Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 202 of 352
Found at i:66775348 original size:29 final size:29
Alignment explanation
Indices: 66775293--66775404 Score: 140
Period size: 29 Copynumber: 3.9 Consensus size: 29
66775283 GTGAGCATGA
* * *
66775293 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
66775321 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
66775350 ATATACAA-GTGATTTGGGCCTAATGGGCC
1 ATATA-AATGTGATTTGGGCCTAATGGGCC
* * *
66775379 ATATGAATATGATTT-GGCTTAATGGG
1 ATATAAATGTGATTTGGGCCTAATGGG
66775405 TCAGATACAG
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
28 23 0.31
29 50 0.67
30 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:66776314 original size:18 final size:18
Alignment explanation
Indices: 66776268--66776320 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
66776258 TGTAATAAGG
66776268 TTTTCATTATGTTATTATTA
1 TTTTCATTA--TTATTATTA
* **
66776288 CTTAAATTATTATTATTA
1 TTTTCATTATTATTATTA
*
66776306 TTTTCATTATAATTA
1 TTTTCATTATTATTA
66776321 CGAGAAGTTG
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
18 20 0.77
20 6 0.23
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (18 bp):
TTTTCATTATTATTATTA
Found at i:66784588 original size:16 final size:16
Alignment explanation
Indices: 66784567--66784597 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66784557 GTAATGCCCT
*
66784567 AAAAATCTCGAAATCC
1 AAAAATCCCGAAATCC
66784583 AAAAATCCCGAAATC
1 AAAAATCCCGAAATC
66784598 TTAAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.26, G:0.06, T:0.16
Consensus pattern (16 bp):
AAAAATCCCGAAATCC
Found at i:66796618 original size:46 final size:46
Alignment explanation
Indices: 66796555--66796776 Score: 313
Period size: 46 Copynumber: 4.8 Consensus size: 46
66796545 TTCGACATGA
* * * * *
66796555 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCACGT
* * ** **
66796601 TGCCATGGTATCATTCAACCACGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-CATGTCACGT
66796648 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
66796694 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
66796740 TGCCATGGTATCTTTCAACCATGGTCTTACAC-TTTCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66796777 ACCATGGTCT
Statistics
Matches: 160, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
45 8 0.05
46 114 0.71
47 38 0.24
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
Found at i:66796690 original size:93 final size:92
Alignment explanation
Indices: 66796555--66796776 Score: 313
Period size: 93 Copynumber: 2.4 Consensus size: 92
66796545 TTCGACATGA
* * * * *
66796555 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCATTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCACGTTGCCATGGTATCATTCAA
** *
66796619 CCACGGTCTTATTCATTTCCCCGTCACGT
65 CCACGGTCTTACACATTT-CACGTCACGT
*
66796648 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCATTCAAC
* *
66796713 CATGGTCTTACACATTTCATGTCACGT
66 CACGGTCTTACACATTTCACGTCACGT
66796740 TGCCATGGTATCTTTCAACCATGGTCTTACAC-TTTCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66796777 ACCATGGTCT
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
91 5 0.04
92 44 0.38
93 68 0.58
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCATTCAAC
CACGGTCTTACACATTTCACGTCACGT
Found at i:66796776 original size:20 final size:20
Alignment explanation
Indices: 66796751--66796797 Score: 85
Period size: 20 Copynumber: 2.3 Consensus size: 20
66796741 GCCATGGTAT
66796751 CTTTCAACCATGGTCTTACA
1 CTTTCAACCATGGTCTTACA
66796771 CTTTCAACCATGGTCTTACA
1 CTTTCAACCATGGTCTTACA
66796791 CATTTCA
1 C-TTTCA
66796798 TGTCACGTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.36
Consensus pattern (20 bp):
CTTTCAACCATGGTCTTACA
Found at i:66796780 original size:66 final size:66
Alignment explanation
Indices: 66796705--66796843 Score: 269
Period size: 66 Copynumber: 2.1 Consensus size: 66
66796695 GCCATGGTAT
66796705 CTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
1 CTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
66796770 A
66 A
66796771 CTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
1 CTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
66796836 A
66 A
66796837 CATTTCA
1 C-TTTCA
66796844 TATCAGGTTG
Statistics
Matches: 72, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
66 67 0.93
67 5 0.07
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (66 bp):
CTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
A
Found at i:66796856 original size:112 final size:112
Alignment explanation
Indices: 66796659--66796883 Score: 432
Period size: 112 Copynumber: 2.0 Consensus size: 112
66796649 GCCATGGTAT
66796659 CTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
1 CTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
*
66796724 ACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACA
66 ACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACA
66796771 CTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
1 CTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
*
66796836 ACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
66 ACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACA
66796883 C
1 C
66796884 GTTCCATATC
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
112 111 1.00
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (112 bp):
CTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTAC
ACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACA
Found at i:66796929 original size:158 final size:160
Alignment explanation
Indices: 66796614--66796935 Score: 531
Period size: 158 Copynumber: 2.0 Consensus size: 160
66796604 CATGGTATCA
** *
66796614 TTCAACCACGGTCTTATTCATTTCCCCGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACA
1 TTCAACCACGGTCTTACACATTTCCACGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACA
* * *
66796679 CATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCC
66 CATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCACGTTGCC
66796744 ATGGTATCTTTCAACCATGGTCTTACAC-T
131 ATGGTATCTTTCAACCATGGTCTTACACAT
* *
66796773 TTCAACCATGGTCTTACACATTT-CATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACA
1 TTCAACCACGGTCTTACACATTTCCACGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACA
* * *
66796837 CATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACGTTCCATATCAGGTTGCC
66 CATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCACGTTGCC
66796902 ATGGTATCTTTCAACCATGGTCTTACACAT
131 ATGGTATCTTTCAACCATGGTCTTACACAT
66796932 TTCA
1 TTCA
66796936 TATCAAGTTG
Statistics
Matches: 151, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
158 126 0.83
159 25 0.17
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (160 bp):
TTCAACCACGGTCTTACACATTTCCACGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACA
CATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCACGTTGCC
ATGGTATCTTTCAACCATGGTCTTACACAT
Found at i:66797007 original size:250 final size:250
Alignment explanation
Indices: 66796555--66797021 Score: 731
Period size: 250 Copynumber: 1.9 Consensus size: 250
66796545 TTCGACATGA
* * * * *
66796555 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCATTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGTTGCCATGGTATCATTCAAC
* * *
66796620 CACGGTCTTATTCATTTCCCCGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
66 CACGGTCTTA-TCAGTTCCACATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
* * *
66796685 ATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTA
130 ATATCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
66796750 TCTTTCAACCATGGTCTTACACTTTCAACCATGGTCTTACACATTTCATGTCACGT
195 TCTTTCAACCATGGTCTTACACTTTCAACCATGGTCTTACACATTTCATGTCACGT
* *
66796806 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAA
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAGGTTGCCATGGTATCATTCAA
* * *
66796870 CCATGGTCTTA-CACGTTCCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
65 CCACGGTCTTATCA-GTTCCACATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
* *
66796934 CATATCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGTTGCCATGGT
129 CATATCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGT
66796999 ATCTTTCAACCATGGTCTTACAC
194 ATCTTTCAACCATGGTCTTACAC
66797022 ATTTTCTATC
Statistics
Matches: 196, Mismatches: 18, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
249 2 0.01
250 132 0.67
251 62 0.32
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (250 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGTTGCCATGGTATCATTCAAC
CACGGTCTTATCAGTTCCACATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TATCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTAT
CTTTCAACCATGGTCTTACACTTTCAACCATGGTCTTACACATTTCATGTCACGT
Found at i:66797032 original size:46 final size:46
Alignment explanation
Indices: 66796771--66797025 Score: 456
Period size: 46 Copynumber: 5.5 Consensus size: 46
66796761 TGGTCTTACA
* *
66796771 CTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTAT
66796817 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTAT
* *
66796863 CTTTCAACCATGGTCTTACACGTTCCATATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTAT
*
66796909 CTTTCAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTAT
*
66796955 CTTTCAACCATGGTCTTACACGTTTCATATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTAT
66797001 CTTTCAACCATGGTCTTACACATTT
1 CTTTCAACCATGGTCTTACACATTT
66797026 TCTATCATAG
Statistics
Matches: 199, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 199 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (46 bp):
CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTAT
Found at i:66802492 original size:54 final size:54
Alignment explanation
Indices: 66802406--66802537 Score: 196
Period size: 54 Copynumber: 2.4 Consensus size: 54
66802396 AGGCACCTGT
*
66802406 ATCACTCCATTTTGAACCAGTCCATAAGTTGTTCGCATCATTTGAAGCCTC-AG
1 ATCACTCCATTTTGAACCAGTCCATAAGTTGTTCGCATCATTTGAAGCATCAAG
*
66802459 CATCACTCCATTTTGAACCAGTCCATGAA-TTGTTTGCATCATTTGAAGCATCAAG
1 -ATCACTCCATTTTGAACCAGTCCAT-AAGTTGTTCGCATCATTTGAAGCATCAAG
* *
66802514 ATCACTCCATTTTGGACCATTCCA
1 ATCACTCCATTTTGAACCAGTCCA
66802538 GGGTATCTCA
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
54 68 0.94
55 4 0.06
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.33
Consensus pattern (54 bp):
ATCACTCCATTTTGAACCAGTCCATAAGTTGTTCGCATCATTTGAAGCATCAAG
Found at i:66803263 original size:24 final size:24
Alignment explanation
Indices: 66803236--66803281 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
66803226 CTACGAACTG
* *
66803236 GACTCCGGCTCCTGCTTCTACTTC
1 GACTCCGGCTCCAGCTCCTACTTC
* *
66803260 GACTTCTGCTCCAGCTCCTACT
1 GACTCCGGCTCCAGCTCCTACT
66803282 CCTGCTTCTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.11, C:0.41, G:0.15, T:0.33
Consensus pattern (24 bp):
GACTCCGGCTCCAGCTCCTACTTC
Found at i:66809983 original size:27 final size:27
Alignment explanation
Indices: 66809952--66810014 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
66809942 CTACGAGGTA
*
66809952 GGTTCACTAAA-TGTGTGGGCGAGCTGG
1 GGTTCACCAAACTGT-TGGGCGAGCTGG
* *
66809979 TGTTCACCAAACTGTTTGGCGAGCTGG
1 GGTTCACCAAACTGTTGGGCGAGCTGG
66810006 GGTTCACCA
1 GGTTCACCA
66810015 GTCTTGCTGC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 28 0.90
28 3 0.10
ACGTcount: A:0.19, C:0.21, G:0.33, T:0.27
Consensus pattern (27 bp):
GGTTCACCAAACTGTTGGGCGAGCTGG
Found at i:66810644 original size:41 final size:41
Alignment explanation
Indices: 66810589--66810686 Score: 133
Period size: 41 Copynumber: 2.4 Consensus size: 41
66810579 TTATAAGTTA
* *
66810589 TGTATCAGCAAAGCTCCCCTTATGAACTTATGGATAAGGTG
1 TGTATCAACGAAGCTCCCCTTATGAACTTATGGATAAGGTG
* * * * *
66810630 TGTATTAACGAAGCTCCTCTTGTGAGCTTATGGATAAGTTG
1 TGTATCAACGAAGCTCCCCTTATGAACTTATGGATAAGGTG
66810671 TGTATCAACGAAGCTC
1 TGTATCAACGAAGCTC
66810687 TTAAGAGCTT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (41 bp):
TGTATCAACGAAGCTCCCCTTATGAACTTATGGATAAGGTG
Found at i:66810697 original size:38 final size:38
Alignment explanation
Indices: 66810615--66810722 Score: 119
Period size: 38 Copynumber: 2.8 Consensus size: 38
66810605 CCCTTATGAA
* * **
66810615 CTTATGGATAAGGTGTGTATTAACGAAGCTCCTCTTGTGAG
1 CTTATGGATAAGCTGTGTATCAACGAAG---CTCTTAAGAG
*
66810656 CTTATGGATAAGTTGTGTATCAACGAAGCTCTTAAGAG
1 CTTATGGATAAGCTGTGTATCAACGAAGCTCTTAAGAG
*
66810694 CTTAAT-GATAAGCTGTGTATCAGCGAAGC
1 CTT-ATGGATAAGCTGTGTATCAACGAAGC
66810723 ACAAGCCAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
38 32 0.53
39 2 0.03
41 26 0.43
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (38 bp):
CTTATGGATAAGCTGTGTATCAACGAAGCTCTTAAGAG
Found at i:66818684 original size:19 final size:19
Alignment explanation
Indices: 66818660--66818698 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
66818650 CACATAAACA
66818660 AAAAGACCAAGTCCCCTAT
1 AAAAGACCAAGTCCCCTAT
66818679 AAAAGACCAAGTCCCCTAT
1 AAAAGACCAAGTCCCCTAT
66818698 A
1 A
66818699 CATGCCAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.31, G:0.10, T:0.15
Consensus pattern (19 bp):
AAAAGACCAAGTCCCCTAT
Found at i:66822265 original size:24 final size:24
Alignment explanation
Indices: 66822222--66822273 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
66822212 GGGTAACACA
*
66822222 GCTCTTCATAAGCATCCTGATATAG
1 GCTCTTCATAAGCATCCTGACAT-G
* *
66822247 GCTCTT-ATGAGCTTCCTGACATG
1 GCTCTTCATAAGCATCCTGACATG
66822270 GCTC
1 GCTC
66822274 GCTTGAACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 5 0.21
24 13 0.54
25 6 0.25
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (24 bp):
GCTCTTCATAAGCATCCTGACATG
Found at i:66826075 original size:39 final size:40
Alignment explanation
Indices: 66825980--66826163 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
66825970 TTGAATGATG
*
66825980 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
66826019 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
* *
66826058 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* *
66826098 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* *
66826138 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
66826164 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
39 55 0.43
40 72 0.56
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:66826115 original size:79 final size:80
Alignment explanation
Indices: 66825980--66826163 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 80
66825970 TTGAATGATG
*
66825980 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAATCCGGACTAAGATCCGAAGGCATTT
66826044 GTGCGAGATACTA-A
66 GTGCGAGATACTATA
* * **
66826058 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AAATCCGGACTAAGAT-CCGAAGGCA
*
66826120 TTTGTGCGAGTTACTATA
63 TTTGTGCGAGATACTATA
* *
66826138 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
66826164 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
78 15 0.16
79 62 0.67
80 15 0.16
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATA
Found at i:66826185 original size:79 final size:79
Alignment explanation
Indices: 66825981--66826196 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
66825971 TGAATGATGT
** * * **
66825981 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-ATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
66826043 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
66826060 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
66826125 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
66826139 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
66826197 TACGTGATTT
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
78 17 0.15
79 74 0.64
80 25 0.22
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:66833831 original size:39 final size:40
Alignment explanation
Indices: 66833736--66833957 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
66833726 TTTAATGATG
*
66833736 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC--AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
66833774 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
66833815 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
66833853 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
66833892 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
66833931 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
66833958 AACGAGGAGA
Statistics
Matches: 164, Mismatches: 10, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 38 0.23
39 55 0.34
40 68 0.41
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:66833979 original size:79 final size:77
Alignment explanation
Indices: 66833788--66833980 Score: 187
Period size: 77 Copynumber: 2.5 Consensus size: 77
66833778 GGACTAAGAT
** * * *
66833788 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCATTGTGCGAGATACTAA
1 CCGAAGGCATTTGAACGAG-TGAATAAATCCGGGTTAAGCCCGAAGGCATTGTGCGAGATACTAA
*
66833852 TTCCGGGCTAAGC
65 TACCGGGCTAAGC
** * * *
66833865 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTGAATAAATCCGGGTTAAG-CCCGAAGGCA-TTGTGCGAGATACTA
*
66833929 ATAACCGGGCTATGTC
64 AT-ACCGGGCTAAG-C
*
66833945 CCGAAGGCATTTGAACGAG-GAGATATATCC-GGTTAA
1 CCGAAGGCATTTGAACGAGTGA-ATAAATCCGGGTTAA
66833981 ATTTCGAAGG
Statistics
Matches: 100, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
76 1 0.01
77 34 0.34
78 12 0.12
79 29 0.29
80 24 0.24
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (77 bp):
CCGAAGGCATTTGAACGAGTGAATAAATCCGGGTTAAGCCCGAAGGCATTGTGCGAGATACTAAT
ACCGGGCTAAGC
Found at i:66833990 original size:79 final size:78
Alignment explanation
Indices: 66833826--66833982 Score: 176
Period size: 79 Copynumber: 2.0 Consensus size: 78
66833816 CCGGGCTAAG
* ** * *
66833826 CCCGAAGGCATTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCCGAAGGCATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGAATAA
*
66833891 ATCCGGGTTAAGT
66 ATCCGGGTTAAAT
* *
66833904 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCCGAAGGCA-TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
*
66833967 ATATATCC-GGTTAAAT
62 ATAAATCCGGGTTAAAT
66833983 TTCGAAGGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
78 12 0.18
79 30 0.45
80 24 0.36
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCCGAAGGCATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGAATAA
ATCCGGGTTAAAT
Found at i:66849631 original size:20 final size:20
Alignment explanation
Indices: 66849606--66849656 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
66849596 TTCATGCACT
* *
66849606 CATAAAATCATACTATAACA
1 CATAAAATAATACTAAAACA
*
66849626 CATAAAATAATATTAAAACA
1 CATAAAATAATACTAAAACA
66849646 -ATAAAAATAAT
1 CAT-AAAATAAT
66849657 TTCTCAGCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 2 0.07
20 25 0.93
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.25
Consensus pattern (20 bp):
CATAAAATAATACTAAAACA
Found at i:66857660 original size:24 final size:24
Alignment explanation
Indices: 66857607--66857660 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
66857597 TAATTAGAAA
* *
66857607 TAAAAGATTAATAATTTAATAAAT
1 TAAAAGATTAATAATTAAAAAAAT
66857631 TGAAAA-ATTAATCAATTAAAAAAAT
1 T-AAAAGATTAAT-AATTAAAAAAAT
66857656 TAAAA
1 TAAAA
66857661 TTTTGGGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (24 bp):
TAAAAGATTAATAATTAAAAAAAT
Found at i:66859151 original size:21 final size:20
Alignment explanation
Indices: 66859106--66859151 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
66859096 GTTTTAAATG
* *
66859106 TTTTTTAGTCTTTAAATTGA
1 TTTTTTAGCCGTTAAATTGA
*
66859126 GTTTTTAGCCGTTAAATTGCA
1 TTTTTTAGCCGTTAAATTG-A
66859147 TTTTT
1 TTTTT
66859152 AAATAAAAGC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.22, C:0.09, G:0.13, T:0.57
Consensus pattern (20 bp):
TTTTTTAGCCGTTAAATTGA
Found at i:66859152 original size:20 final size:20
Alignment explanation
Indices: 66859107--66859144 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
66859097 TTTTAAATGT
* *
66859107 TTTTTAGTCTTTAAATTGAG
1 TTTTTAGCCGTTAAATTGAG
66859127 TTTTTAGCCGTTAAATTG
1 TTTTTAGCCGTTAAATTG
66859145 CATTTTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.53
Consensus pattern (20 bp):
TTTTTAGCCGTTAAATTGAG
Found at i:66861608 original size:27 final size:27
Alignment explanation
Indices: 66861578--66861760 Score: 183
Period size: 27 Copynumber: 6.8 Consensus size: 27
66861568 CAATTTGTAA
**
66861578 AATTACCAAAGTACCCTCGATTTACAG
1 AATTACCATTGTACCCTCGATTTACAG
* * *
66861605 AATTACCGTT-T-CACATCGATTTACAA
1 AATTACCATTGTAC-CCTCGATTTACAG
* *
66861631 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTGTACCCTCGATTTACAG
*
66861658 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTGTACCCTCGATTTACAG
* * * * *
66861685 AATTACCGTTTTACCATCGATTTATAA
1 AATTACCATTGTACCCTCGATTTACAG
* *
66861712 AATTACCATTTTACCCTC-AGTTTACAA
1 AATTACCATTGTACCCTCGA-TTTACAG
*
66861739 AATTACCATTTTACCCTCGATT
1 AATTACCATTGTACCCTCGATT
66861761 GTGAAATTAC
Statistics
Matches: 134, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
25 1 0.01
26 22 0.16
27 109 0.81
28 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37
Consensus pattern (27 bp):
AATTACCATTGTACCCTCGATTTACAG
Found at i:66861697 original size:54 final size:54
Alignment explanation
Indices: 66861589--66861760 Score: 249
Period size: 54 Copynumber: 3.2 Consensus size: 54
66861579 ATTACCAAAG
* * * *
66861589 TACCCTCGATTTACAGAATTACCGTTTCA-CATCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
* *
66861642 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
* *
66861696 TACCATCGATTTATAAAATTACCATTTTACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGA-TTTACAAAATTACCATTT
66861750 TACCCTCGATT
1 TACCCTCGATT
66861761 GTGAAATTAC
Statistics
Matches: 106, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 27 0.25
54 79 0.75
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
Found at i:66861743 original size:81 final size:80
Alignment explanation
Indices: 66861589--66861760 Score: 283
Period size: 81 Copynumber: 2.1 Consensus size: 80
66861579 ATTACCAAAG
66861589 TACCCTCGATTTACAGAATTACCGTTTCACATCGATTTACAAAATTACCATTTTACCCTCGATTT
1 TACCCTCGATTTACAGAATTACCGTTTCACATCGATTTACAAAATTACCATTTTACCCTCGATTT
* *
66861654 ATAGAATTACCATTT
66 ACAAAATTACCATTT
* *
66861669 TACCCTCGATTTACAGAATTACCGTTTTACCATCGATTTATAAAATTACCATTTTACCCTC-AGT
1 TACCCTCGATTTACAGAATTACCGTTTCA-CATCGATTTACAAAATTACCATTTTACCCTCGA-T
66861733 TTACAAAATTACCATTT
64 TTACAAAATTACCATTT
66861750 TACCCTCGATT
1 TACCCTCGATT
66861761 GTGAAATTAC
Statistics
Matches: 86, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
80 29 0.34
81 57 0.66
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTACCGTTTCACATCGATTTACAAAATTACCATTTTACCCTCGATTT
ACAAAATTACCATTT
Found at i:66861782 original size:27 final size:27
Alignment explanation
Indices: 66861759--66861887 Score: 120
Period size: 27 Copynumber: 4.8 Consensus size: 27
66861749 TTACCCTCGA
*
66861759 TTGTGAAATTACTGAAATACCCCT-GT
1 TTGTGAAATTACCGAAATACCCCTAGT
** *
66861785 AGGAT-AGAATTACCAAAATACCCCTAGT
1 TTG-TGA-AATTACCGAAATACCCCTAGT
* * *
66861813 TTGTAAAATTACTGAAATACCACTAGT
1 TTGTGAAATTACCGAAATACCCCTAGT
* *
66861840 TTGTGAAATTACCGAAATACCTC-AAT
1 TTGTGAAATTACCGAAATACCCCTAGT
* *
66861866 TTGTAAAATTACCAAAATACCC
1 TTGTGAAATTACCGAAATACCC
66861888 TTGATTTACA
Statistics
Matches: 83, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
26 23 0.28
27 56 0.67
28 4 0.05
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (27 bp):
TTGTGAAATTACCGAAATACCCCTAGT
Found at i:66861974 original size:27 final size:27
Alignment explanation
Indices: 66861811--66861980 Score: 112
Period size: 27 Copynumber: 6.3 Consensus size: 27
66861801 AATACCCCTA
* *
66861811 GTTTGTAAAATTACTGAAATACCACTA
1 GTTTGTAAAATTACTGAAATACCATTG
* * **
66861838 GTTTGTGAAATTACCGAAATACC-TCA
1 GTTTGTAAAATTACTGAAATACCATTG
* ** *
66861864 ATTTGTAAAATTACCAAAATACCCTTG
1 GTTTGTAAAATTACTGAAATACCATTG
* ** *
66861891 ATTTACAAAATTA-TAGAAATACCCTTG
1 GTTTGTAAAATTACT-GAAATACCATTG
* * *
66861918 ACTTTCTAAAAATTA-TAAAAATACCATTG
1 -GTTTGT-AAAATTACT-GAAATACCATTG
* *
66861947 GTTTATAAAATTACTGAAATACCTTTG
1 GTTTGTAAAATTACTGAAATACCATTG
66861974 GTTTGTA
1 GTTTGTA
66861981 GATTTACCAA
Statistics
Matches: 115, Mismatches: 23, Indels: 10
0.78 0.16 0.07
Matches are distributed among these distances:
26 21 0.18
27 67 0.58
28 8 0.07
29 19 0.17
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (27 bp):
GTTTGTAAAATTACTGAAATACCATTG
Found at i:66862052 original size:27 final size:26
Alignment explanation
Indices: 66862018--66862095 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
66862008 AAATGACTAA
*
66862018 AATACCCCTAATATGTAAAATGACCGT
1 AATACCCCT-GTATGTAAAATGACCGT
* *
66862045 AA-AGCCCCTGTAAGGTAAAGTGACCGT
1 AATA-CCCCTGT-ATGTAAAATGACCGT
66862072 AATACCCCTGTATGATAAAATGAC
1 AATACCCCTGTATG-TAAAATGAC
66862096 GAATATGCCC
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
26 4 0.10
27 37 0.88
28 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (26 bp):
AATACCCCTGTATGTAAAATGACCGT
Found at i:66862945 original size:25 final size:25
Alignment explanation
Indices: 66862904--66862973 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
66862894 AGGAAGTGCT
* *
66862904 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
66862929 AAAAGGGCTTTGTCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
66862954 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
66862974 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:66862986 original size:24 final size:24
Alignment explanation
Indices: 66862903--66862998 Score: 86
Period size: 25 Copynumber: 3.9 Consensus size: 24
66862893 GAGGAAGTGC
*
66862903 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* * *
66862928 GAAAAGGGCTTTGTCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
66862952 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
66862976 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
66862999 ATATGATAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
23 5 0.09
24 11 0.19
25 41 0.71
26 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:66874292 original size:37 final size:37
Alignment explanation
Indices: 66874233--66874338 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
66874223 AGCTCAGACG
* *
66874233 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
66874270 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
66874307 TAATCTCCACACGTAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
66874339 AGAATATATT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:66874684 original size:47 final size:47
Alignment explanation
Indices: 66874548--66874694 Score: 195
Period size: 47 Copynumber: 3.1 Consensus size: 47
66874538 CATACATATT
* * * * *
66874548 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCAAACTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
66874595 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
66874642 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
66874689 TCACAT
1 TCACAT
66874695 ACAATCCTAA
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 87 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:66877781 original size:24 final size:24
Alignment explanation
Indices: 66877754--66877805 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
66877744 TCATTACTGA
*
66877754 TTTCGCATTGAACTATAAAATCAT
1 TTTCGCATCGAACTATAAAATCAT
**
66877778 TTTCTTATCGAACTATAAAATCAT
1 TTTCGCATCGAACTATAAAATCAT
66877802 TTTC
1 TTTC
66877806 TTATCTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.17, G:0.06, T:0.42
Consensus pattern (24 bp):
TTTCGCATCGAACTATAAAATCAT
Found at i:66877806 original size:24 final size:24
Alignment explanation
Indices: 66877763--66877810 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
66877753 ATTTCGCATT
66877763 GAACTATAAAATCATTTTCTTATC
1 GAACTATAAAATCATTTTCTTATC
66877787 GAACTATAAAATCATTTTCTTATC
1 GAACTATAAAATCATTTTCTTATC
66877811 TTAAAACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.04, T:0.42
Consensus pattern (24 bp):
GAACTATAAAATCATTTTCTTATC
Found at i:66878969 original size:40 final size:40
Alignment explanation
Indices: 66878937--66879328 Score: 624
Period size: 40 Copynumber: 9.8 Consensus size: 40
66878927 CCAGCATGAT
* * * * *
66878937 TGCTCTTCGGGACCTAGCCTGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
66878977 TGCTCTTCAGGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTC-GGGACTTAGCCCGGATACATCACTAGCACGAA
*
66879017 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66879057 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66879097 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66879137 TGCTCTTCGGGACTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66879177 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66879217 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66879257 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66879297 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
66879329 CTCAATTCTC
Statistics
Matches: 332, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.01
40 327 0.98
41 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:66880654 original size:37 final size:37
Alignment explanation
Indices: 66880595--66880703 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
66880585 AGCTCAGACG
* *
66880595 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
66880632 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
66880669 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
66880704 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:66880962 original size:47 final size:47
Alignment explanation
Indices: 66880910--66881056 Score: 204
Period size: 47 Copynumber: 3.1 Consensus size: 47
66880900 CATACATATT
* * * *
66880910 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
66880957 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
66881004 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
66881051 TCACAT
1 TCACAT
66881057 ACAATCCTAA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 88 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:66888392 original size:15 final size:15
Alignment explanation
Indices: 66888372--66888407 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
66888362 TGTTTATAAA
66888372 AAGTAAAAATTAACT
1 AAGTAAAAATTAACT
66888387 AAGT--AAATTAACT
1 AAGTAAAAATTAACT
66888400 AAG-AAAAA
1 AAGTAAAAA
66888408 CAAAAAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
13 12 0.63
14 3 0.16
15 4 0.21
ACGTcount: A:0.64, C:0.06, G:0.08, T:0.22
Consensus pattern (15 bp):
AAGTAAAAATTAACT
Found at i:66890242 original size:36 final size:36
Alignment explanation
Indices: 66890195--66890267 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
66890185 ATTGTTCGAA
*
66890195 TTATTCTCAATTATTATCATGATAGTAAGAATAGAC
1 TTATTCTCAATTATTATCATGATAGCAAGAATAGAC
66890231 TTATTCTCAATTATTATCATGATAGCAAGAATAGAC
1 TTATTCTCAATTATTATCATGATAGCAAGAATAGAC
66890267 T
1 T
66890268 GAACGCTTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.38
Consensus pattern (36 bp):
TTATTCTCAATTATTATCATGATAGCAAGAATAGAC
Found at i:66895496 original size:23 final size:23
Alignment explanation
Indices: 66895470--66895515 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
66895460 CAGTGTAGCG
66895470 ACTAATAGTAACGCA-ACAAAGCT
1 ACTAATAGTAACGCAGA-AAAGCT
*
66895493 ACTAATTGTAACGCAGAAAAGCT
1 ACTAATAGTAACGCAGAAAAGCT
66895516 GCTAGTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.46, C:0.20, G:0.15, T:0.20
Consensus pattern (23 bp):
ACTAATAGTAACGCAGAAAAGCT
Found at i:66896167 original size:27 final size:27
Alignment explanation
Indices: 66896137--66896188 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
66896127 TTACCTTAAA
66896137 GGGGTAATTCGGTAATTTTACAAACTG
1 GGGGTAATTCGGTAATTTTACAAACTG
* * *
66896164 GGGGTATTTTGGTACTTTTACAAAC
1 GGGGTAATTCGGTAATTTTACAAAC
66896189 CAGGGTCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.37
Consensus pattern (27 bp):
GGGGTAATTCGGTAATTTTACAAACTG
Found at i:66901505 original size:43 final size:42
Alignment explanation
Indices: 66901418--66901529 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
66901408 TGAGATTACG
* * *
66901418 TGTAAGACCATCTCTGGGATATGGCATCAATCTGAGGATTCA
1 TGTAAGACCATATCTGGGATATGGCATCAATATGAGGATCCA
* * *
66901460 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGA-GATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCAATATGAGGAT-CCA
*
66901503 TGTAAGACTATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
66901530 TGGTATAGTA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCAATATGAGGATCCA
Found at i:66902510 original size:13 final size:13
Alignment explanation
Indices: 66902492--66902526 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
66902482 CCTCAGGCAC
66902492 GGGCGTGTGCCCT
1 GGGCGTGTGCCCT
66902505 GGGCGTGTGCCCT
1 GGGCGTGTGCCCT
66902518 GGGCGTGTG
1 GGGCGTGTG
66902527 AAGTCTGCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.00, C:0.26, G:0.51, T:0.23
Consensus pattern (13 bp):
GGGCGTGTGCCCT
Found at i:66910960 original size:14 final size:14
Alignment explanation
Indices: 66910938--66910975 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
66910928 TTAGAAACCA
*
66910938 CTAATGTGACAGCC
1 CTAAAGTGACAGCC
66910952 CTAAAGTGACAGCC
1 CTAAAGTGACAGCC
66910966 CTAAAGTGAC
1 CTAAAGTGAC
66910976 CCTAGTCGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.18
Consensus pattern (14 bp):
CTAAAGTGACAGCC
Found at i:66912755 original size:40 final size:41
Alignment explanation
Indices: 66912696--66912847 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
66912686 CATTTGAATG
* * *
66912696 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
66912736 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
66912776 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
66912816 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
66912848 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:66912859 original size:80 final size:80
Alignment explanation
Indices: 66912696--66912867 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
66912686 CATTTGAATG
* * * * *
66912696 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
66912761 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
66912776 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
66912840 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
66912856 ATATCC-GGCTAA
1 ATATCCGGGCTAA
66912868 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 71 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:66920819 original size:40 final size:40
Alignment explanation
Indices: 66920768--66921079 Score: 446
Period size: 40 Copynumber: 7.8 Consensus size: 40
66920758 CATTTGAATG
* * * * *
66920768 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTA-ATGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* *
66920808 TTATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
66920848 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
66920888 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
66920928 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
66920968 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
66921008 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
66921048 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
66921080 TTGTGGTTAT
Statistics
Matches: 244, Mismatches: 27, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 241 0.99
41 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:66921095 original size:80 final size:80
Alignment explanation
Indices: 66920768--66921079 Score: 500
Period size: 80 Copynumber: 3.9 Consensus size: 80
66920758 CATTTGAATG
* * * * * * * * * *
66920768 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTA-ATGATTTTATCCGGGCTAATACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
*
66920832 ATTTGTGCGAGTTGAT
65 AATTGTGCGAGTTGAT
66920848 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
66920913 ATTGTGCGAGTTGAT
66 ATTGTGCGAGTTGAT
66920928 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
*
66920993 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTTGAT
66921008 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
66921073 ATTGTGC
66 ATTGTGC
66921080 TTGTGGTTAT
Statistics
Matches: 218, Mismatches: 13, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
80 216 0.99
81 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
ATTGTGCGAGTTGAT
Found at i:66923777 original size:24 final size:24
Alignment explanation
Indices: 66923724--66923769 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
66923714 GGTTTTGGAA
* * *
66923724 GAAGTTACGAGAAGCTTTGGGTAC
1 GAAGCTACAAGAAGCTTTAGGTAC
66923748 GAAGCTACAAGAAGCTTTAGGT
1 GAAGCTACAAGAAGCTTTAGGT
66923770 GTGAAGCTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.24
Consensus pattern (24 bp):
GAAGCTACAAGAAGCTTTAGGTAC
Found at i:66925838 original size:42 final size:42
Alignment explanation
Indices: 66925791--66925955 Score: 177
Period size: 42 Copynumber: 3.9 Consensus size: 42
66925781 ATTAAGGTTA
*
66925791 ATGAGACTACGTGTAAGACCATATTTAGGATATGGCATCAAT
1 ATGAGACTACGTGTAAGACCATATCTAGGATATGGCATCAAT
* * *
66925833 ATGAGACTACGCGTAAGACCATATCTGGGATATGGCATCGAT
1 ATGAGACTACGTGTAAGACCATATCTAGGATATGGCATCAAT
* * * * * * *
66925875 ATGAGACTTCGTGTAAGACCATAGCTGGGCTATTTGCTTCGAT
1 ATGAGACTACGTGTAAGACCATATCTAGGATA-TGGCATCAAT
* * * * *
66925918 ACGAGATTACATATAAGACCATATCTGGGATATGGCAT
1 ATGAGACTACGTGTAAGACCATATCTAGGATATGGCAT
66925956 TGGTACGGTA
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 70 0.68
43 33 0.32
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (42 bp):
ATGAGACTACGTGTAAGACCATATCTAGGATATGGCATCAAT
Found at i:66934670 original size:12 final size:12
Alignment explanation
Indices: 66934653--66934704 Score: 68
Period size: 12 Copynumber: 4.3 Consensus size: 12
66934643 ATGTTTTGTT
*
66934653 ACACGGCCTGCC
1 ACACGGCCGGCC
*
66934665 ACACGGGCGGCC
1 ACACGGCCGGCC
*
66934677 ACACGGCCTGCC
1 ACACGGCCGGCC
*
66934689 ACACGGGCGGCC
1 ACACGGCCGGCC
66934701 ACAC
1 ACAC
66934705 CCCCGTGTGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.19, C:0.46, G:0.31, T:0.04
Consensus pattern (12 bp):
ACACGGCCGGCC
Found at i:66934680 original size:24 final size:24
Alignment explanation
Indices: 66934653--66934704 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
66934643 ATGTTTTGTT
66934653 ACACGGCCTGCCACACGGGCGGCC
1 ACACGGCCTGCCACACGGGCGGCC
66934677 ACACGGCCTGCCACACGGGCGGCC
1 ACACGGCCTGCCACACGGGCGGCC
66934701 ACAC
1 ACAC
66934705 CCCCGTGTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.19, C:0.46, G:0.31, T:0.04
Consensus pattern (24 bp):
ACACGGCCTGCCACACGGGCGGCC
Found at i:66939812 original size:60 final size:59
Alignment explanation
Indices: 66939687--66939823 Score: 143
Period size: 60 Copynumber: 2.3 Consensus size: 59
66939677 CAGGGTTAAC
* *
66939687 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAA
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATAA
* * * * *
66939748 TGGGCCTAGCCAATATCAGTGTCAATCTGGGCCGTAGCCCTATTACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATAA
*
66939808 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
66939824 TAACACAGTT
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
59 4 0.06
60 49 0.77
61 11 0.17
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATAA
Found at i:66939841 original size:20 final size:20
Alignment explanation
Indices: 66939816--66939861 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
66939806 ATTGGGCCTT
66939816 GCCCATATT-AACACAGTTG
1 GCCCATATTCAACACAGTTG
*
66939835 AGCCCAT-TTCAATACAGTTG
1 -GCCCATATTCAACACAGTTG
66939855 GCCCATA
1 GCCCATA
66939862 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:66939870 original size:19 final size:20
Alignment explanation
Indices: 66939828--66939871 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
66939818 CCATATTAAC
** *
66939828 ACAGTTGAGCCCATTTCAAT
1 ACAGTTGAGCCCATAACAAA
66939848 ACAGTTG-GCCCATAACAAA
1 ACAGTTGAGCCCATAACAAA
66939867 ACAGT
1 ACAGT
66939872 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (20 bp):
ACAGTTGAGCCCATAACAAA
Found at i:66956096 original size:18 final size:18
Alignment explanation
Indices: 66956073--66956107 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
66956063 TGGCCTAATT
66956073 TAGTAACAGTAAACAGTG
1 TAGTAACAGTAAACAGTG
66956091 TAGTAACAGTAAACAGT
1 TAGTAACAGTAAACAGT
66956108 ATGCAAGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.23
Consensus pattern (18 bp):
TAGTAACAGTAAACAGTG
Found at i:66956456 original size:27 final size:27
Alignment explanation
Indices: 66956420--66956688 Score: 324
Period size: 27 Copynumber: 10.0 Consensus size: 27
66956410 AAACATACAT
* * *
66956420 CACACAAGGGTAAAACAGTCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
66956447 CATAAAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
66956474 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
66956501 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
66956528 CTCATAAGGGAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* **
66956555 CTCATAAGGGCAAAACAACCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
66956582 CCCACAAGGGCAAAACAGGCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
66956609 CCCATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
**
66956636 CTTATAAGGGCAAAACAGGT-ATTTTAC
1 CACATAAGGGCAAAACA-GTCATTTTAC
* * *
66956663 CCCATAAGGGCAAAATAGTTATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
66956689 TCGATTAAGG
Statistics
Matches: 214, Mismatches: 26, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 210 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.23
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:66960519 original size:27 final size:27
Alignment explanation
Indices: 66960481--66960637 Score: 147
Period size: 27 Copynumber: 5.9 Consensus size: 27
66960471 CATACATCAC
* * * *
66960481 ATAAGGGTAAAATAATCATCTTACCAT
1 ATAAGGGCAAAACAGTCATTTTACCAT
* * *
66960508 AAAAGGGCAAAACAGTTATTTTACCAC
1 ATAAGGGCAAAACAGTCATTTTACCAT
*
66960535 ATAAGGGCAAAACAATCATTTTACC-T
1 ATAAGGGCAAAACAGTCATTTTACCAT
* *
66960561 CAT-AGGGGAAAACAGTCATTTTACCTT
1 -ATAAGGGCAAAACAGTCATTTTACCAT
* * *
66960588 ATAAGGGCAAAATAGCCATTTTACCCT
1 ATAAGGGCAAAACAGTCATTTTACCAT
* * *
66960615 ATAAGGGAAAAATAGTTATTTTA
1 ATAAGGGCAAAACAGTCATTTTA
66960638 TCGATTAAGG
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 22 0.21
27 85 0.79
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (27 bp):
ATAAGGGCAAAACAGTCATTTTACCAT
Found at i:66960592 original size:53 final size:53
Alignment explanation
Indices: 66960478--66960625 Score: 163
Period size: 53 Copynumber: 2.8 Consensus size: 53
66960468 AAACATACAT
* * * * * *
66960478 CACATAAGGGTAAAATAATCATCTTACCATAAAAGGGCAAAACAGTTATTTTAC
1 CACATAAGGGCAAAATAATCATTTTACC-TCATAGGGGAAAACAGTCATTTTAC
*
66960532 CACATAAGGGCAAAACAATCATTTTACCTCATAGGGGAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAATCATTTTACCTCATAGGGGAAAACAGTCATTTTAC
** ** *
66960585 CTTATAAGGGCAAAATAGCCATTTTACC-CTATAAGGGAAAA
1 CACATAAGGGCAAAATAATCATTTTACCTC-ATAGGGGAAAA
66960626 ATAGTTATTT
Statistics
Matches: 80, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
52 1 0.01
53 54 0.68
54 25 0.31
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (53 bp):
CACATAAGGGCAAAATAATCATTTTACCTCATAGGGGAAAACAGTCATTTTAC
Found at i:66975328 original size:23 final size:23
Alignment explanation
Indices: 66975296--66975341 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
66975286 ATTTGTGTAT
66975296 TTGTGGCTTGAGACTAGCACTAA
1 TTGTGGCTTGAGACTAGCACTAA
*
66975319 TTGTGTCTTGAGACTAGCACTAA
1 TTGTGGCTTGAGACTAGCACTAA
66975342 CGGTTATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (23 bp):
TTGTGGCTTGAGACTAGCACTAA
Found at i:66985183 original size:40 final size:40
Alignment explanation
Indices: 66985093--66985342 Score: 267
Period size: 40 Copynumber: 6.3 Consensus size: 40
66985083 ACCCAATTAT
* *** * *
66985093 CTTCGGGATTTAG-CCGGATATAACCACTCCCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * * * *
66985131 CGTCGGGTCTTAGCCCAGATATGGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
*
66985171 CTTCGGGACTTAGGCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
*
66985211 CTTCCGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
*
66985251 CTTCGGGACTTAGCCCGGA-ATTATTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
* * * *
66985291 CTTCGGGACTTAGCCCGGA-ATTAATCACTAGCACAAATGT
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
66985331 CTTCGGGACTTA
1 CTTCGGGACTTA
66985343 ACCCCGTTAG
Statistics
Matches: 184, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
38 10 0.05
39 15 0.08
40 159 0.86
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:66993280 original size:40 final size:40
Alignment explanation
Indices: 66993207--66993431 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
66993197 GGATATAACC
* * * * *
66993207 ACTCGCAC-AAGGCCGTCGGGTCTTAGCCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
66993246 ACTAGCACAAATGCCTTCGGGACTTAGCCTGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
*
66993286 ACTCGCACAAATGGCTTCGGGACTTAGCCCGGA-ATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
* * *
66993326 ACTCGCACAAATGCCTTCGGAACTTAGCCC-GAAATTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
* * *
66993366 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGA-ATTAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
* *
66993406 ACTAGCACAAATGTCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
66993432 ACCCCGTTAG
Statistics
Matches: 164, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 10 0.06
40 152 0.93
41 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:66993334 original size:80 final size:80
Alignment explanation
Indices: 66993207--66993431 Score: 285
Period size: 80 Copynumber: 2.8 Consensus size: 80
66993197 GGATATAACC
* * * *
66993207 ACTCGCAC-AAGGCCGTCGGGTCTTAGCCCGG-ATATGGTCACTAGCACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCACAAATGCCTTCGGGACT
* *
66993270 TAGCCTG-GATATAGTA
65 TAGCCCGAAAT-TAGTA
* * * *
66993286 ACTCGCACAAATGGCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGAACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTT
*
66993351 AGCCCGAAATTATTA
66 AGCCCGAAATTAGTA
* * *
66993366 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAATCACTAGCACAAATGTCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTT
66993431 A
66 A
66993432 ACCCCGTTAG
Statistics
Matches: 125, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
79 8 0.06
80 113 0.90
81 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTT
AGCCCGAAATTAGTA
Found at i:66996443 original size:40 final size:40
Alignment explanation
Indices: 66996247--66996433 Score: 284
Period size: 40 Copynumber: 4.7 Consensus size: 40
66996237 CAATTGATGA
* * *
66996247 TTATATTCGGGTTAAGTCCCGAAGGCATTCGTGCTAGTTA
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
66996287 TTATATCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
66996327 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * * *
66996367 TTATATCCGGGATAAGTCCCAAAGGCATTCTTGTTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
66996407 TTATATCCGGGCTAAATCCCGAAGGCA
1 TTATATCCGGGTTAAGTCCCGAAGGCA
66996434 ATTGGGTTGG
Statistics
Matches: 135, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 135 1.00
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (40 bp):
TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:66999411 original size:46 final size:46
Alignment explanation
Indices: 66999361--66999529 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
66999351 TGAGCATCCA
* *
66999361 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
* * * *
66999407 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCCG
* * *
66999454 AACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
* *
66999500 AGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
66999530 GGGGTGGGTT
Statistics
Matches: 101, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 56 0.55
47 28 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
Found at i:66999513 original size:93 final size:93
Alignment explanation
Indices: 66999354--66999524 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
66999344 GGATGGTTGA
* * * *
66999354 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
66999419 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
66999447 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
66999512 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
66999525 ACTTAGGGGT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67000069 original size:40 final size:40
Alignment explanation
Indices: 67000024--67000205 Score: 283
Period size: 40 Copynumber: 4.5 Consensus size: 40
67000014 ATACCTATTT
* *
67000024 TCCGGGTTAAGTCCCAAAGGCATTCGTGCTAGTTGTTATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATA
* *
67000064 TCCGGGTTAAGTTCCAAAGGCATTCGTGCTGGTTGTTATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATA
*
67000104 TCCGGGTTAAGTCCCGATGGCATTCGTGCTGGTTGTTATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATA
*
67000144 TCCGGGATAAGTCCCGAAGGCATTCGTGCTGGTTGTTATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATA
* * *
67000184 TCCGAGCTAAATCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
67000206 ATTGGGTTAG
Statistics
Matches: 132, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATA
Found at i:67002931 original size:19 final size:19
Alignment explanation
Indices: 67002907--67002952 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
67002897 GAAGCACATC
67002907 CTGGCACACAAAAAGCATA
1 CTGGCACACAAAAAGCATA
* **
67002926 CTGGCAGACAAAGTGCATA
1 CTGGCACACAAAAAGCATA
*
67002945 TTGGCACA
1 CTGGCACA
67002953 TGAAGTGCAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (19 bp):
CTGGCACACAAAAAGCATA
Found at i:67013838 original size:30 final size:30
Alignment explanation
Indices: 67013779--67013838 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
67013769 AAAATAAGAG
* **
67013779 TTAGTGGCAAAATTTAATAAAATTTAAATT
1 TTAGTGGCAAAATTCAATAAAATAAAAATT
* *
67013809 TTAGTGGTAAAATTCAATAACATAAAAATT
1 TTAGTGGCAAAATTCAATAAAATAAAAATT
67013839 AAGTTACAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.37
Consensus pattern (30 bp):
TTAGTGGCAAAATTCAATAAAATAAAAATT
Found at i:67014007 original size:59 final size:56
Alignment explanation
Indices: 67013942--67014127 Score: 144
Period size: 59 Copynumber: 3.1 Consensus size: 56
67013932 ATGATAAATT
*
67013942 ATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 ATATATTTTTATTAA--TATATTTAATAATAATTAT-TTAAATTATATTTTATAGTATC
* * * * * *
67014001 ATATATTATGATT-TTAAAAAATTCATATAAGAA-TATTTAATATTAAGAATTTTATTA-AATC
1 ATATATT-T--TTATTAATATATTTA-ATAATAATTATTTAA-ATT-A-TATTTTA-TAGTATC
* *
67014062 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTTATT--AATATATTTAATAATAATTATTT-AAATTATATTTTATAGTATC
67014121 ATATATT
1 ATATATT
67014128 ATGATTTGAG
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
58 7 0.07
59 36 0.37
60 15 0.15
61 34 0.35
62 6 0.06
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (56 bp):
ATATATTTTTATTAATATATTTAATAATAATTATTTAAATTATATTTTATAGTATC
Found at i:67014053 original size:61 final size:61
Alignment explanation
Indices: 67013988--67014175 Score: 165
Period size: 61 Copynumber: 3.1 Consensus size: 61
67013978 GTTAAATTAT
*
67013988 ATTTTATAGTATTATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGA
1 ATTTTATAGTATCATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGA
* * * * * *
67014049 ATTTTATTA-AATCATATATT-TTA-ATTAAAATATATTTAATATTA-ATTATTTCAA-ATT-A-
1 ATTTTA-TAGTATCATATATTATGATTTTAAAA-A-A-TTCATATAAGAATATTT-AATATTAAG
*
67014107 T
61 A
* ** * *
67014108 ATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGA
1 ATTTTATAGTATCATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGA
67014169 ATTTTAT
1 ATTTTAT
67014176 TATAAATTAT
Statistics
Matches: 95, Mismatches: 20, Indels: 24
0.68 0.14 0.17
Matches are distributed among these distances:
58 10 0.11
59 31 0.33
60 8 0.08
61 35 0.37
62 11 0.12
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (61 bp):
ATTTTATAGTATCATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGA
Found at i:67014149 original size:120 final size:122
Alignment explanation
Indices: 67013935--67014225 Score: 453
Period size: 120 Copynumber: 2.4 Consensus size: 122
67013925 TAGTATGATG
* **
67013935 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
67014000 TATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 CATATATTATGATTTGAAAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
67014056 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
** *
67014119 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TCATATATTATGATTTGAAAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
67014177 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
67014226 ATATGATTAA
Statistics
Matches: 153, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
119 2 0.01
120 105 0.69
121 1 0.01
122 43 0.28
123 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAAAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:67014204 original size:18 final size:19
Alignment explanation
Indices: 67014169--67014205 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
67014159 ATTATTAAGA
67014169 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
67014188 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
67014206 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:67014435 original size:44 final size:45
Alignment explanation
Indices: 67014370--67014460 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
67014360 ACCTCTATTC
* * *
67014370 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
67014414 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
67014459 CA
1 CA
67014461 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:67014462 original size:16 final size:16
Alignment explanation
Indices: 67014441--67014509 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
67014431 GATTAGCTAT
67014441 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
67014457 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
67014474 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
67014490 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
67014506 TACA
1 TACA
67014510 GCGAACCAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
16 35 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:67014483 original size:33 final size:32
Alignment explanation
Indices: 67014441--67014509 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
67014431 GATTAGCTAT
67014441 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
67014474 TACACCTCTAATCCAATACATCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
67014506 TACA
1 TACA
67014510 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:67015911 original size:48 final size:49
Alignment explanation
Indices: 67015815--67015948 Score: 130
Period size: 48 Copynumber: 2.8 Consensus size: 49
67015805 AACAAGTTTG
* * * *
67015815 CACACATAGTGCCATTCTACA-CCGCACACATAGTGCC-TTGAAGATTCA
1 CACACATAGTGACATTC-AAATCAGCACACATAGTGCCATTCAAGATTCA
* ** * *
67015863 CTCATGTATTGACATTCAAATCAGCACACATAGTGCCATTCAA-TTTCA
1 CACACATAGTGACATTCAAATCAGCACACATAGTGCCATTCAAGATTCA
* * *
67015911 CACACATAGTGCCATTCAAATCCGCACACTTAGTGCCA
1 CACACATAGTGACATTCAAATCAGCACACATAGTGCCA
67015949 ATGTTGACCC
Statistics
Matches: 68, Mismatches: 16, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
47 2 0.03
48 62 0.91
49 4 0.06
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (49 bp):
CACACATAGTGACATTCAAATCAGCACACATAGTGCCATTCAAGATTCA
Found at i:67015914 original size:24 final size:24
Alignment explanation
Indices: 67015815--67015948 Score: 103
Period size: 24 Copynumber: 5.6 Consensus size: 24
67015805 AACAAGTTTG
* *
67015815 CACACATAGTGCCATTCTACA-CCG
1 CACACATAGTGCCATTC-AAATCCA
* *
67015839 CACACATAGTGCC-TTGAAGATTCA
1 CACACATAGTGCCATTCAA-ATCCA
* ** * *
67015863 CTCATGTATTGACATTCAAAT-CA
1 CACACATAGTGCCATTCAAATCCA
* *
67015886 GCACACATAGTGCCATTCAATTTCA
1 -CACACATAGTGCCATTCAAATCCA
*
67015911 CACACATAGTGCCATTCAAATCCG
1 CACACATAGTGCCATTCAAATCCA
*
67015935 CACACTTAGTGCCA
1 CACACATAGTGCCA
67015949 ATGTTGACCC
Statistics
Matches: 85, Mismatches: 20, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
22 1 0.01
23 5 0.06
24 73 0.86
25 6 0.07
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (24 bp):
CACACATAGTGCCATTCAAATCCA
Found at i:67025235 original size:30 final size:30
Alignment explanation
Indices: 67025199--67025268 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
67025189 GTGTGTCTAG
* *
67025199 CTGTGTGTGTCACACCACCAAGTCACACGT
1 CTGTGTGTCTCACACCACCAAGTCACACGC
* **
67025229 CTGTGTGTCTTACACTGCCAAGTCACACGC
1 CTGTGTGTCTCACACCACCAAGTCACACGC
*
67025259 CCGTGTGTCT
1 CTGTGTGTCT
67025269 GGCTGTGTGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.19, C:0.33, G:0.21, T:0.27
Consensus pattern (30 bp):
CTGTGTGTCTCACACCACCAAGTCACACGC
Found at i:67030223 original size:24 final size:24
Alignment explanation
Indices: 67030211--67030302 Score: 148
Period size: 24 Copynumber: 3.8 Consensus size: 24
67030201 TTGACATTCC
67030211 AATCCGCACACATAGTGCCATACA
1 AATCCGCACACATAGTGCCATACA
67030235 AATCCGCACACATAGTGCCATACA
1 AATCCGCACACATAGTGCCATACA
* *
67030259 AATTCGCACACATAGTGCCATTCA
1 AATCCGCACACATAGTGCCATACA
* *
67030283 AATTCGCACACATAATGCCA
1 AATCCGCACACATAGTGCCA
67030303 AAATCATTTC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.37, C:0.32, G:0.12, T:0.20
Consensus pattern (24 bp):
AATCCGCACACATAGTGCCATACA
Found at i:67030248 original size:48 final size:48
Alignment explanation
Indices: 67030196--67030296 Score: 139
Period size: 48 Copynumber: 2.1 Consensus size: 48
67030186 TAATTCACAT
* * *
67030196 ACATATTGACATTCCAATCCGCACACATAGTGCCATACAAATCCGCAC
1 ACATAGTGACATACAAATCCGCACACATAGTGCCATACAAATCCGCAC
* * * *
67030244 ACATAGTGCCATACAAATTCGCACACATAGTGCCATTCAAATTCGCAC
1 ACATAGTGACATACAAATCCGCACACATAGTGCCATACAAATCCGCAC
67030292 ACATA
1 ACATA
67030297 ATGCCAAAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.37, C:0.31, G:0.11, T:0.22
Consensus pattern (48 bp):
ACATAGTGACATACAAATCCGCACACATAGTGCCATACAAATCCGCAC
Found at i:67031507 original size:17 final size:17
Alignment explanation
Indices: 67031475--67031508 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
67031465 CCCCACTTAA
* *
67031475 TATATTATAGCTTATTT
1 TATATTATAACATATTT
67031492 TATATTATAACATATTT
1 TATATTATAACATATTT
67031509 CAATTATATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:67036340 original size:39 final size:39
Alignment explanation
Indices: 67036136--67036358 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
67036126 TTGAATGCTG
* * * * * *
67036136 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
67036176 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
67036216 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
67036256 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
67036296 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
67036335 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67036359 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 38 0.25
40 106 0.69
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:67036378 original size:79 final size:80
Alignment explanation
Indices: 67036216--67036393 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
67036206 AGATACAAGT
* * * *
67036216 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
67036281 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
67036296 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
67036360 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
67036375 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
67036394 TATGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:67044286 original size:39 final size:39
Alignment explanation
Indices: 67044082--67044304 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
67044072 TTGAATGCTG
* * * * * *
67044082 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
67044122 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
67044162 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
67044202 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
67044242 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
67044281 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67044305 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 38 0.25
40 106 0.69
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:67044324 original size:79 final size:80
Alignment explanation
Indices: 67044162--67044339 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
67044152 AGATACAAGT
* * * *
67044162 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
67044227 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
67044242 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
67044306 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
67044321 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
67044340 TATGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:67051294 original size:41 final size:44
Alignment explanation
Indices: 67051185--67051340 Score: 146
Period size: 41 Copynumber: 3.6 Consensus size: 44
67051175 ATATTGTACA
* * * *
67051185 ATGCCAACATCCCAGACGTGGTCTTACATGCTATCTC-ATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGCAATCACAATATCG
* *
67051228 ATGCC-GCTGTCCCAGATA-GGATCTTACATG-AATC-CAATAT-G
1 ATGCCAAC-GTCCCAGACATGG-TCTTACATGCAATCACAATATCG
* * * *
67051269 ATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGCAATCACA-ATATCG
67051314 ATGCCAACGTCCC-GACATGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
67051341 CGAAAACACA
Statistics
Matches: 93, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
41 24 0.26
42 15 0.16
43 23 0.25
44 18 0.19
45 13 0.14
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGCAATCACAATATCG
Found at i:67051339 original size:44 final size:44
Alignment explanation
Indices: 67051264--67051354 Score: 139
Period size: 44 Copynumber: 2.1 Consensus size: 44
67051254 CATGAATCCA
* * *
67051264 ATATGATGCCAATGTCCCAGACATGGTCTTACACGTAACCACAT
1 ATATGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACAT
67051308 ATATCGATGCCAACGTCCC-GACATGGTCTTACACGAAAACACAT
1 ATAT-GATGCCAACGTCCCAGACATGGTCTTACACGAAAACACAT
67051352 ATA
1 ATA
67051355 AAAAATCCTA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 30 0.70
45 13 0.30
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.23
Consensus pattern (44 bp):
ATATGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACAT
Found at i:67058860 original size:32 final size:32
Alignment explanation
Indices: 67058823--67058919 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
67058813 AATGCTTATC
67058823 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
67058855 ATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
67058887 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
67058919 A
1 A
67058920 AATGCATACA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:67065051 original size:31 final size:31
Alignment explanation
Indices: 67065010--67065073 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
67065000 CCTTTTCATA
*
67065010 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
** *
67065041 TTTCAAATTTCATATTACTGGGCCGAATCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
67065072 TT
1 TT
67065074 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:67065320 original size:24 final size:24
Alignment explanation
Indices: 67065267--67065436 Score: 211
Period size: 25 Copynumber: 7.0 Consensus size: 24
67065257 GCTTTATCAT
*
67065267 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTC
* *
67065291 AGTAACTGGGGCAGAAGCCCTTTTT
1 A-TAACTGGGGCATAAGCCCTTTTC
67065316 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
* *
67065341 ATAACTGGCGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTC
67065366 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
*
67065391 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTC
67065414 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67065437 GCACTTCCTC
Statistics
Matches: 130, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
23 20 0.15
24 34 0.26
25 76 0.58
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTC
Found at i:67065508 original size:9 final size:9
Alignment explanation
Indices: 67065494--67065550 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
67065484 ATCTCATATG
67065494 CATATCATA
1 CATATCATA
*
67065503 CATATCATGTG
1 CATATCA--TA
67065514 CATATCATA
1 CATATCATA
* *
67065523 CATGTCATGTG
1 CATATCA--TA
67065534 CATATCATA
1 CATATCATA
67065543 CATATCAT
1 CATATCAT
67065551 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:67065510 original size:20 final size:20
Alignment explanation
Indices: 67065482--67065552 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
67065472 GCATTTATAA
* *
67065482 ACATCTCATATGCATATCAT
1 ACATATCATGTGCATATCAT
67065502 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
67065522 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
67065542 ACATATCATGT
1 ACATATCATGT
67065553 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:67066886 original size:27 final size:27
Alignment explanation
Indices: 67066786--67066869 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
67066776 TGGCATATTC
* * *
67066786 GTCATTTTACCATATAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
67066813 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
67066840 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
67066867 GTC
1 GTC
67066870 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:67067034 original size:27 final size:27
Alignment explanation
Indices: 67066909--67067160 Score: 152
Period size: 27 Copynumber: 9.3 Consensus size: 27
67066899 TTCATCCTAT
* * * *
67066909 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
* ** ** *
67066936 AAAGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
* * *
67066963 AATGGTATTTCT-ATAATTTTTATAAAGTC
1 AAGGGTATTT-TGGTAA-TTTTACAAA-TC
* * **
67066992 TAGGGTATTTCT-GTAACTTTGTAAATC
1 AAGGGTATTT-TGGTAATTTTACAAATC
* * *
67067019 AGGGGTATTTTGGTAATTTCACAAATT
1 AAGGGTATTTTGGTAATTTTACAAATC
* * *
67067046 GAGGGTATTTCGGTAATTTCACAAA-C
1 AAGGGTATTTTGGTAATTTTACAAATC
*
67067072 TAAGGGTATTTTGGTAATTTTATAAA-C
1 -AAGGGTATTTTGGTAATTTTACAAATC
* * *
67067099 TAGGGGCATTTTGGTAATTTTACAAACC
1 -AAGGGTATTTTGGTAATTTTACAAATC
* **
67067127 AAGGGTATTTTAGTAATTTTGTAAATC
1 AAGGGTATTTTGGTAATTTTACAAATC
67067154 AAGGGTA
1 AAGGGTA
67067161 AAACAGTAAT
Statistics
Matches: 177, Mismatches: 42, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
26 1 0.01
27 146 0.82
28 16 0.09
29 14 0.08
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAATC
Found at i:67067158 original size:81 final size:81
Alignment explanation
Indices: 67066948--67067160 Score: 200
Period size: 81 Copynumber: 2.6 Consensus size: 81
67066938 AGGTATTTCA
** * *
67066948 GTAATTTTGTAAACCAATGGTATTTCTA-TAATTTTTATAAAGTCTAGGGTATTTCTGTAACTTT
1 GTAATTTTACAAACCAAGGGTATTT-TAGTAA-TTTTATAAA-TCAAGGGTATTTCTGTAACTTT
* *
67067012 GTAAATCAGGGGTATTTTG
63 ATAAATCAGGGGCATTTTG
* *** ** * * *
67067031 GTAATTTCACAAATTGAGGGTATTTCGGTAATTTCACAAA-CTAAGGGTATTT-TGGTAATTTTA
1 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATC-AAGGGTATTTCT-GTAACTTTA
67067094 TAAA-CTAGGGGCATTTTG
64 TAAATC-AGGGGCATTTTG
*
67067112 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTA
1 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCAAGGGTA
67067161 AAACAGTAAT
Statistics
Matches: 101, Mismatches: 24, Indels: 12
0.74 0.18 0.09
Matches are distributed among these distances:
80 3 0.03
81 69 0.68
82 8 0.08
83 21 0.21
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (81 bp):
GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCAAGGGTATTTCTGTAACTTTATA
AATCAGGGGCATTTTG
Found at i:67067168 original size:27 final size:27
Alignment explanation
Indices: 67067138--67067319 Score: 249
Period size: 27 Copynumber: 6.8 Consensus size: 27
67067128 AGGGTATTTT
* *
67067138 AGTAATTTTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67067165 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
67067192 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
67067219 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67067246 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
67067273 AATAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
67067300 AGTAATTATGTAAATC-AGGG
1 AGTAATTCTGTAAATCGAGGG
67067320 GTACTTTGGT
Statistics
Matches: 140, Mismatches: 15, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
26 3 0.02
27 137 0.98
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:67067170 original size:54 final size:54
Alignment explanation
Indices: 67067112--67067279 Score: 147
Period size: 54 Copynumber: 3.1 Consensus size: 54
67067102 GGGCATTTTG
* *** * *
67067112 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACA
** * * *
67067166 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACA
** * * ** * * *
67067220 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACA
1 GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACA
*
67067274 ATAATT
1 GTAATT
67067280 ATGTAAATCG
Statistics
Matches: 96, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 96 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (54 bp):
GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACA
Found at i:67067197 original size:81 final size:81
Alignment explanation
Indices: 67067112--67067322 Score: 206
Period size: 81 Copynumber: 2.6 Consensus size: 81
67067102 GGGCATTTTG
* **** *
67067112 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTA
67067177 AATCAAGGGTAAAATA
66 AATCAAGGGTAAAATA
* * * * * *
67067193 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTA
* * *
67067258 AGTCGAGGGTAAAACA
66 AATCAAGGGTAAAATA
* * ** * ** * *
67067274 ATAATTATGTAAATCGGGGGTAAAACAGTAATTATGTAAATCAGGGGTA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTA
67067323 CTTTGGTAAT
Statistics
Matches: 107, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 107 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (81 bp):
GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTA
AATCAAGGGTAAAATA
Found at i:67067342 original size:81 final size:81
Alignment explanation
Indices: 67067138--67067373 Score: 213
Period size: 81 Copynumber: 2.9 Consensus size: 81
67067128 AGGGTATTTT
* * * ** * * * * *
67067138 AGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTAT
1 AGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTACAAGTCGAGGGTAAAACAATAATTATAT
67067203 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * ** *
67067219 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACAATAATTATGT
1 AGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTACAAGTCGAGGGTAAAACAATAATTATAT
*
67067284 AAATCGGGGGTAAAAC
66 AAATCGAGGGTAAAAC
**** * * *** *
67067300 AGTAATTATGTAAATC-AGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCAATAATTTTA
1 AGTAATTATGTAAATCGA-GGGTAAAACGGTAATTCTACAAGTCGAGGGTAAAACAATAATTATA
*
67067364 CAAATCGAGG
65 TAAATCGAGG
67067374 ATATTTCAGT
Statistics
Matches: 126, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
80 1 0.01
81 125 0.99
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
AGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTACAAGTCGAGGGTAAAACAATAATTATAT
AAATCGAGGGTAAAAC
Found at i:67067349 original size:27 final size:27
Alignment explanation
Indices: 67067329--67067417 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
67067319 GGTACTTTGG
*
67067329 TAATTTTACAAGTCGAAGGTATTTCAA
1 TAATTTTACAAATCGAAGGTATTTCAA
*
67067356 TAATTTTACAAATCG-AGGATATTTCAG
1 TAATTTTACAAATCGAAGG-TATTTCAA
* * **
67067383 TATTTTTACAAA-CTAAGGGTATTTCGG
1 TAATTTTACAAATCGAA-GGTATTTCAA
67067410 TAATTTTA
1 TAATTTTA
67067418 GTAAACTAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
26 4 0.08
27 47 0.89
28 2 0.04
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATCGAAGGTATTTCAA
Found at i:67067431 original size:27 final size:27
Alignment explanation
Indices: 67067328--67067432 Score: 81
Period size: 27 Copynumber: 3.9 Consensus size: 27
67067318 GGGTACTTTG
* *
67067328 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* * *
67067355 ATAATTTTACAAATCGAGGA-TATTTCA
1 GTAATTTTACAAA-CTAAGAGTATTTCA
* * *
67067382 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
67067409 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
67067433 CTAAACAGGG
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
26 3 0.05
27 52 0.84
28 7 0.11
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:67072765 original size:55 final size:56
Alignment explanation
Indices: 67072700--67072814 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
67072690 AGCATGGCTG
* *
67072700 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* ** *
67072756 CCAGA-ACAGATATATGTGGTAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
67072811 CCAG
1 CCAG
67072815 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:67072782 original size:27 final size:28
Alignment explanation
Indices: 67072725--67072814 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
67072715 GTGACAGAGT
* *
67072725 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTATGTGGCAGGGC
*
67072754 CACCAGAACAGATA-TATGTGGTAGGGC
1 CACCAGAACAGATATTATGTGGCAGGGC
**
67072781 CACCAGAACAGATAATT-TGTGGCATAGC
1 CACCAGAACAGAT-ATTATGTGGCAGGGC
67072809 CACCAG
1 CACCAG
67072815 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 22 0.42
29 8 0.15
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATATTATGTGGCAGGGC
Found at i:67072967 original size:28 final size:28
Alignment explanation
Indices: 67072920--67073011 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
67072910 AAATTAACCC
*
67072920 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
67072948 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
67072976 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
67073004 TAGGGGTA
1 TAGGGGTA
67073012 CTCTAGTACA
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
27 1 0.02
28 61 0.98
ACGTcount: A:0.30, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:67077960 original size:9 final size:9
Alignment explanation
Indices: 67077946--67078094 Score: 103
Period size: 9 Copynumber: 16.9 Consensus size: 9
67077936 TGATATTTAT
*
67077946 TTATGTTAG
1 TTATGTAAG
*
67077955 TTATGTAAA
1 TTATGTAAG
67077964 TTATGTAAG
1 TTATGTAAG
67077973 TTATGTAAG
1 TTATGTAAG
*
67077982 TTATG-ACAT
1 TTATGTA-AG
*
67077991 TTATGATATG
1 TTATG-TAAG
* * *
67078001 ATATAT-AT
1 TTATGTAAG
67078009 TTATGT-A-
1 TTATGTAAG
67078016 TTATGTAAG
1 TTATGTAAG
*
67078025 TTATGATATG
1 TTATG-TAAG
* * *
67078035 ATATAT-AT
1 TTATGTAAG
*
67078043 TTATATAAG
1 TTATGTAAG
67078052 TTATGTAAG
1 TTATGTAAG
*
67078061 TTATGTATG
1 TTATGTAAG
*
67078070 TTATGTGAG
1 TTATGTAAG
67078079 -TATGTAAG
1 TTATGTAAG
67078087 TTATGTAA
1 TTATGTAA
67078095 TTTTAAAGAA
Statistics
Matches: 108, Mismatches: 24, Indels: 16
0.73 0.16 0.11
Matches are distributed among these distances:
7 6 0.06
8 19 0.18
9 73 0.68
10 9 0.08
11 1 0.01
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:67078029 original size:34 final size:36
Alignment explanation
Indices: 67077973--67078069 Score: 130
Period size: 34 Copynumber: 2.8 Consensus size: 36
67077963 ATTATGTAAG
* *
67077973 TTATGTAAGTTATG-ACATTTATGATATGATATATAT
1 TTATATAAGTTATGTA-AGTTATGATATGATATATAT
*
67078009 TTATGT-A-TTATGTAAGTTATGATATGATATATAT
1 TTATATAAGTTATGTAAGTTATGATATGATATATAT
67078043 TTATATAAGTTATGTAAGTTATG-TATG
1 TTATATAAGTTATGTAAGTTATGATATG
67078070 TTATGTGAGT
Statistics
Matches: 56, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
34 29 0.52
35 7 0.12
36 20 0.36
ACGTcount: A:0.35, C:0.01, G:0.15, T:0.48
Consensus pattern (36 bp):
TTATATAAGTTATGTAAGTTATGATATGATATATAT
Found at i:67080904 original size:853 final size:853
Alignment explanation
Indices: 67079258--67080964 Score: 3054
Period size: 853 Copynumber: 2.0 Consensus size: 853
67079248 CTAAATATAA
* *
67079258 TTGATCGCGTGATTTCGTGATGGGTTTTAAATATTTATAATTAATCGTTCTTGAAACTAACTATT
1 TTGATCGCGTGATTTCATGATAGGTTTTAAATATTTATAATTAATCGTTCTTGAAACTAACTATT
*
67079323 ATCACGATGCAGGCAAGTGTACCTATCGAACAGTAGTAAAGTTTTAGCAAGATCAGATTGTCGAA
66 ATCACGATGCAGGCAAGTGTACCTATCGAACAGTAGTAAAGTTTTAGCAAGACCAGATTGTCGAA
*
67079388 CCCAAAGGAACTAAAAGTACTAGTAATGACTGTCTTATTATTGTTTAGCCTAGGAATAAAGAGGT
131 CCCAAAGGAACTAAAAGTACTAGTAATGACTGTCTTATTATTGTTTAGCCTAAGAATAAAGAGGT
* *
67079453 TTTTGTTTTAACTAACTAATTATCTAAACTAAGAATTCATAGAGAATGGAATTGGGGAATTGCTT
196 TTTTGTTTTAACTAACTAATTATCTAAACTAAGAATTCACAGAAAATGGAATTGGGGAATTGCTT
67079518 TTGGGAAAATCGATTGAATTAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATT
261 TTGGGAAAATCGATTGAATTAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATT
* * *
67079583 TTGGCTCAGAATCGGACGATTTATTCATTTAACTTGTTTCGTAGAGATCCCTAAGTTATGTTATT
326 CTGGCTCAGAATCGGACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGTTATGTTACT
67079648 ATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTGAATAATTGATACCTTTCTCTAATTAA
391 ATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTGAATAATTGATACCTTTCTCTAATTAA
* * * *
67079713 CACCCTAGGGTTGCATTAGCTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATTCGGCGAA
456 CACCCTAGGGTTGCATTAACTCCATCTATGGATCCCCTTATTAGGTTTCACCCTAATTCAGCAAA
* * *
67079778 ATCTTGTCACCTTATGGGTAGGCGCGCAATCAACTCCGCTTAATTATGACAAATGTACTCTTAGA
521 ATCTTGTCACCTTATAGGTAGGCGCGCAATCAACTCCGCTTAATTATGAAAAATGTACTCTGAGA
*
67079843 CAGGGTCTATTTCTCCTCTGAATAAGAACTTATCTTGAATCAATATCCTGGGATATCAAAACAAG
586 CAGGGTCTATTTCTCCTCTGAATAAGAACTTATCTTGAATCAATATCCTGGGATATCAAAAAAAG
67079908 AATTAAGAACACATAATTAAGAACAAGTTAAATATTTATAATATAATTCAGAAAATAATAACAAG
651 AATTAAGAACACATAATTAAGAACAAGTTAAATATTTATAATATAATTCAGAAAATAATAACAAG
*
67079973 ATTCGTCTTAAGTTTCATTCCCCTTAGGTATTTAGGGGTTTTAGTTCATAACTAAATAAGAAAAC
716 ATTCATCTTAAGTTTCATTCCCCTTAGGTATTTAGGGGTTTTAGTTCATAACTAAATAAGAAAAC
*
67080038 TTCTCAAAATAATAAAGAATACAAAACATAAAGAAAACCCAAAACTCCTCAAGGAGAAATTGAGG
781 ATCTCAAAATAATAAAGAATACAAAACATAAAGAAAACCCAAAACTCCTCAAGGAGAAATTGAGG
67080103 AGAGATCT
846 AGAGATCT
67080111 TTGATCGCGTGATTTCATGATAGGTTTTAAATATTTATAATTAATCGTTCTTGAAACTAACTATT
1 TTGATCGCGTGATTTCATGATAGGTTTTAAATATTTATAATTAATCGTTCTTGAAACTAACTATT
* * * * * *
67080176 ATCACGATGTAGGCAGGTGTACCTATCGAAGATTAGTATAGTTTTAGCAAGACCGGATTGTCGAA
66 ATCACGATGCAGGCAAGTGTACCTATCGAACAGTAGTAAAGTTTTAGCAAGACCAGATTGTCGAA
* *
67080241 CCCAAGGGAACTAAAAGTACTAGTTATGACTGTCTTATTATTGTTTAGCCTAAGAATAAAGAGGT
131 CCCAAAGGAACTAAAAGTACTAGTAATGACTGTCTTATTATTGTTTAGCCTAAGAATAAAGAGGT
67080306 TTTTGTTTTAACTAACTAATTATCTAAACTAAGAATTCACAGAAAATGGAATTGGGGAATTGCTT
196 TTTTGTTTTAACTAACTAATTATCTAAACTAAGAATTCACAGAAAATGGAATTGGGGAATTGCTT
67080371 TTGGGAAAATCGATTGAATTAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATT
261 TTGGGAAAATCGATTGAATTAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATT
*
67080436 CTGGCTCCGAATCGGACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGTTATGTTACT
326 CTGGCTCAGAATCGGACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGTTATGTTACT
*
67080501 ATCCCTATTCAAGACTAATAACGTCTAATCCCTAGATTGAATAATTGATACCTTTCTCTAATTAA
391 ATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTGAATAATTGATACCTTTCTCTAATTAA
*
67080566 CACCTTAGGGTTGCATTAACTCCATCTATGGATCCCCTTATTAGGTTTCACCCTAATTCAGCAAA
456 CACCCTAGGGTTGCATTAACTCCATCTATGGATCCCCTTATTAGGTTTCACCCTAATTCAGCAAA
*
67080631 ATCTTGTCACCTTATATGTAGGCGCGCAATCAACTCCGCTTAATTATGAAAAATGTACTCTGAGA
521 ATCTTGTCACCTTATAGGTAGGCGCGCAATCAACTCCGCTTAATTATGAAAAATGTACTCTGAGA
67080696 CAGGGTCTATTTCTCCTCTGAATAAGAACTTATCTTGAATCAATATCCTGGGATATCAAAAAAAG
586 CAGGGTCTATTTCTCCTCTGAATAAGAACTTATCTTGAATCAATATCCTGGGATATCAAAAAAAG
* *
67080761 AATTAAGAACACATAATTAAGAACAAGTTAAATATTTATCATATAATTTAGAAAATAATAACAAG
651 AATTAAGAACACATAATTAAGAACAAGTTAAATATTTATAATATAATTCAGAAAATAATAACAAG
*
67080826 ATTCATCTTAGGTTTCATTCCCCTTAGGTATTTAGGGGTTTTAGTTCATAACTAAATAAGAAAAC
716 ATTCATCTTAAGTTTCATTCCCCTTAGGTATTTAGGGGTTTTAGTTCATAACTAAATAAGAAAAC
* * ** * *
67080891 ATCTCAGAATAATAAAGAATACTAAACATAAAGAAAACCCAAAACTTTTGAAGGGGAAATTGAGG
781 ATCTCAAAATAATAAAGAATACAAAACATAAAGAAAACCCAAAACTCCTCAAGGAGAAATTGAGG
67080956 AGAGATCT
846 AGAGATCT
67080964 T
1 T
67080965 CAATCTTGAT
Statistics
Matches: 814, Mismatches: 40, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
853 814 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (853 bp):
TTGATCGCGTGATTTCATGATAGGTTTTAAATATTTATAATTAATCGTTCTTGAAACTAACTATT
ATCACGATGCAGGCAAGTGTACCTATCGAACAGTAGTAAAGTTTTAGCAAGACCAGATTGTCGAA
CCCAAAGGAACTAAAAGTACTAGTAATGACTGTCTTATTATTGTTTAGCCTAAGAATAAAGAGGT
TTTTGTTTTAACTAACTAATTATCTAAACTAAGAATTCACAGAAAATGGAATTGGGGAATTGCTT
TTGGGAAAATCGATTGAATTAAGACAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATT
CTGGCTCAGAATCGGACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGTTATGTTACT
ATCCCTATTCAAGACTAATAACGTCTAATCCCTAAATTGAATAATTGATACCTTTCTCTAATTAA
CACCCTAGGGTTGCATTAACTCCATCTATGGATCCCCTTATTAGGTTTCACCCTAATTCAGCAAA
ATCTTGTCACCTTATAGGTAGGCGCGCAATCAACTCCGCTTAATTATGAAAAATGTACTCTGAGA
CAGGGTCTATTTCTCCTCTGAATAAGAACTTATCTTGAATCAATATCCTGGGATATCAAAAAAAG
AATTAAGAACACATAATTAAGAACAAGTTAAATATTTATAATATAATTCAGAAAATAATAACAAG
ATTCATCTTAAGTTTCATTCCCCTTAGGTATTTAGGGGTTTTAGTTCATAACTAAATAAGAAAAC
ATCTCAAAATAATAAAGAATACAAAACATAAAGAAAACCCAAAACTCCTCAAGGAGAAATTGAGG
AGAGATCT
Found at i:67085075 original size:13 final size:13
Alignment explanation
Indices: 67085057--67085081 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67085047 TGTGGGTGCA
67085057 CACGGCTGTGTCG
1 CACGGCTGTGTCG
67085070 CACGGCTGTGTC
1 CACGGCTGTGTC
67085082 TGACTTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.36, T:0.24
Consensus pattern (13 bp):
CACGGCTGTGTCG
Found at i:67105638 original size:49 final size:49
Alignment explanation
Indices: 67105572--67105766 Score: 237
Period size: 49 Copynumber: 3.9 Consensus size: 49
67105562 TAGCCAAAGC
* * *
67105572 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
67105621 TATCTGGTACACGTAGTAGCCTACACTTAGTACAACACACGTGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
67105670 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAAT
* * * *
67105721 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
67105767 TCACAATAGA
Statistics
Matches: 127, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
49 84 0.66
50 2 0.02
51 41 0.32
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:67107945 original size:15 final size:15
Alignment explanation
Indices: 67107890--67107953 Score: 55
Period size: 15 Copynumber: 4.4 Consensus size: 15
67107880 TAAAGATAAC
*
67107890 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
67107904 AA-AAATCCA-ATATA
1 AAGAAATCCAGA-ATA
*
67107918 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
*
67107933 AGGAAATCCAGAATA
1 AAGAAATCCAGAATA
67107948 AAGAAA
1 AAGAAA
67107954 CCCAAGATAC
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
13 6 0.15
14 6 0.15
15 27 0.68
16 1 0.03
ACGTcount: A:0.62, C:0.14, G:0.12, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:67111123 original size:99 final size:100
Alignment explanation
Indices: 67110946--67111190 Score: 323
Period size: 99 Copynumber: 2.5 Consensus size: 100
67110936 TAGCCAAAGC
* * * ** ** *
67110946 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACTTGCGACCAATTATCTGGTACACGTAG
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCTGATACACGTAG
67111011 TAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
66 TAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * * *
67111044 TATCCGGTACACGTAGTATCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCTGATACACGTA
*
67111109 GTAGCCTGCACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * *
67111145 TTTCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
67111191 TCACAATAGA
Statistics
Matches: 125, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
98 38 0.30
99 44 0.35
100 1 0.01
101 42 0.34
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (100 bp):
TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCTGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCACAAT
Found at i:67111126 original size:50 final size:49
Alignment explanation
Indices: 67110946--67111183 Score: 305
Period size: 49 Copynumber: 4.8 Consensus size: 49
67110936 TAGCCAAAGC
* * * ** *
67110946 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACTTGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
67110995 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * *
67111044 TATCCGGTACACGTAGTATCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * *
67111094 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * *
67111145 TTTCAGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
67111184 TGCGACCTCA
Statistics
Matches: 165, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
49 87 0.53
50 42 0.25
51 35 0.21
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:67113507 original size:7 final size:7
Alignment explanation
Indices: 67113495--67113596 Score: 60
Period size: 7 Copynumber: 14.6 Consensus size: 7
67113485 CAAATTTTAT
67113495 CCCTAAA
1 CCCTAAA
*
67113502 CCCTAAT
1 CCCTAAA
*
67113509 GCCTAAA
1 CCCTAAA
*
67113516 CCCTAGA
1 CCCTAAA
67113523 CCCTAAA
1 CCCTAAA
* *
67113530 CCATATA
1 CCCTAAA
*
67113537 CCATAAA
1 CCCTAAA
** *
67113544 TACTACA
1 CCCTAAA
*
67113551 TCCTAAA
1 CCCTAAA
67113558 CCCTAAA
1 CCCTAAA
** *
67113565 CTATACA
1 CCCTAAA
67113572 CCCTAAA
1 CCCTAAA
*
67113579 CTCTAAA
1 CCCTAAA
* *
67113586 TCTTAAA
1 CCCTAAA
67113593 CCCT
1 CCCT
67113597 GTATATATTA
Statistics
Matches: 67, Mismatches: 28, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
7 67 1.00
ACGTcount: A:0.40, C:0.35, G:0.02, T:0.23
Consensus pattern (7 bp):
CCCTAAA
Done.