGTCTTACACTGGCTATCATCT-TTGAGGTCA
1 ATGCCATGTCCCA-AACATGGTCTTACACTGGCTA-CATCTCGT-A-GTCA
* *
64909087 ATGCCACGTCCCAAACATGGTCTTACACTGG-TACATCTCGTAGTCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTACATCTCGTAGTCA
* * * * *
64909133 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCCCG-AGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGC-TACATCTCGTA-GTCA
*
64909179 ATG-CATGTCCCAGACAT-GTCTTACACT
1 ATGCCATGTCCCAAACATGGTCTTACACT
64909206 AGCACTCGTC
Statistics
Matches: 106, Mismatches: 8, Indels: 13
0.83 0.06 0.10
Matches are distributed among these distances:
44 12 0.11
45 13 0.12
46 43 0.41
47 6 0.06
48 5 0.05
49 27 0.25
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGCTACATCTCGTAGTCA
Found at i:64909228 original size:46 final size:46
Alignment explanation
Indices: 64909131--64909251 Score: 145
Period size: 46 Copynumber: 2.6 Consensus size: 46
64909121 ATCTCGTAGT
* * *
64909131 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCCCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCCTACGTCCCAAGGC
* * *
64909177 CGATGCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGC-CTACGTCCCAAGGC
*
64909223 TGATGCCATGTCCCAGACATGGTCTTACA
1 CGATG-CATGTCCCAGACAT-GTCTTACA
64909252 TTGTCTCTCA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 42 0.65
47 15 0.23
48 8 0.12
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCCTACGTCCCAAGGC
Found at i:64920463 original size:42 final size:42
Alignment explanation
Indices: 64920399--64920511 Score: 129
Period size: 42 Copynumber: 2.7 Consensus size: 42
64920389 AGTTATCATT
* * * *
64920399 TAAGACCATATCCGGGATATGGCATTGATACGAGATTTCGTG
1 TAAGACCATATCTGGGATATGGCATTGATACGAGAATTAGTA
* * * * *
64920441 TAAGACCACT-TTTGGGACATGGCATCGAAATGAGAATTAGTA
1 TAAGACCA-TATCTGGGATATGGCATTGATACGAGAATTAGTA
64920483 TAAGACCATATCTGGGATATGGCATTGAT
1 TAAGACCATATCTGGGATATGGCATTGAT
64920512 GTAAGATCCC
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
41 1 0.02
42 54 0.96
43 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATTGATACGAGAATTAGTA
Found at i:64924243 original size:47 final size:44
Alignment explanation
Indices: 64924166--64924441 Score: 275
Period size: 46 Copynumber: 5.9 Consensus size: 44
64924156 TATATGTGAG
* *
64924166 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA
1 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-TCGAGACGA
* * * *
64924213 GGGCTAGTGTAAGACATTTCTGGGACATGGCATCGGCATTGAGACGA
1 -AGCTAGTGTAAGACATGTCTGGGACAT-GCATCGAC-TCGAGACGA
* *
64924260 GGGCTAGTGTAAGACATTTCTGGGACATGCATCGACCTCGAGACGTA
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGA-CTCGAGACG-A
* *
64924307 AGCCAGTGTAAGACATTTCTGGGACATGCATCGACCTCGAGACGTA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGA-CTCGAGACG-A
* * *
64924353 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGACT-CGAGACGA
*
64924398 TAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGA
1 -AGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTCGAGA
64924442 TATGAGTCAG
Statistics
Matches: 209, Mismatches: 12, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
45 3 0.01
46 106 0.51
47 80 0.38
48 20 0.10
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (44 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGACTCGAGACGA
Found at i:64924315 original size:46 final size:47
Alignment explanation
Indices: 64924163--64924479 Score: 299
Period size: 47 Copynumber: 6.8 Consensus size: 47
64924153 GGTTATATGT
* * * *
64924163 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACCTCGAGAC
* * * * * *
64924211 GAGGGCTAGTGTAAGACATTTCTGGGACATGGCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACCTCGAGAC
* * *
64924258 GAGGGCTAGTGTAAGACATTTCTGGGACAT-GCATCGACCTCGAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACCTCGAGAC
*
64924304 GTA-AGCCAGTGTAAGACATTTCTGGGACAT-GCATCGACCTCGAGAC
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACCTCGAGAC
* *
64924350 GTA-AGCCAGTGTAAGACATGTCTGGGACAT-GCATCG-GCTACGAGAT
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACCT-CGAGAC
* * *
64924396 GATAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTGAGA-
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACCTCGAGAC
* * * * *
64924442 TATGAGTCAGTGTAAGACCGTGTCTAGGACATAGCATC
1 GA-GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATC
64924480 AGCACCTTAC
Statistics
Matches: 245, Mismatches: 17, Indels: 15
0.88 0.06 0.05
Matches are distributed among these distances:
45 3 0.01
46 109 0.44
47 110 0.45
48 23 0.09
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACCTCGAGAC
Found at i:64927752 original size:25 final size:23
Alignment explanation
Indices: 64927724--64927770 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
64927714 TATATTAGTC
64927724 ATATGATAAATTATTAATATAATA
1 ATAT-ATAAATTATTAATATAATA
* *
64927748 A-ATATAAATTATTATTTTAATA
1 ATATATAAATTATTAATATAATA
64927770 A
1 A
64927771 ATTATTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 18 0.86
23 2 0.10
24 1 0.05
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
ATATATAAATTATTAATATAATA
Found at i:64927757 original size:22 final size:22
Alignment explanation
Indices: 64927729--64927772 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
64927719 TAGTCATATG
64927729 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* *
64927751 ATAAATTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
64927773 TATTTAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:64927832 original size:16 final size:17
Alignment explanation
Indices: 64927796--64927832 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
64927786 AATTTTATTT
64927796 TAATAATAAATCTTAAA
1 TAATAATAAATCTTAAA
*
64927813 -AATAAT-AATTTTAAA
1 TAATAATAAATCTTAAA
64927828 TAATA
1 TAATA
64927833 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATAATAAATCTTAAA
Found at i:64927885 original size:15 final size:15
Alignment explanation
Indices: 64927851--64927921 Score: 65
Period size: 15 Copynumber: 4.6 Consensus size: 15
64927841 ATATTATTGA
64927851 AAATA-TTTAAT-AT
1 AAATATTTTAATAAT
*
64927864 TAATATTTTAATAAT
1 AAATATTTTAATAAT
*
64927879 AAATATTTATTACAATTAT
1 AAATA-TT-TT--AATAAT
*
64927898 AAATATATTAATAAT
1 AAATATTTTAATAAT
64927913 AAATATTTT
1 AAATATTTT
64927922 TTAATTTTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
13 4 0.09
14 6 0.13
15 19 0.41
16 2 0.04
17 4 0.09
18 1 0.02
19 10 0.22
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (15 bp):
AAATATTTTAATAAT
Found at i:64931577 original size:49 final size:49
Alignment explanation
Indices: 64931505--64931603 Score: 171
Period size: 49 Copynumber: 2.0 Consensus size: 49
64931495 AGTACAAAAA
* *
64931505 AGGTTCAAGTTAGTGTGTAAACTTTGACAAATCAATTATCTTTTTTAGT
1 AGGTTCAAGTCAGTGTGTAAACTTTGACAAATCAACTATCTTTTTTAGT
*
64931554 AGGTTCGAGTCAGTGTGTAAACTTTGACAAATCAACTATCTTTTTTAGT
1 AGGTTCAAGTCAGTGTGTAAACTTTGACAAATCAACTATCTTTTTTAGT
64931603 A
1 A
64931604 AAAATACATC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.40
Consensus pattern (49 bp):
AGGTTCAAGTCAGTGTGTAAACTTTGACAAATCAACTATCTTTTTTAGT
Found at i:64947686 original size:16 final size:16
Alignment explanation
Indices: 64947662--64947696 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
64947652 AAGATGTTGT
*
64947662 GTTAGTTGCTTGTATG
1 GTTAATTGCTTGTATG
64947678 GTTAATTGCTTGTATG
1 GTTAATTGCTTGTATG
64947694 GTT
1 GTT
64947697 GACTTGCACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.06, G:0.29, T:0.51
Consensus pattern (16 bp):
GTTAATTGCTTGTATG
Found at i:64950599 original size:22 final size:23
Alignment explanation
Indices: 64950548--64950599 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 23
64950538 TAATTATAAA
*
64950548 ATTATTATTTTTTGAGTATATCT
1 ATTATTATATTTTGAGTATATCT
*
64950571 TTATATTATATTTT-A-TATAGTCT
1 AT-TATTATATTTTGAGTATA-TCT
64950594 ATTATT
1 ATTATT
64950600 TTAAATGCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
22 8 0.33
23 6 0.25
24 10 0.42
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.62
Consensus pattern (23 bp):
ATTATTATATTTTGAGTATATCT
Found at i:64951531 original size:131 final size:132
Alignment explanation
Indices: 64951359--64951633 Score: 322
Period size: 131 Copynumber: 2.1 Consensus size: 132
64951349 TAAGAATTCT
* * * *
64951359 TTAAAACGAAGTCGATATTGGATTCTTGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTAC
1 TTAAAACGAAGGCGATATTGGATTCTTGGCAATTCGCGGAATCGTGCCCTAACGTGCTAGGTTAC
* * * * * * * *
64951424 AATTTCTCATTTGCTCAAAGTGATCGAAGGTCCCTTTAGAATTTCACCCATGTCTTTTAAAAATC
66 AATTTCCCATTTGCTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCTAAAAATC
64951489 CC
131 CC
* *
64951491 TT-AAACGAAGGCGATA-TGCGATAT-TTGGTAATTCGCGGAATCGTGCTCTAACGTGCTAGGTT
1 TTAAAACGAAGGCGATATTG-GAT-TCTTGGCAATTCGCGGAATCGTGCCCTAACGTGCTAGGTT
* * * * * *
64951553 GCAATTTCCCGTTTTCTTAAAATAATCAAATATCCCTTCAAAATTTCACTCATGTCTTCTAAAAA
64 ACAATTTCCCATTTGCTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCTAAAAA
*
64951618 TCCT
129 TCCC
64951622 TTAAAACGAAGG
1 TTAAAACGAAGG
64951634 TAATATTCAG
Statistics
Matches: 119, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
130 2 0.02
131 105 0.88
132 12 0.10
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (132 bp):
TTAAAACGAAGGCGATATTGGATTCTTGGCAATTCGCGGAATCGTGCCCTAACGTGCTAGGTTAC
AATTTCCCATTTGCTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCTAAAAATC
CC
Found at i:64954097 original size:45 final size:44
Alignment explanation
Indices: 64953948--64954116 Score: 178
Period size: 45 Copynumber: 3.7 Consensus size: 44
64953938 AGCATCCAAA
* *
64953948 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G-CCGAG
* * *** * * *
64953994 CTCGTTGAGTTGAGTCCAAGTTTGAGAGATGTAACTAG-GCATCCGAG
1 CTCGTTGAGTTGAGTCCGAG-TTCACTTATG-GA-T-GCGAAGCCGAG
64954041 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GCCGAG
64954086 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64954117 GCGGGTTACA
Statistics
Matches: 99, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 37 0.37
46 25 0.25
47 29 0.29
48 1 0.01
49 2 0.02
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (44 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGCCGAG
Found at i:64957050 original size:15 final size:15
Alignment explanation
Indices: 64957030--64957098 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
64957020 ATATCTTGGG
64957030 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
64957045 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
64957060 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
64957075 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
64957090 TTTCTTTAT
1 TTTCTTTAT
64957099 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:64957099 original size:30 final size:30
Alignment explanation
Indices: 64957021--64957108 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
64957011 CATAGTATCA
* * * *
64957021 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
64957051 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
64957081 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
64957109 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:64959551 original size:46 final size:46
Alignment explanation
Indices: 64959501--64959672 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
64959491 TGAGCATCCA
* *
64959501 AACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
*** * * ** *
64959547 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACGTCCG
* * * *
64959594 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
*
64959640 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64959673 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
46 66 0.66
47 34 0.34
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
Found at i:64959653 original size:93 final size:93
Alignment explanation
Indices: 64959494--64959664 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
64959484 GGATGGTTGA
* *
64959494 GCATCCAAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
64959559 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
64959587 GCATCCGAGCTCGTTGAGTTGAG-TCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GCATCCAAACTCGTTGAGTTGAGTTC-GAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
64959651 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
64959665 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:64972014 original size:132 final size:132
Alignment explanation
Indices: 64971712--64972322 Score: 866
Period size: 131 Copynumber: 4.6 Consensus size: 132
64971702 AATCCTACAA
* ** * * * *
64971712 ATCTCGTTTCCCTAAAGTTGCAGTAAAGCAGATCGAAGACCGTGAATCTAGGCTTCTTGAAATTG
1 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGGCTTCCTGAAGTTG
* *
64971777 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTTCCTAAAGTTGTAGT-GAGTACGCTGAAATTTT
66 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
64971841 AG
131 AG
* * * * * * *
64971843 ATCTTGTTTCCCTGAAGTTACAGTGGAGTAGATCGAAGACGGCGAATTTGGGCTTCCTGAAGTTG
1 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGGCTTCCTGAAGTTG
** *
64971908 CAACGAAGTAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
66 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
64971973 AG
131 AG
*
64971975 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTGGGCTTCCTGAAGTTG
1 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGGCTTCCTGAAGTTG
*
64972040 CAGCGAAGCAGATTTAAGCCACCAACCTAGCT-CCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
66 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
64972104 AG
131 AG
* *
64972106 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAATACGGTGAATCTAGGCTTCCTGAAGTTA
1 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGGCTTCCTGAAGTTG
* * * *
64972171 CAGTGAAGCAGATTTAAGCCACCATCCTAGCTCTCTAAAGTTGTAGTGGAGTAGGTTGAAGATTG
66 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA-ATTT
*
64972236 AAG
130 TAG
* * * * ** * * *
64972239 ATTTTGTCTCCCTGAAGTTGCAGTGGAGCAAATCAAAGACGACGAATCTTGTCCTCCTGAAGTTG
1 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGGCTTCCTGAAGTTG
64972304 CAGTGAAGCAGATTTAAGC
66 CAGTGAAGCAGATTTAAGC
64972323 AAGCCTTAAA
Statistics
Matches: 432, Mismatches: 45, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
131 222 0.51
132 132 0.31
133 78 0.18
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (132 bp):
ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGGCTTCCTGAAGTTG
CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
AG
Done.