Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 204 of 352
Found at i:67371722 original size:17 final size:17
Alignment explanation
Indices: 67371702--67371734 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
67371692 TAGAATTGGG
*
67371702 TTGAGAAGTTAATTTAA
1 TTGAGAAATTAATTTAA
67371719 TTGAGAAATTAATTTA
1 TTGAGAAATTAATTTA
67371735 GTTAAATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (17 bp):
TTGAGAAATTAATTTAA
Found at i:67373104 original size:58 final size:57
Alignment explanation
Indices: 67372986--67373108 Score: 180
Period size: 58 Copynumber: 2.1 Consensus size: 57
67372976 CAAGAGGATG
*
67372986 ATGGGCAAAACATTCATGAAACATTGTTGTAGTTAATGGAAAATAAAATAAGACAGC
1 ATGGGCAAAACATTCATGAAACATTGTTGTAGTTAATGGAAAATAAAATAAGAAAGC
67373043 ATGGGCAAAACATGTCATGAAACA-TGTTGT-GTTAATCGGACAGAATAAAATAA-AAAGC
1 ATGGGCAAAACAT-TCATGAAACATTGTTGTAGTTAAT-GGA-A-AATAAAATAAGAAAGC
67373101 ATGGGCAA
1 ATGGGCAA
67373109 TAAACTAATA
Statistics
Matches: 61, Mismatches: 1, Indels: 7
0.88 0.01 0.10
Matches are distributed among these distances:
56 6 0.10
57 22 0.36
58 23 0.38
59 10 0.16
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (57 bp):
ATGGGCAAAACATTCATGAAACATTGTTGTAGTTAATGGAAAATAAAATAAGAAAGC
Found at i:67374665 original size:50 final size:49
Alignment explanation
Indices: 67374589--67375050 Score: 234
Period size: 48 Copynumber: 9.6 Consensus size: 49
67374579 TTTTGAACTA
67374589 AATGTGAAAGTG-AT-TAATGTGATAAGGCCTAATGG-CAATGTGGATG
1 AATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCAATGTGGATG
*
67374635 AATGTGAAAGTCGTATATATATGTGATAAGGCCTAATGGCCGATGT-GATGG
1 AATGTGAAAGT-GTATATA-ATGTGATAAGGCCTAATGGCCAATGTGGAT-G
* *
67374686 AA-GTGAAAGTGTATATAATGTGATAAAGGTCGAATGGCCAATGTGGATG
1 AATGTGAAAGTGTATATAATGTGAT-AAGGCCTAATGGCCAATGTGGATG
* *
67374735 AATGTGAAAAGTGCTATATACTATGTGATAAGGCC-GATGG-CAATGT--ATC
1 AATGTG-AAAGTG-TATATA--ATGTGATAAGGCCTAATGGCCAATGTGGATG
* * * *
67374784 AATATGAACCATGTGTATGT-ATGGTGATAAGGCCGAAT-GCGCAATG-GAATG
1 AATGTGAA--A-GTGTATATAAT-GTGATAAGGCCTAATGGC-CAATGTGGATG
* * * * *
67374835 AATGAGAACA-TGCATAT-ATGAGATCAAGGCCGAATGACCAATGT-GATG
1 AATGTGAA-AGTGTATATAATGTGAT-AAGGCCTAATGGCCAATGTGGATG
* * *
67374883 AATGT-AACACATGT-T-T-GTGTGATCAAGGCCGAATGGCCACA--TGGATG
1 AATGTGAA-A-GTGTATATAATGTGAT-AAGGCCTAATGGCCA-ATGTGGATG
* * *
67374930 AAT-TGAAA-TGCA-AT-AT-AGATAA-G-CGAATGGCGCCAAATGT-GATG
1 AATGTGAAAGTGTATATAATGTGATAAGGCCTAAT-G-GCC-AATGTGGATG
* * *
67374974 AATGTGAAAGCGTA-AT-ATGTGATAAGG-CGAATGGCCAAATGCATTGATG
1 AATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCC-AATG--TGGATG
* *
67375023 -GTGTGGAAGTGTATATAAATGTGATAAG
1 AATGTGAAAGTGTATAT-AATGTGATAAG
67375051 TCCCGATGGC
Statistics
Matches: 337, Mismatches: 32, Indels: 89
0.74 0.07 0.19
Matches are distributed among these distances:
41 5 0.01
42 2 0.01
43 6 0.02
44 13 0.04
45 8 0.02
46 28 0.08
47 47 0.14
48 71 0.21
49 46 0.14
50 48 0.14
51 41 0.12
52 10 0.03
53 5 0.01
54 7 0.02
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.26
Consensus pattern (49 bp):
AATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCAATGTGGATG
Found at i:67374724 original size:49 final size:50
Alignment explanation
Indices: 67374589--67374769 Score: 232
Period size: 50 Copynumber: 3.6 Consensus size: 50
67374579 TTTTGAACTA
67374589 AATGTGAAAGTG-AT-TA-ATGTGATAAGGCCTAATGG-CAATGTGGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGGATG
*
67374635 AATGTGAAAGTCGTATATATATGTGATAAGGCCTAATGGCCGATGT-GATGG
1 AATGTGAAAGT-GTATATATATGTGATAAGGCCTAATGGCCAATGTGGAT-G
* *
67374686 AA-GTGAAAGTGTATATA-ATGTGATAAAGGTCGAATGGCCAATGTGGATG
1 AATGTGAAAGTGTATATATATGTGAT-AAGGCCTAATGGCCAATGTGGATG
67374735 AATGTGAAAAGTGCTATATACTATGTGATAAGGCC
1 AATGTG-AAAGTG-TATATA-TATGTGATAAGGCC
67374770 GATGGCAATG
Statistics
Matches: 117, Mismatches: 5, Indels: 19
0.83 0.04 0.13
Matches are distributed among these distances:
46 11 0.09
47 1 0.01
48 9 0.08
49 28 0.24
50 36 0.31
51 14 0.12
52 6 0.05
53 5 0.04
54 7 0.06
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (50 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGGATG
Found at i:67374838 original size:100 final size:98
Alignment explanation
Indices: 67374593--67374838 Score: 258
Period size: 101 Copynumber: 2.5 Consensus size: 98
67374583 GAACTAAATG
*
67374593 TGAAAGTG-AT-TAATGTGATAAGGCCTAATGGCAATGTGGATGAATGTGAAAGTCGTATATATA
1 TGAAAGTGTATATAATGTGATAAGGCCGAATGGCAATGTGGATGAATGTGAAAGTCGTATATATA
* * *
67374656 TGTGATAAGGCCTAATGGCCGATGTGATGGAAG
66 TGTGATAAGGCCTAATGGCCAATGTGATGCAAA
*
67374689 TGAAAGTGTATATAATGTGATAAAGGTCGAATGGCCAATGTGGATGAATGTGAAAAGT-GCTATA
1 TGAAAGTGTATATAATGTGAT-AAGGCCGAATGG-CAATGTGGATGAATGTG-AAAGTCG-TATA
*
67374753 TACTATGTGATAAGGCC-GATGG-CAATGT-AT-CAATA
62 TA-TATGTGATAAGGCCTAATGGCCAATGTGATGCAA-A
* *
67374788 TGAACCATGTGTATGT-ATGGTGATAAGGCCGAATGCGCAATG-GAATGAATG
1 TGAA--A-GTGTATATAAT-GTGATAAGGCCGAATG-GCAATGTGGATGAATG
67374839 AGAACATGCA
Statistics
Matches: 128, Mismatches: 9, Indels: 22
0.81 0.06 0.14
Matches are distributed among these distances:
96 8 0.06
97 2 0.02
98 11 0.09
99 16 0.12
100 31 0.24
101 33 0.26
102 27 0.21
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (98 bp):
TGAAAGTGTATATAATGTGATAAGGCCGAATGGCAATGTGGATGAATGTGAAAGTCGTATATATA
TGTGATAAGGCCTAATGGCCAATGTGATGCAAA
Found at i:67375006 original size:48 final size:45
Alignment explanation
Indices: 67374900--67375008 Score: 111
Period size: 44 Copynumber: 2.4 Consensus size: 45
67374890 CACATGTTTG
*
67374900 TGTGATCAAGGCCGAAT-G-GCCACATGGATGAATTGAAATGCAATA
1 TGTGAT-AAGG-CGAATGGCGCCAAATGGATGAATTGAAATGCAATA
*
67374945 T-AGATAA-GCGAATGGCGCCAAATGTGATGAATGTGAAA-GCGTAATA
1 TGTGATAAGGCGAATGGCGCCAAATG-GATGAAT-TGAAATGC--AATA
67374991 TGTGATAAGGCGAATGGC
1 TGTGATAAGGCGAATGGC
67375009 CAAATGCATT
Statistics
Matches: 53, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
41 5 0.09
42 2 0.04
43 9 0.17
44 12 0.23
45 6 0.11
46 5 0.09
47 5 0.09
48 9 0.17
ACGTcount: A:0.36, C:0.13, G:0.29, T:0.22
Consensus pattern (45 bp):
TGTGATAAGGCGAATGGCGCCAAATGGATGAATTGAAATGCAATA
Found at i:67378555 original size:46 final size:47
Alignment explanation
Indices: 67378430--67378875 Score: 512
Period size: 46 Copynumber: 9.7 Consensus size: 47
67378420 GCCATCGGGA
* * * * *
67378430 CTTATAACATTTATACACTTCCACATCCATCA-ATTGGCCTTTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
67378476 C-TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67378522 CTTATCTCATATATGCA-TGTTCACATTCA-CACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
67378568 CTTATCACACATACACA-TGTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
67378615 CTTATCTCATATATGCA-TGTTCTCATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
67378662 C-TATCACACATA-ACA-TGTT-ATA-TCA-CACATTCGCCATTCGG-
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
67378703 CTTATCACAAATATATACACTTTCACATTCATCACATTGGCCATTC-GA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67378751 CTTATCACATATATACACTTTCACATTCATCACA-TCGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67378797 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGG-
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67378845 CTTATCACATATA-ACACTTTCACATTTATCA
1 CTTATCACATATATACACTTTCACATTCATCA
67378876 AATATACTTC
Statistics
Matches: 351, Mismatches: 32, Indels: 35
0.84 0.08 0.08
Matches are distributed among these distances:
41 1 0.00
42 21 0.06
43 3 0.01
44 5 0.01
45 61 0.17
46 110 0.31
47 85 0.24
48 55 0.16
49 10 0.03
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:67378826 original size:94 final size:92
Alignment explanation
Indices: 67378430--67378875 Score: 509
Period size: 93 Copynumber: 4.8 Consensus size: 92
67378420 GCCATCGGGA
* * * * * *
67378430 CTTATAACATTTATACACTTCCACATCCATCA-ATTGGCCTTTCGGCCTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCTTATCACATATA-ACACT
*
67378494 TTCACATTCATCACATTGGCCATTCGGC
65 TTCACATTCATCACATTCGCCATTCGGC
* * *
67378522 CTTATCTCATATATGCA-TGTTCACATTCA-CACATTGGCCATTCGGCCTTATCACACAT-ACAC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGG-CTTATCACATATAACAC
* *
67378584 ATGTTCACATTCATCACATTGGTCATTCGGC
64 -T-TTCACATTCATCACATTCGCCATTCGGC
* * * * *
67378615 CTTATCTCATATATGCA-TGTTCTCATTCATCACATTGGCCATTCGGCCTATCACACATAACA-T
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCTTATCACATATAACACT
*
67378678 GTT-ATA-TCA-CACATTCGCCATTCGG-
65 -TTCACATTCATCACATTCGCCATTCGGC
*
67378703 CTTATCACAAATATATACACTTTCACATTCATCACATTGGCCATTCGACTTATCACATATATACA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCTTATCACATATA-ACA
*
67378768 CTTTCACATTCATCACA-TCGCCATTAGGC
63 CTTTCACATTCATCACATTCGCCATTCGGC
*
67378797 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCTTATCACATATAACAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCTTATCACATATAACAC
*
67378862 TTTCACATTTATCA
64 TTTCACATTCATCA
67378876 AATATACTTC
Statistics
Matches: 311, Mismatches: 27, Indels: 31
0.84 0.07 0.08
Matches are distributed among these distances:
88 7 0.02
89 14 0.05
90 47 0.15
91 15 0.05
92 41 0.13
93 106 0.34
94 81 0.26
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (92 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCTTATCACATATAACACTT
TCACATTCATCACATTCGCCATTCGGC
Found at i:67380228 original size:11 final size:12
Alignment explanation
Indices: 67380207--67380244 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
67380197 TCATGAGAGC
67380207 TTTTCTCTTCTTT
1 TTTTCT-TTCTTT
67380220 TTTT-TTTCTTT
1 TTTTCTTTCTTT
67380231 TTTTCTTT-TTT
1 TTTTCTTTCTTT
67380242 TTT
1 TTT
67380245 GGTCATGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 16 0.67
12 4 0.17
13 4 0.17
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (12 bp):
TTTTCTTTCTTT
Found at i:67380379 original size:52 final size:55
Alignment explanation
Indices: 67380309--67380423 Score: 200
Period size: 52 Copynumber: 2.1 Consensus size: 55
67380299 CTTATTTTTA
67380309 TTGCCCATGCTTCTTATTTTATTCTCCATTAACACAA-AT-TTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTCCATTAACACAACATGTTTCATGACATGTT
*
67380362 TTGCCCATG-TTCTTATTTTATTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTCCATTAACACAACATGTTTCATGACATGTT
67380416 TTGCCCAT
1 TTGCCCAT
67380424 CATCCCTTGT
Statistics
Matches: 59, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
52 26 0.44
53 11 0.19
54 22 0.37
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (55 bp):
TTGCCCATGCTTCTTATTTTATTCTCCATTAACACAACATGTTTCATGACATGTT
Found at i:67387200 original size:39 final size:39
Alignment explanation
Indices: 67387096--67387230 Score: 143
Period size: 39 Copynumber: 3.5 Consensus size: 39
67387086 ACCATACGGA
* * *
67387096 CTAAGATCCGAAGGCATTTGTGCGAGATACTAATTTCGGG
1 CTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGG
* *
67387136 CTAAGCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGG
1 CTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGG
* *
67387175 TTAAGTCCG-AGGCATTTGCTGCGAGTTAGT-AA-CCGGG
1 CTAAGTCCGAAGGCATTTG-TGCGAGTTACTAAATCCGGG
*
67387212 C-ATGTCCAGAAGGCATTTG
1 CTAAGTCC-GAAGGCATTTG
67387231 AACGAGTAGC
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
36 5 0.06
37 6 0.07
38 19 0.23
39 46 0.57
40 5 0.06
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
CTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGG
Found at i:67389114 original size:31 final size:31
Alignment explanation
Indices: 67389054--67389116 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
67389044 CCTTTTCAGA
* *
67389054 TTTCATATTTCATACACTGGGTCGCAAGCTT
1 TTTCATATTTCATACACTAGGCCGCAAGCTT
*
67389085 TTTCATATTTCATATTACTAGGCCG-AAGCTT
1 TTTCATATTTCATA-CACTAGGCCGCAAGCTT
67389116 T
1 T
67389117 ACTCGTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 21 0.75
32 7 0.25
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATACACTAGGCCGCAAGCTT
Found at i:67389505 original size:19 final size:19
Alignment explanation
Indices: 67389450--67389511 Score: 90
Period size: 19 Copynumber: 3.2 Consensus size: 19
67389440 TGCATTATGA
67389450 ATAC-ATCATGTGCATATC
1 ATACTATCATGTGCATATC
*
67389468 ATACATATCAATCTGCATATC
1 ATAC-TATC-ATGTGCATATC
67389489 ATACTATCATGTGCATATC
1 ATACTATCATGTGCATATC
67389508 ATAC
1 ATAC
67389512 AATCCATGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.10
19 14 0.36
20 7 0.18
21 14 0.36
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (19 bp):
ATACTATCATGTGCATATC
Found at i:67392067 original size:29 final size:27
Alignment explanation
Indices: 67391983--67392069 Score: 99
Period size: 29 Copynumber: 3.3 Consensus size: 27
67391973 AAATGAATGC
* *
67391983 CTAAGTGTGCGA--TGAC-AGGCGGCA
1 CTAAGTGTGCGAGTTGACTATGTGGCA
*
67392007 CTAAGTGTGCGAGTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTGACTATGTGGCA
*
67392034 CTAAGTGTGGCGAGTTGATTAATGTGGCA
1 CTAAGTGT-GCGAGTTGACT-ATGTGGCA
67392063 CTAAGTG
1 CTAAGTG
67392070 CGATTGATTA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.23
26 4 0.08
27 13 0.25
28 10 0.19
29 14 0.26
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.26
Consensus pattern (27 bp):
CTAAGTGTGCGAGTTGACTATGTGGCA
Found at i:67408768 original size:26 final size:25
Alignment explanation
Indices: 67408671--67408778 Score: 114
Period size: 25 Copynumber: 4.4 Consensus size: 25
67408661 CTGGAGGCCT
*
67408671 AGCCTCTTTTAAT-AACTGGGG-AAA
1 AGCC-CTTTTGATAAACTGGGGCAAA
67408695 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* * * *
67408720 TGTCCTTTTAATAAACTGAGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
67408745 AGCCCTTTTCGGTAAACTGGGGC-AT
1 AGCCCTTTT-GATAAACTGGGGCAAA
67408770 AGCCCTTTT
1 AGCCCTTTT
67408779 TGCACTTCCT
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
23 7 0.10
24 12 0.17
25 41 0.59
26 10 0.14
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:67417306 original size:37 final size:37
Alignment explanation
Indices: 67417234--67417306 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 37
67417224 TATTACGAAG
* * *
67417234 TCTTACCCGGACATAATCTCCACACCAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACCAAGTCATCGGA
**
67417271 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 TCTTACCCGGACAAAATCCCCACACCAAGTCATCGG
67417307 GGCTTTAGAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.29, C:0.34, G:0.15, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACCAAGTCATCGGA
Found at i:67417604 original size:49 final size:49
Alignment explanation
Indices: 67417430--67417923 Score: 846
Period size: 49 Copynumber: 10.3 Consensus size: 49
67417420 CCCTTCGGGA
* * * *
67417430 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67417477 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67417524 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67417571 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67417620 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67417669 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67417718 CTTATCACATATATATACACTTTCACATTCATCACATCGCCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67417767 CTTATCACATAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67417816 CTTATCAC--ATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67417863 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67417910 CTTATCTCATATAT
1 CTTATCACATATAT
67417924 GCATGTTCAC
Statistics
Matches: 430, Mismatches: 11, Indels: 10
0.95 0.02 0.02
Matches are distributed among these distances:
46 1 0.00
47 185 0.43
49 244 0.57
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67421870 original size:40 final size:40
Alignment explanation
Indices: 67421826--67422257 Score: 684
Period size: 40 Copynumber: 10.8 Consensus size: 40
67421816 CCAGCATGAT
* * * * *
67421826 TGCTCTTCGAGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** * *
67421866 TGCTCTTCGGGGTTTAGCACGGATATATCACTAACACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
67421906 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
67421946 TGCTCCTCGGGACCTAGCCCTGATATATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
67421986 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
67422026 TGCTATTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
67422066 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
67422106 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
67422146 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
67422186 TGCTCTTCGGGACATAGCCCGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
67422226 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
67422258 CTCAATTGTC
Statistics
Matches: 359, Mismatches: 33, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 359 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:67423535 original size:37 final size:37
Alignment explanation
Indices: 67423475--67423552 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
67423465 TATTACGAAG
* * *
67423475 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
67423512 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
67423549 TCTT
1 TCTT
67423553 TAGAGCTCAG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:67423845 original size:49 final size:47
Alignment explanation
Indices: 67423671--67424181 Score: 871
Period size: 47 Copynumber: 10.7 Consensus size: 47
67423661 CCCTTCGGGA
* * * * *
67423671 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67423718 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67423765 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67423812 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67423861 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67423910 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67423957 CTTATCACATATATATACACTTTCACATTCATCACATCGCCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67424006 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67424053 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67424100 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67424147 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
67424182 AGAATCCTAA
Statistics
Matches: 449, Mismatches: 10, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
46 1 0.00
47 306 0.68
49 142 0.32
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67423868 original size:96 final size:94
Alignment explanation
Indices: 67423671--67424181 Score: 871
Period size: 96 Copynumber: 5.4 Consensus size: 94
67423661 CCCTTCGGGA
* * * * *
67423671 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
67423736 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
67423765 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
67423830 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
67423861 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67423926 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
67423957 CTTATCACATATATATACACTTTCACATTCATCACATCGCCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67424022 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
67424053 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
67424118 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
67424147 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
67424182 AGAATCCTAA
Statistics
Matches: 402, Mismatches: 10, Indels: 10
0.95 0.02 0.02
Matches are distributed among these distances:
93 1 0.00
94 165 0.41
96 189 0.47
98 47 0.12
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:67434806 original size:26 final size:28
Alignment explanation
Indices: 67434777--67434830 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
67434767 AATACAATCA
*
67434777 TATATCATA-GGGCATAATAGT-ATTTT
1 TATAACATAGGGGCATAATAGTCATTTT
67434803 TATAACATAGGGGCATAATAGTCATTTT
1 TATAACATAGGGGCATAATAGTCATTTT
67434831 ATCTATTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 8 0.32
27 12 0.48
28 5 0.20
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (28 bp):
TATAACATAGGGGCATAATAGTCATTTT
Found at i:67441441 original size:40 final size:40
Alignment explanation
Indices: 67441357--67441540 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
67441347 TTGAATGCTG
* * * *
67441357 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
67441396 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
67441437 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
*
67441477 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
67441517 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67441541 GAATGAGTTA
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 2 0.02
40 112 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:67441494 original size:80 final size:81
Alignment explanation
Indices: 67441357--67441537 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
67441347 TTGAATGCTG
* * *
67441357 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
*
67441421 TGTGCGAGTTATT-AAT
66 TGTGCGAGTT-TTAAAA
**
67441437 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
67441498 ATTTGTGCGAGTTTTAAAA
63 ATTTGTGCGAGTTTTAAAA
67441517 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
67441538 ATTGAATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTTTAAAA
Found at i:67441561 original size:39 final size:39
Alignment explanation
Indices: 67441438--67441587 Score: 135
Period size: 40 Copynumber: 3.8 Consensus size: 39
67441428 GTTATTAATT
** * *
67441438 CCGGGTTAAGTCCCGAAGGC-CTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGGCAC-TTGAACGAGTTACTAA-A
* ** *
67441478 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCACTTGAACGAGTTACT-AAA
*
67441517 TCCGGGTTAAGTCCCGAAGGCA-TTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCACTTGAACGAGTTACTA-AA
* *
67441557 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCACTTGAACGAG
67441588 GAGCTATATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 29 0.31
40 64 0.69
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGTTAAGTCCCGAAGGCACTTGAACGAGTTACTAAA
Found at i:67441595 original size:40 final size:39
Alignment explanation
Indices: 67441478--67441600 Score: 97
Period size: 40 Copynumber: 3.1 Consensus size: 39
67441468 GATACTAATT
* ** ** *
67441478 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGT-TTTAAAA
1 CCGGGCTAAGTCCCGAAGGCA-TTGAACGAGTGACTATAA
* * *
67441517 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATAA
* *
67441557 CCGGGCTATGTCCCGAAGGCACTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGAACGAGTGA-CTATAA
67441597 CCGG
1 CCGG
67441601 TTAAATTCTG
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
39 27 0.39
40 42 0.61
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATAA
Found at i:67449337 original size:40 final size:40
Alignment explanation
Indices: 67449253--67449436 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
67449243 TTGAATGCTG
* * * *
67449253 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
67449292 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
67449333 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
67449373 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
67449413 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67449437 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:67449390 original size:80 final size:81
Alignment explanation
Indices: 67449253--67449433 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
67449243 TTGAATGCTG
* * *
67449253 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
67449317 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
67449333 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
67449394 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
67449413 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
67449434 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:67449457 original size:39 final size:38
Alignment explanation
Indices: 67449334--67449483 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
67449324 GTTATTAATT
* ** * *
67449334 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
67449374 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
67449413 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
67449453 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
67449484 GAGCTATATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:67449491 original size:40 final size:39
Alignment explanation
Indices: 67449374--67449496 Score: 97
Period size: 40 Copynumber: 3.1 Consensus size: 39
67449364 GATACTAATT
* ** ** *
67449374 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGT-TTTAAAA
1 CCGGGCTAAGTCCCGAAGGCATT-GAACGAGTGACTATAA
* * *
67449413 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATAA
* *
67449453 CCGGGCTATGTCCCGAAGGCACTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGAACGAGTGA-CTATAA
67449493 CCGG
1 CCGG
67449497 TTAAATTCCG
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
39 25 0.36
40 44 0.64
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATAA
Found at i:67455939 original size:27 final size:27
Alignment explanation
Indices: 67455909--67456113 Score: 205
Period size: 27 Copynumber: 7.6 Consensus size: 27
67455899 ATATTAAGTC
* *
67455909 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
67455936 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
67455964 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
67455991 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
67456018 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
67456045 CGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
** *
67456072 CGCACACTTAGTGCTACATAGCCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
67456099 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67456114 GTACAATTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 129 0.83
28 26 0.17
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:67456048 original size:54 final size:54
Alignment explanation
Indices: 67455909--67456112 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
67455899 ATATTAAGTC
* * * **
67455909 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAA-T
* *
67455964 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
** ** *
67456018 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
* *
67456072 CGCACACTTAGTGCTACATAGCCAAATCGCACACTTAGTGC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC
67456113 TGTACAATTT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
Found at i:67456078 original size:81 final size:81
Alignment explanation
Indices: 67455963--67456112 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 81
67455953 ATAATCAAAC
* * * * * *
67455963 TCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
67456028 GTGCATCATTTTCATT
66 GTGCATCATTTTCATT
* *
67456044 TCGCACACTTAGTGCAACATGGTCAAATCGCACACTTAGTGCTACATAGCCAAATCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
67456109 GTGC
66 GTGC
67456113 TGTACAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
GTGCATCATTTTCATT
Found at i:67458501 original size:20 final size:20
Alignment explanation
Indices: 67458476--67458542 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
67458466 GTTCTGATAT
67458476 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
67458496 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
67458516 AGATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
67458536 ACATGAT
1 ACATGAT
67458543 GTATTCATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:67458503 original size:11 final size:11
Alignment explanation
Indices: 67458487--67458542 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
67458477 CATGATTGAT
67458487 ATGATATGCAC
1 ATGATATGCAC
*
67458498 ATGATATG--T
1 ATGATATGCAC
*
67458507 ATGATATGCAG
1 ATGATATGCAC
*
67458518 ATGATATG--T
1 ATGATATGCAC
67458527 ATGATATGCAC
1 ATGATATGCAC
67458538 ATGAT
1 ATGAT
67458543 GTATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:67458556 original size:40 final size:39
Alignment explanation
Indices: 67458478--67458556 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 39
67458468 TCTGATATAC
*
67458478 ATGATTGATATGATATGCACATGATATGTATGATATGCAG
1 ATGATTGATATGATATGCACATGA-ATGTATCATATGCAG
67458518 ATGATATG-TATGATATGCACATG-ATGTATTCATAATGCA
1 ATGAT-TGATATGATATGCACATGAATGTA-TCAT-ATGCA
67458557 TTGGGTTGGG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
38 5 0.14
39 3 0.09
40 25 0.71
41 2 0.06
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.35
Consensus pattern (39 bp):
ATGATTGATATGATATGCACATGAATGTATCATATGCAG
Found at i:67458916 original size:31 final size:31
Alignment explanation
Indices: 67458880--67458943 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
67458870 CATTTACAGT
* *
67458880 AAAGGCTTCGGCCTAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
**
67458911 AAAGGCTTCGACCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
67458942 AA
1 AA
67458944 TCTGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:67460850 original size:40 final size:40
Alignment explanation
Indices: 67460776--67460959 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
67460766 GCTACTCGTT
* *
67460776 CAAATGCCTTC-GGACATAGCCCGG-TTACAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
67460815 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
67460855 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
67460894 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
67460935 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67460960 CATCATTCAA
Statistics
Matches: 123, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 43 0.35
40 65 0.53
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67460875 original size:79 final size:78
Alignment explanation
Indices: 67460776--67460958 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 78
67460766 GCTACTCGTT
* *
67460776 CAAATGCCTTCGGACATAGCCCGGTTACAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTT--AGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
67460840 ATTTAGTAAC-TCGCA
63 ATATAGTAACTTAGCA
* * **
67460855 CAAATGCCTTCGGGCTTAGCCCGAAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCG--GTTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
67460920 TATGGTCACTTAGCA
64 TATAGTAACTTAGCA
67460935 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG
67460959 ACATCATTCA
Statistics
Matches: 88, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
78 3 0.03
79 66 0.75
80 17 0.19
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
TAGTAACTTAGCA
Found at i:67472527 original size:27 final size:27
Alignment explanation
Indices: 67472493--67472670 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67472483 TAAATTGTAC
67472493 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67472520 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67472546 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67472574 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67472602 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67472629 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67472656 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67472671 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67472607 original size:82 final size:81
Alignment explanation
Indices: 67472494--67472649 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67472484 AAATTGTACA
* *
67472494 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67472558 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67472575 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67472640 TGCGAGTTGA
65 TGCGAATTGA
67472650 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67472661 original size:82 final size:81
Alignment explanation
Indices: 67472490--67472670 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67472480 GAGTAAATTG
* *
67472490 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67472555 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67472571 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67472635 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67472653 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67472671 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67474518 original size:53 final size:53
Alignment explanation
Indices: 67474449--67474553 Score: 124
Period size: 53 Copynumber: 2.0 Consensus size: 53
67474439 TTCCTTTTTA
* * * *
67474449 AACTTACCATTTCCATGTCTTGACATGGTCTTACGT-GGTATCCTTT-CCTTATG
1 AACTCACCATTGCCATGCCATGACATGGTCTTACGTAGG-AT-CTTTGCCTTATG
**
67474502 AACTCACCATTGCCATGCCATGGTATGGTCTTACGTAGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGCCATGACATGGTCTTACGTAGGATCTTTGCCTTAT
67474554 CGTAGTTTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
52 4 0.09
53 38 0.86
54 2 0.05
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCATGACATGGTCTTACGTAGGATCTTTGCCTTATG
Found at i:67474572 original size:25 final size:25
Alignment explanation
Indices: 67474538--67474587 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
67474528 GGTCTTACGT
67474538 AGGATCTTTGCCTTATCGTAGTTTA
1 AGGATCTTTGCCTTATCGTAGTTTA
67474563 AGGATCTTTGCCTTATCGTAGTTTA
1 AGGATCTTTGCCTTATCGTAGTTTA
67474588 TCACTGCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (25 bp):
AGGATCTTTGCCTTATCGTAGTTTA
Found at i:67476355 original size:15 final size:15
Alignment explanation
Indices: 67476335--67476365 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67476325 AGTGTTTGGT
67476335 TGCCGAATGAATAGA
1 TGCCGAATGAATAGA
67476350 TGCCGAATGAATAGA
1 TGCCGAATGAATAGA
67476365 T
1 T
67476366 TGATTGAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.23
Consensus pattern (15 bp):
TGCCGAATGAATAGA
Found at i:67484844 original size:42 final size:42
Alignment explanation
Indices: 67484764--67484844 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
67484754 GTGCAGGTTT
*
67484764 CACACGGCCAAGACACACGACCGTGTTCTAGGCAATGTGGCA
1 CACACGGCCAAGACACACGACCGTGTTCTAGCCAATGTGGCA
** * *
67484806 CACACGGCTGAGACACACGCCCGTGTCTCT-GCCCATGTG
1 CACACGGCCAAGACACACGACCGTGT-TCTAGCCAATGTG
67484845 CTCAATTCTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 30 0.91
43 3 0.09
ACGTcount: A:0.23, C:0.35, G:0.26, T:0.16
Consensus pattern (42 bp):
CACACGGCCAAGACACACGACCGTGTTCTAGCCAATGTGGCA
Found at i:67500477 original size:28 final size:28
Alignment explanation
Indices: 67500445--67500572 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
67500435 ATAGTAAGTC
*
67500445 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
67500473 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
67500502 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
67500530 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
67500559 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67500573 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:67500535 original size:57 final size:57
Alignment explanation
Indices: 67500444--67500572 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
67500434 TATAGTAAGT
*
67500444 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
67500501 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
67500558 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
67500573 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:67508524 original size:28 final size:28
Alignment explanation
Indices: 67508492--67508619 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
67508482 ATAGTAAGTC
*
67508492 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
67508520 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
67508549 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
67508577 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
67508606 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67508620 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:67508582 original size:57 final size:57
Alignment explanation
Indices: 67508491--67508619 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
67508481 TATAGTAAGT
*
67508491 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
67508548 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
67508605 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
67508620 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:67514638 original size:27 final size:27
Alignment explanation
Indices: 67514608--67514669 Score: 101
Period size: 26 Copynumber: 2.3 Consensus size: 27
67514598 ACTTACTAAA
67514608 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGAAAAATTACCATT
67514635 ATACCCCT-AGATGAAAAATTACCATT
1 ATACCCCTAAGATGAAAAATTACCATT
67514661 ATACCCCTA
1 ATACCCCTA
67514670 TGGTTAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
25 3 0.09
26 22 0.67
27 8 0.24
ACGTcount: A:0.40, C:0.26, G:0.06, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGAAAAATTACCATT
Found at i:67514802 original size:27 final size:26
Alignment explanation
Indices: 67514772--67514860 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 26
67514762 ATGGAGGAAG
** *
67514772 TGTTCTGGTTCCTCTACCACAAATATT
1 TGTTCTGGTGACTCTACCAC-AATATC
* * *
67514799 TGTTTTTGGTGGCTCTACCATAATATC
1 TG-TTCTGGTGACTCTACCACAATATC
*
67514826 TGTATCTGGTGACTCTATCACAATATC
1 TGT-TCTGGTGACTCTACCACAATATC
67514853 TGTTCTGG
1 TGTTCTGG
67514861 CAGTCATGCA
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
26 6 0.12
27 31 0.61
28 14 0.27
ACGTcount: A:0.20, C:0.21, G:0.17, T:0.42
Consensus pattern (26 bp):
TGTTCTGGTGACTCTACCACAATATC
Found at i:67520776 original size:47 final size:47
Alignment explanation
Indices: 67520719--67520975 Score: 352
Period size: 47 Copynumber: 5.4 Consensus size: 47
67520709 ATTGATGTAC
* * * *
67520719 AAGTATATATATGTGATAGGGCCGAGTGGGCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * * * *
67520766 AAGTATATATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTCA
1 AAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
67520815 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
67520862 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
67520909 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
67520956 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
67520976 TCCCGAAGGG
Statistics
Matches: 188, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
47 146 0.78
49 42 0.22
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:67523779 original size:94 final size:94
Alignment explanation
Indices: 67523713--67523921 Score: 284
Period size: 93 Copynumber: 2.3 Consensus size: 94
67523703 GATAATTGTG
67523713 ATGTGAAAGTGT-ATATATGTGATAA-GCCGAATGGCCAAT-TGATGAATGTGAAAGTGTATATA
1 ATGTGAAA-TGTAATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
67523775 TGTGATAAGGCCTAATGGCCGATGTGATGA
65 TGTGATAAGGACTAATGGACAATGTGATGA
* *
67523805 ATGTGAAATGTAATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAATGTAATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
* * *
67523870 GTGATAA-GCCTAATGGCCGATGTGATGA
66 GTGATAAGGACTAATGGACAATGTGATGA
*
67523898 ATGTGAAAGTGTTATATAT-TGATA
1 ATGTGAAA-TGTAATATATGTGATA
67523922 GATTGAGCCT
Statistics
Matches: 110, Mismatches: 3, Indels: 7
0.92 0.03 0.06
Matches are distributed among these distances:
91 3 0.03
92 21 0.19
93 46 0.42
94 40 0.36
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (94 bp):
ATGTGAAATGTAATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGACTAATGGACAATGTGATGA
Found at i:67523898 original size:46 final size:47
Alignment explanation
Indices: 67523713--67523921 Score: 347
Period size: 47 Copynumber: 4.5 Consensus size: 47
67523703 GATAATTGTG
* *
67523713 ATGTGAAAGTGTATATATGTGATAA-GCCGAATGGCCAAT-TGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
67523758 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
67523805 ATGTGAAA-TGTAATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGT-ATATATGTGATAAGGCCTAATGGCCGATGTGATGA
67523852 ATGTGAAAGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
67523898 ATGTGAAAGTGTTATATAT-TGATA
1 ATGTGAAAGTG-TATATATGTGATA
67523922 GATTGAGCCT
Statistics
Matches: 157, Mismatches: 2, Indels: 9
0.93 0.01 0.05
Matches are distributed among these distances:
45 25 0.16
46 52 0.33
47 77 0.49
48 3 0.02
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:67527400 original size:40 final size:40
Alignment explanation
Indices: 67527058--67527443 Score: 351
Period size: 40 Copynumber: 9.8 Consensus size: 40
67527048 TCGAATGATG
** *
67527058 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * *
67527098 TCCGGACTAAGAT-CCGAAG-GCATTTTTGCGAGTTACTAT-
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
** * * *
67527137 TCCGGGCTAAG-CCCG-A-AGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
* ** * *
67527175 TCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
67527215 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
67527255 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
67527295 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
67527335 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * *
67527375 TCCGTGCTAAACCCCGAAGAGCATTCATGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
67527415 TCCGGGCTAGGTCCCG-AGAGCAATCATGC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGC
67527444 CGGTGACGTG
Statistics
Matches: 298, Mismatches: 39, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
37 18 0.06
38 13 0.04
39 26 0.09
40 222 0.74
41 19 0.06
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:67528809 original size:55 final size:55
Alignment explanation
Indices: 67528710--67528827 Score: 220
Period size: 55 Copynumber: 2.1 Consensus size: 55
67528700 ACAAGGGATG
67528710 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAATAAAATAAGAAGC
67528765 ATGGGCAAAACATGTCATGAAACATG-TGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAA-AATAAAATAAGAAGC
67528820 ATGGGCAA
1 ATGGGCAA
67528828 TAAACTAATA
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
54 13 0.21
55 49 0.79
ACGTcount: A:0.45, C:0.09, G:0.24, T:0.22
Consensus pattern (55 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAATAAAATAAGAAGC
Found at i:67530349 original size:47 final size:47
Alignment explanation
Indices: 67530295--67530844 Score: 813
Period size: 47 Copynumber: 11.6 Consensus size: 47
67530285 TATTTGAATA
*
67530295 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
67530342 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
67530391 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
67530440 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
67530487 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
67530536 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
67530583 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
67530630 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
67530677 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
67530724 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
67530771 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
67530818 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
67530845 TCCCGAAGGG
Statistics
Matches: 475, Mismatches: 22, Indels: 12
0.93 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 333 0.70
49 140 0.29
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:67530722 original size:22 final size:22
Alignment explanation
Indices: 67530695--67530816 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
67530685 CATGTGTATG
67530695 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
67530717 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
67530742 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
67530764 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
67530789 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
67530811 TGTGAT
1 TGTGAT
67530817 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:67533985 original size:35 final size:35
Alignment explanation
Indices: 67533939--67534076 Score: 134
Period size: 35 Copynumber: 3.9 Consensus size: 35
67533929 CAAGCCTGAC
* *
67533939 CTTTAGAAAAGGTTGGGATAGACCCGTCTAATGCAA
1 CTTTA-AAAAGGTTGGGATAGACCCATCTAAGGCAA
* * * * * **
67533975 TTTTAAAAAGGCTGGGAAAGATCTATCTAAGATAA
1 CTTTAAAAAGGTTGGGATAGACCCATCTAAGGCAA
67534010 CCTTT-AAAAGGTTGGGATAGACCCATCTAAGGCAA
1 -CTTTAAAAAGGTTGGGATAGACCCATCTAAGGCAA
* * * *
67534045 CCTTAGAAAGGTTGGGATAGACACGTCTAAGG
1 CTTTAAAAAGGTTGGGATAGACCCATCTAAGG
67534077 TAATTTTTTC
Statistics
Matches: 80, Mismatches: 20, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
34 3 0.04
35 70 0.88
36 7 0.09
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.25
Consensus pattern (35 bp):
CTTTAAAAAGGTTGGGATAGACCCATCTAAGGCAA
Found at i:67537745 original size:42 final size:40
Alignment explanation
Indices: 67537699--67537841 Score: 99
Period size: 42 Copynumber: 3.4 Consensus size: 40
67537689 TCCCAGATAG
67537699 GGTCTTACACGAAATTAGATACGATGCCGATGTCTCAGACAT
1 GGTCTTACACGAAATTAGATACGATGCCGATG-C-CAGACAT
* * * * * *
67537741 GGTCTTATACATAAATCT-GAAACGAGGCTTGCATGCCAGACAC
1 GGTCTTACAC-GAAAT-TAGATACGATGC-CG-ATGCCAGACAT
* * * *
67537784 GGTCTTACACGGAATCAGATACAATGTCGATGCCCCAGACAT
1 GGTCTTACACGAAATTAGATACGATGCCGATG--CCAGACAT
*
67537826 GGTCTTATACGTAAAT
1 GGTCTTACACG-AAAT
67537842 CTCAATCAAG
Statistics
Matches: 75, Mismatches: 18, Indels: 15
0.69 0.17 0.14
Matches are distributed among these distances:
40 3 0.04
41 1 0.01
42 35 0.47
43 30 0.40
44 3 0.04
45 3 0.04
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (40 bp):
GGTCTTACACGAAATTAGATACGATGCCGATGCCAGACAT
Found at i:67537793 original size:85 final size:85
Alignment explanation
Indices: 67537689--67537880 Score: 240
Period size: 85 Copynumber: 2.3 Consensus size: 85
67537679 GATGCCTCTG
* * * * * *
67537689 TCCCAGATAGGGTCTTACACGAAATTAGATACGATGCCGATGTCTCAGACATGGTCTTATACATA
1 TCCCAGACACGGTCTTACACGAAATCAGATACAATGCCGATGCCCCAGACATGGTCTTATACATA
* * *
67537754 AATCTGAAACGAGGCTTGCA
66 AATCTCAAACAAGGCCTGCA
* * * *
67537774 TGCCAGACACGGTCTTACACGGAATCAGATACAATGTCGATGCCCCAGACATGGTCTTATACGTA
1 TCCCAGACACGGTCTTACACGAAATCAGATACAATGCCGATGCCCCAGACATGGTCTTATACATA
* **
67537839 AATCTCAATCAAGGCCTGTG
66 AATCTCAAACAAGGCCTGCA
67537859 TCCCAGACACGGTCTTACACGA
1 TCCCAGACACGGTCTTACACGA
67537881 TATCTTAGAC
Statistics
Matches: 89, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
85 89 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (85 bp):
TCCCAGACACGGTCTTACACGAAATCAGATACAATGCCGATGCCCCAGACATGGTCTTATACATA
AATCTCAAACAAGGCCTGCA
Found at i:67544870 original size:42 final size:42
Alignment explanation
Indices: 67544751--67545005 Score: 155
Period size: 43 Copynumber: 6.0 Consensus size: 42
67544741 AGATGTTCAT
* * * * *
67544751 AATCAAATACAATGCCGACGTCCCAGACGTGGTCTTACATGTA
1 AATCAGATACGATGCCGATGTCCCAGACATGGTCTTACACG-A
* * ** * * *
67544794 ATTCA-ATATTGATGCCTCTGTCCCAGATAGGGTCTTCCACGA
1 AATCAGATA-CGATGCCGATGTCCCAGACATGGTCTTACACGA
* * *
67544836 AATCAGATACGATGCCGATGTCTCAGACATGGTCTTATACATA
1 AATCAGATACGATGCCGATGTCCCAGACATGGTCTTACAC-GA
* * * **
67544879 AATCTCA-AT-CGAGGCCTG-TTTCCCATACACAGTCTTACACGA
1 AA--TCAGATACGATGCC-GATGTCCCAGACATGGTCTTACACGA
* *
67544921 AATCAGATACAATGCCGATGTCCCAGACATGGTCTTATACGTA
1 AATCAGATACGATGCCGATGTCCCAGACATGGTCTTACACG-A
* *
67544964 AATCTCA-AT-CGAGGCCTG-TGTCCCAGACACGGTCTTACACGA
1 AA--TCAGATACGATGCC-GATGTCCCAGACATGGTCTTACACGA
67545006 TATCTTAGAC
Statistics
Matches: 159, Mismatches: 40, Indels: 27
0.70 0.18 0.12
Matches are distributed among these distances:
40 3 0.02
41 3 0.02
42 58 0.36
43 83 0.52
44 6 0.04
45 6 0.04
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
AATCAGATACGATGCCGATGTCCCAGACATGGTCTTACACGA
Found at i:67544903 original size:85 final size:85
Alignment explanation
Indices: 67544751--67545005 Score: 318
Period size: 85 Copynumber: 3.0 Consensus size: 85
67544741 AGATGTTCAT
* * * * * * *
67544751 AATCAAATACAATGCCGACGTCCCAGACGTGGTC-T-TACATGTAAT-TCAATATTGATGCCTCT
1 AATCAGATACAATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTC-A-ATCGAGGCCTGT
* * *
67544813 GTCCCAGATAGGGTCTTCCACGA
63 GTCCCAGACACGGTCTTACACGA
* * *
67544836 AATCAGATACGATGCCGATGTCTCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTGTTTC
1 AATCAGATACAATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTGTGTC
* *
67544901 CCATACACAGTCTTACACGA
66 CCAGACACGGTCTTACACGA
*
67544921 AATCAGATACAATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTGTGTC
1 AATCAGATACAATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTGTGTC
67544986 CCAGACACGGTCTTACACGA
66 CCAGACACGGTCTTACACGA
67545006 TATCTTAGAC
Statistics
Matches: 146, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
85 134 0.92
86 5 0.03
87 7 0.05
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (85 bp):
AATCAGATACAATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTGTGTC
CCAGACACGGTCTTACACGA
Found at i:67549071 original size:10 final size:9
Alignment explanation
Indices: 67549048--67549073 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
67549038 TTTGGTGTTG
67549048 GTTTTTGAT
1 GTTTTTGAT
67549057 GTTTTTGAT
1 GTTTTTGAT
67549066 GTTTTTGA
1 GTTTTTGA
67549074 GATCTTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.23, T:0.65
Consensus pattern (9 bp):
GTTTTTGAT
Found at i:67552963 original size:47 final size:47
Alignment explanation
Indices: 67552885--67553386 Score: 745
Period size: 47 Copynumber: 10.6 Consensus size: 47
67552875 CCCTTCGGGA
* * * * * *
67552885 CTTATCACATTTATAC-CATTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACAC-TTTCACATTCATCACATCGGCCATTAGGC
* *
67552932 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67552979 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67553026 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67553073 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67553122 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67553169 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67553216 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67553265 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67553314 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67553361 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
67553387 CACAATTATC
Statistics
Matches: 423, Mismatches: 27, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
47 284 0.67
48 1 0.00
49 138 0.33
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67553123 original size:96 final size:96
Alignment explanation
Indices: 67552885--67553386 Score: 770
Period size: 96 Copynumber: 5.3 Consensus size: 96
67552875 CCCTTCGGGA
* * * * *
67552885 CTTATCACAT-T-TATAC-CATTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATA
1 CTTATCACATATATATACAC-TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
67552947 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
67552979 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
67553042 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
67553073 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
67553138 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67553169 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
* *
67553232 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
67553265 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
67553330 ACTTTCACATTCATCACATCGGCCATTAGGT
66 ACTTTCACATTCATCACATCGGCCATTAGGC
67553361 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
67553387 CACAATTATC
Statistics
Matches: 373, Mismatches: 26, Indels: 18
0.89 0.06 0.04
Matches are distributed among these distances:
93 1 0.00
94 138 0.37
95 1 0.00
96 189 0.51
98 44 0.12
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67553141 original size:143 final size:143
Alignment explanation
Indices: 67552885--67553386 Score: 798
Period size: 143 Copynumber: 3.5 Consensus size: 143
67552875 CCCTTCGGGA
* * * * * * * *
67552885 CTTATCACATTTATAC-CATTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATA
1 CTTATCACATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
* * *
67552947 CACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCAC
65 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCAC
67553012 ATCGGCTATTAGGC
130 ATCGGCTATTAGGC
67553026 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
67553091 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
67553156 TCGGCTATTAGGC
131 TCGGCTATTAGGC
*
67553169 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
67553234 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* * *
67553299 CATTGGCCATTCGGC
129 CATCGGCTATTAGGC
*
67553314 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
67553379 A--TTCACAT
66 ACTTTCACAT
67553387 CACAATTATC
Statistics
Matches: 339, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
141 45 0.13
142 1 0.00
143 193 0.57
145 100 0.29
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCTATTAGGC
Found at i:67566058 original size:25 final size:24
Alignment explanation
Indices: 67566030--67566165 Score: 209
Period size: 25 Copynumber: 5.5 Consensus size: 24
67566020 AAAGCTTCAT
67566030 AATTTGCTCTTAATAATTCCAGTTA
1 AATTTGCTCTTAATAATTCC-GTTA
67566055 AATTTGCTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCC-GTTA
67566080 AATTTGCTCTTAATAATTCCAGTTA
1 AATTTGCTCTTAATAATTCC-GTTA
67566105 AATTTGCTCTTAATAATTCCGATTA
1 AATTTGCTCTTAATAATTCCG-TTA
* *
67566130 AATTTGCTTTTAATATTTCCGTTA
1 AATTTGCTCTTAATAATTCCGTTA
*
67566154 AATTTGCCCTTA
1 AATTTGCTCTTA
67566166 TTGTTTCCGA
Statistics
Matches: 104, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
24 14 0.13
25 90 0.87
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.46
Consensus pattern (24 bp):
AATTTGCTCTTAATAATTCCGTTA
Found at i:67567059 original size:45 final size:45
Alignment explanation
Indices: 67566994--67567214 Score: 297
Period size: 45 Copynumber: 5.0 Consensus size: 45
67566984 TATCGTACAG
* * **
67566994 TACTATTCGGGTCTTTGAGCCTAGCAGGCTATAATGCCGGTGTGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
*
67567039 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
67567084 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCAGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
67567129 TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGATGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
67567174 TGA-GA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGAA
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
67567215 TGAATTCGGG
Statistics
Matches: 160, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
42 11 0.07
43 17 0.11
44 5 0.03
45 126 0.79
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:67573760 original size:12 final size:12
Alignment explanation
Indices: 67573743--67573768 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67573733 GCCTAGTCAT
67573743 ATATATATATAC
1 ATATATATATAC
67573755 ATATATATATAC
1 ATATATATATAC
67573767 AT
1 AT
67573769 GTCATGATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
ATATATATATAC
Found at i:67575799 original size:30 final size:30
Alignment explanation
Indices: 67575765--67575825 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
67575755 TCCTTAATTC
*
67575765 AAACTTTTGCAAAATTACAATTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
67575795 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
67575825 A
1 A
67575826 GGCTTTGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:67581853 original size:16 final size:16
Alignment explanation
Indices: 67581834--67581864 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67581824 CTTCTTCACT
67581834 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
67581850 TACTTACTTACTTAA
1 TACTCACTTACTTAA
67581865 TCAAATTTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:67581870 original size:20 final size:20
Alignment explanation
Indices: 67581831--67581870 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
67581821 AAACTTCTTC
* *
67581831 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
67581851 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
67581871 TTCTTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:67582262 original size:55 final size:53
Alignment explanation
Indices: 67582117--67582311 Score: 187
Period size: 55 Copynumber: 3.6 Consensus size: 53
67582107 TTACCATTGT
*
67582117 CATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
* * * * * * *
67582170 CATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAATAACTTATCAATGC
1 CATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT--GAACTCACCAATGC
* * *
67582225 CATGTCTTGACATGGTCTTATATGATATCCTTGCCTTA-GAAGCCTTACCAATTGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA--CTCACCAA-TGC
* * * *
67582280 CGTGCCTTGGCATAGTCTTACATGGTATCCTT
1 CATGTCTTGACATGGTCTTACATGGTATCCTT
67582312 AAACCCTAAT
Statistics
Matches: 113, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
52 4 0.04
53 31 0.27
54 7 0.06
55 69 0.61
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
Found at i:67588642 original size:46 final size:46
Alignment explanation
Indices: 67588546--67588678 Score: 128
Period size: 46 Copynumber: 2.9 Consensus size: 46
67588536 TTGGCTTGAA
* * * *
67588546 AGAAAATGATTAAGACCATAGTGGAAAGACACTGTGGCA-CTATACC
1 AGAAAA-GAGTAAAACCATAGTTGAAAGACACTATGGCATCTATACC
* *
67588592 AGAAAAGAAGTAAAACCATAGTTGAAAGACACTATGACATC-ATACT
1 AGAAAAG-AGTAAAACCATAGTTGAAAGACACTATGGCATCTATACC
* * * *
67588638 AGAAACGAGTAAGACTAT-GATTGAAAGACATTATGGCATCT
1 AGAAAAGAGTAAAACCATAG-TTGAAAGACACTATGGCATCT
67588679 TGATTCTATC
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
44 1 0.01
45 28 0.39
46 42 0.58
47 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.21
Consensus pattern (46 bp):
AGAAAAGAGTAAAACCATAGTTGAAAGACACTATGGCATCTATACC
Found at i:67588692 original size:45 final size:45
Alignment explanation
Indices: 67588643--67588860 Score: 314
Period size: 45 Copynumber: 4.9 Consensus size: 45
67588633 ATACTAGAAA
* * * *
67588643 CGAGTAAGACTATGATTGAAAGACATTATGGCATCTTGATTCTAT
1 CGAGTAAGACCATGACTGAAAGATATTATGGCATCATGATTCTAT
* *
67588688 CGAGTAAGACCATGACTGAAAGATGTTATGGCATCATGATTTTAT
1 CGAGTAAGACCATGACTGAAAGATATTATGGCATCATGATTCTAT
67588733 CGAGTAAGACCATGACTGAAAGATATTATGGCATCATGATTCTAT
1 CGAGTAAGACCATGACTGAAAGATATTATGGCATCATGATTCTAT
* * *
67588778 TGAGTAAGACCATGATTGAAAGATGTTATGGCATCATGATTCTAT
1 CGAGTAAGACCATGACTGAAAGATATTATGGCATCATGATTCTAT
* *
67588823 -GAGTAAGACCAT-AGCTAAAAGATGTTATGGCATCATGA
1 CGAGTAAGACCATGA-CTGAAAGATATTATGGCATCATGA
67588861 ATCAAAGAAA
Statistics
Matches: 159, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
43 1 0.01
44 34 0.21
45 124 0.78
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (45 bp):
CGAGTAAGACCATGACTGAAAGATATTATGGCATCATGATTCTAT
Found at i:67588877 original size:89 final size:90
Alignment explanation
Indices: 67588643--67588889 Score: 293
Period size: 90 Copynumber: 2.8 Consensus size: 90
67588633 ATACTAGAAA
* * * * * * ** * *
67588643 CGAGTAAGACTATGATTGAAAGACATTATGGCATCTTGATTCTATCGAGTAAGACCATGACTGAA
1 CGAGTAAGACCATGACTAAAAGATATTATGGCATCATGAATCTAAAGAATAAGACCATGATTGAA
*
67588708 AGATGTTATGGCATCATGATTTTAT
66 AGATGTTATGGCATCATGATTCTAT
* * ** *
67588733 CGAGTAAGACCATGACTGAAAGATATTATGGCATCATGATTCTATTGAGTAAGACCATGATTGAA
1 CGAGTAAGACCATGACTAAAAGATATTATGGCATCATGAATCTAAAGAATAAGACCATGATTGAA
67588798 AGATGTTATGGCATCATGATTCTAT
66 AGATGTTATGGCATCATGATTCTAT
* *
67588823 -GAGTAAGACCAT-AGCTAAAAGATGTTATGGCATCATGAATC-AAAGAAATAAGACCATGGTTG
1 CGAGTAAGACCATGA-CTAAAAGATATTATGGCATCATGAATCTAAAG-AATAAGACCATGATTG
67588885 AAAGA
64 AAAGA
67588890 CACTATGGCA
Statistics
Matches: 141, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
88 3 0.02
89 55 0.39
90 83 0.59
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (90 bp):
CGAGTAAGACCATGACTAAAAGATATTATGGCATCATGAATCTAAAGAATAAGACCATGATTGAA
AGATGTTATGGCATCATGATTCTAT
Found at i:67588897 original size:45 final size:45
Alignment explanation
Indices: 67588594--67588934 Score: 172
Period size: 45 Copynumber: 7.6 Consensus size: 45
67588584 ACTATACCAG
* * * * * *
67588594 AAAAGAAGTAAAACCATAGTTGAAAGACACTATGACATCAT-ACT-
1 AAAAGAA-TAAGACCATGGTTGAAAGATATTATGGCATCATGAATC
* * * * * *
67588638 AGAAACGAGTAAGACTATGATTGAAAGACATTATGGCATCTTGATTC
1 A-AAA-GAATAAGACCATGGTTGAAAGATATTATGGCATCATGAATC
* ** * ** * * *
67588685 TATCGAGTAAGACCATGACTGAAAGATGTTATGGCATCATGATTT
1 AAAAGAATAAGACCATGGTTGAAAGATATTATGGCATCATGAATC
* ** * ** *
67588730 TATCGAGTAAGACCATGACTGAAAGATATTATGGCATCATGATTC
1 AAAAGAATAAGACCATGGTTGAAAGATATTATGGCATCATGAATC
* ** * * * *
67588775 TATTGAGTAAGACCATGATTGAAAGATGTTATGGCATCATGATTC
1 AAAAGAATAAGACCATGGTTGAAAGATATTATGGCATCATGAATC
* * * * * * *
67588820 -TATGAGTAAGACCATAGCTAAAAGATGTTATGGCATCATGAATC
1 AAAAGAATAAGACCATGGTTGAAAGATATTATGGCATCATGAATC
* * *
67588864 -AAAGAAATAAGACCATGGTTGAAAGACACTATGGCATCAAG-A-C
1 AAAAG-AATAAGACCATGGTTGAAAGATATTATGGCATCATGAATC
*
67588907 AAGAATAAATAAGACCATGGTTGAAAGA
1 AA-AA-GAATAAGACCATGGTTGAAAGA
67588935 CACCATGCCA
Statistics
Matches: 248, Mismatches: 41, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
43 1 0.00
44 42 0.17
45 200 0.81
46 5 0.02
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.26
Consensus pattern (45 bp):
AAAAGAATAAGACCATGGTTGAAAGATATTATGGCATCATGAATC
Found at i:67588897 original size:89 final size:90
Alignment explanation
Indices: 67588595--67588902 Score: 266
Period size: 90 Copynumber: 3.4 Consensus size: 90
67588585 CTATACCAGA
* * *** * *
67588595 AAAGAAGTAAAACCAT-AGTTGAAAGACACTATGACATCAT-ACTAGAAACGAGTAAGACTATGA
1 AAAGAA-TAAGACCATGA-TTGAAAGACACTATGGCATCATGA-TTCTATCGAGTAAGACCATGA
* * * * *
67588658 TTGAAAGACATTATGGCATCTTGATTCT
63 CTAAAAGATATTATGGCATCATGAATCT
** * * *** * *
67588686 ATCGAGTAAGACCATGACTGAAAGATGTTATGGCATCATGATTTTATCGAGTAAGACCATGACTG
1 AAAGAATAAGACCATGATTGAAAGACACTATGGCATCATGATTCTATCGAGTAAGACCATGACTA
*
67588751 AAAGATATTATGGCATCATGATTCT
66 AAAGATATTATGGCATCATGAATCT
** * ***
67588776 ATTGAGTAAGACCATGATTGAAAGATGTTATGGCATCATGATTCTAT-GAGTAAGACCAT-AGCT
1 AAAGAATAAGACCATGATTGAAAGACACTATGGCATCATGATTCTATCGAGTAAGACCATGA-CT
*
67588839 AAAAGATGTTATGGCATCATGAATC-
65 AAAAGATATTATGGCATCATGAATCT
*
67588864 AAAGAAATAAGACCATGGTTGAAAGACACTATGGCATCA
1 AAAG-AATAAGACCATGATTGAAAGACACTATGGCATCA
67588903 AGACAAGAAT
Statistics
Matches: 183, Mismatches: 30, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
88 3 0.02
89 65 0.36
90 110 0.60
91 5 0.03
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (90 bp):
AAAGAATAAGACCATGATTGAAAGACACTATGGCATCATGATTCTATCGAGTAAGACCATGACTA
AAAGATATTATGGCATCATGAATCT
Found at i:67588920 original size:134 final size:136
Alignment explanation
Indices: 67588595--67588936 Score: 372
Period size: 134 Copynumber: 2.5 Consensus size: 136
67588585 CTATACCAGA
* * * * *
67588595 AAAGAAGTAAAACCATAGTTGAAAGACACTATGACATC-ATACTAGAA-ACGAGTAAGACTATGA
1 AAAGAAGTAAGACCATGGTTGAAAGACACTATGGCATCAAGACTAGAATA--AGTAAGACCATGA
* *
67588658 TTGAAAGACATTATGGCATCTTGATTCTATCGAGTAAGACCATGACTGAAAGATGTTATGGCATC
64 TTGAAAGACATTATGGCATCATGATTCTATCGAGTAAGACCATGACTAAAAGATGTTATGGCATC
* *
67588723 ATGATTTT
129 ATGATATC
** ** * * * * ** * *
67588731 ATCG-AGTAAGACCATGACTGAAAGATATTATGGCATCATGATTCTATTGAGTAAGACCATGATT
1 AAAGAAGTAAGACCATGGTTGAAAGACACTATGGCATCAAGACTAGAATAAGTAAGACCATGATT
**
67588795 GAAAGATGTTATGGCATCATGATTCTAT-GAGTAAGACCAT-AGCTAAAAGATGTTATGGCATCA
66 GAAAGACATTATGGCATCATGATTCTATCGAGTAAGACCATGA-CTAAAAGATGTTATGGCATCA
67588858 TGA-ATC
130 TGATATC
* * * *
67588864 AAAGAAATAAGACCATGGTTGAAAGACACTATGGCATCAAGACAAGAATAAATAAGACCATGGTT
1 AAAGAAGTAAGACCATGGTTGAAAGACACTATGGCATCAAGACTAGAATAAGTAAGACCATGATT
67588929 GAAAGACA
66 GAAAGACA
67588937 CCATGCCACA
Statistics
Matches: 161, Mismatches: 41, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
133 4 0.02
134 87 0.54
135 65 0.40
136 5 0.03
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (136 bp):
AAAGAAGTAAGACCATGGTTGAAAGACACTATGGCATCAAGACTAGAATAAGTAAGACCATGATT
GAAAGACATTATGGCATCATGATTCTATCGAGTAAGACCATGACTAAAAGATGTTATGGCATCAT
GATATC
Found at i:67592005 original size:5 final size:5
Alignment explanation
Indices: 67591997--67592022 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
67591987 AAGATAAAAT
67591997 AAACA AAACA AAACA AAACA AAACA A
1 AAACA AAACA AAACA AAACA AAACA A
67592023 TTGTTTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACA
Found at i:67593190 original size:17 final size:17
Alignment explanation
Indices: 67593168--67593203 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
67593158 TTGTTAGCTA
67593168 ATATATTCTAAA-TGTTG
1 ATATATTC-AAATTGTTG
67593185 ATATATTCAAATTGTTG
1 ATATATTCAAATTGTTG
67593202 AT
1 AT
67593204 TGATAATCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.47
Consensus pattern (17 bp):
ATATATTCAAATTGTTG
Found at i:67605070 original size:41 final size:41
Alignment explanation
Indices: 67605023--67605122 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 41
67605013 GCTATGTGTA
*
67605023 GCACTTAGTGTGCGAGATAGAGATAGCTTCGGCTATATA-T
1 GCACTTAGTGTGCGAGATACAGATAGCTTCGGCTATATACT
* * * *
67605063 GGCACTTAGTGTACGA-TTTCAGATAGCTTCGGCTATGTACT
1 -GCACTTAGTGTGCGAGATACAGATAGCTTCGGCTATATACT
*
67605104 GCACTTAGTGTGCAAGATA
1 GCACTTAGTGTGCGAGATA
67605123 TCGAGCATTC
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
40 32 0.67
41 16 0.33
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (41 bp):
GCACTTAGTGTGCGAGATACAGATAGCTTCGGCTATATACT
Found at i:67606239 original size:12 final size:12
Alignment explanation
Indices: 67606222--67606248 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
67606212 TCAGAGAGTT
67606222 ACACGGGGTAGG
1 ACACGGGGTAGG
67606234 ACACGGGGTAGG
1 ACACGGGGTAGG
67606246 ACA
1 ACA
67606249 TGGCCAGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.19, G:0.44, T:0.07
Consensus pattern (12 bp):
ACACGGGGTAGG
Found at i:67606862 original size:43 final size:43
Alignment explanation
Indices: 67606804--67606909 Score: 155
Period size: 43 Copynumber: 2.5 Consensus size: 43
67606794 ACAGATCAAC
* *
67606804 TATATGTGGCACTTAGTGTTTGAGATCGAGATAGCTTCGGCTA
1 TATATATGGCACTTAGTGTGTGAGATCGAGATAGCTTCGGCTA
*
67606847 TATATATGGCACTTAGTGTGTGAGATCGAGATAGCTTTGGC--
1 TATATATGGCACTTAGTGTGTGAGATCGAGATAGCTTCGGCTA
*
67606888 TATATATGG-AATTAGTGTGTGA
1 TATATATGGCACTTAGTGTGTGA
67606910 TTTGAGATAA
Statistics
Matches: 59, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
40 12 0.20
41 9 0.15
43 38 0.64
ACGTcount: A:0.25, C:0.10, G:0.28, T:0.36
Consensus pattern (43 bp):
TATATATGGCACTTAGTGTGTGAGATCGAGATAGCTTCGGCTA
Found at i:67614309 original size:40 final size:40
Alignment explanation
Indices: 67614171--67614302 Score: 196
Period size: 40 Copynumber: 3.3 Consensus size: 40
67614161 GGACTAAGAT
* * *
67614171 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTATG-C
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTATGTC
* *
67614210 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTATGTC
67614250 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTATGTC
67614290 CCGAAGGCATTTG
1 CCGAAGGCATTTG
67614303 AACGAGTAGC
Statistics
Matches: 84, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
39 33 0.39
40 49 0.58
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTATGTC
Found at i:67614324 original size:79 final size:79
Alignment explanation
Indices: 67614171--67614325 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
67614161 GGACTAAGAT
** **
67614171 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTATGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTATGCCCGAAGGCATTTGAACGAGTTACTAA
67614236 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
67614250 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTATG-CCCGAAGGCATTTGAACGAGTTA-C
*
67614313 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
67614326 ATTTTGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.60
80 25 0.37
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTATGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:67622147 original size:40 final size:39
Alignment explanation
Indices: 67622064--67622244 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 39
67622054 TTGAATGATG
* * * *
67622064 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
67622104 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
67622144 TCCGGGCTAAGCCCGAAGGCATTTGTGCG-GTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
67622182 TCCGGGTTAA--CCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67622220 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
67622245 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 12, Indels: 14
0.82 0.08 0.09
Matches are distributed among these distances:
36 17 0.14
37 14 0.11
38 19 0.16
39 17 0.14
40 47 0.39
41 8 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67624042 original size:6 final size:6
Alignment explanation
Indices: 67624001--67624041 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
67623991 GTTCATTTGT
* *
67624001 TTTATA TTTATA TTTATA TTTATA TTTATG TTTATT TTTAT
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTAT
67624042 TCTATTAGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (6 bp):
TTTATA
Found at i:67634224 original size:79 final size:81
Alignment explanation
Indices: 67634088--67634272 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
67634078 TTGAATGATG
*
67634088 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
67634152 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
67634167 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
67634229 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
67634247 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67634273 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:67634286 original size:40 final size:40
Alignment explanation
Indices: 67634089--67634272 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
67634079 TGAATGATGT
* * * *
67634089 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
67634129 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
67634169 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
67634207 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
67634248 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
67634273 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:67634294 original size:79 final size:79
Alignment explanation
Indices: 67634141--67634305 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
67634131 GGACTAAGAT
* **
67634141 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
67634206 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
67634220 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
67634283 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
67634299 CCGAAGG
1 CCGAAGG
67634306 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:67636379 original size:41 final size:40
Alignment explanation
Indices: 67636334--67636416 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 40
67636324 TGGCGACAAA
* *
67636334 TCAACTATATGTGGCACTTAGTATGCAAGA-TCGAGATAGCT
1 TCAACTATATATGACACTTAGTATGC--GATTCGAGATAGCT
*
67636375 TCAACTATATATGACACTTAGTGTGCGATTCGAGATAGCT
1 TCAACTATATATGACACTTAGTATGCGATTCGAGATAGCT
67636415 TC
1 TC
67636417 GGCTATGTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
39 2 0.05
40 13 0.34
41 23 0.61
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.31
Consensus pattern (40 bp):
TCAACTATATATGACACTTAGTATGCGATTCGAGATAGCT
Found at i:67636436 original size:40 final size:40
Alignment explanation
Indices: 67636364--67636440 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
67636354 GTATGCAAGA
*
67636364 TCGAGATAGCTTCAACTATATATGACACTTAGTGTGCGAT
1 TCGAGATAGCTTCAACTATATATAACACTTAGTGTGCGAT
** * *
67636404 TCGAGATAGCTTCGGCTATGTATAACATTTAGTGTGC
1 TCGAGATAGCTTCAACTATATATAACACTTAGTGTGC
67636441 AATATATCGA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (40 bp):
TCGAGATAGCTTCAACTATATATAACACTTAGTGTGCGAT
Found at i:67640955 original size:34 final size:34
Alignment explanation
Indices: 67640909--67640998 Score: 87
Period size: 34 Copynumber: 2.6 Consensus size: 34
67640899 GCAAATAGTC
* *
67640909 TGGG-CCTAAGCCC-TTAACAGTAGCATTATCAGTA
1 TGGGCCCT-AGCCCATT-ACAGTAACAATATCAGTA
* *
67640943 TGGGCCCTAGCCCATTACATTAACAATATCAGTG
1 TGGGCCCTAGCCCATTACAGTAACAATATCAGTA
*
67640977 TGGGCCTTAGCCCAATT-CAGTA
1 TGGGCCCTAGCCC-ATTACAGTA
67640999 TAGTATCAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
34 39 0.83
35 8 0.17
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (34 bp):
TGGGCCCTAGCCCATTACAGTAACAATATCAGTA
Found at i:67641068 original size:22 final size:23
Alignment explanation
Indices: 67641029--67641071 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
67641019 GAGATCCTAC
*
67641029 CCATCCATCCTCTACACTCCACT
1 CCATCCAACCTCTACACTCCACT
67641052 CCATCCAACC-CTACACTCCA
1 CCATCCAACCTCTACACTCCA
67641072 TTCAGGGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.26, C:0.53, G:0.00, T:0.21
Consensus pattern (23 bp):
CCATCCAACCTCTACACTCCACT
Found at i:67643130 original size:40 final size:40
Alignment explanation
Indices: 67642958--67643123 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
67642948 AACCCAAGTA
*
67642958 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
67642997 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * *
67643037 CCTTCGGGACTTAGCCCGGGTATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * *
67643077 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
67643117 CCTTCGG
1 CCTTCGG
67643124 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.11
40 104 0.89
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:67660879 original size:18 final size:18
Alignment explanation
Indices: 67660856--67660892 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
67660846 ATGCAAGAGA
67660856 TTGGTTCAATTTAATGAG
1 TTGGTTCAATTTAATGAG
67660874 TTGGTTCAATTTAATGAG
1 TTGGTTCAATTTAATGAG
67660892 T
1 T
67660893 ATGTATGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.05, G:0.22, T:0.46
Consensus pattern (18 bp):
TTGGTTCAATTTAATGAG
Found at i:67663697 original size:57 final size:57
Alignment explanation
Indices: 67663633--67663746 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
67663623 CTATGACTTA
*
67663633 AGCCAAAATAAATGAATCATTCTCTTAAAATAACATCCTAGTCTAGCCCTATACATG
1 AGCCAAAATAAATGAATCATTCTCTTAAAATAACATCCTAGTCTAGACCTATACATG
67663690 AGCCAAAATAAATGAATCATTCTCTTAAAATAACATCCTAGTCTAGACCTATACATG
1 AGCCAAAATAAATGAATCATTCTCTTAAAATAACATCCTAGTCTAGACCTATACATG
67663747 CCACTTTTCA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (57 bp):
AGCCAAAATAAATGAATCATTCTCTTAAAATAACATCCTAGTCTAGACCTATACATG
Found at i:67664358 original size:47 final size:46
Alignment explanation
Indices: 67664158--67664521 Score: 194
Period size: 47 Copynumber: 7.8 Consensus size: 46
67664148 TGGGATATAT
* * * *
67664158 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCG
1 TGCCAATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATGTA--TG
** * * * *
67664208 TGCTGATGCATGTCCCAGACATGTCTTATACTAGCAC-AACTCT-T-
1 TGCCAATGCATGTCCCAGACATGTCTTACACTGGCACTCA-TGTATG
* * * * *
67664252 AGCCGAA-GCATGTCCTAGACACGTCTTACATTGGCTATCTC-TGTCAAG
1 TGCC-AATGCATGTCCCAGACATGTCTTACACTGGC-A-CTCATGT-ATG
* * * * *
67664300 -GTCGATGCATGTCCCAGACGTGTCTTACACTGGCACTCATCTCTG
1 TGCCAATGCATGTCCCAGACATGTCTTACACTGGCACTCATGTATG
67664345 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATAGTATG
1 TGCCAATG-CATGTCCCAGACAT-GTCTTACACTGGC-ACTCAT-GTATG
** * * * *
67664394 -GCTGACGCATGTCCCAGACATGTCTTACACTAGC-C-CTTGTCTGG
1 TGCCAATGCATGTCCCAGACATGTCTTACACTGGCACTCATGTAT-G
* * * *
67664438 ATACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AATG
1 -TGCCAATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATGTATG
*
67664486 TGGCCGAA-GCATGTCCTAGACATGTCTTACACTGGC
1 T-GCC-AATGCATGTCCCAGACATGTCTTACACTGGC
67664522 GCACAAATCG
Statistics
Matches: 241, Mismatches: 48, Indels: 54
0.70 0.14 0.16
Matches are distributed among these distances:
43 3 0.01
44 28 0.12
45 8 0.03
46 39 0.16
47 82 0.34
48 51 0.21
49 21 0.09
50 9 0.04
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
TGCCAATGCATGTCCCAGACATGTCTTACACTGGCACTCATGTATG
Found at i:67664409 original size:94 final size:93
Alignment explanation
Indices: 67664158--67664518 Score: 353
Period size: 94 Copynumber: 3.9 Consensus size: 93
67664148 TGGGATATAT
* * *
67664158 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCTGATGCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCTGATGCATGTC
* *
67664222 CCAGACATGTCTTATACTAGCA-CAACTCT-
63 CCAGACATGTCTTACACTAGCACCATCTCTG
* * * * *
67664251 TAGCCGAA-G-CATGTCCTAGACA-CGTCTTACATTGGCTATC-TCTGTCAAGG-TCGATGCATG
1 T-GCC-AATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT-ATGGCT-GATGCATG
* *
67664311 TCCCAGACGTGTCTTACACTGGCACTCATCTCTG
61 TCCCAGACATGTCTTACACTAGCAC-CATCTCTG
*
67664345 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGACGCATGTCCCA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCA
* *
67664410 GACATGTCTTACACTAGC-CCTTGTCTGG
66 GACATGTCTTACACTAGCACCATCTCT-G
* * * * * * * *
67664438 ATACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCC
67664503 AGACATGTCTTACACT
65 AGACATGTCTTACACT
67664519 GGCGCACAAA
Statistics
Matches: 223, Mismatches: 29, Indels: 31
0.79 0.10 0.11
Matches are distributed among these distances:
90 1 0.00
91 31 0.14
92 23 0.10
93 26 0.12
94 121 0.54
95 20 0.09
96 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCA
GACATGTCTTACACTAGCACCATCTCTG
Found at i:67665377 original size:33 final size:33
Alignment explanation
Indices: 67665315--67665426 Score: 136
Period size: 33 Copynumber: 3.4 Consensus size: 33
67665305 ACTACATTTT
* ** *
67665315 TACAGTATCAGTATAGTCCAGGCCAAAGCCCTA
1 TACAGTATCAGTACAGTCTGGGCCTAAGCCCTA
* * *
67665348 TTCAGTATCTGTAC-GATTTGGGCCTAAGCCCTA
1 TACAGTATCAGTACAG-TCTGGGCCTAAGCCCTA
67665381 TACAGTATCAGTACAGTCTGGGCCTAAGCCCTA
1 TACAGTATCAGTACAGTCTGGGCCTAAGCCCTA
*
67665414 TACAGTAGCAGTA
1 TACAGTATCAGTA
67665427 TGGGCCTAAG
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
32 1 0.02
33 64 0.97
34 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.26
Consensus pattern (33 bp):
TACAGTATCAGTACAGTCTGGGCCTAAGCCCTA
Found at i:67665430 original size:28 final size:29
Alignment explanation
Indices: 67665366--67665448 Score: 96
Period size: 28 Copynumber: 2.8 Consensus size: 29
67665356 CTGTACGATT
*
67665366 TGGGCCTAAGCCCTATACAGTATCAGTACAGTC
1 TGGGCCTAAGCCCTATACAG--T-AG-ACAGTA
67665399 TGGGCCTAAGCCCTATACAGTAG-CAGTA
1 TGGGCCTAAGCCCTATACAGTAGACAGTA
* *
67665427 TGGGCCTAAGCCCAATGCAGTA
1 TGGGCCTAAGCCCTATACAGTA
67665449 ACAATATAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
28 24 0.51
30 2 0.04
31 1 0.02
33 20 0.43
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.22
Consensus pattern (29 bp):
TGGGCCTAAGCCCTATACAGTAGACAGTA
Found at i:67665875 original size:27 final size:27
Alignment explanation
Indices: 67665813--67665877 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
67665803 GGGCATAATC
* *
67665813 ATCATTTTACCATACAGGGGTATTACG
1 ATCATTTTACCATACAAGGGCATTACG
* *
67665840 ATCACTTTACCCTACAAGGGCATTACG
1 ATCATTTTACCATACAAGGGCATTACG
* *
67665867 GTCTTTTTACC
1 ATCATTTTACC
67665878 TATTAGGGGC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (27 bp):
ATCATTTTACCATACAAGGGCATTACG
Found at i:67666078 original size:54 final size:54
Alignment explanation
Indices: 67665938--67666135 Score: 195
Period size: 54 Copynumber: 3.6 Consensus size: 54
67665928 ACAAACCAAT
* * * *
67665938 GGTATTTCAGTAATTTTGCAAACCAATGGTATTTCTATAATTTTTAGAAAGTTAAG
1 GGTATTTCAGTAATTTTTCAAATCAAGGGTATTTCTATAA-TTTTA-AAAATTAAG
* * * **
67665994 GGTATTTCTGTAATTATGT-AAATCAGGGGTATTTCTATAATTTTCCAAATTAAG
1 GGTATTTCAGTAATT-TTTCAAATCAAGGGTATTTCTATAATTTTAAAAATTAAG
* * * *
67666048 GGTATTTCAATAATTTTTCAAATTAAGGGTATTT-TGGTAATTTTAAAAATTGAG
1 GGTATTTCAGTAATTTTTCAAATCAAGGGTATTTCT-ATAATTTTAAAAATTAAG
* *
67666102 GGTATTTCAGTAATTTTACAAGTCATA-GGTATTT
1 GGTATTTCAGTAATTTTTCAAATCA-AGGGTATTT
67666136 TGGTAAGTTT
Statistics
Matches: 116, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
53 3 0.03
54 75 0.65
55 5 0.04
56 32 0.28
57 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.43
Consensus pattern (54 bp):
GGTATTTCAGTAATTTTTCAAATCAAGGGTATTTCTATAATTTTAAAAATTAAG
Found at i:67666119 original size:27 final size:27
Alignment explanation
Indices: 67665938--67666122 Score: 158
Period size: 27 Copynumber: 6.8 Consensus size: 27
67665928 ACAAACCAAT
* ** *
67665938 GGTATTTCAGTAATTTTGCAAACCAAT
1 GGTATTTCAGTAATTTTACAAATTAAG
*
67665965 GGTATTTCTA-TAATTTTTAGAAAGTTAAG
1 GGTATTTC-AGTAA-TTTTACAAA-TTAAG
* * ** * *
67665994 GGTATTTCTGTAATTATGTAAATCAGG
1 GGTATTTCAGTAATTTTACAAATTAAG
*
67666021 GGTATTTCTA-TAATTTTCCAAATTAAG
1 GGTATTTC-AGTAATTTTACAAATTAAG
* *
67666048 GGTATTTCAATAATTTTTCAAATTAAG
1 GGTATTTCAGTAATTTTACAAATTAAG
** * *
67666075 GGTATTTTGGTAATTTTAAAAATTGAG
1 GGTATTTCAGTAATTTTACAAATTAAG
67666102 GGTATTTCAGTAATTTTACAA
1 GGTATTTCAGTAATTTTACAA
67666123 GTCATAGGTA
Statistics
Matches: 125, Mismatches: 27, Indels: 12
0.76 0.16 0.07
Matches are distributed among these distances:
26 1 0.01
27 97 0.78
28 14 0.11
29 13 0.10
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.43
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAATTAAG
Found at i:67666133 original size:81 final size:83
Alignment explanation
Indices: 67665938--67666135 Score: 210
Period size: 81 Copynumber: 2.4 Consensus size: 83
67665928 ACAAACCAAT
* * * * *
67665938 GGTATTTCAGTAATTTTGCAAACCAATGGTATTTCTATAATTTTTAGAAAGTTAAGGGTATTTCT
1 GGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAATAATTTTTACAAAGTTAAGGGTATTTCT
**
67666003 GTAATTATGTAAATCAGG
66 GTAATTATAAAAATCAGG
* *
67666021 GGTATTTCTA-TAATTTTCCAAATTAAGGGTATTTCAATAATTTTT-CAAA-TTAAGGGTATTT-
1 GGTATTTC-AGTAATTTTACAAATCAAGGGTATTTCAATAATTTTTACAAAGTTAAGGGTATTTC
* *
67666082 TGGTAATTTTAAAAAT-TGAG
65 T-GTAATTATAAAAATCAG-G
*
67666102 GGTATTTCAGTAATTTTACAAGTCATA-GGTATTT
1 GGTATTTCAGTAATTTTACAAATCA-AGGGTATTT
67666136 TGGTAAGTTT
Statistics
Matches: 97, Mismatches: 13, Indels: 12
0.80 0.11 0.10
Matches are distributed among these distances:
80 3 0.03
81 51 0.53
82 4 0.04
83 38 0.39
84 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.43
Consensus pattern (83 bp):
GGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAATAATTTTTACAAAGTTAAGGGTATTTCT
GTAATTATAAAAATCAGG
Found at i:67666136 original size:54 final size:53
Alignment explanation
Indices: 67665938--67666226 Score: 179
Period size: 54 Copynumber: 5.3 Consensus size: 53
67665928 ACAAACCAAT
* * * * *
67665938 GGTATTTCAGTAATTTTGCAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTTAAG
1 GGTATTTCAGTAATTTTACAAATCAA-GGTATTT-TGGTAA-TTTTACAAA-TTGAG
* * ** * * * *
67665994 GGTATTTCTGTAATTATGTAAATCAGGGGTATTTCT-ATAATTTTCCAAATTAAG
1 GGTATTTCAGTAATTTTACAAATCA-AGGTATTT-TGGTAATTTTACAAATTGAG
* * * *
67666048 GGTATTTCAATAATTTTTCAAATTAAGGGTATTTTGGTAATTTTAAAAATTGAG
1 GGTATTTCAGTAATTTTACAAATCAA-GGTATTTTGGTAATTTTACAAATTGAG
* * * **
67666102 GGTATTTCAGTAATTTTACAAGTCATAGGTATTTTGGTAAGTTTATAGGTTGAG
1 GGTATTTCAGTAATTTTACAAATCA-AGGTATTTTGGTAATTTTACAAATTGAG
* ** * * * * *
67666156 GGTGTTTTGGTCATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACT-AGG
1 GGTATTTCAGTAATTTTACAAATCA-AGGTATTTTGGTAATTTTACAAATTGA-G
**
67666210 GGTATTTTGGTAATTTT
1 GGTATTTCAGTAATTTT
67666227 GTAAACCAAG
Statistics
Matches: 185, Mismatches: 43, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
53 2 0.01
54 141 0.76
55 8 0.04
56 34 0.18
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.43
Consensus pattern (53 bp):
GGTATTTCAGTAATTTTACAAATCAAGGTATTTTGGTAATTTTACAAATTGAG
Found at i:67666141 original size:27 final size:27
Alignment explanation
Indices: 67666031--67666226 Score: 127
Period size: 27 Copynumber: 7.3 Consensus size: 27
67666021 GGTATTTCTA
* ***
67666031 TAATTTTCCAAAT-TAAGGGTATTTCAA
1 TAATTTTACAAATCT-AGGGTATTTTGG
*
67666058 TAATTTTTCAAAT-TAAGGGTATTTTGG
1 TAATTTTACAAATCT-AGGGTATTTTGG
* **
67666085 TAATTTTAAAAAT-TGAGGGTATTTCAG
1 TAATTTTACAAATCT-AGGGTATTTTGG
*
67666112 TAATTTTACAAGTCATA-GGTATTTTGG
1 TAATTTTACAAATC-TAGGGTATTTTGG
* * ** *
67666139 TAAGTTTATAGGT-TGAGGGTGTTTTGG
1 TAATTTTACAAATCT-AGGGTATTTTGG
* * *
67666166 TCATTTCACAAA-CCAGGGGTATTTTGG
1 TAATTTTACAAATCTA-GGGTATTTTGG
67666193 TAATTTTACAAA-CTAGGGGTATTTTGG
1 TAATTTTACAAATCTA-GGGTATTTTGG
67666220 TAATTTT
1 TAATTTT
67666227 GTAAACCAAG
Statistics
Matches: 135, Mismatches: 28, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
25 1 0.01
26 2 0.01
27 130 0.96
28 1 0.01
29 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (27 bp):
TAATTTTACAAATCTAGGGTATTTTGG
Found at i:67666232 original size:27 final size:27
Alignment explanation
Indices: 67666155--67666242 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 27
67666145 TATAGGTTGA
* * *
67666155 GGGTGTTTTGGTCATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
67666182 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
67666209 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
67666236 GGGTATT
1 GGGTATT
67666243 CAGTAATTCT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.26, C:0.10, G:0.25, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:67666302 original size:27 final size:27
Alignment explanation
Indices: 67666240--67666314 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
67666230 AACCAAGGGT
67666240 ATTCAGTAATTCTACCCTACAAGAGCA
1 ATTCAGTAATTCTACCCTACAAGAGCA
* * * *
67666267 TTTCAGTAATTCTACCCTATAGGGGCA
1 ATTCAGTAATTCTACCCTACAAGAGCA
* * *
67666294 ATTCCGTAATACTAGCCTACA
1 ATTCAGTAATTCTACCCTACA
67666315 GATATGAGAC
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.29
Consensus pattern (27 bp):
ATTCAGTAATTCTACCCTACAAGAGCA
Found at i:67692389 original size:53 final size:54
Alignment explanation
Indices: 67692280--67692412 Score: 187
Period size: 53 Copynumber: 2.5 Consensus size: 54
67692270 AAAATTATTC
* * * * * *
67692280 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCG
67692334 AAATACCCTTGTAGGGT-GAAATACCGAAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCG
* *
67692387 AAATACCCTTGTACGATAGAAATACC
1 AAATACCCTTGTAGGGTAGAAATACC
67692413 CCTTTAGGTT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
53 46 0.66
54 24 0.34
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (54 bp):
AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCG
Found at i:67692412 original size:27 final size:27
Alignment explanation
Indices: 67692280--67692399 Score: 179
Period size: 27 Copynumber: 4.5 Consensus size: 27
67692270 AAAATTATTC
* *
67692280 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
67692307 AAATACCCTTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
67692334 AAATACCCTTGTAGGGT-GAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
67692360 AAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
67692387 AAATACCCTTGTA
1 AAATACCCTTGTA
67692400 CGATAGAAAT
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 22 0.27
27 61 0.73
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:67692879 original size:22 final size:22
Alignment explanation
Indices: 67692849--67692910 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 22
67692839 GATTATTCTG
* *
67692849 ATTATGGCTTTGCGCCAACCTA
1 ATTATGGCTCTGTGCCAACCTA
67692871 CA-TATGGCTCTGTGCCAACCTA
1 -ATTATGGCTCTGTGCCAACCTA
*
67692893 ATTATGGCTGTGTGCCAA
1 ATTATGGCTCTGTGCCAA
67692911 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.31
Consensus pattern (22 bp):
ATTATGGCTCTGTGCCAACCTA
Found at i:67693099 original size:27 final size:26
Alignment explanation
Indices: 67693069--67693176 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 26
67693059 ATTATGTTAA
* *
67693069 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
*
67693096 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
*
67693123 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
67693150 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
67693176 G
1 G
67693177 CAGCCATGAT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 13 0.18
27 52 0.72
28 7 0.10
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:67693342 original size:25 final size:25
Alignment explanation
Indices: 67693304--67693361 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
67693294 ATTTTGATTC
* * *
67693304 TGATTTTGTTACCTGATACTAATTT
1 TGATTCTGTCACCTAATACTAATTT
* *
67693329 TGATTCTGTCACCTAATTCTGATTT
1 TGATTCTGTCACCTAATACTAATTT
67693354 TGATTCTG
1 TGATTCTG
67693362 ATTCTGATTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.50
Consensus pattern (25 bp):
TGATTCTGTCACCTAATACTAATTT
Found at i:67693361 original size:12 final size:12
Alignment explanation
Indices: 67693344--67693393 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
67693334 CTGTCACCTA
67693344 ATTCTGATTTTG
1 ATTCTGATTTTG
*
67693356 ATTCTGATTCTG
1 ATTCTGATTTTG
*
67693368 ATTCTCATTTTG
1 ATTCTGATTTTG
67693380 ATTCT-AGTTTTG
1 ATTCTGA-TTTTG
67693392 AT
1 AT
67693394 AATGTTTCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
11 1 0.03
12 33 0.97
ACGTcount: A:0.18, C:0.12, G:0.14, T:0.56
Consensus pattern (12 bp):
ATTCTGATTTTG
Found at i:67693363 original size:6 final size:6
Alignment explanation
Indices: 67693344--67693384 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
67693334 CTGTCACCTA
* * *
67693344 ATTCTG ATTTTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
67693385 AGTTTTGATA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.15, G:0.12, T:0.56
Consensus pattern (6 bp):
ATTCTG
Found at i:67694784 original size:47 final size:47
Alignment explanation
Indices: 67694714--67695341 Score: 974
Period size: 47 Copynumber: 13.4 Consensus size: 47
67694704 CCCTTCGGGA
* *
67694714 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * * *
67694761 CTTACCACATATACACACCTTCACATCCATCACATCT-GCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACAT-TGGCCATTCGGC
*
67694808 CTTATCTCATATATACACTTTCACA-TCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67694854 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCA-TTCGGC
67694901 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67694948 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67694995 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67695042 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGCC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67695089 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* **
67695136 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGAT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
** *
67695183 CTTATCACATATATACACTTTCACATTCATCATGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67695230 CTTATGACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67695277 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67695324 CTTATCACATATACACAC
1 CTTATCACATATATACAC
67695342 CTTGTACATC
Statistics
Matches: 529, Mismatches: 47, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.00
46 42 0.08
47 483 0.91
48 3 0.01
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Done.