Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 203 of 352
Found at i:67113593 original size:35 final size:35
Alignment explanation
Indices: 67113511--67113596 Score: 93
Period size: 35 Copynumber: 2.5 Consensus size: 35
67113501 ACCCTAATGC
* * *
67113511 CTAAACCCTAGACCCTAAACCATATACCATAAATA
1 CTAAATCCTAAACCCTAAACCATACACCATAAATA
* * *
67113546 CTACATCCTAAACCCTAAACTATACACCCTAAACT-
1 CTAAATCCTAAACCCTAAACCATACACCATAAA-TA
*
67113581 CTAAATCTTAAACCCT
1 CTAAATCCTAAACCCT
67113597 GTATATATTA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
35 41 0.98
36 1 0.02
ACGTcount: A:0.42, C:0.34, G:0.01, T:0.23
Consensus pattern (35 bp):
CTAAATCCTAAACCCTAAACCATACACCATAAATA
Found at i:67113813 original size:22 final size:21
Alignment explanation
Indices: 67113788--67113862 Score: 73
Period size: 21 Copynumber: 3.5 Consensus size: 21
67113778 TACTAAACAT
67113788 TAAACCATAAACCTTAAAACC
1 TAAACCATAAACCTTAAAACC
* *
67113809 ATAAACCATAGACCTT-AGACC
1 -TAAACCATAAACCTTAAAACC
*
67113830 TTAAA-CATTAAATCTTAAAACC
1 -TAAACCA-TAAACCTTAAAACC
*
67113852 TAAACCTTAAA
1 TAAACCATAAA
67113863 ATAAATTTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
20 2 0.05
21 22 0.51
22 19 0.44
ACGTcount: A:0.49, C:0.24, G:0.03, T:0.24
Consensus pattern (21 bp):
TAAACCATAAACCTTAAAACC
Found at i:67113989 original size:41 final size:41
Alignment explanation
Indices: 67113944--67114123 Score: 252
Period size: 41 Copynumber: 4.4 Consensus size: 41
67113934 ATGCCACTAC
* *
67113944 TGCTTGACCTTTTGCAGCATTTTTATCATACACTCAGCTAT
1 TGCTTGACCTTTTGCAGCATTTTTATCATAAACACAGCTAT
* * * *
67113985 TGCTTGAACTTTTGTAGCGTTTTTATCATAAACACTGCTAT
1 TGCTTGACCTTTTGCAGCATTTTTATCATAAACACAGCTAT
* * *
67114026 TGCTTGACCTTTTGCAGCATTTTTATCATACACTCCGCTAT
1 TGCTTGACCTTTTGCAGCATTTTTATCATAAACACAGCTAT
* * *
67114067 TGCTTGACCTTTTGTAGCGTTTTTATCATAAACACAGCTAC
1 TGCTTGACCTTTTGCAGCATTTTTATCATAAACACAGCTAT
67114108 TGCTTGACCTTTTGCA
1 TGCTTGACCTTTTGCA
67114124 AACGCCACTA
Statistics
Matches: 120, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 120 1.00
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.42
Consensus pattern (41 bp):
TGCTTGACCTTTTGCAGCATTTTTATCATAAACACAGCTAT
Found at i:67114030 original size:82 final size:82
Alignment explanation
Indices: 67113940--67114123 Score: 332
Period size: 82 Copynumber: 2.2 Consensus size: 82
67113930 AACAATGCCA
67113940 CTACTGCTTGACCTTTTGCAGCATTTTTATCATACACTCAGCTATTGCTTGAACTTTTGTAGCGT
1 CTACTGCTTGACCTTTTGCAGCATTTTTATCATACACTCAGCTATTGCTTGAACTTTTGTAGCGT
*
67114005 TTTTATCATAAACACTG
66 TTTTATCATAAACACAG
* * *
67114022 CTATTGCTTGACCTTTTGCAGCATTTTTATCATACACTCCGCTATTGCTTGACCTTTTGTAGCGT
1 CTACTGCTTGACCTTTTGCAGCATTTTTATCATACACTCAGCTATTGCTTGAACTTTTGTAGCGT
67114087 TTTTATCATAAACACAG
66 TTTTATCATAAACACAG
67114104 CTACTGCTTGACCTTTTGCA
1 CTACTGCTTGACCTTTTGCA
67114124 AACGCCACTA
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 97 1.00
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (82 bp):
CTACTGCTTGACCTTTTGCAGCATTTTTATCATACACTCAGCTATTGCTTGAACTTTTGTAGCGT
TTTTATCATAAACACAG
Found at i:67114072 original size:123 final size:123
Alignment explanation
Indices: 67113891--67114121 Score: 304
Period size: 123 Copynumber: 1.9 Consensus size: 123
67113881 TTTTTGATAA
* *
67113891 AAACGCTGCTATTGCTTGACCATTTACAGCGTTTATGATAACAATGCCACTACTGCTTGACCTTT
1 AAACACTGCTATTGCTTGACCATTTACAGCGTTTATCATAACAATGCCACTACTGCTTGACCTTT
* * *
67113956 TGCAGCATTTTTATCATACACTCAGCTATTGCTTGAACTTTTGTAGCGTTTTTATCAT
66 TGCAGCATTTTTATCATAAACACAGCTACTGCTTGAACTTTTGTAGCGTTTTTATCAT
* * * * * *
67114014 AAACACTGCTATTGCTTGACCTTTTGCAGCATTTTTATCAT-ACACT-CCGCTATTGCTTGACCT
1 AAACACTGCTATTGCTTGACCATTTACAGC--GTTTATCATAACAATGCCACTACTGCTTGACCT
* * *
67114077 TTTGTAGCGTTTTTATCATAAACACAGCTACTGCTTGACCTTTTG
64 TTTGCAGCATTTTTATCATAAACACAGCTACTGCTTGAACTTTTG
67114122 CAAACGCCAC
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
123 81 0.88
124 4 0.04
125 7 0.08
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (123 bp):
AAACACTGCTATTGCTTGACCATTTACAGCGTTTATCATAACAATGCCACTACTGCTTGACCTTT
TGCAGCATTTTTATCATAAACACAGCTACTGCTTGAACTTTTGTAGCGTTTTTATCAT
Found at i:67114535 original size:7 final size:7
Alignment explanation
Indices: 67114523--67114613 Score: 74
Period size: 7 Copynumber: 13.0 Consensus size: 7
67114513 CAAATTTTAT
67114523 CCCTAAA
1 CCCTAAA
*
67114530 CCCTAAT
1 CCCTAAA
*
67114537 GCCTAAA
1 CCCTAAA
*
67114544 CCCTAGA
1 CCCTAAA
67114551 CCCTAAA
1 CCCTAAA
*
67114558 CCATAAA
1 CCCTAAA
*
67114565 CCATAAA
1 CCCTAAA
**
67114572 TACTAAA
1 CCCTAAA
*
67114579 TCCTAAA
1 CCCTAAA
67114586 CCCTAAA
1 CCCTAAA
** *
67114593 CTATATA
1 CCCTAAA
67114600 CCCTAAA
1 CCCTAAA
*
67114607 CTCTAAA
1 CCCTAAA
67114614 TATTAAACCC
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
7 65 1.00
ACGTcount: A:0.44, C:0.33, G:0.02, T:0.21
Consensus pattern (7 bp):
CCCTAAA
Found at i:67114613 original size:35 final size:35
Alignment explanation
Indices: 67114539--67114625 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 35
67114529 ACCCTAATGC
* *
67114539 CTAAACCCTAGACCCTAAACCATAAACCATAAATA
1 CTAAATCCTAAACCCTAAACCATAAACCATAAATA
* * *
67114574 CTAAATCCTAAACCCTAAACTATATACCCTAAACT-
1 CTAAATCCTAAACCCTAAACCATAAACCATAAA-TA
**
67114609 CTAAATATTAAACCCTA
1 CTAAATCCTAAACCCTA
67114626 TATATATTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 43 0.98
36 1 0.02
ACGTcount: A:0.46, C:0.30, G:0.01, T:0.23
Consensus pattern (35 bp):
CTAAATCCTAAACCCTAAACCATAAACCATAAATA
Found at i:67114623 original size:21 final size:19
Alignment explanation
Indices: 67114554--67114625 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 19
67114544 CCCTAGACCC
*
67114554 TAAACCATAAACCATAAATA
1 TAAACCCTAAACC-TAAATA
*
67114574 CTAAATCCTAAACCCTAAACTA
1 -TAAACCCTAAA-CCTAAA-TA
*
67114596 TATACCCTAAACTCTAAATA
1 TAAACCCTAAAC-CTAAATA
67114616 TTAAACCCTA
1 -TAAACCCTA
67114626 TATATATTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
20 3 0.07
21 35 0.83
22 4 0.10
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.25
Consensus pattern (19 bp):
TAAACCCTAAACCTAAATA
Found at i:67114962 original size:41 final size:41
Alignment explanation
Indices: 67114923--67115155 Score: 234
Period size: 41 Copynumber: 5.7 Consensus size: 41
67114913 TTTTTGATAA
* * *
67114923 AAACGCCGCTATTGCTTGACCTTTTACAGCGTTTATGAT-AA
1 AAACGCCGCTATTGCTTGACCTTTTGCAGCGTTT-TTATCAT
* * * *
67114964 AAATGCCACTACTGCTTGACCTTTTGCAGCATTTTTATCAT
1 AAACGCCGCTATTGCTTGACCTTTTGCAGCGTTTTTATCAT
* * * * *
67115005 ACACTCCGCTATTGCATGACCTTTTGTAACGTTTTTATCAT
1 AAACGCCGCTATTGCTTGACCTTTTGCAGCGTTTTTATCAT
* * * *
67115046 AAACACCGCTACTACTTGACCTTTTGCAGCATTTTTATCAT
1 AAACGCCGCTATTGCTTGACCTTTTGCAGCGTTTTTATCAT
* * * *
67115087 ACACTCCGCTATTGCTTGACCTTCTGTAGCGTTTTTATCAT
1 AAACGCCGCTATTGCTTGACCTTTTGCAGCGTTTTTATCAT
* * * *
67115128 AAACACAGCTAGTGTTTGACCTTTTGCA
1 AAACGCCGCTATTGCTTGACCTTTTGCA
67115156 AATGCCACTA
Statistics
Matches: 153, Mismatches: 38, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
40 3 0.02
41 150 0.98
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (41 bp):
AAACGCCGCTATTGCTTGACCTTTTGCAGCGTTTTTATCAT
Found at i:67115058 original size:82 final size:82
Alignment explanation
Indices: 67114972--67115155 Score: 305
Period size: 82 Copynumber: 2.2 Consensus size: 82
67114962 AAAAATGCCA
*
67114972 CTACTGCTTGACCTTTTGCAGCATTTTTATCATACACTCCGCTATTGCATGACCTTTTGTAACGT
1 CTACTGCTTGACCTTTTGCAGCATTTTTATCATACACTCCGCTATTGCATGACCTTCTGTAACGT
*
67115037 TTTTATCATAAACACCG
66 TTTTATCATAAACACAG
* * *
67115054 CTACTACTTGACCTTTTGCAGCATTTTTATCATACACTCCGCTATTGCTTGACCTTCTGTAGCGT
1 CTACTGCTTGACCTTTTGCAGCATTTTTATCATACACTCCGCTATTGCATGACCTTCTGTAACGT
67115119 TTTTATCATAAACACAG
66 TTTTATCATAAACACAG
* *
67115136 CTAGTGTTTGACCTTTTGCA
1 CTACTGCTTGACCTTTTGCA
67115156 AATGCCACTA
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 94 1.00
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (82 bp):
CTACTGCTTGACCTTTTGCAGCATTTTTATCATACACTCCGCTATTGCATGACCTTCTGTAACGT
TTTTATCATAAACACAG
Found at i:67117940 original size:18 final size:17
Alignment explanation
Indices: 67117919--67117971 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
67117909 GAAACATTAT
67117919 GAGAACTAGAATCAAAAA
1 GAGAA-TAGAATCAAAAA
* *
67117937 GAGAATCAGAATCAGAAT
1 GAGAAT-AGAATCAAAAA
*
67117955 CAGAATTAGAATCAAAA
1 GAGAA-TAGAATCAAAA
67117972 TTAGGTGACA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.03
18 27 0.93
19 1 0.03
ACGTcount: A:0.57, C:0.11, G:0.17, T:0.15
Consensus pattern (17 bp):
GAGAATAGAATCAAAAA
Found at i:67117947 original size:6 final size:6
Alignment explanation
Indices: 67117938--67118019 Score: 60
Period size: 6 Copynumber: 13.3 Consensus size: 6
67117928 AATCAAAAAG
* * * *
67117938 AGAATC AGAATC AGAATC AGAATT AGAATC AAAATT AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* *
67117987 AGAATC AGTATT AGGTAA-C AGAATC AGAATC AG
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AG
67118020 TATTAGATGA
Statistics
Matches: 58, Mismatches: 12, Indels: 12
0.71 0.15 0.15
Matches are distributed among these distances:
5 3 0.05
6 49 0.84
7 4 0.07
8 2 0.03
ACGTcount: A:0.48, C:0.12, G:0.20, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:67117990 original size:25 final size:25
Alignment explanation
Indices: 67117955--67118044 Score: 117
Period size: 25 Copynumber: 3.6 Consensus size: 25
67117945 GAATCAGAAT
* **
67117955 CAGAATTAGAATCAAAATTAGGTGA
1 CAGAATCAGAATCAGTATTAGGTGA
*
67117980 CAGAATCAGAATCAGTATTAGGTAA
1 CAGAATCAGAATCAGTATTAGGTGA
*
67118005 CAGAATCAGAATCAGTATTAGATGA
1 CAGAATCAGAATCAGTATTAGGTGA
* *
67118030 CAGAATAAAAATCAG
1 CAGAATCAGAATCAG
67118045 AATGTGAATG
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 57 1.00
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.22
Consensus pattern (25 bp):
CAGAATCAGAATCAGTATTAGGTGA
Found at i:67118205 original size:27 final size:26
Alignment explanation
Indices: 67118165--67118230 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
67118155 AGCATGGCTG
* *
67118165 CCAGAACATATATTATGACAGAGTCA
1 CCAGAACAGATATTATGACAGAGCCA
* *
67118191 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTATGACAGAGCCA
67118218 CCAGAATCAGATA
1 CCAGAA-CAGATA
67118231 ATGTAGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTATGACAGAGCCA
Found at i:67118243 original size:27 final size:27
Alignment explanation
Indices: 67118189--67118245 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
67118179 ATGACAGAGT
* * *
67118189 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTAGCAAAGC
67118216 CACCAGA-ATCAGATAATGTAGCAAAGC
1 CACCAGATA-CAGATAATGTAGCAAAGC
67118243 CAC
1 CAC
67118246 TTAACAGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTAGCAAAGC
Found at i:67118364 original size:22 final size:23
Alignment explanation
Indices: 67118339--67118391 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 23
67118329 AACGATACAC
67118339 AGCCATAAT-TAGGTTGGCACAA
1 AGCCATAATGTAGGTTGGCACAA
*
67118361 AGCCAT-ATGTAGGTTGGCGCAA
1 AGCCATAATGTAGGTTGGCACAA
*
67118383 AGCCGTAAT
1 AGCCATAAT
67118392 CAGAATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 2 0.07
22 23 0.85
23 2 0.07
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (23 bp):
AGCCATAATGTAGGTTGGCACAA
Found at i:67118938 original size:27 final size:27
Alignment explanation
Indices: 67118910--67119049 Score: 190
Period size: 27 Copynumber: 5.2 Consensus size: 27
67118900 GGCAAAATGG
* * * *
67118910 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
67118937 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
67118964 TATTTCTACCCTACAAGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
67118991 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
67119018 TAATTCTACCCTACAAGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
67119045 TAATT
1 TAATT
67119050 TTGTAAATCG
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:67119075 original size:27 final size:27
Alignment explanation
Indices: 67119045--67119119 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 27
67119035 GGTATTTCAA
67119045 TAATTTTGTAAATCGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAATGG
* * ***
67119072 TAATTCTGTAAATCGGGGGTACTTTGG
1 TAATTTTGTAAATCGAGGGTAAAATGG
** *
67119099 TAATTTTACAAGTCGAGGGTA
1 TAATTTTGTAAATCGAGGGTA
67119120 TTTCAGTAAT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.35
Consensus pattern (27 bp):
TAATTTTGTAAATCGAGGGTAAAATGG
Found at i:67123924 original size:21 final size:21
Alignment explanation
Indices: 67123886--67123925 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
67123876 TTATGGTCAG
*
67123886 ATTTCGGTTTTTCTGTGGTTA
1 ATTTCGGTTTTTCGGTGGTTA
67123907 ATTTCAGGTTTTT-GGTGGT
1 ATTTC-GGTTTTTCGGTGGT
67123926 GTTTGACATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.10, C:0.07, G:0.28, T:0.55
Consensus pattern (21 bp):
ATTTCGGTTTTTCGGTGGTTA
Found at i:67125203 original size:27 final size:27
Alignment explanation
Indices: 67125159--67125369 Score: 153
Period size: 27 Copynumber: 7.8 Consensus size: 27
67125149 AGACTCCAAA
** *
67125159 TTGTAAAATTACCAAAATACCCCCAGT
1 TTGTAAAATTACTGAAATACCCTCAGT
* **
67125186 TTGTAAAATTATTGAAATA-CCTTTGAT
1 TTGTAAAATTACTGAAATACCCTCAG-T
*
67125213 TTATAAAATTACTGAAATACCCTCAGT
1 TTGTAAAATTACTGAAATACCCTCAGT
** *
67125240 TTGTAAAATTACCAAAATGCCCTC-GAT
1 TTGTAAAATTACTGAAATACCCTCAG-T
* * * *
67125267 TTATAAAATTACTAAAATACTCCTAATT
1 TTGTAAAATTACTGAAATAC-CCTCAGT
*
67125295 TTGTAAAATTACTGAAATACCCT-TGT
1 TTGTAAAATTACTGAAATACCCTCAGT
* ** *
67125321 AGTGTAAAATTACCAAAATACCC-CTGT
1 -TTGTAAAATTACTGAAATACCCTCAGT
*
67125348 AGTGTAAAATTA-TCGAAATACC
1 -TTGTAAAATTACT-GAAATACC
67125370 TTTGTAGTGT
Statistics
Matches: 148, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
26 5 0.03
27 117 0.79
28 26 0.18
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTCAGT
Found at i:67125244 original size:54 final size:54
Alignment explanation
Indices: 67125162--67125396 Score: 215
Period size: 54 Copynumber: 4.3 Consensus size: 54
67125152 CTCCAAATTG
* ** *
67125162 TAAAATTACCAAAATACCCCCAGTTTGTAAAATTATTGAAATACCTTTGATTTA
1 TAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCGAAATACCCTTGATTTA
** * * *
67125216 TAAAATTACTGAAATACCCTCAGTTTGTAAAATTACCAAAATGCCCTCGATTTA
1 TAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCGAAATACCCTTGATTTA
* * * * * *
67125270 TAAAATTACTAAAATACTCCTAATTTTGTAAAATTACTGAAATACCCTTG-TAGTG
1 TAAAATTACCAAAATAC-CCTCAGTTTGTAAAATTACCGAAATACCCTTGAT-TTA
* * * * * *
67125325 TAAAATTACCAAAATACCC-CTGTAGTGTAAAATTATCGAAATACCTTTG-TAGTG
1 TAAAATTACCAAAATACCCTCAGT-TTGTAAAATTACCGAAATACCCTTGAT-TTA
*
67125379 TAAAATTACAAAAATACC
1 TAAAATTACCAAAATACC
67125397 TCTATAGGGT
Statistics
Matches: 151, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 107 0.71
55 43 0.28
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCGAAATACCCTTGATTTA
Found at i:67125334 original size:82 final size:81
Alignment explanation
Indices: 67125160--67125344 Score: 223
Period size: 82 Copynumber: 2.3 Consensus size: 81
67125150 GACTCCAAAT
* * * * *
67125160 TGTAAAATTACCAAAATACCCCCAGTTTGTAAAATTATTGAAATACCTTTGATTTATAAAATTAC
1 TGTAAAATTACCAAAATACCCCCAGTTTATAAAATTACTAAAATACCTCTAATTTATAAAATTAC
*
67125225 TGAAATACCCTCAGTT
66 TGAAATACCCTCAGTG
* * *
67125241 TGTAAAATTACCAAAATGCCCTC-GATTTATAAAATTACTAAAATA-CTCCTAATTTTGTAAAAT
1 TGTAAAATTACCAAAATACCCCCAG-TTTATAAAATTACTAAAATACCT-CTAA-TTTATAAAAT
*
67125304 TACTGAAATACCCT-TGTAG
63 TACTGAAATACCCTCAGT-G
67125323 TGTAAAATTACCAAAATACCCC
1 TGTAAAATTACCAAAATACCCC
67125345 TGTAGTGTAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
80 3 0.03
81 42 0.48
82 43 0.49
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (81 bp):
TGTAAAATTACCAAAATACCCCCAGTTTATAAAATTACTAAAATACCTCTAATTTATAAAATTAC
TGAAATACCCTCAGTG
Found at i:67125367 original size:82 final size:81
Alignment explanation
Indices: 67125160--67125370 Score: 218
Period size: 82 Copynumber: 2.6 Consensus size: 81
67125150 GACTCCAAAT
* * * *
67125160 TGTAAAATTACCAAAATACCCCCAGT-TTGTAAAATTATTGAAATACCTTTGATTTATAAAATTA
1 TGTAAAATTACCAAAATA-CCCCTGTATTGTAAAATTATCGAAATACCTCTAATTTATAAAATTA
*
67125224 CTGAAATACCCTCAGTT
65 CTGAAATACCCTCAGTG
* * * *
67125241 TGTAAAATTACCAAAAT-GCCCTCG-ATTTATAAAATTA-CTAAAATA-CTCCTAATTTTGTAAA
1 TGTAAAATTACCAAAATACCCCT-GTA-TTGTAAAATTATC-GAAATACCT-CTAA-TTTATAAA
*
67125302 ATTACTGAAATACCCT-TGTAG
61 ATTACTGAAATACCCTCAGT-G
*
67125323 TGTAAAATTACCAAAATACCCCTGTAGTGTAAAATTATCGAAATACCT
1 TGTAAAATTACCAAAATACCCCTGTATTGTAAAATTATCGAAATACCT
67125371 TTGTAGTGTA
Statistics
Matches: 105, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
79 3 0.03
80 3 0.03
81 36 0.34
82 55 0.52
83 8 0.08
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (81 bp):
TGTAAAATTACCAAAATACCCCTGTATTGTAAAATTATCGAAATACCTCTAATTTATAAAATTAC
TGAAATACCCTCAGTG
Found at i:67125397 original size:27 final size:26
Alignment explanation
Indices: 67125296--67125396 Score: 130
Period size: 27 Copynumber: 3.7 Consensus size: 26
67125286 CTCCTAATTT
*
67125296 TGTAAAATTACTGAAATACCCTTGTAG
1 TGTAAAATTAC-AAAATACCCTTGTAG
*
67125323 TGTAAAATTACCAAAATACCCCTGTAG
1 TGTAAAATTA-CAAAATACCCTTGTAG
* *
67125350 TGTAAAATTATCGAAATACCTTTGTAG
1 TGTAAAATTA-CAAAATACCCTTGTAG
67125377 TGTAAAATTACAAAAATACC
1 TGTAAAATTAC-AAAATACC
67125397 TCTATAGGGT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 1 0.02
27 63 0.97
28 1 0.02
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.31
Consensus pattern (26 bp):
TGTAAAATTACAAAATACCCTTGTAG
Found at i:67125408 original size:27 final size:26
Alignment explanation
Indices: 67125296--67125410 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 26
67125286 CTCCTAATTT
*
67125296 TGTAAAATTACTGAAATACC-CTTGTAG
1 TGTAAAATTAC-AAAATACCTC-TGTAG
*
67125323 TGTAAAATTACCAAAATACCCCTGTAG
1 TGTAAAATTA-CAAAATACCTCTGTAG
* *
67125350 TGTAAAATTATCGAAATACCTTTGTAG
1 TGTAAAATTA-CAAAATACCTCTGTAG
*
67125377 TGTAAAATTACAAAAATACCTCTATAG
1 TGTAAAATTAC-AAAATACCTCTGTAG
*
67125404 GGTAAAA
1 TGTAAAA
67125411 CGACTATTTT
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
26 1 0.01
27 73 0.96
28 2 0.03
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.30
Consensus pattern (26 bp):
TGTAAAATTACAAAATACCTCTGTAG
Found at i:67125887 original size:27 final size:27
Alignment explanation
Indices: 67125796--67125898 Score: 89
Period size: 27 Copynumber: 3.8 Consensus size: 27
67125786 TATCTTGATT
* * *
67125796 ATGGCTTTGTGCCAATTATATTTACCT
1 ATGGCTTTGTGCCGATCATATTTACCC
* * * ***
67125823 GTGGCTATGTGCCTATCATATTTATTG
1 ATGGCTTTGTGCCGATCATATTTACCC
* * *
67125850 ATGACTCTGTGTCGATCATATTTACCC
1 ATGGCTTTGTGCCGATCATATTTACCC
*
67125877 ATGGCTTTGTGCCGATTATATT
1 ATGGCTTTGTGCCGATCATATT
67125899 ACCATCGCTG
Statistics
Matches: 57, Mismatches: 19, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.43
Consensus pattern (27 bp):
ATGGCTTTGTGCCGATCATATTTACCC
Found at i:67126211 original size:27 final size:27
Alignment explanation
Indices: 67126180--67126235 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
67126170 ATGGGCTAGG
* * *
67126180 CCCAATTGATTTTGTTATGGG-TTGTGA
1 CCCAAATGATATTGTAATGGGCTT-TGA
67126207 CCCAAATGATATTGTAATGGGCTTTGA
1 CCCAAATGATATTGTAATGGGCTTTGA
67126234 CC
1 CC
67126236 TACGTATGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (27 bp):
CCCAAATGATATTGTAATGGGCTTTGA
Found at i:67129460 original size:26 final size:26
Alignment explanation
Indices: 67129431--67129503 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
67129421 CTCTTTTAAT
* * *
67129431 AACTGAGGTAAAAGGCCTTTTCGGTA
1 AACTGAGGCAAAAGCCCTTTTCAGTA
* *
67129457 AACTGGGGCATAAGCCCTTTTCAGTA
1 AACTGAGGCAAAAGCCCTTTTCAGTA
* *
67129483 AACTGGGGCATAAGCCCTTTT
1 AACTGAGGCAAAAGCCCTTTT
67129504 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
AACTGAGGCAAAAGCCCTTTTCAGTA
Found at i:67129615 original size:20 final size:20
Alignment explanation
Indices: 67129553--67129595 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
67129543 TTATAAATAC
67129553 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67129573 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
67129593 ATC
1 ATC
67129596 GTACATATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:67129625 original size:20 final size:21
Alignment explanation
Indices: 67129590--67129628 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
67129580 GCATATCGTA
*
67129590 CATATCGTA-CATATCATGTG
1 CATATCATATCATATCATGTG
67129610 CATATCATATCA-ATCATGT
1 CATATCATATCATATCATGT
67129629 ATATCAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (21 bp):
CATATCATATCATATCATGTG
Found at i:67129634 original size:29 final size:29
Alignment explanation
Indices: 67129561--67129626 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
67129551 ACATCATGTG
*
67129561 CATATCATACATATCATGTGCATATCGTA
1 CATATCATACATATCATGTGCATATCATA
*
67129590 CATATCGTACATATCATGTGCATATCATA
1 CATATCATACATATCATGTGCATATCATA
67129619 TCA-ATCAT
1 -CATATCAT
67129627 GTATATCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 31 0.94
30 2 0.06
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (29 bp):
CATATCATACATATCATGTGCATATCATA
Found at i:67137577 original size:26 final size:26
Alignment explanation
Indices: 67137548--67137620 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
67137538 CTCTTTTAAT
* *
67137548 AACTGGGGCAAAAGGCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
67137574 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
67137600 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
67137621 GTATTTCCTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:67137704 original size:25 final size:25
Alignment explanation
Indices: 67137670--67137719 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
67137660 TTATGAATAC
67137670 ATCATGTGCATATCATACATATCAT
1 ATCATGTGCATATCATACATATCAT
67137695 ATCATGTGCATATCATACATATCAT
1 ATCATGTGCATATCATACATATCAT
67137720 GTGCATATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (25 bp):
ATCATGTGCATATCATACATATCAT
Found at i:67137706 original size:20 final size:21
Alignment explanation
Indices: 67137683--67137741 Score: 97
Period size: 20 Copynumber: 3.0 Consensus size: 21
67137673 ATGTGCATAT
67137683 CATA-CATATCATATCATGTG
1 CATATCATATCATATCATGTG
67137703 CATATCATA-CATATCATGTG
1 CATATCATATCATATCATGTG
67137723 CATATCATATCA-ATCATGT
1 CATATCATATCATATCATGT
67137742 ATATCAAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
20 31 0.84
21 6 0.16
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (21 bp):
CATATCATATCATATCATGTG
Found at i:67137708 original size:11 final size:11
Alignment explanation
Indices: 67137692--67137730 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
67137682 TCATACATAT
67137692 CATATCATGTG
1 CATATCATGTG
*
67137703 CATATCA--TA
1 CATATCATGTG
67137712 CATATCATGTG
1 CATATCATGTG
67137723 CATATCAT
1 CATATCAT
67137731 ATCAATCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (11 bp):
CATATCATGTG
Found at i:67137731 original size:25 final size:25
Alignment explanation
Indices: 67137670--67137734 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
67137660 TTATGAATAC
*
67137670 ATCATGTGCATATCATACATATCAT
1 ATCATATGCATATCATACATATCAT
*
67137695 ATCATGTGCATATCATACATATCAT
1 ATCATATGCATATCATACATATCAT
*
67137720 GTGCATAT-CATATCA
1 AT-CATATGCATATCA
67137735 ATCATGTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 33 0.89
26 4 0.11
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.35
Consensus pattern (25 bp):
ATCATATGCATATCATACATATCAT
Found at i:67137738 original size:9 final size:10
Alignment explanation
Indices: 67137678--67137739 Score: 67
Period size: 9 Copynumber: 6.3 Consensus size: 10
67137668 ACATCATGTG
67137678 CATATCATA-
1 CATATCATAT
67137687 CATATCATAT
1 CATATCATAT
*
67137697 CATGTGCATAT
1 CATAT-CATAT
67137708 CATA-CATAT
1 CATATCATAT
*
67137717 CATGTGCATAT
1 CATAT-CATAT
67137728 CATATCA-AT
1 CATATCATAT
67137737 CAT
1 CAT
67137740 GTATATCAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
9 22 0.49
10 6 0.13
11 17 0.38
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.35
Consensus pattern (10 bp):
CATATCATAT
Found at i:67137747 original size:9 final size:10
Alignment explanation
Indices: 67137682--67137747 Score: 59
Period size: 9 Copynumber: 6.8 Consensus size: 10
67137672 CATGTGCATA
*
67137682 TCATA-CATA
1 TCATATCATG
67137691 TCATATCATG
1 TCATATCATG
67137701 TGCATATCAT-
1 T-CATATCATG
*
67137711 ACATATCATG
1 TCATATCATG
*
67137721 TGCATATCATA
1 T-CATATCATG
67137732 TCA-ATCATG
1 TCATATCATG
67137741 T-ATATCA
1 TCATATCA
67137748 AAATCCCATG
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.02
9 23 0.49
10 6 0.13
11 17 0.36
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (10 bp):
TCATATCATG
Found at i:67141257 original size:16 final size:17
Alignment explanation
Indices: 67141236--67141271 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
67141226 GTAATGCCCC
67141236 AAAAATCCCGAAA-CCT
1 AAAAATCCCGAAATCCT
*
67141252 AAAAATCTCGAAATCCT
1 AAAAATCCCGAAATCCT
67141269 AAA
1 AAA
67141272 CTTTCTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.53, C:0.25, G:0.06, T:0.17
Consensus pattern (17 bp):
AAAAATCCCGAAATCCT
Found at i:67142811 original size:29 final size:28
Alignment explanation
Indices: 67142759--67142873 Score: 140
Period size: 29 Copynumber: 4.0 Consensus size: 28
67142749 GTGAGCATGA
* *
67142759 ATATGAATGTGAGTGGGCCTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
67142787 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
67142816 ATATACAGGTGATTTGGGCCTAATAGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
67142845 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
67142873 A
1 A
67142874 GATACAGGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
28 26 0.35
29 49 0.65
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:67142881 original size:57 final size:58
Alignment explanation
Indices: 67142772--67142882 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 58
67142762 TGAATGTGAG
* * *
67142772 TGGGCCTAATGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATAGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
* *
67142830 TGGGCCTAATAGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAATAGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGT
67142883 AAGTGAAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 24 0.50
58 24 0.50
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (58 bp):
TGGGCCTAATAGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:67149305 original size:55 final size:53
Alignment explanation
Indices: 67149180--67149368 Score: 218
Period size: 55 Copynumber: 3.5 Consensus size: 53
67149170 AACTTACCAT
* * *
67149180 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * *
67149233 TGCCATGCCTTGTCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * * * *
67149288 TGCCATGTCTTGACATGGTTTTCCATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
*
67149342 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
67149369 ATATCCTTAT
Statistics
Matches: 113, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.02
53 34 0.30
54 33 0.29
55 42 0.37
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:67149359 original size:54 final size:54
Alignment explanation
Indices: 67149169--67149376 Score: 231
Period size: 53 Copynumber: 3.9 Consensus size: 54
67149159 TTTTCTTTTT
* * * * *
67149169 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* ** *
67149222 GAACTCACCAATGCCATGCCTTGTCATGGTCTTACATGGGA-CCTTTTCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* * * * *
67149276 GTAACTCATCAATGCCATGTCTTGACATGGTTTTCCATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * *
67149331 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
67149377 ATCTTACCAA
Statistics
Matches: 129, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
52 2 0.02
53 43 0.33
54 40 0.31
55 42 0.33
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:67149410 original size:47 final size:47
Alignment explanation
Indices: 67149355--67149476 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
67149345 CATGCCTTGG
* *
67149355 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
67149402 CATGGTCTTACATGGTATCCTTGTCTTACCAAATTCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
67149449 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
67149477 ATGCCAATGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:67149620 original size:44 final size:44
Alignment explanation
Indices: 67149571--67149654 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
67149561 TCCTTAACCG
* *
67149571 TCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCCA
1 TCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTTCCA
* *
67149615 TCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
67149655 GAGATATCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (44 bp):
TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTTCCA
Found at i:67150234 original size:30 final size:31
Alignment explanation
Indices: 67150194--67150251 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
67150184 CTAACTCAAA
67150194 CTTTGACAAAATTACAATTTTGCCCCTAAAC
1 CTTTGACAAAATTACAATTTTGCCCCTAAAC
**
67150225 CTTTG-CAAAATTATGATTTTGCCCCTA
1 CTTTGACAAAATTACAATTTTGCCCCTA
67150252 GGCACGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (31 bp):
CTTTGACAAAATTACAATTTTGCCCCTAAAC
Found at i:67153321 original size:46 final size:45
Alignment explanation
Indices: 67153271--67153445 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
67153261 GATGTTGGCA
67153271 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
67153317 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
67153364 TCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
67153409 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67153446 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 1 0.01
45 7 0.06
46 84 0.77
47 8 0.07
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:67153433 original size:92 final size:93
Alignment explanation
Indices: 67153267--67153437 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
67153257 CTAGGATGTT
* *
67153267 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67153332 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
67153360 GGCATCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67153424 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
67153438 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 67 0.89
93 8 0.11
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:67156397 original size:28 final size:27
Alignment explanation
Indices: 67156361--67156416 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 27
67156351 TGGGTTTCTT
67156361 TATCCTGGATCTCTTTATTCTGGTTTTC
1 TATCCTGGATCTCTTTATTC-GGTTTTC
* *
67156389 TATCTTGGATTTCTTTATTCGGTTTTC
1 TATCCTGGATCTCTTTATTCGGTTTTC
67156416 T
1 T
67156417 TGTTATCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 8 0.31
28 18 0.69
ACGTcount: A:0.11, C:0.18, G:0.14, T:0.57
Consensus pattern (27 bp):
TATCCTGGATCTCTTTATTCGGTTTTC
Found at i:67158845 original size:46 final size:46
Alignment explanation
Indices: 67158792--67158964 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
67158782 TTGAGCATTG
*
67158792 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
*** * * ** *
67158838 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACGTCC
* * *
67158885 GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
* *
67158931 GAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67158965 GGGGGGGTTA
Statistics
Matches: 102, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 66 0.65
47 36 0.35
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
Found at i:67161353 original size:8 final size:8
Alignment explanation
Indices: 67161340--67161377 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
67161330 ATCAGTAAAA
67161340 GCCGAAAT
1 GCCGAAAT
67161348 GCCGAAAT
1 GCCGAAAT
*
67161356 ACCGAAAT
1 GCCGAAAT
*
67161364 GCCGAAAA
1 GCCGAAAT
67161372 GCCGAA
1 GCCGAA
67161378 GGTTTGGCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.42, C:0.26, G:0.24, T:0.08
Consensus pattern (8 bp):
GCCGAAAT
Found at i:67161376 original size:16 final size:16
Alignment explanation
Indices: 67161336--67161377 Score: 68
Period size: 16 Copynumber: 2.6 Consensus size: 16
67161326 ATGTATCAGT
67161336 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
67161352 AAATA-CCGAAATGCCG
1 AAA-AGCCGAAATGCCG
67161368 AAAAGCCGAA
1 AAAAGCCGAA
67161378 GGTTTGGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 1 0.04
16 22 0.92
17 1 0.04
ACGTcount: A:0.48, C:0.24, G:0.21, T:0.07
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:67161655 original size:29 final size:29
Alignment explanation
Indices: 67161617--67161703 Score: 124
Period size: 29 Copynumber: 3.0 Consensus size: 29
67161607 TTAACAGGCA
67161617 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
67161646 ATATACATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
67161675 ATATGAAAAG-GA-TTGGGCTTAATGGGCC
1 ATAT-AAATGTGATTTGGGCCTAATGGGCC
67161703 A
1 A
67161704 AATATAGGTA
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
28 16 0.30
29 34 0.64
30 3 0.06
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:67169959 original size:49 final size:47
Alignment explanation
Indices: 67169796--67170236 Score: 756
Period size: 47 Copynumber: 9.3 Consensus size: 47
67169786 AAACATGCAG
67169796 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
67169843 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
67169890 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
67169939 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
67169986 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
67170035 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
67170084 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
67170131 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * * *
67170178 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
67170225 AAATGTGATAAG
1 ATATGTGATAAG
67170237 TCCCAAAGGG
Statistics
Matches: 380, Mismatches: 10, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 237 0.62
49 143 0.38
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:67169986 original size:96 final size:96
Alignment explanation
Indices: 67169796--67170236 Score: 759
Period size: 96 Copynumber: 4.6 Consensus size: 96
67169786 AAACATGCAG
67169796 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
67169859 AATGGCCGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
67169890 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
67169955 AATGGCCGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
67169986 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
67170051 AATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 AATGGCCGATGTGATGAATGTGAAAGTG--TAT
67170084 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
67170147 AATGGCCGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * * *
67170178 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
67170237 TCCCAAAGGG
Statistics
Matches: 334, Mismatches: 7, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
94 94 0.28
95 1 0.00
96 192 0.57
98 47 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:67170411 original size:37 final size:37
Alignment explanation
Indices: 67170355--67170433 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
67170345 CCGAGCTCTA
* * * *
67170355 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
*
67170392 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
67170429 AAGAC
1 AAGAC
67170434 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:67171871 original size:47 final size:46
Alignment explanation
Indices: 67171808--67172074 Score: 221
Period size: 47 Copynumber: 5.7 Consensus size: 46
67171798 TTGTTGGCTT
67171808 GTGTAAGACATGTCTGGGACAT-GCATCAGCCACATTATGAGAGCCA
1 GTGTAAGACATGTCTGGGACATGGCATCAG-CACATTATGAGAGCCA
*
67171854 GTGTAAGACCATGTCTGGGACATGGCATCA--ACATTGAGATGAGAGCTA
1 GTGTAAGA-CATGTCTGGGACATGGCATCAGCACATT---ATGAGAGCCA
* * * **
67171902 GGGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGACAT-A-AGCCA
1 GTGTAAGACATGTCTGGGACATGGCATCAG-CAC-A-TTATGAGAGCCA
* ** * *
67171948 GTGCAAGACATGTCTGGGACAT-GCATCAGCTACAAGATGATAGTCA
1 GTGTAAGACATGTCTGGGACATGGCATCAGC-ACATTATGAGAGCCA
*
67171994 GTGTAAGACCATGTCTGGGACATGGCATC-G-AC-TTGAGATGTGAGCCA
1 GTGTAAGA-CATGTCTGGGACATGGCATCAGCACATT---ATGAGAGCCA
*
67172041 GTGTAAGACCATGTCTAGGACATGGCATCAGCAC
1 GTGTAAGA-CATGTCTGGGACATGGCATCAGCAC
67172075 CTTACCCTCG
Statistics
Matches: 181, Mismatches: 20, Indels: 37
0.76 0.08 0.16
Matches are distributed among these distances:
44 3 0.02
45 10 0.06
46 55 0.30
47 79 0.44
48 30 0.17
49 3 0.02
50 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (46 bp):
GTGTAAGACATGTCTGGGACATGGCATCAGCACATTATGAGAGCCA
Found at i:67172064 original size:140 final size:141
Alignment explanation
Indices: 67171812--67172069 Score: 403
Period size: 140 Copynumber: 1.8 Consensus size: 141
67171802 TGGCTTGTGT
**
67171812 AAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACAT
1 AAGACATGTCTGGGACATGCATCAGCCACAAGATGAGAGCCAGTGTAAGACCATGTCTGGGACAT
* *
67171877 GGCATCAACATTGAGATGAGAGCTAGGGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGACA
66 GGCATCAACATTGAGATGAGAGCCAGGGTAAGACATGTCTAGGACATGGCATCGGCCTCGAGACA
67171941 TAAGCCAGTGC
131 TAAGCCAGTGC
* * *
67171952 AAGACATGTCTGGGACATGCATCAGCTACAAGATGATAGTCAGTGTAAGACCATGTCTGGGACAT
1 AAGACATGTCTGGGACATGCATCAGCCACAAGATGAGAGCCAGTGTAAGACCATGTCTGGGACAT
* * *
67172017 GGCATCGAC-TTGAGATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
66 GGCATCAACATTGAGATGAGAGCCAGGGTAAGA-CATGTCTAGGACATGGCATC
67172070 AGCACCTTAC
Statistics
Matches: 106, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
139 20 0.19
140 81 0.76
141 5 0.05
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (141 bp):
AAGACATGTCTGGGACATGCATCAGCCACAAGATGAGAGCCAGTGTAAGACCATGTCTGGGACAT
GGCATCAACATTGAGATGAGAGCCAGGGTAAGACATGTCTAGGACATGGCATCGGCCTCGAGACA
TAAGCCAGTGC
Found at i:67176696 original size:18 final size:18
Alignment explanation
Indices: 67176673--67176733 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
67176663 GTATGGATTA
67176673 GGCCGTGTGGACACACAT
1 GGCCGTGTGGACACACAT
* *
67176691 GGCCGTGTCGTCACACAT
1 GGCCGTGTGGACACACAT
67176709 -GCCTGTGTGGACACACAT
1 GGCC-GTGTGGACACACAT
*
67176727 GCCCGTG
1 GGCCGTG
67176734 CCGTCACACA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 3 0.08
18 31 0.86
19 2 0.06
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (18 bp):
GGCCGTGTGGACACACAT
Found at i:67176724 original size:36 final size:36
Alignment explanation
Indices: 67176677--67176747 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
67176667 GGATTAGGCC
* *
67176677 GTGTGGACACACATGGCCGTGTCGTCACACATGCCT
1 GTGTGGACACACATGCCCGTGCCGTCACACATGCCT
67176713 GTGTGGACACACATGCCCGTGCCGTCACACATGCC
1 GTGTGGACACACATGCCCGTGCCGTCACACATGCC
67176748 CATGTGGCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.20
Consensus pattern (36 bp):
GTGTGGACACACATGCCCGTGCCGTCACACATGCCT
Found at i:67176741 original size:18 final size:18
Alignment explanation
Indices: 67176684--67176748 Score: 85
Period size: 18 Copynumber: 3.6 Consensus size: 18
67176674 GCCGTGTGGA
*
67176684 CACACATGGCCGTGTCGT
1 CACACATGCCCGTGTCGT
* * *
67176702 CACACATGCCTGTGTGGA
1 CACACATGCCCGTGTCGT
*
67176720 CACACATGCCCGTGCCGT
1 CACACATGCCCGTGTCGT
67176738 CACACATGCCC
1 CACACATGCCC
67176749 ATGTGGCTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.20, C:0.38, G:0.23, T:0.18
Consensus pattern (18 bp):
CACACATGCCCGTGTCGT
Found at i:67178431 original size:44 final size:42
Alignment explanation
Indices: 67178368--67178487 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 42
67178358 ACATGTATCA
*
67178368 CATCCATAATTAACTCGAACCAACTCAACGAGCTCGGATGCTCT
1 CATCCATAATGAACTCGAACCAACTCAACGAGCTC-GATGC-CT
*
67178412 CATCCATAATGAACTCGAACCAACTCAACGATCTCGATGCCT
1 CATCCATAATGAACTCGAACCAACTCAACGAGCTCGATGCCT
* *
67178454 TATACATATCATGAAC-CTGAACCAACTCAACGAG
1 CATCCATA--ATGAACTC-GAACCAACTCAACGAG
67178488 TACAGATTTC
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
42 8 0.12
43 6 0.09
44 54 0.79
ACGTcount: A:0.35, C:0.31, G:0.12, T:0.22
Consensus pattern (42 bp):
CATCCATAATGAACTCGAACCAACTCAACGAGCTCGATGCCT
Found at i:67183811 original size:46 final size:47
Alignment explanation
Indices: 67183603--67183905 Score: 155
Period size: 46 Copynumber: 6.4 Consensus size: 47
67183593 CGATGCCACA
* * *
67183603 TCCCCGACATGGTCTTACACTGGCTA-TCATCATCGAGGCCGATGCCATG
1 TCCCAGACAT-GTCTTACACTGGCTACTCGTC-TCAAGGCCGATG-CATG
* * * * * **
67183652 TCCTAGACATGGTCTTATACTAGCT-CTCGCATATC-CGTGTTGATGCCATG
1 TCCCAGACAT-GTCTTACACTGGCTACTCG--TCTCAAG-GCCGATG-CATG
* ** * *
67183702 TCCCAGACGTGGTCTTACACTAAC-ACATCG-CT-TA-GCCGATGTATG
1 TCCCAGACAT-GTCTTACACTGGCTAC-TCGTCTCAAGGCCGATGCATG
67183747 T-CCAGACATGTCTTACACTGGCTTA-T-GTCTCAAGGCCGATGCATG
1 TCCCAGACATGTCTTACACTGGC-TACTCGTCTCAAGGCCGATGCATG
* * * *
67183792 TCCCAGGCATGTCTTACACTAGC-ACTCGTCTCTATGCCGATGCCATG
1 TCCCAGACATGTCTTACACTGGCTACTCGTCTCAAGGCCGATG-CATG
* * * ** **
67183839 TCCTAGACATGGTCTTACACTGGCT-CTCATAAT-GTGGCTAATGCATG
1 TCCCAGACAT-GTCTTACACTGGCTACTCGT-CTCAAGGCCGATGCATG
67183886 TCCCAGACATGTCTTACACT
1 TCCCAGACATGTCTTACACT
67183906 AGCTCACAAA
Statistics
Matches: 197, Mismatches: 38, Indels: 41
0.71 0.14 0.15
Matches are distributed among these distances:
42 1 0.01
43 14 0.07
44 9 0.05
45 17 0.09
46 47 0.24
47 25 0.13
48 22 0.11
49 25 0.13
50 33 0.17
51 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (47 bp):
TCCCAGACATGTCTTACACTGGCTACTCGTCTCAAGGCCGATGCATG
Found at i:67183883 original size:94 final size:91
Alignment explanation
Indices: 67183640--67183908 Score: 273
Period size: 94 Copynumber: 2.9 Consensus size: 91
67183630 CATCATCGAG
* * *
67183640 GCCGATGCCATGTCCTAGACATGGTCTTATACTAGCTCTCGCATATCCGT-GTTGATGCCATGTC
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCT--CATAT--GTGGCTGATG-CATGTC
* *
67183704 CCAGACGTGGTCTTACACTAACACATCGCTTA
61 CCAGACAT-GTCTTACACTAGCACATCGCTTA
* * * *
67183736 GCCGATG-TATGTCC-AGACAT-GTCTTACACTGGCT-T-ATGTCTCAAGGCCGATGCATGTCCC
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATGT---GGCTGATGCATGTCCC
*
67183796 AGGCATGTCTTACACTAGCAC-TCGTCTCTA
63 AGACATGTCTTACACTAGCACATCG-CT-TA
*
67183826 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCTAATGCATGTCCCA
1 -GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCAT-ATGTGGCTGATGCATGTCCCA
67183891 GACATGTCTTACACTAGC
64 GACATGTCTTACACTAGC
67183909 TCACAAAAGT
Statistics
Matches: 144, Mismatches: 16, Indels: 28
0.77 0.09 0.15
Matches are distributed among these distances:
87 1 0.01
88 3 0.02
89 19 0.13
90 14 0.10
91 12 0.08
92 7 0.05
93 18 0.12
94 52 0.36
95 7 0.05
96 9 0.06
97 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (91 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATGTGGCTGATGCATGTCCCAGA
CATGTCTTACACTAGCACATCGCTTA
Found at i:67191166 original size:42 final size:43
Alignment explanation
Indices: 67191028--67191177 Score: 137
Period size: 42 Copynumber: 3.5 Consensus size: 43
67191018 AAGATGCCAG
* * ** * *
67191028 TGCCATGTCCCAG-TCGTGGTCTTACATG-GGATCTCACATCGA
1 TGCCATATCCCAGAT-GTGGTCTTACACGAAAATCTCATATCAA
* * * * **
67191070 TGCCATATCCCAGATATGGTCTTATACGAAAATCTTATTTTGA
1 TGCCATATCCCAGATGTGGTCTTACACGAAAATCTCATATCAA
*
67191113 TGCCATGTCCCAGATGTGGTCTTACACG-AAATCTCATATCAA
1 TGCCATATCCCAGATGTGGTCTTACACGAAAATCTCATATCAA
67191155 CT-CCATATCCCAGATGTGGTCTT
1 -TGCCATATCCCAGATGTGGTCTT
67191178 CCATAATAAC
Statistics
Matches: 87, Mismatches: 18, Indels: 6
0.78 0.16 0.05
Matches are distributed among these distances:
42 52 0.60
43 35 0.40
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (43 bp):
TGCCATATCCCAGATGTGGTCTTACACGAAAATCTCATATCAA
Found at i:67196100 original size:30 final size:30
Alignment explanation
Indices: 67196066--67196130 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
67196056 CATGCTTCAA
*
67196066 ATCTCACATCTTAATTCTATTCACAATTCT
1 ATCTCACATCTTAATTCCATTCACAATTCT
67196096 ATCTCACATCTTAATTCCATTCACAATTCT
1 ATCTCACATCTTAATTCCATTCACAATTCT
67196126 A-CTCA
1 ATCTCA
67196131 TAATTTCTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 4 0.12
30 30 0.88
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (30 bp):
ATCTCACATCTTAATTCCATTCACAATTCT
Found at i:67196393 original size:23 final size:21
Alignment explanation
Indices: 67196305--67196405 Score: 87
Period size: 21 Copynumber: 4.8 Consensus size: 21
67196295 ATCAGTGTAC
*
67196305 GACACATAA-GTGCCTAAAAT
1 GACACATAAGGTGCCTAATAT
** *
67196325 GACACACGAGGTGCCTGATAT
1 GACACATAAGGTGCCTAATAT
* * * *
67196346 GACACATGAGGTACCTGATAC
1 GACACATAAGGTGCCTAATAT
*
67196367 GACACACAAGGTGCCTAAAATAT
1 GACACATAAGGTGCCT--AATAT
*
67196390 GACACATAAAGTGCCT
1 GACACATAAGGTGCCT
67196406 GATCAACAAA
Statistics
Matches: 64, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
20 7 0.11
21 40 0.62
23 17 0.27
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.19
Consensus pattern (21 bp):
GACACATAAGGTGCCTAATAT
Found at i:67196407 original size:44 final size:41
Alignment explanation
Indices: 67196305--67196408 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 41
67196295 ATCAGTGTAC
* * * * *
67196305 GACACATAAGTGCCTAAAATGACACACGAGGTGCCTGATAT
1 GACACATAAGTGCCTGATACGACACACAAGGTGCCTAATAT
* *
67196346 GACACATGAGGTACCTGATACGACACACAAGGTGCCTAAAATAT
1 GACACAT-AAGTGCCTGATACGACACACAAGGTGCCT--AATAT
67196390 GACACATAAAGTGCCTGAT
1 GACACAT-AAGTGCCTGAT
67196409 CAACAAAGCC
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
41 7 0.14
42 23 0.46
44 20 0.40
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (41 bp):
GACACATAAGTGCCTGATACGACACACAAGGTGCCTAATAT
Found at i:67197302 original size:17 final size:18
Alignment explanation
Indices: 67197272--67197305 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
67197262 AATTTCTATT
67197272 CAATTTATACCCTAATTC
1 CAATTTATACCCTAATTC
*
67197290 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
67197306 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
CAATTTATACCCTAATTC
Found at i:67197750 original size:14 final size:15
Alignment explanation
Indices: 67197726--67197754 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
67197716 GAATGGCTTC
67197726 TGCTATTCTTTCTTT
1 TGCTATTCTTTCTTT
67197741 TGCT-TTCTTTCTTT
1 TGCTATTCTTTCTTT
67197755 ATTTCATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.03, C:0.21, G:0.07, T:0.69
Consensus pattern (15 bp):
TGCTATTCTTTCTTT
Found at i:67200791 original size:43 final size:43
Alignment explanation
Indices: 67200707--67200793 Score: 124
Period size: 43 Copynumber: 2.0 Consensus size: 43
67200697 TTTTATCCTA
* *
67200707 GAAAAAAGAATTTAAAAAGAGGAGAAGATAATCTTTGGTTGTT
1 GAAAAAAGAATTTAAAAAGAGGAGAAGATAAACTATGGTTGTT
67200750 GAAAAAAGAATTTAAAAAGAGGA-AGAGATAAAC-ATGAGTTGTT
1 GAAAAAAGAATTTAAAAAGAGGAGA-AGATAAACTATG-GTTGTT
67200793 G
1 G
67200794 GATTTACCCT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
42 3 0.08
43 37 0.93
ACGTcount: A:0.49, C:0.02, G:0.24, T:0.24
Consensus pattern (43 bp):
GAAAAAAGAATTTAAAAAGAGGAGAAGATAAACTATGGTTGTT
Found at i:67208472 original size:38 final size:38
Alignment explanation
Indices: 67208430--67208502 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
67208420 GAACTCCTTT
67208430 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATTC
1 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATTC
67208468 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
67208503 AAAGGATGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (38 bp):
CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATTC
Found at i:67215576 original size:47 final size:47
Alignment explanation
Indices: 67215518--67215711 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
67215508 TTAGGACTTT
** * *
67215518 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
67215565 ATGAGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
67215612 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
67215659 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
67215706 ATGTGA
1 ATGTGA
67215712 AATATGTATG
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:67215741 original size:48 final size:48
Alignment explanation
Indices: 67215681--67215867 Score: 268
Period size: 48 Copynumber: 3.8 Consensus size: 48
67215671 TGAACATGCA
67215681 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
67215729 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
** * * *
67215777 CGTATGTGGTAAAGCTGAATGG-TCAATCTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
*
67215829 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
67215868 GGCGATCTGC
Statistics
Matches: 122, Mismatches: 11, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
47 1 0.01
48 78 0.64
49 1 0.01
50 2 0.02
51 1 0.01
52 38 0.31
53 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:67216121 original size:37 final size:37
Alignment explanation
Indices: 67216013--67216121 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
67216003 GGAAATATAT
*
67216013 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
67216050 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
67216087 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
67216122 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:67219635 original size:13 final size:13
Alignment explanation
Indices: 67219617--67219644 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
67219607 TGGTTGGCCG
67219617 AATGTTCATAGTT
1 AATGTTCATAGTT
67219630 AATGTTCATAGTT
1 AATGTTCATAGTT
67219643 AA
1 AA
67219645 GTGCTATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (13 bp):
AATGTTCATAGTT
Found at i:67219998 original size:19 final size:18
Alignment explanation
Indices: 67219974--67220010 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
67219964 AGAATTGGCC
67219974 AAATGGGCCGTAATGGGCT
1 AAATGGGCC-TAATGGGCT
*
67219993 AAATGGGCCTGATGGGCT
1 AAATGGGCCTAATGGGCT
67220011 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.24, C:0.16, G:0.38, T:0.22
Consensus pattern (18 bp):
AAATGGGCCTAATGGGCT
Found at i:67226270 original size:16 final size:16
Alignment explanation
Indices: 67226249--67226280 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
67226239 GTTGTAACGC
67226249 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
67226265 CCCAAAAATCCTGAAA
1 CCCAAAAATCCCGAAA
67226281 TTTTGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:67229919 original size:13 final size:13
Alignment explanation
Indices: 67229901--67229925 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67229891 CCAAGCACAT
67229901 GCCTGTGTCCTTG
1 GCCTGTGTCCTTG
67229914 GCCTGTGTCCTT
1 GCCTGTGTCCTT
67229926 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.32, G:0.28, T:0.40
Consensus pattern (13 bp):
GCCTGTGTCCTTG
Found at i:67235733 original size:29 final size:28
Alignment explanation
Indices: 67235685--67235739 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
67235675 ACCCGAAGTA
*
67235685 CTGATATCATGGTCCAAAGCCAAATCAG
1 CTGATATCATGGCCCAAAGCCAAATCAG
*
67235713 CTGATATTCATGGCCCGAAGCCAAATC
1 CTGATA-TCATGGCCCAAAGCCAAATC
67235740 GGTATAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (28 bp):
CTGATATCATGGCCCAAAGCCAAATCAG
Found at i:67238837 original size:25 final size:25
Alignment explanation
Indices: 67238809--67238861 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
67238799 AAGGCATAAG
67238809 CTATTCAATGAAATGTTAGTGTAAA
1 CTATTCAATGAAATGTTAGTGTAAA
67238834 CTATTCAATGAAATGTTAGTGTAAA
1 CTATTCAATGAAATGTTAGTGTAAA
67238859 CTA
1 CTA
67238862 CGAATTCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (25 bp):
CTATTCAATGAAATGTTAGTGTAAA
Found at i:67244195 original size:46 final size:46
Alignment explanation
Indices: 67244145--67244316 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
67244135 TGAGCATCCA
67244145 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
67244191 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
67244238 AACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
67244284 AGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67244317 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 57 0.54
47 28 0.27
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:67244297 original size:93 final size:93
Alignment explanation
Indices: 67244138--67244309 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
67244128 GGATGGTTGA
*
67244138 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
67244203 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
67244231 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
*
67244296 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
67244310 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67246204 original size:29 final size:28
Alignment explanation
Indices: 67246163--67246219 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 28
67246153 ATCCGAAGTA
67246163 CTGATATCATGGCCCGAAGCCAAATCAG
1 CTGATATCATGGCCCGAAGCCAAATCAG
*
67246191 CTGATATTCATGGCCTGAAGCCAAATCAG
1 CTGATA-TCATGGCCCGAAGCCAAATCAG
67246220 TATAACTCGC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (28 bp):
CTGATATCATGGCCCGAAGCCAAATCAG
Found at i:67250042 original size:34 final size:34
Alignment explanation
Indices: 67249999--67250067 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
67249989 TGACGATGGC
67249999 TTAACTTTTAGTTGAGTTTAAAGTTAAACCAATG
1 TTAACTTTTAGTTGAGTTTAAAGTTAAACCAATG
67250033 TTAACTTTTAGTTGAGTTTAAAGTTAAACCAATG
1 TTAACTTTTAGTTGAGTTTAAAGTTAAACCAATG
67250067 T
1 T
67250068 CTCAAGCTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (34 bp):
TTAACTTTTAGTTGAGTTTAAAGTTAAACCAATG
Found at i:67252044 original size:13 final size:13
Alignment explanation
Indices: 67252026--67252051 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67252016 TCGTAATAGC
67252026 TTAATTTAACTAT
1 TTAATTTAACTAT
67252039 TTAATTTAACTAT
1 TTAATTTAACTAT
67252052 CTTCAGGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
TTAATTTAACTAT
Found at i:67254502 original size:27 final size:27
Alignment explanation
Indices: 67254472--67254649 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
67254462 ATATTGAGCC
* * *
67254472 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
67254499 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
67254526 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
67254554 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
67254581 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
67254608 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
67254635 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67254650 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:67254565 original size:55 final size:55
Alignment explanation
Indices: 67254472--67254649 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
67254462 ATATTGAGCC
* * *
67254472 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
67254526 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
67254581 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
67254635 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67254650 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:67254611 original size:82 final size:81
Alignment explanation
Indices: 67254493--67254648 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
67254483 TGCTATACAA
* * *
67254493 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
67254558 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
67254575 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
67254639 CACTTAGTGC
65 CACTTAGTGC
67254649 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67262402 original size:27 final size:27
Alignment explanation
Indices: 67262372--67262549 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
67262362 ATATTGAGCC
* * *
67262372 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
67262399 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
67262426 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
67262454 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
67262481 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
67262508 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
67262535 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67262550 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:67262465 original size:55 final size:55
Alignment explanation
Indices: 67262372--67262549 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
67262362 ATATTGAGCC
* * *
67262372 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
67262426 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
67262481 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
67262535 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67262550 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:67262511 original size:82 final size:81
Alignment explanation
Indices: 67262393--67262548 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
67262383 TGCTATACAA
* * *
67262393 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
67262458 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
67262475 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
67262539 CACTTAGTGC
65 CACTTAGTGC
67262549 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67265709 original size:52 final size:52
Alignment explanation
Indices: 67265649--67265762 Score: 147
Period size: 52 Copynumber: 2.2 Consensus size: 52
67265639 GTGGCTTGGT
* * *
67265649 TGTGTGACCCCCATACCTACAAACGGTCTAGGACACGGGTGTGTAACCTAAC
1 TGTGTGACCCCCACACCTACAAACAGTCTAGGACACCGGTGTGTAACCTAAC
** * * *
67265701 TGTGTGACCCTTACACCTACACACAGTCTAGTACACCGGTGTGTGACCTAAC
1 TGTGTGACCCCCACACCTACAAACAGTCTAGGACACCGGTGTGTAACCTAAC
*
67265753 TGTGTAACCC
1 TGTGTGACCC
67265763 TAGTCAAAGA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (52 bp):
TGTGTGACCCCCACACCTACAAACAGTCTAGGACACCGGTGTGTAACCTAAC
Found at i:67265763 original size:52 final size:52
Alignment explanation
Indices: 67265663--67265763 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 52
67265653 TGACCCCCAT
* * *
67265663 ACCTACAAACGGTCTAGGACACGGGTGTGTAACCTAACTGTGTGACCCTTAC
1 ACCTACAAACAGTCTAGGACACCGGTGTGTAACCTAACTGTGTAACCCTTAC
* * *
67265715 ACCTACACACAGTCTAGTACACCGGTGTGTGACCTAACTGTGTAACCCT
1 ACCTACAAACAGTCTAGGACACCGGTGTGTAACCTAACTGTGTAACCCT
67265764 AGTCAAAGAG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (52 bp):
ACCTACAAACAGTCTAGGACACCGGTGTGTAACCTAACTGTGTAACCCTTAC
Found at i:67279891 original size:20 final size:20
Alignment explanation
Indices: 67279866--67279903 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67279856 GAATAAATCA
67279866 AAAACTTTAG-AAAATTTTAC
1 AAAAC-TTAGAAAAATTTTAC
67279886 AAAACTTAGAAAAATTTT
1 AAAACTTAGAAAAATTTT
67279904 CATAAAACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (20 bp):
AAAACTTAGAAAAATTTTAC
Found at i:67283520 original size:46 final size:46
Alignment explanation
Indices: 67283453--67283627 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
67283443 TGTAACCCGC
*
67283453 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
67283499 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
67283549 -C-TCA-CGAACTCGTACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
67283592 CCCTAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
67283628 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 60 0.57
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:67283569 original size:93 final size:93
Alignment explanation
Indices: 67283460--67283631 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
67283450 CGCCCATAAG
* *
67283460 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67283525 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
67283553 CGAACTCGTACTCAACTCAACGAGTTCGGACATTCGCATCCCTAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67283618 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
67283632 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:67292303 original size:25 final size:28
Alignment explanation
Indices: 67292251--67292304 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 28
67292241 TTATCGCTAT
* *
67292251 TATGTGTTGAATGATCGATTTTGCATAA
1 TATGTGTTGAATGATCGATTATGAATAA
67292279 TATG-GTTGAAT-AT-GATTATGAATAA
1 TATGTGTTGAATGATCGATTATGAATAA
67292304 T
1 T
67292305 GCATGTTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 11 0.46
26 2 0.08
27 7 0.29
28 4 0.17
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (28 bp):
TATGTGTTGAATGATCGATTATGAATAA
Found at i:67292455 original size:48 final size:49
Alignment explanation
Indices: 67292393--67292708 Score: 211
Period size: 48 Copynumber: 6.6 Consensus size: 49
67292383 TATGTGTGCT
67292393 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TAATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATTAATATGAGAGCC
* * * * * * *
67292441 AATGTAAGATCATGTTTGGAACATGACATCGGCAATGTAA-A-GAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-TAATATGAGAGCC
* * * * * *
67292489 AGTGTAAGACCATGTATAGGACATGGCATC-GACATTGATATGTGCA-CT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATTAATATGAG-AGCC
* * * * *
67292537 AGTGTAAGACCATGTTTGGAACATGGCATCGACCA-T-ATCATAAAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATTAAT-ATGAGAGCC
* * * *** *
67292585 AGTGTAAAACCAT-TCTGGGACATGGCATCGACC-TTGAGGCGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATTAATATGAGAGCC
* * * * ** * *
67292632 AGTGTAAGGCCATGTCTAGGACATGGTATCAGCC-TCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATTAATATGAGAGCC
* * *
67292680 AGTGCAAGACCATGTTTGGAACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
67292709 TAGTAATTCA
Statistics
Matches: 202, Mismatches: 55, Indels: 22
0.72 0.20 0.08
Matches are distributed among these distances:
46 2 0.01
47 41 0.20
48 152 0.75
49 4 0.02
50 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATTAATATGAGAGCC
Found at i:67292588 original size:96 final size:96
Alignment explanation
Indices: 67292393--67292621 Score: 252
Period size: 96 Copynumber: 2.4 Consensus size: 96
67292383 TATGTGTGCT
* * *
67292393 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TAATATGAGAGCCAATGTAAGATCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACATTGATATGAGAGCCAATGTAAGACCATGTT
* * *
67292457 TGGAACATGACATCGGCAATGTAAAGAGAGTC
65 TGGAACATGACATCGACAATATAAAGAGAGCC
* * * * *
67292489 AGTGTAAGACCATGTATAGGACATGGCATCGACATTGATATGTGCA-CTAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGAG-AGCCAATGTAAGACCATGTT
* *
67292553 TGGAACATGGCATCGACCATATCATAA-A-AGCC
65 TGGAACATGACATCGACAATAT-A-AAGAGAGCC
* *
67292585 AGTGTAAAACCAT-TCTGGGACATGGCATCGACCTTGA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGA
67292622 GGCGAGAGCT
Statistics
Matches: 112, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
95 24 0.21
96 83 0.74
97 3 0.03
98 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGAGAGCCAATGTAAGACCATGTTT
GGAACATGACATCGACAATATAAAGAGAGCC
Found at i:67298501 original size:45 final size:45
Alignment explanation
Indices: 67298437--67298527 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
67298427 AAAAAAAGTC
*
67298437 CTTAGATTTGGTAAGAAAGGAAAATTAAGTCCACGTTTTGTTGGA
1 CTTAGATTTGGTAAGAAAGGAAAATTAAGTCAACGTTTTGTTGGA
67298482 CTTAGATTTGGTAAGAAAGGAAAATTAAGTCAACGTTTTGTTGGA
1 CTTAGATTTGGTAAGAAAGGAAAATTAAGTCAACGTTTTGTTGGA
67298527 C
1 C
67298528 CTTATGAGGT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (45 bp):
CTTAGATTTGGTAAGAAAGGAAAATTAAGTCAACGTTTTGTTGGA
Found at i:67300160 original size:48 final size:48
Alignment explanation
Indices: 67300096--67300200 Score: 158
Period size: 48 Copynumber: 2.2 Consensus size: 48
67300086 CCATCTCTGG
*
67300096 ACATGGCATCGGCCACAAT-ATGAGAACCAGCGTAAGACAATGTTTGGA
1 ACATGGCATCGACCAC-ATCATGAGAACCAGCGTAAGACAATGTTTGGA
* * *
67300144 ACATGGCATCGACCACATCATGAGAGCCAGTGTAAGACCATGTTTGGA
1 ACATGGCATCGACCACATCATGAGAACCAGCGTAAGACAATGTTTGGA
67300192 ACATGGCAT
1 ACATGGCAT
67300201 TAGCAATTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 2 0.04
48 50 0.96
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (48 bp):
ACATGGCATCGACCACATCATGAGAACCAGCGTAAGACAATGTTTGGA
Found at i:67303701 original size:20 final size:20
Alignment explanation
Indices: 67303676--67303713 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67303666 GACTAAACCA
* *
67303676 AAAACTTTAGAAAATTTTAC
1 AAAACTTAAAAAAATTTTAC
67303696 AAAACTTAAAAAAATTTT
1 AAAACTTAAAAAAATTTT
67303714 CATTAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAACTTAAAAAAATTTTAC
Found at i:67306540 original size:42 final size:42
Alignment explanation
Indices: 67306493--67306602 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 42
67306483 TAAGATGCCA
* *
67306493 ATGCCATATCCTAGATATGGTCTTACATG-GGATCACATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAGG-TCACATATCG
* * * *
67306535 ATGCCAATAGCCCAGCTATGGTCTTACACGATGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAGGTCACATATCG
*
67306578 ATGCCATGTCCCAGATATGGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
67306603 TACAAAGTCT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 22 0.39
43 34 0.60
44 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAGGTCACATATCG
Found at i:67306613 original size:42 final size:42
Alignment explanation
Indices: 67306528--67306689 Score: 146
Period size: 42 Copynumber: 3.8 Consensus size: 42
67306518 CATGGGATCA
* * * *
67306528 CATATCGATGCCAATAG-CCCAGCTATGGTCTTACACGATGTCT
1 CATATCGATGCC-AT-GTCCCAGATATGGTCTTATACAAAGTCT
67306571 CATATCGATGCCATGTCCCAGATATGGTCTTATACAAAGTCT
1 CATATCGATGCCATGTCCCAGATATGGTCTTATACAAAGTCT
* * * * ** * * *
67306613 CATTTTCAAAGCCATGTCTCAGACGTGGTCTTAAACAAAATCG
1 CA-TATCGATGCCATGTCCCAGATATGGTCTTATACAAAGTCT
** *
67306656 CATGCCGATGCCATATCCCAGATATGGTCTTATA
1 CATATCGATGCCATGTCCCAGATATGGTCTTATA
67306690 TGGAATCTCA
Statistics
Matches: 95, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
41 1 0.01
42 49 0.52
43 45 0.47
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (42 bp):
CATATCGATGCCATGTCCCAGATATGGTCTTATACAAAGTCT
Found at i:67310129 original size:43 final size:43
Alignment explanation
Indices: 67310068--67310170 Score: 161
Period size: 43 Copynumber: 2.4 Consensus size: 43
67310058 TTTTATCCTA
67310068 GAAAGAAGAATTTAAAAAGAGGAGAAGATAATCTTAGATTGTC
1 GAAAGAAGAATTTAAAAAGAGGAGAAGATAATCTTAGATTGTC
* * * *
67310111 GAAAGAAGAATTTAAAAAGAGGAGAGGATAATCTTTGGTTGTT
1 GAAAGAAGAATTTAAAAAGAGGAGAAGATAATCTTAGATTGTC
*
67310154 GAAAAAAGAATTTAAAA
1 GAAAGAAGAATTTAAAA
67310171 TGATGAAGAG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.50, C:0.03, G:0.23, T:0.24
Consensus pattern (43 bp):
GAAAGAAGAATTTAAAAAGAGGAGAAGATAATCTTAGATTGTC
Found at i:67323140 original size:16 final size:17
Alignment explanation
Indices: 67323111--67323144 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
67323101 TGAAAGAAAT
*
67323111 AAAATAAAACAAAAAGA
1 AAAAGAAAACAAAAAGA
67323128 AAAAGAAAA-AAAAAGA
1 AAAAGAAAACAAAAAGA
67323144 A
1 A
67323145 GGTGCAGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.85, C:0.03, G:0.09, T:0.03
Consensus pattern (17 bp):
AAAAGAAAACAAAAAGA
Found at i:67336799 original size:24 final size:24
Alignment explanation
Indices: 67336765--67336859 Score: 118
Period size: 24 Copynumber: 3.9 Consensus size: 24
67336755 AGCTTATTGC
*
67336765 TCAGCTAAATAGAGCTTACCGTTT
1 TCAGCTCAATAGAGCTTACCGTTT
*
67336789 TCAGCTCAATAGAGCTTACCATTT
1 TCAGCTCAATAGAGCTTACCGTTT
* *
67336813 TCTGCTCAATAGAGCTTACTGTTT
1 TCAGCTCAATAGAGCTTACCGTTT
**
67336837 ATCAGCTCAGGAGGAGCTTACCG
1 -TCAGCTCAATA-GAGCTTACCG
67336860 ACCAAGACTC
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
24 43 0.72
25 8 0.13
26 9 0.15
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (24 bp):
TCAGCTCAATAGAGCTTACCGTTT
Found at i:67342880 original size:49 final size:47
Alignment explanation
Indices: 67342722--67343070 Score: 536
Period size: 47 Copynumber: 7.3 Consensus size: 47
67342712 TCAGAGACAA
67342722 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* * * *
67342769 ACTTTCACATTCATCATATCGGCTATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
67342816 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
67342865 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
* *
67342914 ACTTTTACATTTATCACATTGGCCATTCGGCCTTATCACATATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
*
67342963 ACTTTCACATTCATCACTTTGGCCATTCGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* * *
67343010 ACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
67343057 ACTTTCACATTCAT
1 ACTTTCACATTCAT
67343071 TCAAATATAC
Statistics
Matches: 283, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 145 0.51
49 138 0.49
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.36
Consensus pattern (47 bp):
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
Found at i:67346969 original size:40 final size:40
Alignment explanation
Indices: 67346929--67347554 Score: 1045
Period size: 40 Copynumber: 15.7 Consensus size: 40
67346919 TGATTACTCT
* * * * *
67346929 TCGGGACCTAGCTCGGATATAACACCAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* ** * *
67346969 TTGGGGTTTAGCACGGATATATCACTAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
67347009 TCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
67347049 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
67347089 TCGGGACTTAGCCCGGATATACCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
67347129 TCGGGACTTAGCCCGGATGTATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
67347169 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
67347209 TCGGGACTTAGCCCGGATGTATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
67347249 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
67347289 TCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
67347329 TCGGGACTTAGCCCAGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* * *
67347369 TCGGGACTTAGCCCGGATATACCATTAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
67347409 TCGGGACTTAGCCTGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
67347449 TCGAGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
67347489 TCGGGACTTAGCCCGGATATATTACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
67347529 TCGGGACTTAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
67347555 CTCAATTCTC
Statistics
Matches: 548, Mismatches: 38, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 548 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:67349083 original size:47 final size:47
Alignment explanation
Indices: 67349005--67349556 Score: 847
Period size: 47 Copynumber: 11.6 Consensus size: 47
67348995 CCCTTCGGGA
* * * * * *
67349005 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67349052 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67349099 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67349146 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67349193 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67349240 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67349289 CTTATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67349336 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67349383 CTTATCACATATATATACACTTTCACATTCATC-CATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67349431 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
* *
67349480 CTTATCACATATATACACTTTCACATTCATCATATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67349527 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
67349557 TCAAATATAC
Statistics
Matches: 468, Mismatches: 30, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 332 0.71
48 46 0.10
49 89 0.19
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67349318 original size:143 final size:141
Alignment explanation
Indices: 67349005--67349556 Score: 863
Period size: 143 Copynumber: 3.9 Consensus size: 141
67348995 CCCTTCGGGA
* * * * * ** * *
67349005 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACAC
*
67349070 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
* *
67349135 GGCCATTAGGA
131 GGCCATTCGGC
*
67349146 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAAGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACAC
67349211 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
67349276 TTGGCCATTCGGC
129 TTGGCCATTCGGC
* * *
67349289 CTTATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACAC
67349354 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC-CA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
67349418 TTGGCCATTCGGC
129 TTGGCCATTCGGC
* *
67349431 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATAC
* *
67349496 ACTTTCACATTCATCATATCGGTCATTAGGCCTTATCACATATATACACTTTCACATTCAT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
67349557 TCAAATATAC
Statistics
Matches: 385, Mismatches: 22, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
141 92 0.24
142 45 0.12
143 161 0.42
144 87 0.23
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
GGCCATTCGGC
Found at i:67354164 original size:21 final size:21
Alignment explanation
Indices: 67354113--67354175 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 21
67354103 TCAGCTCCAA
** *
67354113 TCAGCTCACTTGAACTCG-TT
1 TCAGCTCGTTTGAGCTCGATT
*
67354133 TCAGCTTGTTTGAGCTCGATT
1 TCAGCTCGTTTGAGCTCGATT
* *
67354154 TTAGCTCGTTTCAGCTC-ATT
1 TCAGCTCGTTTGAGCTCGATT
67354174 TC
1 TC
67354176 TTTTCTTTTA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
20 18 0.53
21 16 0.47
ACGTcount: A:0.16, C:0.25, G:0.17, T:0.41
Consensus pattern (21 bp):
TCAGCTCGTTTGAGCTCGATT
Found at i:67359263 original size:26 final size:26
Alignment explanation
Indices: 67359234--67359283 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
67359224 ATATTTTTAA
*
67359234 TATTTATATTATAAT-AATTATATATT
1 TATTTATA-TAAAATAAATTATATATT
*
67359260 TATTTTTATAAAATAAATTATATA
1 TATTTATATAAAATAAATTATATA
67359284 AATGTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (26 bp):
TATTTATATAAAATAAATTATATATT
Found at i:67359821 original size:3 final size:3
Alignment explanation
Indices: 67359813--67359866 Score: 90
Period size: 3 Copynumber: 18.0 Consensus size: 3
67359803 TTTTTAAGTG
* *
67359813 CCT CCT CCT CTT CCT CCT CCT CCT CTT CCT CCT CCT CCT CCT CCT CCT
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
67359861 CCT CCT
1 CCT CCT
67359867 TCACTTAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (3 bp):
CCT
Found at i:67362050 original size:14 final size:15
Alignment explanation
Indices: 67362031--67362068 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
67362021 TTAAAGTTTT
67362031 TTTAAAAAAT-GGTA
1 TTTAAAAAATCGGTA
* *
67362045 TTTAAAATATCGTTA
1 TTTAAAAAATCGGTA
67362060 TTTAAAAAA
1 TTTAAAAAA
67362069 AATTTAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.50, C:0.03, G:0.08, T:0.39
Consensus pattern (15 bp):
TTTAAAAAATCGGTA
Found at i:67369145 original size:46 final size:47
Alignment explanation
Indices: 67369076--67369407 Score: 517
Period size: 47 Copynumber: 7.1 Consensus size: 47
67369066 GAAATGATAG
67369076 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67369123 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
67369171 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
67369218 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67369265 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67369311 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * * *
67369358 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67369404 TAAG
1 TAAG
67369408 TCCCGAAGGG
Statistics
Matches: 267, Mismatches: 13, Indels: 10
0.92 0.04 0.03
Matches are distributed among these distances:
46 107 0.40
47 114 0.43
48 22 0.08
49 24 0.09
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:67369302 original size:93 final size:93
Alignment explanation
Indices: 67369076--67369407 Score: 506
Period size: 93 Copynumber: 3.5 Consensus size: 93
67369066 GAAATGATAG
*
67369076 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATG
67369141 TGATGAATGTGAAAGTGTATATATATGTGA
66 TGATGAATGTGAAAGTG--TATATATGTGA
*
67369171 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGAT
67369236 GTGATGAATGTGAAAGTGTATATATGTGA
65 GTGATGAATGTGAAAGTGTATATATGTGA
67369265 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGAT
67369329 GTGATGAATGTGAAAGTGTATATATGTGA
65 GTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * * * *
67369358 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
67369408 TCCCGAAGGG
Statistics
Matches: 222, Mismatches: 13, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
92 6 0.03
93 114 0.51
94 22 0.10
95 56 0.25
96 24 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (93 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATG
TGATGAATGTGAAAGTGTATATATGTGA
Found at i:67369353 original size:142 final size:141
Alignment explanation
Indices: 67369076--67369407 Score: 524
Period size: 142 Copynumber: 2.4 Consensus size: 141
67369066 GAAATGATAG
*
67369076 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATG
67369141 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
66 TGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
67369206 GTATATGTGTGA
130 GTATATGTGTGA
67369218 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATG
*
67369283 TGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 TGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
*
67369347 TATATATGTGA
131 TATATGTGTGA
** * * * * * * * *
67369358 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
67369408 TCCCGAAGGG
Statistics
Matches: 177, Mismatches: 13, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
139 40 0.23
140 56 0.32
142 81 0.46
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGCCGATG
TGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
TATATGTGTGA
Found at i:67369582 original size:37 final size:37
Alignment explanation
Indices: 67369526--67369604 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
67369516 CCGAGCTCTA
* *
67369526 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
67369563 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67369600 AAGAC
1 AAGAC
67369605 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Done.