Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 199 of 352
Found at i:65679454 original size:46 final size:42
Alignment explanation
Indices: 65679379--65679469 Score: 110
Period size: 46 Copynumber: 2.1 Consensus size: 42
65679369 CCTAAGCTAA
* * *
65679379 TGAACAGTAAGCATTGAGCTGAAATAGTAAGCTCTAATGAGC
1 TGAACAGTAAGCATCGAGCTGAAACAGTAAGCTCTAACGAGC
*
65679421 TGAACAGTAAGCCCATACGAGCTGAGAACAGTAAGCTCTTACGAGC
1 TGAACAGTAAG--CAT-CGAGCTGA-AACAGTAAGCTCTAACGAGC
65679467 TGA
1 TGA
65679470 TATATCGGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 11 0.27
44 3 0.07
45 7 0.17
46 20 0.49
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (42 bp):
TGAACAGTAAGCATCGAGCTGAAACAGTAAGCTCTAACGAGC
Found at i:65690452 original size:40 final size:40
Alignment explanation
Indices: 65690375--65690591 Score: 296
Period size: 40 Copynumber: 5.5 Consensus size: 40
65690365 AAACCAAGTA
* *
65690375 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
65690414 CCTTCGGGACTTAGCCTGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
65690454 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
65690494 CCTTTGGGACTTAGCCCGGATATAGTAACTCGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
65690534 CCTTCGGGGCTTAGCCCGGA-ATTTGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
65690574 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
65690592 ATTATCATCC
Statistics
Matches: 158, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.09
40 143 0.91
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:65698505 original size:40 final size:40
Alignment explanation
Indices: 65698435--65698651 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 40
65698425 AAACCAAGTA
* *
65698435 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
65698474 CCTTCGGGACTTATCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
65698514 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
65698554 CCTTCGGGACTTAGCCCGGATATAGTAACTCGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * * *
65698594 CCTTCGGGGCTTAGCCC-GAAATTTGTCACTAGCAGAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
65698634 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
65698652 ATTATCATCC
Statistics
Matches: 155, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 16 0.10
40 139 0.90
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:65707798 original size:55 final size:54
Alignment explanation
Indices: 65707722--65707976 Score: 242
Period size: 55 Copynumber: 4.8 Consensus size: 54
65707712 ATTAGGGTCT
*
65707722 AAGGATACCATGTAAGACCATGCCAAGGCATGGGAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGGAATTGGTAA-GTTTCTAAGGC
* * * * * *
65707777 AAGGAAATCATGTAAGACCATGTCAAGACAT-GGCATTGATAAGTTACTATACGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGGAATTGGTAAGTTTCTA-A-GGC
* * * *
65707832 AAAGG-TCCCATGTAAGACCATGCCAAGGCAT-GGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGGAATTGGTAAGTTTC-TAAGGC
* *
65707885 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGGAATTGGTAAGTTTCTAAGGC
* * * *
65707934 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGGAATTGGTAAG
65707977 GTACCCGCGT
Statistics
Matches: 169, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
49 40 0.24
52 6 0.04
53 38 0.22
54 18 0.11
55 63 0.37
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGGAATTGGTAAGTTTCTAAGGC
Found at i:65707928 original size:108 final size:110
Alignment explanation
Indices: 65707729--65707929 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
65707719 TCTAAGGATA
*
65707729 CCATGTAAGACCATGCCAAGGCATGGGAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGGAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
65707794 CCATGTCAAGACATGGCATTGATAAGTTACTATACGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATACGGCAAAGGTC
* * *
65707839 CCATGTAAGACCATGCCAAGGCAT-GGCATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGGAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
65707901 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
65707930 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 9 0.11
110 24 0.29
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGGAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATACGGCAAAGGTC
Found at i:65708190 original size:16 final size:16
Alignment explanation
Indices: 65708169--65708199 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65708159 ATAAATTTGA
65708169 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
65708185 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
65708200 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:65711731 original size:42 final size:42
Alignment explanation
Indices: 65711678--65711798 Score: 120
Period size: 43 Copynumber: 2.9 Consensus size: 42
65711668 TTTGAGATTA
* * *
65711678 CGTGTTAGACCATATCTAGGATATGGCATTGATATGAGA-CTT
1 CGTGTAAGACCATATCTGGGATATGGCATTGATATGAGATC-C
* * *
65711720 TGTGTAAGACCATAGT-TGGGCTATTGGCATCGATATGAGATCC
1 CGTGTAAGACCATA-TCTGGGATA-TGGCATTGATATGAGATCC
** *
65711763 CACGTAAGACCATATCTGGGATATGGCATTGGTATG
1 CGTGTAAGACCATATCTGGGATATGGCATTGATATG
65711799 GTGCTATGAG
Statistics
Matches: 63, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
42 29 0.46
43 33 0.52
44 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATTGATATGAGATCC
Found at i:65715587 original size:47 final size:47
Alignment explanation
Indices: 65715529--65715673 Score: 245
Period size: 47 Copynumber: 3.1 Consensus size: 47
65715519 TAAGTTGAAT
*
65715529 TTAATCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
65715576 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
** * *
65715623 TTAAGCTTGTTAAATTTGCCCTTAATATTTTCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
65715670 TTAA
1 TTAA
65715674 AGAAAATTTT
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 93 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (47 bp):
TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
Found at i:65716521 original size:45 final size:45
Alignment explanation
Indices: 65716451--65716622 Score: 254
Period size: 45 Copynumber: 3.8 Consensus size: 45
65716441 TATTGTACAG
*
65716451 TACTATTTGGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGATA
** * *
65716496 TACTATTTAGGCCTTTGAGCTTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGATA
* * *
65716541 TACTATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCAGTGATA
1 TACTATTCGGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGATA
* *
65716586 TACTATTCGGGCCTTCAAGCCTAGTAGGCTATAATGC
1 TACTATTCGGGCCTTTAAGCCTAGCAGGCTATAATGC
65716623 TAGTGAAATG
Statistics
Matches: 115, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 115 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (45 bp):
TACTATTCGGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGATA
Found at i:65718470 original size:27 final size:27
Alignment explanation
Indices: 65718403--65718633 Score: 177
Period size: 27 Copynumber: 8.7 Consensus size: 27
65718393 TTAGTTTACC
* *
65718403 AAATTATTGAAATACCC-CG-GTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
65718428 AAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
*
65718455 AAATTACTGAAATACCTTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
65718482 AAATTA-TCGAAATACTGTTGA-TTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
65718508 AAATTATTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
65718535 AAATTACGGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
65718562 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* *** **
65718589 GAATTACTGTTTTACCCTCGATTTACA
1 AAATTACTGAAATACCCTCGATTTGTA
*
65718616 AAATTATTGAAATACCCT
1 AAATTACTGAAATACCCT
65718634 TGTAGGGTAA
Statistics
Matches: 161, Mismatches: 36, Indels: 16
0.76 0.17 0.08
Matches are distributed among these distances:
24 3 0.02
25 11 0.07
26 26 0.16
27 118 0.73
28 3 0.02
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:65718513 original size:26 final size:27
Alignment explanation
Indices: 65718403--65718659 Score: 127
Period size: 27 Copynumber: 9.6 Consensus size: 27
65718393 TTAGTTTACC
* *
65718403 AAATTATTGAAATACCC-CG-GTTGTA
1 AAATTATCGAAATACCCTCGACTTGTA
* * ** *
65718428 AAATTA-CCAAAGTACCCCCGGTTTATA
1 AAATTATCGAAA-TACCCTCGACTTGTA
* *
65718455 AAATTA-CTGAAATACCTTCGATTTGTA
1 AAATTATC-GAAATACCCTCGACTTGTA
** *
65718482 AAATTATCGAAATACTGTTGA-TTGTA
1 AAATTATCGAAATACCCTCGACTTGTA
** *
65718508 AAATTATTAAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGACTTGTA
65718535 AAATTA-CGGAAATACCCTCGACTTGTA
1 AAATTATC-GAAATACCCTCGACTTGTA
* * * *
65718562 AAATTA-CCAAAGTACCCCCGATTTATA
1 AAATTATCGAAA-TACCCTCGACTTGTA
* *** * **
65718589 GAATTA-CTGTTTTACCCTCGATTTACA
1 AAATTATC-GAAATACCCTCGACTTGTA
* * **
65718616 AAATTATTGAAATACCCTTGTA-GGGTA
1 AAATTATCGAAATACCCTCG-ACTTGTA
65718643 AAATTATCGAAATACCC
1 AAATTATCGAAATACCC
65718660 CTGTAGGATA
Statistics
Matches: 179, Mismatches: 42, Indels: 20
0.74 0.17 0.08
Matches are distributed among these distances:
24 3 0.02
25 11 0.06
26 26 0.15
27 134 0.75
28 5 0.03
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.32
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGACTTGTA
Found at i:65718521 original size:53 final size:54
Alignment explanation
Indices: 65718453--65718595 Score: 164
Period size: 53 Copynumber: 2.7 Consensus size: 54
65718443 CCCCGGTTTA
* * ** *
65718453 TAAAATTACTGAAATACCTTCGATTTGTAAAATTATC-GAAATACTGTTGA-TTG
1 TAAAATTACTAAAATACCCTCGATTTGTAAAATTA-CGGAAATACCCTCGACTTG
*
65718506 TAAAATTATTAAAATACCCTCGATTTGTAAAATTACGGAAATACCCTCGACTTG
1 TAAAATTACTAAAATACCCTCGATTTGTAAAATTACGGAAATACCCTCGACTTG
* * * * *
65718560 TAAAATTACCAAAGTACCCCCGATTTATAGAATTAC
1 TAAAATTACTAAAATACCCTCGATTTGTAAAATTAC
65718596 TGTTTTACCC
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
52 1 0.01
53 42 0.55
54 33 0.43
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (54 bp):
TAAAATTACTAAAATACCCTCGATTTGTAAAATTACGGAAATACCCTCGACTTG
Found at i:65718645 original size:27 final size:27
Alignment explanation
Indices: 65718615--65719015 Score: 379
Period size: 27 Copynumber: 14.9 Consensus size: 27
65718605 CTCGATTTAC
**
65718615 AAAATTATTGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
65718642 AAAATTATCGAAATACCCCTGTAGGAT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
65718669 AGAATTATCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
*
65718696 AGAAA-TACCGAAATACCCCTGTAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
** * *
65718723 AAAATTATTGAAATACCCCTGTAGGAT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
65718750 AGAATTA-CAAAATACCCTTGTAGGAT
1 AAAATTACCGAAATACCCTTGTAGGGT
65718776 AGAAA-TACCGAAATACCCTTGTAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
*
65718803 AGAAA-TACTGAAATACCCTTGTAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
* *
65718830 AGAATTA-CGAAAATACCCCTGTAGGGT
1 AAAATTACCG-AAATACCCTTGTAGGGT
* *
65718857 AGAATTACCGAAATACCATTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
*
65718884 AGAAA-TACCGAAATACCCTTATAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
* *
65718911 AGAAA-TA-TGAAAATACCCCTGTAGGGT
1 A-AAATTACCG-AAATACCCTTGTAGGGT
* ** * * *
65718938 AGAATTACTAAAATACCCCTATAGGAT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
65718965 AGAGTTATCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
65718992 AGAAA-TACCGAAATACCCTTGTAG
1 A-AAATTACCGAAATACCCTTGTAG
65719016 AAATACCCTT
Statistics
Matches: 317, Mismatches: 45, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
26 28 0.09
27 281 0.89
28 8 0.03
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.25
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGTAGGGT
Found at i:65719020 original size:14 final size:14
Alignment explanation
Indices: 65719001--65719029 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
65718991 TAGAAATACC
65719001 GAAATACCCTTGTA
1 GAAATACCCTTGTA
65719015 GAAATACCCTTGTA
1 GAAATACCCTTGTA
65719029 G
1 G
65719030 GGTAGGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (14 bp):
GAAATACCCTTGTA
Found at i:65719031 original size:41 final size:41
Alignment explanation
Indices: 65718974--65719054 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
65718964 TAGAGTTATC
65718974 GAAATACCCTTGTAGGGTAGAAATACCGAA-ATACCCTTGTA
1 GAAATACCCTTGTAGGGTAGAAATACC-AAGATACCCTTGTA
* *
65719015 GAAATACCCTTGTAGGGTAGGATTACCAAGATACCCTTGT
1 GAAATACCCTTGTAGGGTAGAAATACCAAGATACCCTTGT
65719055 GGGGTAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 2 0.05
41 35 0.95
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (41 bp):
GAAATACCCTTGTAGGGTAGAAATACCAAGATACCCTTGTA
Found at i:65719059 original size:27 final size:27
Alignment explanation
Indices: 65719018--65719069 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
65719008 CCTTGTAGAA
**
65719018 ATACCCTTGTAGGGTAGGATTACCAAG
1 ATACCCTTGTAGGGTAAAATTACCAAG
*
65719045 ATACCCTTGTGGGGTAAAATTACCA
1 ATACCCTTGTAGGGTAAAATTACCA
65719070 TTTTGCCTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (27 bp):
ATACCCTTGTAGGGTAAAATTACCAAG
Found at i:65719521 original size:22 final size:22
Alignment explanation
Indices: 65719469--65719533 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
65719459 TTTAAGCCTT
**
65719469 CTGATTATGGCTTTGCACCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
65719491 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
65719513 CTGATTATGG-TTGTGTGCCAA
1 CTGATTATGGCTT-TGTGCCAA
65719534 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 3 0.08
22 32 0.89
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:65719731 original size:27 final size:25
Alignment explanation
Indices: 65719699--65719799 Score: 112
Period size: 27 Copynumber: 3.8 Consensus size: 25
65719689 TAAGTGGCTT
* *
65719699 TGCCACATTATCTGTTTCTGGTAGCTA
1 TGCCACAATATCTG-TTCTGGT-GCTC
65719726 TGCCACAAATATCTGTTCTGGTGGCTC
1 TGCCAC-AATATCTGTTCTGGT-GCTC
*
65719753 TGCCACAATAGCTGTATCTGGTGACTC
1 TGCCACAATATCTGT-TCTGGTG-CTC
*
65719780 TGTCACAATATCTGTTCTGG
1 TGCCACAATATCTGTTCTGG
65719800 CAGCCATGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
26 14 0.22
27 44 0.68
28 7 0.11
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (25 bp):
TGCCACAATATCTGTTCTGGTGCTC
Found at i:65719757 original size:54 final size:53
Alignment explanation
Indices: 65719692--65719799 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 53
65719682 ATTCTGTTAA
* * * *
65719692 GTGGCTTTGCCACATTATCTGTTTCTGGT-AGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATAGCTGTATCTGGTGA-CTATGCCAC-AATATCTGTTCTG
* *
65719746 GTGGCTCTGCCACAATAGCTGTATCTGGTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATAGCTGTATCTGGTGACTATGCCACAATATCTGTTCTG
65719799 G
1 G
65719800 CAGCCATGTT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
53 14 0.30
54 32 0.68
55 1 0.02
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (53 bp):
GTGGCTCTGCCACAATAGCTGTATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:65719956 original size:6 final size:6
Alignment explanation
Indices: 65719917--65720004 Score: 56
Period size: 6 Copynumber: 14.3 Consensus size: 6
65719907 TTGCATTCAC
* * *
65719917 ATTCTG ACTCTG ATTCT- ATTATCTG ATACTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG A-T-TCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
65719967 ATTCTG CTTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
65720005 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
5 3 0.05
6 49 0.79
7 8 0.13
8 2 0.03
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:65719967 original size:25 final size:25
Alignment explanation
Indices: 65719920--65719983 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
65719910 CATTCACATT
* * *
65719920 CTGACTCTGATTCTATTATCTGATA
1 CTGATTCTGATTCTATCACCTGATA
* *
65719945 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTATCACCTGATA
*
65719970 CTGCTTCTGATTCT
1 CTGATTCTGATTCT
65719984 CATTTTGATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.17, C:0.23, G:0.14, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTATCACCTGATA
Found at i:65722035 original size:27 final size:27
Alignment explanation
Indices: 65721954--65722233 Score: 245
Period size: 26 Copynumber: 10.6 Consensus size: 27
65721944 TTAGTTTACC
* * *
65721954 AAATTACTGAAATACCC-CCAGTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * *
65721980 AAATTACCAAAGTACCC-CGATTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
65722006 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * *
65722033 AAATTACCAAAATATCGTCGA-TTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
65722059 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
** * * *
65722086 AAATTA-TCGAATACACT-TAGTTTGCA
1 AAATTACTAAAATACCCTCGA-TTTGTA
65722112 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
*
65722139 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * *
65722166 AAATT-CCAAAGTACCC-CGATTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
* ****
65722191 GAATTAC-CGTTTACCCTCGATTTAG-A
1 AAATTACTAAAATACCCTCGATTT-GTA
*
65722217 AAATTATTAAAATACCC
1 AAATTACTAAAATACCC
65722234 CTGTAGGGTA
Statistics
Matches: 199, Mismatches: 46, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
25 17 0.09
26 97 0.49
27 84 0.42
28 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:65722043 original size:53 final size:53
Alignment explanation
Indices: 65721954--65722233 Score: 241
Period size: 53 Copynumber: 5.3 Consensus size: 53
65721944 TTAGTTTACC
* * * * *
65721954 AAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCGATTTATA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCGATTTGTA
* * **
65722006 AAATTATTGAAATACCCTCGATTTGTAAAATTACCAAAATATCGTCGA-TTGTA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATA-CCCCGATTTGTA
* * * ** *
65722059 AAATTACTAAAATACCCTCGATTTGTAAAATTATC-GAATACACTTAGTTTGCA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCGA-TTTGTA
* *
65722112 AAATTACTAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCC-CGATTTGTA
* * * * ***
65722166 AAATT-CCAAAGTACCC-CGATTTATAGAATTACC-GTTTACCCTCGATTTAG-A
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCC-CGATTT-GTA
*
65722217 AAATTATTAAAATACCC
1 AAATTACTAAAATACCC
65722234 CTGTAGGGTA
Statistics
Matches: 184, Mismatches: 36, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
51 19 0.10
52 43 0.23
53 102 0.55
54 19 0.10
55 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
AAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCGATTTGTA
Found at i:65722248 original size:27 final size:27
Alignment explanation
Indices: 65722226--65722520 Score: 346
Period size: 27 Copynumber: 10.9 Consensus size: 27
65722216 AAAATTATTA
* *
65722226 AAATACCCCTGTAGGGTAGAATTATTA
1 AAATACCCCTGTAGGGTAGAATTACTG
65722253 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
** *
65722280 AAATACCTTTGTAGGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
65722307 AAATACCCTTGTAGGGTAGCAA-TACCT-
1 AAATACCCCTGTAGGGTAG-AATTA-CTG
*
65722334 AAATACCCCTGTAGGGTAGATTTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
65722361 AAATACTCTTGTAGGGTAGAAATAAC-G
1 AAATACCCCTGTAGGGTAG-AATTACTG
* * *
65722388 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
65722415 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTG
*
65722442 AAATACCCCTGTAGGATAGAATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
** * *
65722469 AAATACCATTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
65722496 AAATACCCCTATAGGGTAGAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
65722521 CATGATACCC
Statistics
Matches: 230, Mismatches: 30, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
26 8 0.03
27 214 0.93
28 8 0.03
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:65722320 original size:81 final size:81
Alignment explanation
Indices: 65722226--65722520 Score: 407
Period size: 81 Copynumber: 3.6 Consensus size: 81
65722216 AAAATTATTA
* * ***
65722226 AAATACCCCTGTAGGGTAGAATTATTAAAATACCCCTGTAGGGTAGAATTACTGAAATACCTTTG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCTTTG
65722291 TAGGGTAGAAATACTG
66 TAGGGTAGAAATACTG
* * *
65722307 AAATACCCTTGTAGGGTAGCAATACCTAAATACCCCTGTAGGGTAGATTTACTGAAATA-CTCTT
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCT-TT
65722371 GTAGGGTAGAAATAAC-G
65 GTAGGGTAGAAAT-ACTG
* **
65722388 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCTTTG
* *
65722453 TAGGATAGAATTA-TCG
66 TAGGGTAGAAATACT-G
* *
65722469 AAATACCATTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTAC
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTAC
65722521 CATGATACCC
Statistics
Matches: 192, Mismatches: 17, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
80 3 0.02
81 186 0.97
82 3 0.02
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (81 bp):
AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCTTTG
TAGGGTAGAAATACTG
Found at i:65723027 original size:22 final size:22
Alignment explanation
Indices: 65722975--65723039 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
65722965 TTTAAGCCTT
* *
65722975 CTAATTATGGCTTTGCGCCAAC
1 CTAATTATGGCTCTGTGCCAAC
65722997 CTACA-TATGGCTCTGTGCCAAC
1 CTA-ATTATGGCTCTGTGCCAAC
* *
65723019 CTAATTATGGTTGTGTGCCAA
1 CTAATTATGGCTCTGTGCCAA
65723040 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
CTAATTATGGCTCTGTGCCAAC
Found at i:65723227 original size:27 final size:26
Alignment explanation
Indices: 65723190--65723303 Score: 104
Period size: 27 Copynumber: 4.3 Consensus size: 26
65723180 TGCCACGTAT
* *
65723190 TCTGTTC-AGTGGCTTTGCCACATTA
1 TCTGTTCTAGTGGCTATGCCACAATA
65723215 TCTGTTTCTAGTGGCTATGCCACAAATA
1 TCTG-TTCTAGTGGCTATGCCAC-AATA
* *
65723243 TCTGTTCTGGTGGCTCTGCCACAATA
1 TCTGTTCTAGTGGCTATGCCACAATA
* * * * *
65723269 TTTGTATCTGGTGACTCTGTCACAATA
1 TCTGT-TCTAGTGGCTATGCCACAATA
*
65723296 TCTATTCT
1 TCTGTTCT
65723304 GGCAGCCATG
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
25 4 0.05
26 14 0.18
27 51 0.67
28 7 0.09
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.39
Consensus pattern (26 bp):
TCTGTTCTAGTGGCTATGCCACAATA
Found at i:65723256 original size:54 final size:53
Alignment explanation
Indices: 65723190--65723305 Score: 126
Period size: 54 Copynumber: 2.2 Consensus size: 53
65723180 TGCCACGTAT
* * * * *
65723190 TCTGTTC-AGTGGCTTTGCCACATTATCTGTTTCTAGTGGCTATGCCACAAATA
1 TCTGTTCTGGTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCAC-AATA
* * * *
65723243 TCTGTTCTGGTGGCTCTGCCACAATATTTGTATCTGGTGACTCTGTCACAATA
1 TCTGTTCTGGTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAATA
*
65723296 TCTATTCTGG
1 TCTGTTCTGG
65723306 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 20 0.38
54 32 0.62
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (53 bp):
TCTGTTCTGGTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAATA
Found at i:65723432 original size:6 final size:6
Alignment explanation
Indices: 65723423--65723491 Score: 52
Period size: 6 Copynumber: 11.3 Consensus size: 6
65723413 ATGCATTCAC
* * * *
65723423 ATTCTG ATTCTG ATTCTG TTATCTG ATAT-TG ATTCTT ATTCTG ATTTTC
1 ATTCTG ATTCTG ATTCTG AT-TCTG AT-TCTG ATTCTG ATTCTG ATTCTG
*
65723472 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
65723492 AATGTTTCTT
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
5 2 0.04
6 41 0.80
7 8 0.16
ACGTcount: A:0.19, C:0.13, G:0.13, T:0.55
Consensus pattern (6 bp):
ATTCTG
Found at i:65735181 original size:43 final size:43
Alignment explanation
Indices: 65735129--65735230 Score: 150
Period size: 43 Copynumber: 2.4 Consensus size: 43
65735119 CAGCATTACT
* *
65735129 CCTACTAGGCTCGAAGCCCGATATTAACTCACTGGCATTATAG
1 CCTACTAGGCTCGAAGCCCGATATTAAATCACCGGCATTATAG
** *
65735172 CCTACTAGGCTTAAAGCCCGATATTAAATCACCGGTATTATAG
1 CCTACTAGGCTCGAAGCCCGATATTAAATCACCGGCATTATAG
*
65735215 CCTGCTAGGCTCGAAG
1 CCTACTAGGCTCGAAG
65735231 GCCTGAATAG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (43 bp):
CCTACTAGGCTCGAAGCCCGATATTAAATCACCGGCATTATAG
Found at i:65751941 original size:40 final size:40
Alignment explanation
Indices: 65751872--65752048 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
65751862 ACCCAAGTAT
* *
65751872 CTTCGGGAT-TTAG-CCAGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
65751911 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * * *
65751951 CTTCGGGTTTTAGCCCGGATATAATC-ACTAGTATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * ** *
65751991 CTTCGGGACATAGCCCGGTTATAGCAACTCGCATGAATAC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
65752031 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
65752049 TTATCATCCG
Statistics
Matches: 114, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 98 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:65758905 original size:45 final size:46
Alignment explanation
Indices: 65758841--65759010 Score: 199
Period size: 45 Copynumber: 3.7 Consensus size: 46
65758831 TGTAACCCGC
65758841 CCATAAGCGAACTCGGACTCAACTCAACGAG-TCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
65758886 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
65758936 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
65758978 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTT
65759011 TGGATGCTCA
Statistics
Matches: 106, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 2 0.02
45 55 0.52
46 5 0.05
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:65758959 original size:92 final size:92
Alignment explanation
Indices: 65758848--65759017 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 92
65758838 CGCCCATAAG
* *
65758848 CGAACTCGGACTCAACTCAACGAG-TCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65758912 ACGAGTTCGGATGCCTAGTTACATCTCA
65 ACGAGTTCGGATGCCTAGTTACATCTCA
65758940 CGAACTCGGACTCAACTCAACGAGTTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGTTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
65759005 CGAGTTTGGATGC
66 CGAGTTCGGATGC
65759018 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 72 0.97
93 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGTTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:65762749 original size:40 final size:40
Alignment explanation
Indices: 65762529--65762745 Score: 287
Period size: 40 Copynumber: 5.5 Consensus size: 40
65762519 ACCCAAGTAT
65762529 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
*
65762568 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
65762608 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
65762648 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGC
* * * * * *
65762688 CTCCGGGACATAGCCCGGTTATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
65762728 CTTCAGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
65762746 TTATCATCCG
Statistics
Matches: 156, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
38 1 0.01
39 12 0.08
40 142 0.91
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:65764801 original size:49 final size:49
Alignment explanation
Indices: 65764580--65765049 Score: 668
Period size: 49 Copynumber: 9.6 Consensus size: 49
65764570 CCCTTCGGGA
* * * *
65764580 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
65764627 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
65764674 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
65764721 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
65764768 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
65764817 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
65764866 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
65764915 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCA-------TTA-GGC
* *
65764972 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
65765021 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
65765050 TATTCAAATA
Statistics
Matches: 391, Mismatches: 20, Indels: 22
0.90 0.05 0.05
Matches are distributed among these distances:
46 1 0.00
47 135 0.35
49 206 0.53
50 2 0.01
56 3 0.01
57 44 0.11
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:65764974 original size:57 final size:57
Alignment explanation
Indices: 65764913--65765026 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
65764903 CGGCCATTAG
65764913 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC
1 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC
*
65764970 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGCCTTATC
1 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC
65765027 ACATATATAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.26, C:0.29, G:0.09, T:0.36
Consensus pattern (57 bp):
GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC
Found at i:65773810 original size:18 final size:17
Alignment explanation
Indices: 65773787--65773820 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
65773777 TTTCCTTATT
65773787 AACTATACGAGCTTACTA
1 AACTATA-GAGCTTACTA
*
65773805 AACTATATAGCTTACT
1 AACTATAGAGCTTACT
65773821 CTGTTTACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (17 bp):
AACTATAGAGCTTACTA
Found at i:65776260 original size:2 final size:2
Alignment explanation
Indices: 65776253--65776304 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
65776243 ACAAGCAAAT
*
65776253 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AT AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
65776295 AG AG AG AG AG
1 AG AG AG AG AG
65776305 CTTTCAATTC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.48, T:0.02
Consensus pattern (2 bp):
AG
Found at i:65781039 original size:17 final size:17
Alignment explanation
Indices: 65781000--65781053 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
65780990 CCATGTTGTT
*
65781000 TGCCCGTGTGGGCCTACA
1 TGCCCGTGT-GGCCCACA
* *
65781018 CGCCCCTGTGGCCCACA
1 TGCCCGTGTGGCCCACA
65781035 TGCCCGTGTGGCCCACA
1 TGCCCGTGTGGCCCACA
65781052 TG
1 TG
65781054 ACCCAAATCA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
17 24 0.77
18 7 0.23
ACGTcount: A:0.11, C:0.41, G:0.30, T:0.19
Consensus pattern (17 bp):
TGCCCGTGTGGCCCACA
Found at i:65792767 original size:27 final size:27
Alignment explanation
Indices: 65792737--65792870 Score: 171
Period size: 27 Copynumber: 5.0 Consensus size: 27
65792727 TAAATTAATT
65792737 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
65792764 AAATAACTGTTTTGCCTTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
65792791 AAATGACAGTTTTGCCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* * *
65792818 AAATAACTATTTTGCCCTTATAG-AGTA
1 AAATGACTGTTTTGCCCTTAT-GTGGTA
* *
65792845 AGATGATTGTTTTGCCCTTATGTGGT
1 AAATGACTGTTTTGCCCTTATGTGGT
65792871 GTATGCATAT
Statistics
Matches: 89, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 88 0.99
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.41
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATGTGGTA
Found at i:65792796 original size:54 final size:54
Alignment explanation
Indices: 65792737--65792870 Score: 189
Period size: 54 Copynumber: 2.5 Consensus size: 54
65792727 TAAATTAATT
* * *
65792737 AAATGACTGTTTTGCCCTTATGTGGTAAAATAACTGTTTTGCCTTTAT-GTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTAAAATAACTATTTTGCCCTTATAG-AGTA
* *
65792791 AAATGACAGTTTTGCCCTTATATGGTAAAATAACTATTTTGCCCTTATAGAGTA
1 AAATGACTGTTTTGCCCTTATGTGGTAAAATAACTATTTTGCCCTTATAGAGTA
* *
65792845 AGATGATTGTTTTGCCCTTATGTGGT
1 AAATGACTGTTTTGCCCTTATGTGGT
65792871 GTATGCATAT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
54 69 0.99
55 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.41
Consensus pattern (54 bp):
AAATGACTGTTTTGCCCTTATGTGGTAAAATAACTATTTTGCCCTTATAGAGTA
Found at i:65793207 original size:18 final size:18
Alignment explanation
Indices: 65793184--65793248 Score: 94
Period size: 18 Copynumber: 3.6 Consensus size: 18
65793174 AGGACTTGTA
65793184 TATTGTTACTGCACTGAT
1 TATTGTTACTGCACTGAT
*
65793202 TATTGTTGCTGCACTGAT
1 TATTGTTACTGCACTGAT
* * *
65793220 TACTATTTCTGCACTGAT
1 TATTGTTACTGCACTGAT
65793238 TATTGTTACTG
1 TATTGTTACTG
65793249 TAATAGGCCA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.46
Consensus pattern (18 bp):
TATTGTTACTGCACTGAT
Found at i:65802023 original size:55 final size:53
Alignment explanation
Indices: 65801902--65802099 Score: 193
Period size: 55 Copynumber: 3.7 Consensus size: 53
65801892 ATTAGGGTTT
* ** * * *
65801902 AAGGATACCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTC-TAATGC
1 AAGGATACCATGTAAGACCATGTCAAGAAATGG-CATTGATAA-G-TTCATAAGGC
*
65801957 AAGGATACCATGTAAGACCATGTCATGAAATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGAAATGGCATTGATAAGTT-C-ATAAGGC
* * ** * *
65802012 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGAAATGGCATTGATAAGTTCATAAGGC
* *
65802065 AAGGATACCATGTAAGACCATGTCGAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGAAATGGCA
65802100 ACTGTAAGTT
Statistics
Matches: 120, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
52 6 0.05
53 35 0.29
54 8 0.07
55 67 0.56
56 4 0.03
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGAAATGGCATTGATAAGTTCATAAGGC
Found at i:65802108 original size:108 final size:110
Alignment explanation
Indices: 65801909--65802109 Score: 295
Period size: 108 Copynumber: 1.8 Consensus size: 110
65801899 TTTAAGGATA
*
65801909 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTCTAATGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
65801974 CCATGTCATGAAATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCATGAAATGGCACTGATAAGTTACTATAAGGCAAAGGTC
* *
65802019 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
*
65802081 ACCATGTCGA-GACATGGCAACTG-TAAGTT
65 ACCATGTC-ATGAAATGGC-ACTGATAAGTT
65802110 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 5, Indels: 8
0.86 0.05 0.08
Matches are distributed among these distances:
107 3 0.04
108 43 0.52
109 11 0.13
110 26 0.31
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCATGAAATGGCACTGATAAGTTACTATAAGGCAAAGGTC
Found at i:65802369 original size:16 final size:16
Alignment explanation
Indices: 65802348--65802378 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65802338 ATAAATTTGA
65802348 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
65802364 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
65802379 AGTGAAGATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:65805960 original size:27 final size:27
Alignment explanation
Indices: 65805916--65805996 Score: 101
Period size: 27 Copynumber: 2.9 Consensus size: 27
65805906 GTCACCAGAT
65805916 ACAGATATTTTGTGGCAGTGCCACCAAA
1 ACAGATA-TTTGTGGCAGTGCCACCAAA
* * *
65805944 ACAGATATATGTGGCAGGGCCACCAGA
1 ACAGATATTTGTGGCAGTGCCACCAAA
65805971 ACAGATAATTTGTGGCA-TAGCCACCA
1 ACAGAT-ATTTGTGGCAGT-GCCACCA
65805997 GGACACTTCC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.50
28 23 0.50
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGTGCCACCAAA
Found at i:65806150 original size:28 final size:28
Alignment explanation
Indices: 65806103--65806167 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
65806093 AAATTAACCC
*
65806103 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
65806131 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
65806159 TAGGGGTAT
1 TAGGGGTAT
65806168 TCCAGTGCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:65811565 original size:19 final size:19
Alignment explanation
Indices: 65811538--65811574 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
65811528 CTTCAGAAGT
*
65811538 CCAAATTTTTTTTTAAAAA
1 CCAAATTTTTTTTGAAAAA
*
65811557 CCAATTTTTTTTTGAAAA
1 CCAAATTTTTTTTGAAAA
65811575 TCTTCGTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.11, G:0.03, T:0.49
Consensus pattern (19 bp):
CCAAATTTTTTTTGAAAAA
Found at i:65812621 original size:55 final size:56
Alignment explanation
Indices: 65812556--65812670 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
65812546 AGCATGGCTG
* *
65812556 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
65812612 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
65812667 CCAG
1 CCAG
65812671 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:65812633 original size:27 final size:27
Alignment explanation
Indices: 65812581--65812670 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
65812571 GTGACAGAGT
65812581 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
65812610 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
65812637 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
65812665 CACCAG
1 CACCAG
65812671 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:65812823 original size:28 final size:28
Alignment explanation
Indices: 65812776--65812840 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
65812766 AAATTAACCC
*
65812776 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
65812804 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
65812832 TAGGGGTAT
1 TAGGGGTAT
65812841 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:65816768 original size:47 final size:47
Alignment explanation
Indices: 65816690--65817145 Score: 750
Period size: 47 Copynumber: 9.6 Consensus size: 47
65816680 CCCTTCGGGA
* * * * * * *
65816690 CTTATCACATTTATACACTTTTACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65816737 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65816784 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65816831 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65816878 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65816925 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65816974 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65817023 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65817070 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65817117 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
65817146 ACCAACCCTT
Statistics
Matches: 389, Mismatches: 16, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
47 275 0.71
49 114 0.29
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65817038 original size:192 final size:190
Alignment explanation
Indices: 65816690--65817145 Score: 772
Period size: 192 Copynumber: 2.4 Consensus size: 190
65816680 CCCTTCGGGA
* * * * * * * * *
65816690 CTTATCACATTTATACACTTTTACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
65816753 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65816818 TCGGCCATTAGGCCTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
65816878 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
65816943 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* *
65817008 CATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 CATCGGCCATTAGGCCTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
*
65817070 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
65817135 ACTTTCACATT
66 ACTTTCACATT
65817146 ACCAACCCTT
Statistics
Matches: 252, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
188 46 0.18
190 47 0.19
192 159 0.63
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
Found at i:65817474 original size:40 final size:40
Alignment explanation
Indices: 65817369--65817511 Score: 139
Period size: 40 Copynumber: 3.6 Consensus size: 40
65817359 GCTACTCGTT
* * *
65817369 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTA
1 CAAATGCCTTCAGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
65817409 CAAATGCCTTCAAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCAGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
65817449 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCAGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
65817490 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCAGGACTTAGCCC
65817512 AGACATCATT
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
39 2 0.02
40 71 0.83
41 13 0.15
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCAGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:65821926 original size:12 final size:12
Alignment explanation
Indices: 65821909--65821933 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
65821899 TCATATCATT
65821909 TCAATAAACATA
1 TCAATAAACATA
65821921 TCAATAAACATA
1 TCAATAAACATA
65821933 T
1 T
65821934 TGAAACCAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (12 bp):
TCAATAAACATA
Found at i:65823734 original size:27 final size:27
Alignment explanation
Indices: 65823699--65823877 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
65823689 TTAGTTTACC
* * *
65823699 AAATCACCAAAAAACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* * *
65823726 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTATA
65823753 AAATTACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
* *
65823780 AAATTACCATAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
** * * *
65823807 AAATTATGAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTATA
* * *
65823834 AAATTACCGAAATACCCATAGTTTGA-A
1 AAATTACCAAAATACCCCTGGTTT-ATA
**
65823861 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
65823878 TCGACCTGTA
Statistics
Matches: 124, Mismatches: 27, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
27 124 1.00
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTATA
Found at i:65823764 original size:54 final size:54
Alignment explanation
Indices: 65823689--65823934 Score: 228
Period size: 54 Copynumber: 4.6 Consensus size: 54
65823679 TTAGAATACT
* * *
65823689 TTAGTTTACCAAATCACCAAAAAACCCCTGGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* *
65823743 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTATAAAATTACCATAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * ** * * *
65823797 TTGGTTTATAAAATTATGAAAATACCCCTGATTTGTGAAATTACCGAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* ** *** **
65823851 ATAGTTTGA-AAAATTACTGAAATA-CCCTCGACCTGTAAAATTACTGAAATACCC
1 TTAGTTT-ACAAAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCC
** * *
65823905 TT-GATTTGTAAAATTACTAAAATACTCCTG
1 TTAG-TTTACAAAATTACCAAAATACCCCTG
65823935 TAAGATAGAA
Statistics
Matches: 160, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
53 5 0.03
54 151 0.94
55 4 0.03
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
Found at i:65823971 original size:27 final size:27
Alignment explanation
Indices: 65823941--65824110 Score: 241
Period size: 27 Copynumber: 6.3 Consensus size: 27
65823931 CCTGTAAGAT
65823941 AGAATTACCATTTTACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCAATTTAC
* * *
65823968 AGAATTGCCGTTTTACCCTCAATTTAT
1 AGAATTACCATTTTACCCTCAATTTAC
65823995 AGAATTACCATTTTACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCAATTTAC
* * * **
65824022 AAAATTACCGTCTTACCCTTGATTTAC
1 AGAATTACCATTTTACCCTCAATTTAC
*
65824049 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCAATTTAC
*
65824076 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCAATTTAC
*
65824103 AAAATTAC
1 AGAATTAC
65824111 TGAAATACCT
Statistics
Matches: 127, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCAATTTAC
Found at i:65824119 original size:27 final size:27
Alignment explanation
Indices: 65823725--65824198 Score: 185
Period size: 27 Copynumber: 17.6 Consensus size: 27
65823715 CCTGGTTTGT
*
65823725 AAAATTACCAAAATACCCT-TAGTTTAC
1 AAAATTACCAAAATACCCTCGA-TTTAC
* *
65823752 AAAATTACCAAAATACCC-CTGGTTTAT
1 AAAATTACCAAAATACCCTC-GATTTAC
* * * *
65823779 AAAATTACCATAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
** **
65823806 AAAATTATGAAAATACCC-CTGATTTGT
1 AAAATTACCAAAATACCCTC-GATTTAC
* * *
65823833 GAAATTACCGAAATACCCATAG-TTTGA-
1 AAAATTACCAAAATACCC-TCGATTT-AC
** ** **
65823860 AAAATTACTGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCTCGATTTAC
** * **
65823887 AAAATTACTGAAATACCCTTGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* * *
65823914 AAAATTACTAAAATACTCCT-G--TAAG
1 AAAATTACCAAAATAC-CCTCGATTTAC
*** *
65823939 ATAGAATTACCATTTTACCCTCAATTTAC
1 A-A-AATTACCAAAATACCCTCGATTTAC
* * **** * *
65823968 AGAATTGCCGTTTTACCCTCAATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* *** *
65823995 AGAATTACCATTTTACCCTCAATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
**** *
65824022 AAAATTACCGTCTTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ***
65824049 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ***
65824076 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
** * * *
65824103 AAAATTACTGAAATACCTTTGGTTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* *
65824130 AAAATTACCAAAATACCCTC-AATTAA
1 AAAATTACCAAAATACCCTCGATTTAC
* **
65824156 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTACCAAAATACCCTC-GATTTAC
65824183 AAAATTACCAAAATAC
1 AAAATTACCAAAATAC
65824199 AAATTACCAA
Statistics
Matches: 357, Mismatches: 73, Indels: 34
0.77 0.16 0.07
Matches are distributed among these distances:
25 3 0.01
26 27 0.08
27 320 0.90
28 4 0.01
29 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAC
Found at i:65824129 original size:81 final size:81
Alignment explanation
Indices: 65823962--65824153 Score: 249
Period size: 81 Copynumber: 2.4 Consensus size: 81
65823952 TTTACCCTCA
* * *
65823962 ATTTACAGAATTGCCGTTTTACCCTCAATTTATAGAATTACCATTTTACCCTCAATTTACAAAAT
1 ATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCAATTTACAAAAT
***
65824027 TACCGTCTTACCCTTG
66 TACCGAAATACCCTTG
* *
65824043 ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAAT
1 ATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCAATTTACAAAAT
* *
65824108 TACTGAAATACCTTTG
66 TACCGAAATACCCTTG
* * ***
65824124 GTTTACAAAATTACCAAAATACCCTCAATT
1 ATTTACAGAATTACCATTTTACCCTCAATT
65824154 AAAAAATTAC
Statistics
Matches: 95, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 95 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.36
Consensus pattern (81 bp):
ATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCAATTTACAAAAT
TACCGAAATACCCTTG
Found at i:65824187 original size:53 final size:54
Alignment explanation
Indices: 65824071--65824198 Score: 141
Period size: 53 Copynumber: 2.4 Consensus size: 54
65824061 TTACCCTCGA
* *** * * ** **
65824071 TTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCTTTGG
1 TTTACAAAATTACCAAAATACCCTCGAATTAAAAAATTACCAAAATACCCCTGG
65824125 TTTACAAAATTACCAAAATACCCTC-AATTAAAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCCTCGAATTAAAAAATTACCAAAATACCCCTGG
**
65824178 TTTGTAAAATTACCAAAATAC
1 TTTACAAAATTACCAAAATAC
65824199 AAATTACCAA
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
53 41 0.66
54 21 0.34
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.31
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCTCGAATTAAAAAATTACCAAAATACCCCTGG
Found at i:65824204 original size:15 final size:15
Alignment explanation
Indices: 65824184--65824213 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
65824174 CTGGTTTGTA
65824184 AAATTACCAAAATAC
1 AAATTACCAAAATAC
65824199 AAATTACCAAAATAC
1 AAATTACCAAAATAC
65824214 CCTTGTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (15 bp):
AAATTACCAAAATAC
Found at i:65824231 original size:27 final size:27
Alignment explanation
Indices: 65824200--65824450 Score: 290
Period size: 27 Copynumber: 9.3 Consensus size: 27
65824190 CCAAAATACA
*
65824200 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
65824227 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
** *
65824254 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
65824281 AATTA-CAGAAATACCCCTGTAGGGTAG
1 AATTACCA-AAATACCCCTGTAGGGTAG
* *
65824308 AATTACCGGAATACACCCCTGTAGGGTAG
1 AATTACC--AAAATACCCCTGTAGGGTAG
* *
65824337 AATTACCGAAAT-CCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* **
65824363 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
65824390 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
65824417 AATTACTAAAATAACACTGTAGGATGG
1 AATTACCAAAATACCCCTGTAGGGTAG
65824444 AATTACC
1 AATTACC
65824451 GAGATACCTT
Statistics
Matches: 192, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.12
27 143 0.74
28 1 0.01
29 24 0.12
30 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:65824231 original size:42 final size:42
Alignment explanation
Indices: 65824157--65824240 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
65824147 CTCAATTAAA
**
65824157 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATAC
1 AAATTACCAAAATACCCCTGGTGGGTAAAATTACCAAAATAC
* * *
65824199 AAATTACCAAAATA-CCCTTGTAGGGTAGAATTACCGAAATAC
1 AAATTACCAAAATACCCCTGGT-GGGTAAAATTACCAAAATAC
65824241 CCCTATAGGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
41 6 0.17
42 30 0.83
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.25
Consensus pattern (42 bp):
AAATTACCAAAATACCCCTGGTGGGTAAAATTACCAAAATAC
Found at i:65824390 original size:109 final size:110
Alignment explanation
Indices: 65824212--65824422 Score: 356
Period size: 109 Copynumber: 1.9 Consensus size: 110
65824202 TTACCAAAAT
*
65824212 ACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAAG
1 ACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAAG
65824277 GTAGAATTAC-AGAAATACCCCTGTAGGGTAGAATTACCGGAATAC
66 GTAGAATTACTA-AAATACCCCTGTAGGGTAGAATTACCGGAATAC
* *
65824322 ACCCCTGTAGGGTAGAATTACCGAAAT-CCCCTATAGGGTAGAATTA-TCGCAATACCCCTGTAG
1 ACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACT-GAAATACCCCTGTAA
65824385 GGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTAC
65 GGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTAC
65824423 TAAAATAACA
Statistics
Matches: 96, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
108 1 0.01
109 68 0.71
110 27 0.28
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (110 bp):
ACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAAG
GTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGGAATAC
Found at i:65825156 original size:27 final size:27
Alignment explanation
Indices: 65825126--65825224 Score: 119
Period size: 27 Copynumber: 3.7 Consensus size: 27
65825116 ATTCTGTTAA
* *
65825126 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
65825153 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
65825180 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
65825207 GTGACTCTGTCACAATAT
1 GTGGCTATGCCACAATAT
65825225 TTGATAACTG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 49 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:65825402 original size:6 final size:6
Alignment explanation
Indices: 65825364--65825467 Score: 56
Period size: 6 Copynumber: 16.8 Consensus size: 6
65825354 TTGCATTCAC
* * *
65825364 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATAT-TC ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG AT-TCTG ATTCTG
* *
65825414 -TTACCTG A-TCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
65825463 ATTCT
1 ATTCT
65825468 AGTTTTGATA
Statistics
Matches: 75, Mismatches: 10, Indels: 26
0.68 0.09 0.23
Matches are distributed among these distances:
5 10 0.13
6 48 0.64
7 15 0.20
8 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:65825456 original size:25 final size:24
Alignment explanation
Indices: 65825408--65825462 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 24
65825398 TCTGATATTC
* *
65825408 ATTCTGTTACCTGATCTGATTCTG
1 ATTCTGTCACCTAATCTGATTCTG
65825432 ATTCTGTCACCTAATTCTGATTCTG
1 ATTCTGTCACCTAA-TCTGATTCTG
65825457 ATTCTG
1 ATTCTG
65825463 ATTCTAGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
24 12 0.43
25 16 0.57
ACGTcount: A:0.18, C:0.22, G:0.15, T:0.45
Consensus pattern (24 bp):
ATTCTGTCACCTAATCTGATTCTG
Found at i:65826777 original size:25 final size:25
Alignment explanation
Indices: 65826739--65826811 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
65826729 CATATATAGA
* *
65826739 TATGCTTATACGAGCTGTAATTCGG
1 TATGCTCACACGAGCTGTAATTCGG
* *
65826764 TATGCTCACTCGAGCTATAGATT-GG
1 TATGCTCACACGAGCTGTA-ATTCGG
* *
65826789 TATGCTCTCACAAGCTGTAATTC
1 TATGCTCACACGAGCTGTAATTC
65826812 TGTAACAGCC
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
24 3 0.08
25 32 0.84
26 3 0.08
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (25 bp):
TATGCTCACACGAGCTGTAATTCGG
Found at i:65828218 original size:43 final size:41
Alignment explanation
Indices: 65828106--65828219 Score: 113
Period size: 43 Copynumber: 2.7 Consensus size: 41
65828096 CATGATTCAC
* *
65828106 ATGTAAGACCATGCTTGGGACATTGGCATCGTATATGATTTT
1 ATGTAAGACCACG-TTAGGACATTGGCATCGTATATGATTTT
* * * * *
65828148 GTGTAAGACC-CTATCTAGGATAATGGCATCGATATCTGATTTT
1 ATGTAAGACCAC-GT-TAGGACATTGGCATCG-TATATGATTTT
65828191 ATGTAAGACCACGTTAAGGACATTGGCAT
1 ATGTAAGACCACGTT-AGGACATTGGCAT
65828220 TGTACGAGCT
Statistics
Matches: 56, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
41 1 0.02
42 23 0.41
43 31 0.55
44 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (41 bp):
ATGTAAGACCACGTTAGGACATTGGCATCGTATATGATTTT
Found at i:65831940 original size:55 final size:56
Alignment explanation
Indices: 65831875--65831989 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
65831865 AGCATGGCTG
* * *
65831875 CCAGATACAGA-AAATGTAACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTAACAGAGCCACCA-AAACAGATAATTTGTGGCA-TAGCCA
* ** *
65831931 CCAGA-ACAGATATATGTGGCAGGGCCACCAAAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTAACAGAGCCACCAAAACAGATAATTTGTGGCATAGCCA
65831986 CCAG
1 CCAG
65831990 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.60
56 19 0.38
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTAACAGAGCCACCAAAACAGATAATTTGTGGCATAGCCA
Found at i:65831952 original size:27 final size:27
Alignment explanation
Indices: 65831900--65831989 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
65831890 GTAACAGAGT
65831900 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
65831929 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
*
65831956 CACCAAAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
65831984 CACCAG
1 CACCAG
65831990 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:65832167 original size:29 final size:28
Alignment explanation
Indices: 65832095--65832217 Score: 210
Period size: 29 Copynumber: 4.3 Consensus size: 28
65832085 AAATTAACCC
* *
65832095 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
65832123 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
65832151 TAGGGGGTATAATGGTAATTTTGCATACA
1 TA-GGGGTATAATGGTAATTTTGCATACA
65832180 TAGGGGTATAATGGTAATTTTTGCATACA
1 TAGGGGTATAATGGTAA-TTTTGCATACA
65832209 TAGGGGTAT
1 TAGGGGTAT
65832218 TCTAGTACAT
Statistics
Matches: 91, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
28 43 0.47
29 48 0.53
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:65832182 original size:57 final size:58
Alignment explanation
Indices: 65832097--65832214 Score: 211
Period size: 57 Copynumber: 2.1 Consensus size: 58
65832087 ATTAACCCTA
*
65832097 GGGGTATAAAGGTCATTTTGCATACATAGGGGTATAATGGTAA-TTTTGCATACATAG
1 GGGGTATAAAGGTAATTTTGCATACATAGGGGTATAATGGTAATTTTTGCATACATAG
*
65832154 GGGGTATAATGGTAATTTTGCATACATAGGGGTATAATGGTAATTTTTGCATACATAG
1 GGGGTATAAAGGTAATTTTGCATACATAGGGGTATAATGGTAATTTTTGCATACATAG
65832212 GGG
1 GGG
65832215 TATTCTAGTA
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
57 41 0.71
58 17 0.29
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (58 bp):
GGGGTATAAAGGTAATTTTGCATACATAGGGGTATAATGGTAATTTTTGCATACATAG
Found at i:65839323 original size:2 final size:2
Alignment explanation
Indices: 65839316--65839366 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
65839306 GCAAACAAGC
*
65839316 AG AG AG AG AG AG AG -G AG AG AG AG AA AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
65839357 AG AG AG AG AG
1 AG AG AG AG AG
65839367 CTCAATTCAG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:65840449 original size:20 final size:20
Alignment explanation
Indices: 65840424--65840480 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 20
65840414 TTTCTTGATC
65840424 TTTATAATAATTCAATTCAA
1 TTTATAATAATTCAATTCAA
* *
65840444 TTTATAA-ATTTCACATTCAC
1 TTTATAATAATTCA-ATTCAA
65840464 TTTA-AATTCAATTCAAT
1 TTTATAA-T-AATTCAAT
65840481 GTATAAGACC
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
19 7 0.23
20 16 0.53
21 2 0.07
22 5 0.17
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTATAATAATTCAATTCAA
Found at i:65847929 original size:27 final size:27
Alignment explanation
Indices: 65847899--65848060 Score: 189
Period size: 27 Copynumber: 6.0 Consensus size: 27
65847889 CCAAAGTACG
* * *
65847899 CTCGATTTATAGAATTGCCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
65847926 CTCGATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
* * * *
65847953 CTCGATTTACAAAATCACTATTTTATC
1 CTCGATTTACAGAATTACCATTTTACC
* * * * * *
65847980 TTTGATTTATAGAATTATCGTTTTACT
1 CTCGATTTACAGAATTACCATTTTACC
*
65848007 CTCGATTTACAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
*
65848034 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
65848061 GCTAGGATGT
Statistics
Matches: 109, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 109 1.00
ACGTcount: A:0.28, C:0.20, G:0.09, T:0.43
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCATTTTACC
Found at i:65848057 original size:81 final size:81
Alignment explanation
Indices: 65847902--65848058 Score: 242
Period size: 81 Copynumber: 1.9 Consensus size: 81
65847892 AAGTACGCTC
*
65847902 GATTTATAGAATTGCCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAA
1 GATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAA
*
65847967 TCACTATTTTATCTTT
66 TCACCATTTTATCTTT
* * * * *
65847983 GATTTATAGAATTATCGTTTTACTCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAGAA
1 GATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAA
*
65848048 TTACCATTTTA
66 TCACCATTTTA
65848059 CCGCTAGGAT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.43
Consensus pattern (81 bp):
GATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAA
TCACCATTTTATCTTT
Found at i:65848438 original size:73 final size:67
Alignment explanation
Indices: 65848279--65848438 Score: 232
Period size: 67 Copynumber: 2.3 Consensus size: 67
65848269 GAGGAAGCGT
65848279 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCATATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCATATATATCTGTTCTGGTGACTTCGTCACAA
65848344 TA
66 TA
*
65848346 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATATACATCTGTATCTGGTGACTTC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCG-C-C--ATATAT--ATCTGT-TCTGGTGACTTC
65848411 GTCACAATA
59 GTCACAATA
*
65848420 TC-GGTAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
65848439 TTATGTGCTG
Statistics
Matches: 84, Mismatches: 2, Indels: 8
0.89 0.02 0.09
Matches are distributed among these distances:
67 31 0.37
68 1 0.01
69 1 0.01
71 6 0.07
73 22 0.26
74 23 0.27
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCATATATATCTGTTCTGGTGACTTCGTCACAA
TA
Found at i:65848580 original size:6 final size:6
Alignment explanation
Indices: 65848569--65848650 Score: 53
Period size: 6 Copynumber: 13.3 Consensus size: 6
65848559 TTACCTAATA
* *
65848569 CTGATT CTGATT CT-ACTT CTG-TCA CCTGATT CTGATT CTGATT CTG-TCAC
1 CTGATT CTGATT CTGA-TT CTGAT-T C-TGATT CTGATT CTGATT CTGAT--T
* * *
65848619 CTGATT CTGATT CTAATT CTCATT TTGATT CT
1 CTGATT CTGATT CTGATT CTGATT CTGATT CT
65848651 AGTTTTGATA
Statistics
Matches: 59, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
5 3 0.05
6 48 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.12, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:65848597 original size:25 final size:24
Alignment explanation
Indices: 65848569--65848638 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 24
65848559 TTACCTAATA
65848569 CTGATTCTGATTCTACTTCTGTCAC
1 CTGATTCTGATTCTA-TTCTGTCAC
65848594 CTGATTCTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCT-ATTCTGTCAC
65848619 CTGATTCTGATTCTAATTCT
1 CTGATTCTGATTCT-ATTCT
65848639 CATTTTGATT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
25 42 0.98
26 1 0.02
ACGTcount: A:0.17, C:0.24, G:0.13, T:0.46
Consensus pattern (24 bp):
CTGATTCTGATTCTATTCTGTCAC
Found at i:65850566 original size:31 final size:31
Alignment explanation
Indices: 65850531--65850634 Score: 111
Period size: 31 Copynumber: 3.4 Consensus size: 31
65850521 TTGCATTCAC
* * * *
65850531 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGATTCTGTAACCTGATTCTG
* *
65850562 ATTCTGATTCT-ACTTTTGTAACCTAATTCTG
1 ATTCTGATTCTGA-TTCTGTAACCTGATTCTG
* *
65850593 ATTCTGATTCTGATTCTATCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTAACCTGATTCTG
*
65850624 ATTCTAATTCT
1 ATTCTGATTCT
65850635 CATTTTGATT
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
30 1 0.02
31 58 0.97
32 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.11, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTAACCTGATTCTG
Found at i:65850598 original size:6 final size:6
Alignment explanation
Indices: 65850587--65850655 Score: 61
Period size: 6 Copynumber: 11.3 Consensus size: 6
65850577 TTGTAACCTA
* * *
65850587 ATTCTG ATTCTG ATTCTG ATTCT- ATCACCTG ATTCTG ATTCTA ATTCTC
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
65850636 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
65850656 AATGTTTCTT
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
5 3 0.06
6 43 0.84
7 3 0.06
8 2 0.04
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:65861054 original size:14 final size:15
Alignment explanation
Indices: 65861032--65861108 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
65861022 CAATCAAACA
65861032 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
65861046 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
65861061 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
65861081 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
65861095 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
65861109 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:65861073 original size:20 final size:20
Alignment explanation
Indices: 65861048--65861087 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
65861038 AATATTTTCC
*
65861048 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
65861068 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
65861088 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:65861093 original size:34 final size:35
Alignment explanation
Indices: 65861036--65861102 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
65861026 CAAACACCAG
*
65861036 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
65861071 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
65861103 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:65863290 original size:40 final size:40
Alignment explanation
Indices: 65863232--65863550 Score: 476
Period size: 40 Copynumber: 8.0 Consensus size: 40
65863222 GAATACACAT
* * * * *
65863232 CACCAGCATGATTACTCTTCGGGACCTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
65863272 CACCAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * **
65863312 CTCTAGCACGAATGCTCTTCTAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
65863352 CTCTAGCATGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
65863392 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGAATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
65863432 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
65863472 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
65863512 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
65863551 TAACTCTCAA
Statistics
Matches: 255, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 255 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:65870360 original size:27 final size:27
Alignment explanation
Indices: 65870330--65870402 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
65870320 AATAAATGAG
65870330 TATTTTGCCCTTATGTGGTAAAATAAC
1 TATTTTGCCCTTATGTGGTAAAATAAC
* *
65870357 TATTTTGCCCTTATAG-GGTAAGATGAC
1 TATTTTGCCCTTAT-GTGGTAAAATAAC
*
65870384 TATTTTTCCCTTATGTGGT
1 TATTTTGCCCTTATGTGGT
65870403 GTATGCATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
26 1 0.02
27 39 0.95
28 1 0.02
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.44
Consensus pattern (27 bp):
TATTTTGCCCTTATGTGGTAAAATAAC
Found at i:65870741 original size:18 final size:18
Alignment explanation
Indices: 65870718--65870779 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
65870708 ACTTGTATAC
65870718 TGTTACTGCACTAATTAT
1 TGTTACTGCACTAATTAT
* * *
65870736 TGTTACTACACTGATTAC
1 TGTTACTGCACTAATTAT
* * * *
65870754 TATTTCTGTACTAAGTAT
1 TGTTACTGCACTAATTAT
65870772 TGTTACTG
1 TGTTACTG
65870780 TAATAGGCCA
Statistics
Matches: 32, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (18 bp):
TGTTACTGCACTAATTAT
Found at i:65876031 original size:46 final size:46
Alignment explanation
Indices: 65875981--65876156 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
65875971 TGGTTGAGCA
65875981 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
65876027 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
65876072 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
65876120 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65876157 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:65876137 original size:93 final size:93
Alignment explanation
Indices: 65875978--65876149 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
65875968 GGATGGTTGA
* *
65875978 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
65876043 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
65876071 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
65876136 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
65876150 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:65883595 original size:46 final size:46
Alignment explanation
Indices: 65883545--65883720 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
65883535 TGGTTGAGCA
65883545 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
65883591 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
65883636 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
65883684 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65883721 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:65883701 original size:93 final size:93
Alignment explanation
Indices: 65883542--65883713 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
65883532 GGATGGTTGA
* *
65883542 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
65883607 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
65883635 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
65883700 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
65883714 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:65888365 original size:40 final size:40
Alignment explanation
Indices: 65888310--65888534 Score: 231
Period size: 40 Copynumber: 5.6 Consensus size: 40
65888300 TATTCAGATG
*
65888310 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTG-ACT
* * * *
65888350 ATATCTGGACTAAGTCCCGAAGGCATCTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * ** *
65888390 ATATTCGGGCGAAGTTTCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-G--ACT
* *
65888433 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
65888473 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTGTGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
* *
65888513 ATATCC-CGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
65888535 TACTTGGGTT
Statistics
Matches: 151, Mismatches: 29, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
39 13 0.09
40 101 0.67
41 4 0.03
42 1 0.01
43 32 0.21
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:65888464 original size:83 final size:82
Alignment explanation
Indices: 65888310--65888534 Score: 264
Period size: 83 Copynumber: 2.8 Consensus size: 82
65888300 TATTCAGATG
* * * * * *
65888310 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-G-TCCTATATCTGGACTAAGTCCCGAAGG
1 ATATCCGGGCGAAGACCCGAAGGCATTTGTGCGAGTGTTGCTATACCCGGGCTAAGTCCCGAAGG
65888373 CATCTGTGCTAGTGACT
66 CATCTGTGCTAGTGACT
* ***
65888390 ATATTCGGGCGAAGTTTCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCGAAGACCCGAAGGCATTTGTGCGAGT-GTTGCTATACCCGGGCTAAGTCCCGAAG
*
65888455 GCATTTGTGCTAGTGACT
65 GCATCTGTGCTAGTGACT
* * *
65888473 ATATCCGGGCTAAGACCCGAAGGCATTTGT--GTGTGTTGCTATATCCC--GCTAAATCCCGAAG
1 ATATCCGGGCGAAGACCCGAAGGCATTTGTGCGAGTGTTGCTATA-CCCGGGCTAAGTCCCGAAG
65888534 G
65 G
65888535 TACTTGGGTT
Statistics
Matches: 125, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
79 14 0.11
80 40 0.32
81 6 0.05
82 1 0.01
83 64 0.51
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (82 bp):
ATATCCGGGCGAAGACCCGAAGGCATTTGTGCGAGTGTTGCTATACCCGGGCTAAGTCCCGAAGG
CATCTGTGCTAGTGACT
Found at i:65895825 original size:40 final size:40
Alignment explanation
Indices: 65895770--65895990 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
65895760 TATTCGGATG
* *
65895770 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
65895810 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
65895850 ATATCCGGGCGAAGTTCCGAAGG-ATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTACT
* * *
65895892 ATA-CCCGGCTAAGTCCCG-AGGCATTTG-GCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
65895929 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
65895969 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
65895991 TACTTGGGTT
Statistics
Matches: 149, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
37 8 0.05
38 12 0.08
39 29 0.19
40 75 0.50
41 17 0.11
42 8 0.05
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:65895925 original size:79 final size:83
Alignment explanation
Indices: 65895770--65895990 Score: 268
Period size: 79 Copynumber: 2.8 Consensus size: 83
65895760 TATTCGGATG
* * *
65895770 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTCCTATATCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTACCGAAGGCATTTGTGCGAGTAGTTCCTATATCCCGGCTAAGTCCCGAAG
65895832 GCATCTGTGCTAGTGACT
66 GCATCTGTGCTAGTGACT
* * *
65895850 ATATCCGGGCGAAGTTCCGAAGG-ATTTGTGCGAGTAGTTGCTATA-CCCGGCTAAGTCCCG-AG
1 ATATCCGGGCTAAGTACCGAAGGCATTTGTGCGAGTAGTTCCTATATCCCGGCTAAGTCCCGAAG
*
65895912 GCATTTG-GCTAGTGACT
66 GCATCTGTGCTAGTGACT
* *
65895929 ATATCCGGGCTAAG-ACCTGAAGGCATTTGTGC--G-AGTTACTATAT-CCGGCTAAATCCCGAA
1 ATATCCGGGCTAAGTACC-GAAGGCATTTGTGCGAGTAGTTCCTATATCCCGGCTAAGTCCCGAA
65895989 GG
65 GG
65895991 TACTTGGGTT
Statistics
Matches: 124, Mismatches: 10, Indels: 16
0.83 0.07 0.11
Matches are distributed among these distances:
77 22 0.18
78 6 0.05
79 36 0.29
80 36 0.29
81 15 0.12
82 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (83 bp):
ATATCCGGGCTAAGTACCGAAGGCATTTGTGCGAGTAGTTCCTATATCCCGGCTAAGTCCCGAAG
GCATCTGTGCTAGTGACT
Found at i:65898007 original size:39 final size:40
Alignment explanation
Indices: 65897964--65898040 Score: 122
Period size: 40 Copynumber: 1.9 Consensus size: 40
65897954 TTCATCCTTT
*
65897964 TTCA-TTTCTTTTGGCCGAAAA-TTCTATAGGAATGAGGAA
1 TTCATTTTCTTTTGGCCGAAAATTTCTA-AGGAAGGAGGAA
65898003 TTCATTTTCTTTTGGCCGAAAATTTCTAAGGAAGGAGG
1 TTCATTTTCTTTTGGCCGAAAATTTCTAAGGAAGGAGG
65898041 GAGGAGTTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
39 4 0.11
40 26 0.74
41 5 0.14
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (40 bp):
TTCATTTTCTTTTGGCCGAAAATTTCTAAGGAAGGAGGAA
Found at i:65899355 original size:38 final size:38
Alignment explanation
Indices: 65899240--65899371 Score: 120
Period size: 42 Copynumber: 3.2 Consensus size: 38
65899230 ACTCGAATTG
* *
65899240 ATATCCGGGCTAAGTCCCGAAGGCTTTTTGTGCTAAGCAACT
1 ATATCCGGGCTAAGT-CCG-AGGC-ATTTGTGCT-AGCGACT
* *
65899282 ACATCCGGACTAAGATCCGAAGAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCC---GAGGCATTTGTGCTAGCGACT
* * *
65899324 ATATCCGGGCTAAGTCCGAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCGAGGCATTTGTGCTAGCGACT
65899362 ATATTCCGGG
1 ATA-TCCGGG
65899372 TTAAAGACCC
Statistics
Matches: 76, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
38 21 0.28
39 6 0.08
41 3 0.04
42 32 0.42
43 9 0.12
44 4 0.05
45 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (38 bp):
ATATCCGGGCTAAGTCCGAGGCATTTGTGCTAGCGACT
Found at i:66035783 original size:34 final size:35
Alignment explanation
Indices: 66035745--66035816 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
66035735 ATTCTGTAGT
* *
66035745 TAGGGTAATACTG-AAACTGTAGAA-ATTGAGACAG
1 TAGGG-AAAACTGAAAACTGTAGAAGACTGAGACAG
* *
66035779 TAGGGAAAACTGAAAACTTTAGAAGACTGAGACTG
1 TAGGGAAAACTGAAAACTGTAGAAGACTGAGACAG
66035814 TAG
1 TAG
66035817 CTAGGATACG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 6 0.19
34 15 0.47
35 11 0.34
ACGTcount: A:0.42, C:0.10, G:0.26, T:0.22
Consensus pattern (35 bp):
TAGGGAAAACTGAAAACTGTAGAAGACTGAGACAG
Found at i:66040682 original size:39 final size:39
Alignment explanation
Indices: 66040639--66040725 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
66040629 CCGGCAATTA
*
66040639 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTAAACTTATCACCGGCACGAG
* *
66040678 GCCTGCTAGGTATAAACCTAAATTTATCACCGGCATGAG
1 GCCTGCTAGGTATAAACCTAAACTTATCACCGGCACGAG
66040717 GCCTGCTAG
1 GCCTGCTAG
66040726 ACATTAAGTC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTAAACTTATCACCGGCACGAG
Found at i:66043969 original size:42 final size:44
Alignment explanation
Indices: 66043879--66043982 Score: 133
Period size: 42 Copynumber: 2.4 Consensus size: 44
66043869 ATCTTAGACT
* ** *
66043879 TGGTCTTACATGTAAA-CAAATATTGATGCCATTGTCCCAGACA
1 TGGTCTTACATGTAAATCAAATATCGATGCCAACGTCCCAAACA
*
66043922 GGGTCTTACATG-AAATCAAATA-CGATGCCAACGTCCCAAACA
1 TGGTCTTACATGTAAATCAAATATCGATGCCAACGTCCCAAACA
*
66043964 TGGTCTTACAAGTAAATCA
1 TGGTCTTACATGTAAATCA
66043983 TCAGTCGATG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 29 0.56
43 23 0.44
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (44 bp):
TGGTCTTACATGTAAATCAAATATCGATGCCAACGTCCCAAACA
Found at i:66044002 original size:44 final size:42
Alignment explanation
Indices: 66043874--66044017 Score: 121
Period size: 42 Copynumber: 3.4 Consensus size: 42
66043864 CCAACATCTT
* * * *
66043874 AGACTTGGTCTTACATGTAAA-CAAATATTGATGCCATTGTCCC
1 AGACATGGTCTTACAAG-AAATCAAATA-CGATGCCAATGTCCC
* * *
66043917 AGACAGGGTCTTACATGAAATCAAATACGATGCCAACGTCCC
1 AGACATGGTCTTACAAGAAATCAAATACGATGCCAATGTCCC
* * *
66043959 AAACATGGTCTTACAAGTAAATCATCAGT-CGATGCTAATGTCCC
1 AGACATGGTCTTACAAG-AAATCA--AATACGATGCCAATGTCCC
**
66044003 AGATGTGGTCTTACA
1 AGACATGGTCTTACA
66044018 CGATAACACA
Statistics
Matches: 83, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
42 29 0.35
43 27 0.33
44 25 0.30
45 2 0.02
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (42 bp):
AGACATGGTCTTACAAGAAATCAAATACGATGCCAATGTCCC
Found at i:66056772 original size:27 final size:27
Alignment explanation
Indices: 66056714--66056998 Score: 88
Period size: 27 Copynumber: 10.6 Consensus size: 27
66056704 TTAGTTTACC
* * *
66056714 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCCGGTTTATA
*
66056741 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAAATACCCCCGGTTTATA
** ** * *
66056768 AAATTACTGAAATACCGTC-GATTGTA
1 AAATTACCAAAATACCCCCGGTTTATA
** * ** *
66056794 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCCCGGTTTATA
*** * * **
66056821 AAATTATTGAAATACCCTCAGTTTGCA
1 AAATTACCAAAATACCCCCGGTTTATA
** *** * **
66056848 AAATTACTGAAATACCATTGATTTGCA
1 AAATTACCAAAATACCCCCGGTTTATA
** * ** *
66056875 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCCCGGTTTATA
* *
66056902 AAATTTCCAAAGTACCCCCGGTTTATA
1 AAATTACCAAAATACCCCCGGTTTATA
** ** * *
66056929 AAATTACTGAAATACCGTC-GATTGTA
1 AAATTACCAAAATACCCCCGGTTTATA
* ** ** *
66056955 AAATTACTAAAATACCTTCAATTTGTA
1 AAATTACCAAAATACCCCCGGTTTATA
*
66056982 AAATTATCAAAATACCC
1 AAATTACCAAAATACCC
66056999 TTGTACGATA
Statistics
Matches: 207, Mismatches: 49, Indels: 4
0.80 0.19 0.02
Matches are distributed among these distances:
26 45 0.22
27 162 0.78
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCCGGTTTATA
Found at i:66056863 original size:54 final size:53
Alignment explanation
Indices: 66056766--66056987 Score: 257
Period size: 54 Copynumber: 4.2 Consensus size: 53
66056756 CCCCGGTTTA
*
66056766 TAAAATTACTGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCAATTTG
1 TAAAATTACTGAAATACCCTCGATTGTAAAATTACTGAAATACCCTCAATTTG
* * * * **
66056819 TAAAATTATTGAAATACCCTCAGTTTGCAAAATTACTGAAATACCATTGATTTG
1 TAAAATTACTGAAATACCCTC-GATTGTAAAATTACTGAAATACCCTCAATTTG
* * * * ** *
66056873 CAAAATTACTGAAATACCCTCGACTTGTAAAATTTC-CAAAGTACCCCCGGTTTA
1 TAAAATTACTGAAATACCCTCGA-TTGTAAAATTACTGAAA-TACCCTCAATTTG
* * *
66056927 TAAAATTACTGAAATACCGTCGATTGTAAAATTACTAAAATACCTTCAATTTG
1 TAAAATTACTGAAATACCCTCGATTGTAAAATTACTGAAATACCCTCAATTTG
66056980 TAAAATTA
1 TAAAATTA
66056988 TCAAAATACC
Statistics
Matches: 138, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
53 50 0.36
54 88 0.64
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (53 bp):
TAAAATTACTGAAATACCCTCGATTGTAAAATTACTGAAATACCCTCAATTTG
Found at i:66057021 original size:27 final size:27
Alignment explanation
Indices: 66056991--66057231 Score: 254
Period size: 27 Copynumber: 8.9 Consensus size: 27
66056981 AAAATTATCA
* * * *
66056991 AAATACCCTTGTACGATAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACTG
* **
66057018 AAATACCCCTGTAAAGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACTG
*
66057045 AAATAGCCC-TGTAGGGTAGAATTACTA
1 AAATA-CCCTTGTAGGGTAGAATTACTG
*
66057072 AAATACCCCTGTAGGGTAGAATTA-TCG
1 AAATACCCTTGTAGGGTAGAATTACT-G
* * *
66057099 AAATACCCCTATAGGGTAAAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACTG
*
66057126 AAATACCAC-TGAAGGGTAGAATTACTG
1 AAATACC-CTTGTAGGGTAGAATTACTG
* * *
66057153 AAATACCATTGTAGGGTAGAAATACTA
1 AAATACCCTTGTAGGGTAGAATTACTG
*
66057180 AAATACCCTTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACTG
* * *
66057207 AGATACCCTTGTGGGGTAAAATTAC
1 AAATACCCTTGTAGGGTAGAATTAC
66057232 CATGTTGCCC
Statistics
Matches: 182, Mismatches: 26, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
26 4 0.02
27 173 0.95
28 5 0.03
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACTG
Found at i:66057043 original size:161 final size:162
Alignment explanation
Indices: 66056736--66057054 Score: 439
Period size: 161 Copynumber: 2.0 Consensus size: 162
66056726 TACCCCTGGT
66056736 TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTCGATTGTAAAATTAC
1 TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTCGATTGTAAAATTAC
* ** ** * * *
66056801 TGAAATACCCTCAATTTGTAAAATTATTGAAATACCCTCAGTTTGCAAAATTACTGAAATACCAT
66 TAAAATACCCTCAATTTGTAAAATTATCAAAATACCCTCAGTACGCAAAAATACCGAAATACCAC
**
66056866 TGATTTGCAAAATTACTGAAATA-CCCTCGAC
131 TGATAAGCAAAATTACTGAAATAGCCCTCGAC
*
66056897 TTGTAAAATTTCCAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTCGATTGTAAAATTAC
1 TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTCGATTGTAAAATTAC
* *
66056962 TAAAATACCTTCAATTTGTAAAATTATCAAAATACCCT-TGTACG-ATAGAAATACCGAAATACC
66 TAAAATACCCTCAATTTGTAAAATTATCAAAATACCCTCAGTACGCA-A-AAATACCGAAATACC
* * *
66057025 CCTG-TAAAGTAGAATTACTGAAATAGCCCT
129 ACTGAT-AAGCAAAATTACTGAAATAGCCCT
66057055 GTAGGGTAGA
Statistics
Matches: 138, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
159 1 0.01
160 5 0.04
161 128 0.93
162 4 0.03
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.30
Consensus pattern (162 bp):
TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTCGATTGTAAAATTAC
TAAAATACCCTCAATTTGTAAAATTATCAAAATACCCTCAGTACGCAAAAATACCGAAATACCAC
TGATAAGCAAAATTACTGAAATAGCCCTCGAC
Found at i:66057068 original size:81 final size:80
Alignment explanation
Indices: 66056990--66057231 Score: 286
Period size: 81 Copynumber: 3.0 Consensus size: 80
66056980 TAAAATTATC
* * **
66056990 AAAATACCCTTGTACGATAGAAATACCGAAATACCCCTGTAAAGTAGAATTACTGAAATAGCCCT
1 AAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATA-CCCT
66057055 GTAGGGTAGAATTACT
65 GTAGGGTAGAATTACT
* * * * *
66057071 AAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAAAATTACTGAAATACCACT
1 AAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACC-CT
*
66057136 GAAGGGTAGAATTACT
65 GTAGGGTAGAATTACT
* * ** * * *
66057152 GAAATACCATTGTAGGGTAGAAATACTAAAATACCCTTGTAGGGTAGAATTACCGAGATACCCTT
1 AAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCC-T
* *
66057217 GTGGGGTAAAATTAC
65 GTAGGGTAGAATTAC
66057232 CATGTTGCCC
Statistics
Matches: 134, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
80 3 0.02
81 131 0.98
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.25
Consensus pattern (80 bp):
AAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTG
TAGGGTAGAATTACT
Found at i:66057928 original size:27 final size:26
Alignment explanation
Indices: 66057884--66057935 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
66057874 CTCGCTGCAA
*
66057884 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
66057911 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
66057936 GCAGCCTTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:66058003 original size:26 final size:27
Alignment explanation
Indices: 66057974--66058033 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
66057964 CCACATATAT
*
66057974 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
66058000 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
66058027 ATATCTG
1 ATATCTG
66058034 CAGCCTCGCT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:66058597 original size:24 final size:24
Alignment explanation
Indices: 66058570--66058647 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
66058560 AAGGCTGTCA
*
66058570 GGAGAAGATTTGGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
66058594 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
66058618 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
66058642 GAAGAA
1 GGAGAA
66058648 TGGTGTTGGC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.35, C:0.04, G:0.41, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:66060113 original size:27 final size:27
Alignment explanation
Indices: 66060073--66060183 Score: 170
Period size: 27 Copynumber: 4.1 Consensus size: 27
66060063 AGGAAGCGTC
* *
66060073 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
66060100 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
66060127 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
66060154 CTGGTGGCTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
66060180 CTGG
1 CTGG
66060184 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
26 13 0.17
27 65 0.83
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:66067436 original size:17 final size:17
Alignment explanation
Indices: 66067414--66067447 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
66067404 GTCCAATTAA
66067414 AAAAATTTAAAAAATTT
1 AAAAATTTAAAAAATTT
*
66067431 AAAAATTTTAAAAATTT
1 AAAAATTTAAAAAATTT
66067448 TTTAAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAAATTTAAAAAATTT
Found at i:66067448 original size:9 final size:9
Alignment explanation
Indices: 66067408--66067444 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
66067398 CGATCGGTCC
*
66067408 AATTAAAAA
1 AATTTAAAA
66067417 AATTTAAAA
1 AATTTAAAA
66067426 AATTTAAAA
1 AATTTAAAA
*
66067435 ATTTTAAAA
1 AATTTAAAA
66067444 A
1 A
66067445 TTTTTTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AATTTAAAA
Found at i:66067455 original size:11 final size:9
Alignment explanation
Indices: 66067413--66067448 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
66067403 GGTCCAATTA
*
66067413 AAAAAATTT
1 AAAAATTTT
*
66067422 AAAAAATTT
1 AAAAATTTT
66067431 AAAAATTTT
1 AAAAATTTT
66067440 AAAAATTTT
1 AAAAATTTT
66067449 TTAAAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
AAAAATTTT
Found at i:66071219 original size:18 final size:19
Alignment explanation
Indices: 66071196--66071247 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
66071186 GGTTGAATCG
66071196 TATTTTATAATTTAT-AAT
1 TATTTTATAATTTATAAAT
* *
66071214 TATTTTTTATTTTTATAAAT
1 TATTTTATA-ATTTATAAAT
*
66071234 T-TTTAATAATTTAT
1 TATTTTATAATTTAT
66071248 TTTATTTGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
18 13 0.48
19 10 0.37
20 4 0.15
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TATTTTATAATTTATAAAT
Found at i:66071240 original size:27 final size:28
Alignment explanation
Indices: 66071198--66071254 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
66071188 TTGAATCGTA
*
66071198 TTTTATAATTTATAATTA-TT-TTTTAT
1 TTTTATAATTTATAATAATTTATTTTAT
*
66071224 TTTTATAAATTTTTAATAATTTATTTTAT
1 TTTTAT-AATTTATAATAATTTATTTTAT
66071253 TT
1 TT
66071255 GAATTAAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.23
27 10 0.38
28 2 0.08
29 8 0.31
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (28 bp):
TTTTATAATTTATAATAATTTATTTTAT
Found at i:66072174 original size:30 final size:29
Alignment explanation
Indices: 66072140--66072316 Score: 127
Period size: 30 Copynumber: 6.1 Consensus size: 29
66072130 GATTTTTAAA
*
66072140 TAAATTAAGTAAATTAGGGTTTTAGGGTTT
1 TAAATTAATTAAATTAGGG-TTTAGGGTTT
*
66072170 TAAA-TAAATAAA--A----TTAGGGTTT
1 TAAATTAATTAAATTAGGGTTTAGGGTTT
** * *
66072192 TAAAGGAATGAAACTAGGGTTTATGGTGTTT
1 TAAATTAATTAAATTAGGGTTTA-GG-GTTT
* *
66072223 AAATAAATAAATTAAATTAGGGTTCTATGGTTT
1 ---TAAATTAATTAAATTAGGGTT-TAGGGTTT
*
66072256 TAAATAAATTAAATTAGGGTTTAGGG-TT
1 TAAATTAATTAAATTAGGGTTTAGGGTTT
* **
66072284 AAAATTAATTAAATTAGGGTTTAGTTTTT
1 TAAATTAATTAAATTAGGGTTTAGGGTTT
66072313 TAAA
1 TAAA
66072317 AAATAACATT
Statistics
Matches: 118, Mismatches: 15, Indels: 29
0.73 0.09 0.18
Matches are distributed among these distances:
22 13 0.11
23 5 0.04
25 1 0.01
27 1 0.01
28 24 0.20
29 19 0.16
30 27 0.23
31 4 0.03
33 4 0.03
34 18 0.15
35 2 0.02
ACGTcount: A:0.40, C:0.01, G:0.19, T:0.40
Consensus pattern (29 bp):
TAAATTAATTAAATTAGGGTTTAGGGTTT
Found at i:66072189 original size:22 final size:22
Alignment explanation
Indices: 66072161--66072213 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
66072151 AATTAGGGTT
*
66072161 TTAGGGTTTTAAATAAATAAAA
1 TTAGGGTTTTAAAGAAATAAAA
* *
66072183 TTAGGGTTTTAAAGGAATGAAA
1 TTAGGGTTTTAAAGAAATAAAA
*
66072205 CTAGGGTTT
1 TTAGGGTTT
66072214 ATGGTGTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.40, C:0.02, G:0.23, T:0.36
Consensus pattern (22 bp):
TTAGGGTTTTAAAGAAATAAAA
Found at i:66072269 original size:35 final size:34
Alignment explanation
Indices: 66072206--66072322 Score: 107
Period size: 28 Copynumber: 3.8 Consensus size: 34
66072196 GGAATGAAAC
66072206 TAGGGTTTATGGTGTTTAAATAAATAAATTAAAT
1 TAGGGTTTATGGTGTTTAAATAAATAAATTAAAT
66072240 TAGGGTTCTAT-G-GTTT---TAAATAAATTAAAT
1 TAGGGTT-TATGGTGTTTAAATAAATAAATTAAAT
*
66072270 TAGGGTTTA-GG-G-TT--A-AAATTAATTAAAT
1 TAGGGTTTATGGTGTTTAAATAAATAAATTAAAT
* *
66072298 TAGGGTTTA-GTTTTTTAAA-AAATAA
1 TAGGGTTTATGGTGTTTAAATAAATAA
66072323 CATTGTGTTT
Statistics
Matches: 72, Mismatches: 4, Indels: 16
0.78 0.04 0.17
Matches are distributed among these distances:
28 24 0.33
29 4 0.06
30 23 0.32
32 6 0.08
33 4 0.06
34 8 0.11
35 3 0.04
ACGTcount: A:0.39, C:0.01, G:0.18, T:0.42
Consensus pattern (34 bp):
TAGGGTTTATGGTGTTTAAATAAATAAATTAAAT
Done.