Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 205 of 352
Found at i:67699341 original size:40 final size:40
Alignment explanation
Indices: 67699277--67699546 Score: 479
Period size: 40 Copynumber: 6.8 Consensus size: 40
67699267 ATTTTGTCCA
*
67699277 AGCACGAATGC-CTTCGGGGCTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
67699316 AGCATGAATGCTCTTTGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
67699356 AGCACGAATGCTCTTCGGAACTTAGCCCAGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
*
67699396 AGCACGAATGCTTTTCGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
67699436 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
67699476 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
67699516 AGCACGAATGCTCTTCGGGACTTAGCCCGGA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGA
67699547 ATAACATACT
Statistics
Matches: 219, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 10 0.05
40 209 0.95
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
Found at i:67701465 original size:47 final size:47
Alignment explanation
Indices: 67701402--67702030 Score: 988
Period size: 47 Copynumber: 13.4 Consensus size: 47
67701392 CCCTTCGGGA
* *
67701402 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * * *
67701449 CTTATCACATATATACACCTTCACATCCATCACATCGACCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67701496 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67701543 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67701590 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67701637 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67701684 TTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67701731 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * **
67701778 ATTATCACATATATCCACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67701825 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67701872 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
67701919 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
67701966 CTTATCACATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67702013 CTTATCAAATATACACAC
1 CTTATCACATATATACAC
67702031 CTTGTACATC
Statistics
Matches: 531, Mismatches: 51, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 531 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:67701552 original size:22 final size:22
Alignment explanation
Indices: 67701524--67701646 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
67701514 TTTCACATTC
67701524 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
67701546 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
* *
67701570 CATCACGTTGGCCACTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
** * *
67701593 ATCACATATATACACATTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
67701617 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
67701640 ATCACAT
1 ATCACAT
67701647 ATATACACTT
Statistics
Matches: 69, Mismatches: 22, Indels: 20
0.62 0.20 0.18
Matches are distributed among these distances:
22 28 0.41
23 10 0.14
24 10 0.14
25 21 0.30
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:67705899 original size:40 final size:41
Alignment explanation
Indices: 67705840--67705991 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
67705830 CATTTGAATG
* * *
67705840 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
67705880 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
67705920 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
67705960 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
67705992 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:67706003 original size:80 final size:80
Alignment explanation
Indices: 67705840--67706011 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
67705830 CATTTGAATG
* * * * *
67705840 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
67705905 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
67705920 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
67705984 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
67706000 ATATCC-GGCTAA
1 ATATCCGGGCTAA
67706012 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 71 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:67714049 original size:40 final size:41
Alignment explanation
Indices: 67713990--67714141 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
67713980 CATTTGAATG
* * *
67713990 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
67714030 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
67714070 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
67714110 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
67714142 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:67714153 original size:80 final size:80
Alignment explanation
Indices: 67713990--67714161 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
67713980 CATTTGAATG
* * * * *
67713990 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
67714055 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
67714070 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
67714134 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
67714150 ATATCC-GGCTAA
1 ATATCCGGGCTAA
67714162 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 71 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:67720529 original size:20 final size:20
Alignment explanation
Indices: 67720475--67720537 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
67720465 GAGGGACACA
* *
67720475 GCCTGGAGGCACGAACATGT
1 GCCTGGAGGCACGAGCGTGT
67720495 GCCTGGAGGCACGAGCGTGT
1 GCCTGGAGGCACGAGCGTGT
67720515 GCCTGGAGGCACGAGCGTGT
1 GCCTGGAGGCACGAGCGTGT
67720535 GCC
1 GCC
67720538 CTTATTTTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.17, C:0.27, G:0.41, T:0.14
Consensus pattern (20 bp):
GCCTGGAGGCACGAGCGTGT
Found at i:67736341 original size:29 final size:29
Alignment explanation
Indices: 67736299--67736361 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
67736289 ATTTTCAGCC
67736299 TTTCTTGAAATGAAGCACAACTTACTCAA
1 TTTCTTGAAATGAAGCACAACTTACTCAA
67736328 TTTCTTGAAATGAAGCACAACTTACTCAA
1 TTTCTTGAAATGAAGCACAACTTACTCAA
67736357 TTTCT
1 TTTCT
67736362 CAATTTCTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.35
Consensus pattern (29 bp):
TTTCTTGAAATGAAGCACAACTTACTCAA
Found at i:67746125 original size:46 final size:46
Alignment explanation
Indices: 67746058--67746320 Score: 220
Period size: 46 Copynumber: 5.7 Consensus size: 46
67746048 TGTAACCCGC
* * *
67746058 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGTTCACAT
*
67746104 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC--A-GAC--GTTCACAT
* * * *
67746154 CTCA-CA--G-ACTCAGACTCAACTCAACGAGTTTAGACGTTCACAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGTTCACAT
* *
67746197 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ATAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC--A-GAC--GTTCACAT
* * * *
67746247 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGTTCACAT
* *
67746290 ACATAAGTGAACTTGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
67746321 TTCGGATGCC
Statistics
Matches: 174, Mismatches: 23, Indels: 40
0.73 0.10 0.17
Matches are distributed among these distances:
42 8 0.05
43 8 0.05
44 5 0.03
45 5 0.03
46 76 0.44
47 46 0.26
48 5 0.03
49 5 0.03
50 8 0.05
51 8 0.05
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACGTTCACAT
Found at i:67746180 original size:93 final size:93
Alignment explanation
Indices: 67746065--67746330 Score: 435
Period size: 93 Copynumber: 2.9 Consensus size: 93
67746055 CGCCCATAAG
* *
67746065 CGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
67746130 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* * *
67746158 C-AGACTCAGACTCAACTCAACGAGTTTAGACGTTCACATCCATAAGTGAACTCGGACTCAACTC
1 CGA-ACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTC
*
67746222 AACGAGCTCGGATGCCTAGTTATATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
* *
67746251 CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATACATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67746316 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
67746331 CAAATATCCG
Statistics
Matches: 159, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
92 1 0.01
93 157 0.99
94 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:67746267 original size:47 final size:47
Alignment explanation
Indices: 67746112--67746274 Score: 176
Period size: 47 Copynumber: 3.5 Consensus size: 47
67746102 ATCCATAAGT
67746112 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* ** * * *
67746159 -AGACTCAGACTCAACTCAACGAG-T-TTA-GAC--GTTCACATCCATAAGT
1 GA-ACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
*
67746205 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTATATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
67746252 GAACTCGGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
67746275 TTCAGACGTT
Statistics
Matches: 92, Mismatches: 13, Indels: 22
0.72 0.10 0.17
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 3 0.03
45 3 0.03
46 22 0.24
47 45 0.49
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:67751816 original size:47 final size:47
Alignment explanation
Indices: 67751763--67751938 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 47
67751753 TTCCCATAAG
*
67751763 CGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA
* * * * *
67751810 CGAACTCGGACTCAATTCAACGAGTTC-GA--AC--GTTCGCATCCATAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA
*
67751855 GTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA
1 -CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA
* *
67751903 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA
1 CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTA
67751939 AATATCTGAA
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 26 0.24
47 61 0.57
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (47 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:67751871 original size:93 final size:93
Alignment explanation
Indices: 67751756--67751930 Score: 314
Period size: 93 Copynumber: 1.9 Consensus size: 93
67751746 TGTAACTTTC
67751756 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
*
67751821 TCAATTCAACGAGTTCGAACGTTCGCAT
66 TCAACTCAACGAGTTCGAACGTTCGCAT
* * *
67751849 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCATGAACTCGGAC
1 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
67751914 TCAACTCAACGAGTTCG
66 TCAACTCAACGAGTTCG
67751931 GATGCCTAAA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 78 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
TCAACTCAACGAGTTCGAACGTTCGCAT
Found at i:67760619 original size:28 final size:28
Alignment explanation
Indices: 67760585--67760641 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
67760575 TCCTTAAGAG
67760585 AACTGAGGCTTAGGCACATAAGCCTTAT
1 AACTGAGGCTTAGGCACATAAGCCTTAT
67760613 AACTGAGGCTTAGGCACATAAGCCTTAT
1 AACTGAGGCTTAGGCACATAAGCCTTAT
67760641 A
1 A
67760642 GTTAATTGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (28 bp):
AACTGAGGCTTAGGCACATAAGCCTTAT
Found at i:67762033 original size:28 final size:29
Alignment explanation
Indices: 67761979--67762040 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
67761969 GAAAGCATGA
*
67761979 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
* *
67762008 ATATGAATGAGA-TTGGGCCTAGTGGGTC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
67762036 ATATG
1 ATATG
67762041 TATATATGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 19 0.63
29 11 0.37
ACGTcount: A:0.26, C:0.11, G:0.32, T:0.31
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCTAATGGGCC
Found at i:67770573 original size:44 final size:43
Alignment explanation
Indices: 67770478--67770582 Score: 131
Period size: 44 Copynumber: 2.4 Consensus size: 43
67770468 TCAGCTATAT
* * *
67770478 GAGGCACTAAGCGTGCTATACCGACTTAGCTTCGGCTAATTGA
1 GAGGCACTAAGTGTGCAATACCGACTTAGCTTCGGCTAACTGA
* *
67770521 GATGGCACTAAGTGTGCAATACCGACTTTGCTTCGGCTAACTGTT
1 GA-GGCACTAAGTGTGCAATACCGACTTAGCTTCGGCTAACTG-A
67770566 GCA-GCACTAAGTGTGCA
1 G-AGGCACTAAGTGTGCA
67770583 GATGTTCAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
43 2 0.04
44 50 0.93
45 1 0.02
46 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (43 bp):
GAGGCACTAAGTGTGCAATACCGACTTAGCTTCGGCTAACTGA
Found at i:67781715 original size:64 final size:64
Alignment explanation
Indices: 67781635--67781818 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
67781625 AGACATTATG
* * *
67781635 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
67781699 ATGTAGCTAGGTCGCATGTGTGGTTC-ATGGTGAAGGACACCATGTAGAAAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGTGGTACTAT-GT---GTACACCATGTAGACAAGAGAGCTACGAGA
67781763 TAA
62 TAA
* * * *
67781766 AT-TGGCTCGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
67781819 CGAACTATAT
Statistics
Matches: 98, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 25 0.26
66 20 0.20
67 31 0.32
68 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67788946 original size:40 final size:39
Alignment explanation
Indices: 67788856--67789040 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
67788846 TTGAATGATG
* * * * *
67788856 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCACA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
67788896 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
67788936 TTCGGGCTAAGCCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
67788975 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
67789016 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
67789041 AACAAGTAGC
Statistics
Matches: 121, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
39 33 0.27
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67789062 original size:79 final size:79
Alignment explanation
Indices: 67788909--67789073 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
67788899 GGACTAAGAT
** ** *
67788909 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCAAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACAAGTTACTAA
*
67788974 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
67788988 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACAAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTTGAACAAGTTA-C
* *
67789051 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
67789067 CCGAAGG
1 CCGAAGG
67789074 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACAAGTTACTAA
ATCCGGGTTAAATC
Found at i:67792087 original size:44 final size:41
Alignment explanation
Indices: 67791984--67792105 Score: 127
Period size: 42 Copynumber: 2.9 Consensus size: 41
67791974 GCAATCAAAC
* * *
67791984 ATTGATGCCATTGTCCCAGATAGGGTCTTACACAAAATCAG
1 ATTGATGCCAATGTCCCAGATATGGTCTTACACAAAAACAG
* * *
67792025 ATACGATGCCGATGTCCCAGACATGGTCTTACACATAAAACAG
1 AT-TGATGCCAATGTCCCAGATATGGTCTTACACA-AAAACAG
* * *
67792068 AAGTTGATGCCAACGTCCCAGATGTGGTCTTGCACAAA
1 -A-TTGATGCCAATGTCCCAGATATGGTCTTACACAAA
67792106 GACACATATC
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
41 2 0.03
42 27 0.42
43 8 0.12
44 27 0.42
45 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (41 bp):
ATTGATGCCAATGTCCCAGATATGGTCTTACACAAAAACAG
Found at i:67793350 original size:54 final size:54
Alignment explanation
Indices: 67793278--67793587 Score: 453
Period size: 54 Copynumber: 5.7 Consensus size: 54
67793268 CACATTATTA
* *
67793278 AAATACCCCTTTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTG
*
67793332 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTG
* *
67793386 AAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTG
* *
67793440 AAATACCCCTGTAGGGTAGAATTATTGAAATACCCTTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTG
* * * * *
67793494 AAATACCCCTTATAGTGTAGAATTA-CTGAAATACCCCTGTAGGGTAGAAATACCG
1 AAATACCCC-TGTAGGGTAGAATTATC-GAAATACCCTTGTAGGGTAGAATTACTG
* *
67793549 AAATACCCATGTAGGGTAGAATTA-CCAATATACCCTTGT
1 AAATACCCCTGTAGGGTAGAATTATCGAA-ATACCCTTGT
67793588 GAGGTAAAAT
Statistics
Matches: 231, Mismatches: 22, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
53 2 0.01
54 184 0.80
55 45 0.19
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (54 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTG
Found at i:67793593 original size:27 final size:26
Alignment explanation
Indices: 67793278--67793587 Score: 370
Period size: 27 Copynumber: 11.5 Consensus size: 26
67793268 CACATTATTA
*
67793278 AAATACCCCTT-TAAGGTAGAATTATCG
1 AAATA-CCCTTGTAGGGTAGAATTA-CG
67793305 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTAC-G
*
67793332 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTA-CG
*
67793359 AAATACCCTTGTAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTAC-G
* *
67793386 AAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTA-CG
67793413 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTAC-G
* *
67793440 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTA-CG
*
67793467 AAATACCCTTGTAGGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTA-CG
* *
67793494 AAATACCCCTTATAGTGTAGAATTACTG
1 AAATA-CCCTTGTAGGGTAGAATTAC-G
* *
67793522 AAATACCCCTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTA-CG
* *
67793549 AAATACCCATGTAGGGTAGAATTACC
1 AAATACCCTTGTAGGGTAGAATTACG
67793575 AATATACCCTTGT
1 AA-ATACCCTTGT
67793588 GAGGTAAAAT
Statistics
Matches: 249, Mismatches: 23, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
26 11 0.04
27 212 0.85
28 26 0.10
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (26 bp):
AAATACCCTTGTAGGGTAGAATTACG
Found at i:67793637 original size:136 final size:135
Alignment explanation
Indices: 67793278--67793600 Score: 352
Period size: 136 Copynumber: 2.4 Consensus size: 135
67793268 CACATTATTA
* * * * * * *
67793278 AAATACCCCTTTAAGGTAGAATTA-TCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCT
1 AAATACCCATGTAGGGTAGAATTACTC-AAATACCCCTGTAGGGTAAAATTATTCAAATA-CCCT
* *
67793342 -GTAGGGTAGAATTA-TCGAAATA-CCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTA
64 AG-AGGGTAGAATGACT-GAAATACCCCTTATAGGGTAGAATTACTAAAATACCCCTGTAAGGTA
*
67793404 GAATTACCG
127 GAAATACCG
* * * * *
67793413 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCTTG
1 AAATACCCATGTAGGGTAGAATTACTCAAATACCCCTGTAGGGTAAAATTATTCAAATACCCTAG
* * * * *
67793478 TAGGGTAGAATTATTGAAATACCCCTTATAGTGTAGAATTACTGAAATACCCCTGTAGGGTAGAA
66 -AGGGTAGAATGACTGAAATACCCCTTATAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAA
67793543 ATACCG
130 ATACCG
*
67793549 AAATACCCATGTAGGGTAGAATTAC-CAATATACCCTTGT-GAGGTAAAATTAT
1 AAATACCCATGTAGGGTAGAATTACTCAA-ATACCCCTGTAG-GGTAAAATTAT
67793601 CATTTTACCC
Statistics
Matches: 167, Mismatches: 15, Indels: 11
0.87 0.08 0.06
Matches are distributed among these distances:
134 4 0.02
135 74 0.44
136 89 0.53
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.28
Consensus pattern (135 bp):
AAATACCCATGTAGGGTAGAATTACTCAAATACCCCTGTAGGGTAAAATTATTCAAATACCCTAG
AGGGTAGAATGACTGAAATACCCCTTATAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAAA
TACCG
Found at i:67794819 original size:27 final size:26
Alignment explanation
Indices: 67794784--67794895 Score: 102
Period size: 27 Copynumber: 4.2 Consensus size: 26
67794774 AGCATGGTTG
*
67794784 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
67794810 CCAGATACAGATAATCGT-AGGAGAGCCA
1 CCAGA-ACAGATAAT-GTGA-CAGAGCCA
*
67794838 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
** *
67794865 CCAGATTAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGATAA-TGTGACAG-AGCCA
67794892 CCAG
1 CCAG
67794896 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
26 7 0.10
27 51 0.70
28 15 0.21
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:67794876 original size:54 final size:54
Alignment explanation
Indices: 67794784--67794895 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
67794774 AGCATGGTTG
*
67794784 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTAGGAG-AGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGT-GGAGTAGCCA
* * * *
67794838 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-TAGATAATTGTGGCGTAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGAGTAGCCA
67794892 CCAG
1 CCAG
67794896 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.06
54 30 0.59
55 18 0.35
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGAGTAGCCA
Found at i:67797961 original size:46 final size:46
Alignment explanation
Indices: 67797911--67798086 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
67797901 TGGTTGAGCA
67797911 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67797957 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67798002 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67798050 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67798087 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67798067 original size:93 final size:93
Alignment explanation
Indices: 67797908--67798079 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67797898 GGATGGTTGA
* *
67797908 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67797973 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
67798001 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67798066 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
67798080 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67805494 original size:46 final size:46
Alignment explanation
Indices: 67805444--67805616 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
67805434 TGGTTGAGCA
67805444 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67805490 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
67805535 CATCCGAAGTAC--TCAGTTGAGTCCGAGTTCACTTATGGATGCGAA--
1 --TCCGAACT-CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67805580 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67805617 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 13, Indels: 26
0.72 0.09 0.18
Matches are distributed among these distances:
42 3 0.03
43 10 0.10
44 24 0.24
45 3 0.03
46 46 0.45
47 9 0.09
48 1 0.01
49 4 0.04
50 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67807277 original size:27 final size:27
Alignment explanation
Indices: 67807246--67807530 Score: 256
Period size: 27 Copynumber: 10.6 Consensus size: 27
67807236 TTAGTTTACC
*
67807246 AATTACCCAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* *** *
67807273 AATTACTAAAATACTATTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* *
67807300 AATCACCAAAATA-TCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
** **
67807326 AATTACCAAAA-ACCGATTGGTTTACCAA
1 AATTACCAAAATACC-CCTGGTTT-GTAA
67807354 AATTACCAAAA-ACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* * * * *
67807380 AATTACTAAAATACGCTTTGTTTATAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* *
67807407 GATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
67807434 AATTACC-AAATACCCCTGGTTTGTAAA
1 AATTACCAAAATACCCCTGGTTTGT-AA
* * *
67807461 AATTATCAAAATTACCCTTAGTTTGTAA
1 AATTACCAAAA-TACCCCTGGTTTGTAA
* * * *
67807489 AATTACCAAAATA-CCTTGATTTATGA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
67807515 AATTACTAAAATACCC
1 AATTACCAAAATACCC
67807531 TCGACCTGTA
Statistics
Matches: 207, Mismatches: 43, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
25 1 0.00
26 69 0.33
27 94 0.45
28 31 0.15
29 12 0.06
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTGTAA
Found at i:67807381 original size:80 final size:79
Alignment explanation
Indices: 67807290--67807503 Score: 225
Period size: 80 Copynumber: 2.6 Consensus size: 79
67807280 AAAATACTAT
* * * * *
67807290 TGGTTTATAAAATCACCAAAATATCC-TGGTTTGTAAAATTACCAAAA-ACCGATTGGTTTACCA
1 TGGTTTGTAAAATTACCAAAATA-CCTTAGTTTGTAAAATTACCAAAATACC-ACTAGTTT-CCA
67807353 AAATTACCAAAAACCCC
63 AAATTACCAAAAACCCC
* * * * * **
67807370 TGGTTTGTAAAATTACTAAAATACGCTTTGTTTATAAGATTACCAAAATACCCCTAGTTTGTAAA
1 TGGTTTGTAAAATTACCAAAATAC-CTTAGTTTGTAAAATTACCAAAATACCACTAGTTTCCAAA
*
67807435 ATTACCAAATACCCC
65 ATTACCAAAAACCCC
*
67807450 TGGTTTGTAAAAATTATCAAAATTACCCTTAGTTTGTAAAATTACCAAAATACC
1 TGGTTTGT-AAAATTACCAAAA-TA-CCTTAGTTTGTAAAATTACCAAAATACC
67807504 TTGATTTATG
Statistics
Matches: 111, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
79 1 0.01
80 46 0.41
81 34 0.31
82 29 0.26
83 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (79 bp):
TGGTTTGTAAAATTACCAAAATACCTTAGTTTGTAAAATTACCAAAATACCACTAGTTTCCAAAA
TTACCAAAAACCCC
Found at i:67807454 original size:107 final size:106
Alignment explanation
Indices: 67807239--67807530 Score: 317
Period size: 107 Copynumber: 2.7 Consensus size: 106
67807229 GAATACTTTA
*
67807239 GTTTACC--AATTACCCAAATACCCCTGGTTTGTAAAATTACTAAAATA-CTATTGGTTTATAAA
1 GTTTACCAAAATTA-CCAAAAACCCCTGGTTTGTAAAATTACTAAAATACCT-TT-GTTTAT-AA
* * * *
67807301 ATCACCAAAATA-TCCTGGTTTGTAAAATTACCAAAAACCGATTG
62 ATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAAACCGACTG
67807345 GTTTACCAAAATTACCAAAAACCCCTGGTTTGTAAAATTACTAAAATACGCTTTGTTTATAAGAT
1 GTTTACCAAAATTACCAAAAACCCCTGGTTTGTAAAATTACTAAAATAC-CTTTGTTTATAA-AT
* *
67807410 TACCAAAATACCCCTAGTTTGTAAAATTACCAAATACC-CCTG
64 TACCAAAATACCCCTAGTTTGTAAAATTACCAAAAACCGACTG
*** * * * *
67807452 GTTTGTAAAAATTATCAAAATTACCCTTAGTTTGTAAAATTACCAAAATACC-TTGATTTATGAA
1 GTTTACCAAAATTACCAAAA--ACCCCTGGTTTGTAAAATTACTAAAATACCTTTG-TTTAT-AA
*
67807516 ATTACTAAAATACCC
62 ATTACCAAAATACCC
67807531 TCGACCTGTA
Statistics
Matches: 161, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
106 9 0.06
107 71 0.44
108 51 0.32
109 30 0.19
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (106 bp):
GTTTACCAAAATTACCAAAAACCCCTGGTTTGTAAAATTACTAAAATACCTTTGTTTATAAATTA
CCAAAATACCCCTAGTTTGTAAAATTACCAAAAACCGACTG
Found at i:67807553 original size:27 final size:27
Alignment explanation
Indices: 67807514--67807586 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
67807504 TTGATTTATG
67807514 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACTAAAATACCCTCGACCTGTA
* * *
67807541 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGACCTGTA
* *
67807568 AAATTTACCAAAGTACCCT
1 AAA-TTACTAAAATACCCT
67807587 TGATTACAGA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
27 27 0.71
28 11 0.29
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGACCTGTA
Found at i:67807716 original size:27 final size:26
Alignment explanation
Indices: 67807639--67807911 Score: 280
Period size: 27 Copynumber: 10.2 Consensus size: 26
67807629 GAAATCCCTT
* *
67807639 TGTAGGTAGAAATATCGAAATACCCT
1 TGTAGGTAGAAATACCGAAATACCCC
* *
67807665 TGTAGGTAGAAGTA-CTAAATACCCC
1 TGTAGGTAGAAATACCGAAATACCCC
67807690 TGTAGGGTAGAAATACCGAAATACCCC
1 TGTA-GGTAGAAATACCGAAATACCCC
* *
67807717 TATGGGTAGAAAATACCGAAATACCCC
1 TGTAGGTAG-AAATACCGAAATACCCC
* **
67807744 TGTAGGTAGAATTACTAAAATACCCC
1 TGTAGGTAGAAATACCGAAATACCCC
* **
67807770 TGTAGGGTAGAATTACTAAAAATACCCC
1 TGTA-GGTAGAAATAC-CGAAATACCCC
* *
67807798 TGTAAGGTAGAATTACCGAGAATACCCT
1 TGT-AGGTAGAAATACCGA-AATACCCC
67807826 TGTAGGTAGAAAATACCGAAATACCCC
1 TGTAGGTAG-AAATACCGAAATACCCC
* *
67807853 TGTAGGGTAGAATTACTGAAATA-CCC
1 TGTA-GGTAGAAATACCGAAATACCCC
* * *
67807879 TGTAGGTAGAATTACCGAAGTACACCT
1 TGTAGGTAGAAATACCGAAATAC-CCC
67807906 TGTAGG
1 TGTAGG
67807912 GTAAAATTAC
Statistics
Matches: 213, Mismatches: 23, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
25 29 0.14
26 52 0.24
27 84 0.39
28 47 0.22
29 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.24
Consensus pattern (26 bp):
TGTAGGTAGAAATACCGAAATACCCC
Found at i:67807848 original size:109 final size:105
Alignment explanation
Indices: 67807639--67807893 Score: 361
Period size: 109 Copynumber: 2.4 Consensus size: 105
67807629 GAAATCCCTT
* * * *
67807639 TGTAGGTAGAAATA-TCGAAATACCCTTGTAGGTAGAAGTACTAAATACCCCTGTAGGGTAGAAA
1 TGTAGGTAGAATTACT-GAAATACCCCTGTAGGTAGAATTACTAAATACCCCTGTAAGGTAGAAA
*
67807703 TACCGAAATACCCCTATGGGTAGAAAATACCGAAATACCCC
65 TACCGAAATACCCCTATAGGTAGAAAATACCGAAATACCCC
*
67807744 TGTAGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACTAAAAATACCCCTGTAAGGTAGA
1 TGTAGGTAGAATTACTGAAATACCCCTGTA-GGTAGAATTACT--AAATACCCCTGTAAGGTAGA
* * *
67807809 ATTACCGAGAATACCCTTGTAGGTAGAAAATACCGAAATACCCC
63 AATACCGA-AATACCCCTATAGGTAGAAAATACCGAAATACCCC
67807853 TGTAGGGTAGAATTACTGAAATA-CCCTGTAGGTAGAATTAC
1 TGTA-GGTAGAATTACTGAAATACCCCTGTAGGTAGAATTAC
67807894 CGAAGTACAC
Statistics
Matches: 134, Mismatches: 10, Indels: 9
0.88 0.07 0.06
Matches are distributed among these distances:
105 25 0.19
106 12 0.09
108 37 0.28
109 43 0.32
110 17 0.13
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (105 bp):
TGTAGGTAGAATTACTGAAATACCCCTGTAGGTAGAATTACTAAATACCCCTGTAAGGTAGAAAT
ACCGAAATACCCCTATAGGTAGAAAATACCGAAATACCCC
Found at i:67807931 original size:53 final size:54
Alignment explanation
Indices: 67807656--67807921 Score: 244
Period size: 53 Copynumber: 5.0 Consensus size: 54
67807646 AGAAATATCG
* *
67807656 AAATACCCTTGTAGGTAG-AAGTA-CTAAATACCCCTGTAGGGTAGAAA-TAC-C
1 AAATACCCTTGTAGGTAGAAAATACCGAAATACCCCTGTAGGGTA-AAATTACTC
* * * * *
67807707 GAAATACCCCTATGGGTAGAAAATACCGAAATACCCCTGTA-GGTAGAATTACTA
1 -AAATACCCTTGTAGGTAGAAAATACCGAAATACCCCTGTAGGGTAAAATTACTC
* * ** * *
67807761 AAATACCCCTGTAGGGTAG-AATTACTAAAAATACCCCTGTAAGGTAGAATTAC-C
1 AAATACCCTTGTA-GGTAGAAAATAC-CGAAATACCCCTGTAGGGTAAAATTACTC
* *
67807815 GAGAATACCCTTGTAGGTAGAAAATACCGAAATACCCCTGTAGGGTAGAATTACTG
1 -A-AATACCCTTGTAGGTAGAAAATACCGAAATACCCCTGTAGGGTAAAATTACTC
* * *
67807871 AAATACCC-TGTAGGTAG-AATTACCGAAGTACACCTTGTAGGGTAAAATTAC
1 AAATACCCTTGTAGGTAGAAAATACCGAAATAC-CCCTGTAGGGTAAAATTAC
67807922 CATTTTACCC
Statistics
Matches: 179, Mismatches: 23, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
52 29 0.16
53 53 0.30
54 39 0.22
55 42 0.23
56 16 0.09
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.24
Consensus pattern (54 bp):
AAATACCCTTGTAGGTAGAAAATACCGAAATACCCCTGTAGGGTAAAATTACTC
Found at i:67807933 original size:80 final size:78
Alignment explanation
Indices: 67807623--67807923 Score: 338
Period size: 80 Copynumber: 3.8 Consensus size: 78
67807613 CGATTTATAA
* * * * * *
67807623 AATTAC-GAAAT-CCCTTTGTAGGTAGAAATATCGAAATACCCTTGTAGGTAGAAGTACTAAATA
1 AATTACTGAAATACCC-CTGTAGGTAGAATTACCGAAATACCCTTGTAGGTAAAATTACCAAATA
67807686 CCCCTGTAGGGTAG
65 CCCCTGTAGGGTAG
* * * * * * * *
67807700 AAATACCGAAATACCCCTATGGGTAGAAAATACCGAAATACCCCTGTAGGTAGAATTACTAAAAT
1 AATTACTGAAATACCCCTGTAGGTAG-AATTACCGAAATACCCTTGTAGGTAAAATTAC-CAAAT
67807765 ACCCCTGTAGGGTAG
64 ACCCCTGTAGGGTAG
* *
67807780 AATTACTAAAAATACCCCTGTAAGGTAGAATTACCGAGAATACCCTTGTAGGTAGAAAATACCGA
1 AATTACT-GAAATACCCCTGT-AGGTAGAATTACCGA-AATACCCTTGTAGGTA-AAATTACC-A
67807845 AATACCCCTGTAGGGTAG
61 AATACCCCTGTAGGGTAG
*
67807863 AATTACTGAAATA-CCCTGTAGGTAGAATTACCGAAGTACACCTTGTAGGGTAAAATTACCA
1 AATTACTGAAATACCCCTGTAGGTAGAATTACCGAAATAC-CCTTGTA-GGTAAAATTACCA
67807924 TTTTACCCCT
Statistics
Matches: 192, Mismatches: 21, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
77 5 0.03
78 12 0.06
79 37 0.19
80 53 0.28
81 29 0.15
82 25 0.13
83 31 0.16
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (78 bp):
AATTACTGAAATACCCCTGTAGGTAGAATTACCGAAATACCCTTGTAGGTAAAATTACCAAATAC
CCCTGTAGGGTAG
Found at i:67809153 original size:45 final size:45
Alignment explanation
Indices: 67809080--67809341 Score: 325
Period size: 45 Copynumber: 5.9 Consensus size: 45
67809070 CGCACAGTAT
* *
67809080 TATTCGGGCCTTTGAGCCTAGCAGGCTGTAATGCCGGTGAGATAC
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
67809125 TATTTAGGCCTTTGAGCCTAGCAAGCTGTAATGCCGGTGAGATAC
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * * *
67809170 TATTCGGGTCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGAAAC
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
67809215 TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGATAC
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
67809260 TATTCAGGCTTTTGAGCCTAGCAGGCTATAATACCGGTGAAATGA-
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* * * *
67809305 TA-TC-GGGCTTCGAGCCTAGCAGGCGA-AATGTCGGTGA
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
67809342 ATGAATTTAG
Statistics
Matches: 191, Mismatches: 25, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
42 9 0.05
43 18 0.09
44 2 0.01
45 161 0.84
46 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (45 bp):
TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:67817810 original size:68 final size:67
Alignment explanation
Indices: 67817738--67817887 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
67817728 CATCATGTGT
* * * *
67817738 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
67817800 ATGTAG
62 ATGTAG
** * *
67817806 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
67817871 AG
66 AG
67817873 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
67817888 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:67817843 original size:64 final size:64
Alignment explanation
Indices: 67817762--67817945 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
67817752 AGACATTATG
* *
67817762 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
67817826 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
67817891 AA
63 AA
* * * *
67817893 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
67817946 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67822283 original size:64 final size:64
Alignment explanation
Indices: 67822205--67822388 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
67822195 AGAAATTATG
* * * * *
67822205 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGATAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
67822269 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAAGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTG---TACACCATGTAGACAAGAGAGCTACGAGAT
67822334 AA
63 AA
* *
67822336 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
67822389 CGAACTATAT
Statistics
Matches: 100, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 27 0.27
66 23 0.23
67 29 0.29
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67827026 original size:21 final size:21
Alignment explanation
Indices: 67826987--67827026 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
67826977 TACACAATCA
* * *
67826987 AAAGTCATATATTATCATATC
1 AAAGTCAAATATCAACATATC
67827008 AAAGTCAAATATCAACATA
1 AAAGTCAAATATCAACATA
67827027 AAGTCCCTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.05, T:0.30
Consensus pattern (21 bp):
AAAGTCAAATATCAACATATC
Found at i:67828419 original size:43 final size:42
Alignment explanation
Indices: 67828305--67828419 Score: 112
Period size: 43 Copynumber: 2.7 Consensus size: 42
67828295 TACAATGTCA
* *
67828305 ATGTCCCAGACATGGTCTTACACGT-AATCAAAAATATATGCC
1 ATGTCCCAGACGTGGTCTTACACGTAAATCAAAAAGATATG-C
* * *
67828347 ACTATCCCAAACAG-GGTCTTACACG-AAATCAAATACGATACTG-
1 A-TGTCCCAGAC-GTGGTCTTACACGTAAATCAAA-AAGATA-TGC
67828390 ATGTCCCAGACGTGGTCTTACACGTAAATC
1 ATGTCCCAGACGTGGTCTTACACGTAAATC
67828420 TCAAATCAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
41 1 0.02
42 20 0.34
43 32 0.54
44 4 0.07
45 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (42 bp):
ATGTCCCAGACGTGGTCTTACACGTAAATCAAAAAGATATGC
Found at i:67828843 original size:8 final size:8
Alignment explanation
Indices: 67828832--67828871 Score: 71
Period size: 8 Copynumber: 5.0 Consensus size: 8
67828822 ATTAGCCCTC
*
67828832 ACATTTTC
1 ACATTTTA
67828840 ACATTTTA
1 ACATTTTA
67828848 ACATTTTA
1 ACATTTTA
67828856 ACATTTTA
1 ACATTTTA
67828864 ACATTTTA
1 ACATTTTA
67828872 GCCCCTGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (8 bp):
ACATTTTA
Found at i:67831875 original size:7 final size:7
Alignment explanation
Indices: 67831863--67831887 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
67831853 AGAGAGCATT
67831863 GATATGA
1 GATATGA
67831870 GATATGA
1 GATATGA
67831877 GATATGA
1 GATATGA
67831884 GATA
1 GATA
67831888 AATATGGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (7 bp):
GATATGA
Found at i:67833983 original size:27 final size:27
Alignment explanation
Indices: 67833953--67834044 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
67833943 ATTACCAAAG
* *
67833953 TACCCTCGATTTATAGAATCACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
67833980 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
67834007 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
67834034 TACCCTCGATT
1 TACCCTCGATT
67834045 GTGAAATTAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:67834109 original size:27 final size:27
Alignment explanation
Indices: 67834076--67834198 Score: 140
Period size: 27 Copynumber: 4.6 Consensus size: 27
67834066 TATACGGTAG
67834076 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
67834103 AACTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
67834130 AATTACCAAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* **
67834157 AATTTCCAAAATACCCC-AGATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
*
67834184 AATTACAAAAATACC
1 AATTACCAAAATACC
67834199 TTTGACTTTT
Statistics
Matches: 78, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
26 1 0.01
27 77 0.99
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:67834250 original size:27 final size:26
Alignment explanation
Indices: 67834207--67834262 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
67834197 CCTTTGACTT
67834207 TTTAAAAATTATAGAAATACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
67834233 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
67834260 TTT
1 TTT
67834263 GTAGATTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 4 0.15
27 22 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:67835255 original size:24 final size:24
Alignment explanation
Indices: 67835173--67835255 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
67835163 AGGAAGTGCA
* *
67835173 AAAAGGGCTCTGCCTCAGTTTATT
1 AAAAGGGCTTTGCCCCAGTTTATT
* *
67835197 GAAAAGGGCTTTACCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATT
67835222 AGAAAGGGCTTTGCCCCAG-TTATT
1 A-AAAGGGCTTTGCCCCAGTTTATT
67835246 AAAAGAGGCT
1 AAAAG-GGCT
67835256 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.20
25 36 0.72
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATT
Found at i:67835449 original size:42 final size:42
Alignment explanation
Indices: 67835390--67835483 Score: 152
Period size: 42 Copynumber: 2.2 Consensus size: 42
67835380 TAGTCTCCCC
* ** *
67835390 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
67835432 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
67835474 AAATGGGCTT
1 AAATGGGCTT
67835484 ATGGGCCATA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:67837223 original size:44 final size:42
Alignment explanation
Indices: 67837173--67837329 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 42
67837163 TGTGTTTTCG
* *
67837173 TGTAAGACCACGTTTAGGACATTGGCATCGACTTATGATTTACA
1 TGTAAGACCACGTTTGGGATATTGGCATCGA-TT-TGATTTACA
* *
67837217 TGTAAGACCACGTTTGGGATGTTGGCATCGTATTTTATTT-CA
1 TGTAAGACCACGTTTGGGATATTGGCATCG-ATTTGATTTACA
*
67837259 TGTAAGACC-CTGTTTGGGATAGTGGCATCGATATTTG-TTTACA
1 TGTAAGACCAC-GTTTGGGATATTGGCATCG--ATTTGATTTACA
* * *
67837302 TGTAAGACCACGTCTGGAATTTTGGCAT
1 TGTAAGACCACGTTTGGGATATTGGCAT
67837330 TGTTTGAGGT
Statistics
Matches: 97, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
41 1 0.01
42 31 0.32
43 34 0.35
44 30 0.31
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.36
Consensus pattern (42 bp):
TGTAAGACCACGTTTGGGATATTGGCATCGATTTGATTTACA
Found at i:67837327 original size:85 final size:86
Alignment explanation
Indices: 67837168--67837329 Score: 213
Period size: 85 Copynumber: 1.9 Consensus size: 86
67837158 CGATATGTGT
* * *
67837168 TTTCGTGTAAGACCACGTTTAGGACATTGGCATCGACTTATGATTTACATGTAAGACCACGTTTG
1 TTTCATGTAAGACCACGTTTAGGACAGTGGCATCGACTTATGATTTACATGTAAGACCACGTCTG
*
67837233 GGATGTTGGCATCGTATTTTA
66 GAATGTTGGCATCGTATTTTA
* * *
67837254 TTTCATGTAAGACC-CTGTTTGGGATAGTGGCATCGA-TATTTG-TTTACATGTAAGACCACGTC
1 TTTCATGTAAGACCAC-GTTTAGGACAGTGGCATCGACT-TATGATTTACATGTAAGACCACGTC
*
67837316 TGGAATTTTGGCAT
64 TGGAATGTTGGCAT
67837330 TGTTTGAGGT
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 33 0.50
86 33 0.50
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.36
Consensus pattern (86 bp):
TTTCATGTAAGACCACGTTTAGGACAGTGGCATCGACTTATGATTTACATGTAAGACCACGTCTG
GAATGTTGGCATCGTATTTTA
Found at i:67838654 original size:16 final size:16
Alignment explanation
Indices: 67838633--67838664 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
67838623 ATTGTAACGC
*
67838633 CCCAAAAATCTCAAAA
1 CCCAAAAATCCCAAAA
67838649 CCCAAAAATCCCAAAA
1 CCCAAAAATCCCAAAA
67838665 TCTTGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.34, G:0.00, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCAAAA
Found at i:67840248 original size:29 final size:29
Alignment explanation
Indices: 67840213--67840310 Score: 126
Period size: 29 Copynumber: 3.4 Consensus size: 29
67840203 AATGTGACTA
*
67840213 GGCCTAATGGGCCATAAAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
67840242 GGCCTAATGGGCCATATATAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* * *
67840271 GGCCTAATAGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
67840299 GGCTTAATGGGC
1 GGCCTAATGGGC
67840311 GAGATACAGG
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
28 13 0.22
29 46 0.78
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.29
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:67845046 original size:43 final size:43
Alignment explanation
Indices: 67844893--67845047 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
67844883 TGTGTTATCT
*
67844893 TGTAAGACCACGTCTGGGACATTGGCATCGAT-TTGTGATTTACG
1 TGTAAGACCACATCTGGGACATTGGCATCGATATT-TGATTT-CG
* ** * *
67844937 GGTAAGACCATGTCTGGGACATT-GCATCG-TATATG-TTTTG
1 TGTAAGACCACATCTGGGACATTGGCATCGATATTTGATTTCG
* * *
67844977 TGTAAGACC-CTATCTAGGACAGTGGCATCGATATTTGATTTCA
1 TGTAAGACCAC-ATCTGGGACATTGGCATCGATATTTGATTTCG
* *
67845020 TGTAAGACCACATATGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACATTGGCAT
67845048 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
40 18 0.20
41 9 0.10
42 8 0.09
43 32 0.36
44 22 0.25
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGACATTGGCATCGATATTTGATTTCG
Found at i:67846935 original size:18 final size:20
Alignment explanation
Indices: 67846899--67846945 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
67846889 AGTTGTAAGT
67846899 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
67846919 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
67846938 ATGATATA
1 AT-ATATA
67846946 ACCTATTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:67847252 original size:18 final size:18
Alignment explanation
Indices: 67847229--67847269 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
67847219 ATGCATGACA
67847229 ACCAAGCATATGCACATC
1 ACCAAGCATATGCACATC
67847247 ACCAAGCATATGCACATC
1 ACCAAGCATATGCACATC
67847265 ACCAA
1 ACCAA
67847270 TATGTACAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.41, C:0.34, G:0.10, T:0.15
Consensus pattern (18 bp):
ACCAAGCATATGCACATC
Found at i:67849582 original size:38 final size:38
Alignment explanation
Indices: 67849533--67849664 Score: 176
Period size: 38 Copynumber: 3.4 Consensus size: 38
67849523 ATATCCGGAC
*
67849533 TAAGATCCGAAGGTATTTGTGCGAGTTATTAATTCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGTTATTAATTCGGGT
* * *
67849572 TAAGTCCGAAGGCCTTTGTGCGAGATACTAATTCGGGT
1 TAAGTCCGAAGGCATTTGTGCGAGTTATTAATTCGGGT
* *
67849610 TAAGTCCGAAGGCATTCGTGCGAGTT-TTAAAATCGGGT
1 TAAGTCCGAAGGCATTTGTGCGAGTTATT-AATTCGGGT
67849648 TAAGTCCCGAAGGCATT
1 TAAGT-CCGAAGGCATT
67849665 GAATGAGTTA
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
37 1 0.01
38 66 0.80
39 15 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (38 bp):
TAAGTCCGAAGGCATTTGTGCGAGTTATTAATTCGGGT
Found at i:67855224 original size:39 final size:40
Alignment explanation
Indices: 67855088--67855270 Score: 135
Period size: 40 Copynumber: 4.6 Consensus size: 40
67855078 TTGAATGCTG
* * *
67855088 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACT-AT
1 TCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGA-T-ACTAAT
** * * * *
67855127 ATCCGGACTAAGATCCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGATACTAAT
* *
67855168 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGATACTAAT
* ** *
67855208 T-CGGGTTAAGTTCCGAAGGCATCTCGTGC--GATTTTAAAA
1 TCCGGGTTAAGTTCCGAAGGCAT-TTGTGCGAGATACT-AAT
*
67855247 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTTCCGAAGGCATT
67855271 GAATGAGTTA
Statistics
Matches: 115, Mismatches: 22, Indels: 13
0.77 0.15 0.09
Matches are distributed among these distances:
38 4 0.03
39 23 0.20
40 77 0.67
41 11 0.10
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:67855258 original size:79 final size:81
Alignment explanation
Indices: 67855088--67855267 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 81
67855078 TTGAATGCTG
* * *
67855088 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
67855152 TGTGCGAGTTATTAAT
66 CGTGCGAGTTATTAAA
* ** *
67855168 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCGGGTTAAGTTCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATATCCGGACTAAGATCCGAAGGCAT
67855230 CTCGTGCGA-TT-TTAAAA
65 -TCGTGCGAGTTATT-AAA
67855247 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
67855268 ATTGAATGAG
Statistics
Matches: 87, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
78 2 0.02
79 44 0.51
80 32 0.37
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTATTAAA
Found at i:67858480 original size:25 final size:26
Alignment explanation
Indices: 67858452--67858508 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
67858442 TATAATCGGC
* * *
67858452 ACACAGA-CATGGGTAAATATGATCG
1 ACACAGAGCATCGATAAATATGATAG
67858477 ACACAGAGTCATCGATAAATATGATAG
1 ACACAGAG-CATCGATAAATATGATAG
67858504 ACACA
1 ACACA
67858509 TAGCCACTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 7 0.26
27 20 0.74
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (26 bp):
ACACAGAGCATCGATAAATATGATAG
Found at i:67858522 original size:27 final size:27
Alignment explanation
Indices: 67858463--67858528 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
67858453 CACAGACATG
* *
67858463 GGTAAATATGATCGACACAGAGTCATC
1 GGTAAATATGATAGACACAGAGCCATC
* *
67858490 GATAAATATGATAGACACATAGCCA-C
1 GGTAAATATGATAGACACAGAGCCATC
67858516 TGGTAAATATGAT
1 -GGTAAATATGAT
67858529 TTGCACAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
26 1 0.03
27 32 0.97
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (27 bp):
GGTAAATATGATAGACACAGAGCCATC
Found at i:67860652 original size:28 final size:28
Alignment explanation
Indices: 67860598--67860694 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
67860588 ATACTAAGTC
*
67860598 CGCACACTCAGTGCTATAT-ATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
67860624 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
67860652 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
67860681 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67860695 CAATCTCATG
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
26 18 0.29
27 3 0.05
28 23 0.37
29 19 0.30
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:67868477 original size:28 final size:28
Alignment explanation
Indices: 67868414--67868511 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
67868404 ATACTAAGTC
*
67868414 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
67868441 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
67868469 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
67868498 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67868512 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:67871811 original size:28 final size:28
Alignment explanation
Indices: 67871771--67871827 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
67871761 CATGTCGAGG
67871771 CCGATGCCATGTCCCAGAAATGGTCTTA
1 CCGATGCCATGTCCCAGAAATGGTCTTA
67871799 CCGATGCCATGTCCCAGAAATGGTCTTA
1 CCGATGCCATGTCCCAGAAATGGTCTTA
67871827 C
1 C
67871828 ACTGGCTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (28 bp):
CCGATGCCATGTCCCAGAAATGGTCTTA
Found at i:67871870 original size:48 final size:48
Alignment explanation
Indices: 67871799--67872025 Score: 257
Period size: 48 Copynumber: 4.7 Consensus size: 48
67871789 AATGGTCTTA
*
67871799 CCGATGCCATGTCCCAGAAATGGTCTTACACTGGCTCTCACAATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAATGTGG
* *
67871847 CCGATGCTATGTCCCA-ACCATGGTCTTACACTAGCGCACAT-ATCAA--T-G
1 CCGATGCCATGTCCCAGA-CATGGTCTTACACT-G-GCTC-TCA-CAATGTGG
* ** *
67871895 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAACATCG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAATGTGG
* * * *
67871943 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATTGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAATGTGG
* *
67871991 TCGATTCCATGTCCCAGACATGGTCTTACACTGGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC
67872026 ACACATCACC
Statistics
Matches: 151, Mismatches: 18, Indels: 20
0.80 0.10 0.11
Matches are distributed among these distances:
45 4 0.03
46 4 0.03
47 2 0.01
48 130 0.86
49 3 0.02
50 4 0.03
51 4 0.03
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAATGTGG
Found at i:67871965 original size:96 final size:96
Alignment explanation
Indices: 67871799--67872022 Score: 297
Period size: 96 Copynumber: 2.3 Consensus size: 96
67871789 AATGGTCTTA
* * ** * *
67871799 CCGATGCCATGTCCCAGAAATGGTCTTACACTGGCTCTCACAATGTGGCCGATGCTATGTCCCAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAACATCGCCGATGCCATGTCCCAA
*
67871864 CCATGGTCTTACACTAGCGCACATATCAAT-G
66 ACATGGTCTTACACTAGCGCACATAT-AATGG
*
67871895 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAACATCGCCGATGCCATGTTCCAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAACATCGCCGATGCCATGTCCCAA
* * * **
67871960 ACATGGTCTTACACTGGCTCTCATATTGTGG
66 ACATGGTCTTACACTAGCGCACATATAATGG
* *
67871991 TCGATTCCATGTCCCAGACATGGTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
67872023 GGCACACATC
Statistics
Matches: 112, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
95 1 0.01
96 111 0.99
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (96 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAACATCGCCGATGCCATGTCCCAA
ACATGGTCTTACACTAGCGCACATATAATGG
Found at i:67880091 original size:28 final size:28
Alignment explanation
Indices: 67880051--67880161 Score: 143
Period size: 28 Copynumber: 3.9 Consensus size: 28
67880041 CATGACTGTA
67880051 AATGTGATTTGGGCCTAAT-GGCCATATG
1 AATGTGA-TTGGGCCTAATAGGCCATATG
* * *
67880079 AATGTGATTTGGGCCTAATTGGCCACATA
1 AATGTGA-TTGGGCCTAATAGGCCATATG
67880108 AATGTGATTGGGCCTAATAGGCCATATG
1 AATGTGATTGGGCCTAATAGGCCATATG
* * *
67880136 AATGAGATTGGGCCTAGTGGGCCATA
1 AATGTGATTGGGCCTAATAGGCCATA
67880162 AACATGTATG
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
28 60 0.81
29 14 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATAGGCCATATG
Found at i:67880159 original size:56 final size:57
Alignment explanation
Indices: 67880049--67880159 Score: 172
Period size: 56 Copynumber: 2.0 Consensus size: 57
67880039 AGCATGACTG
* *
67880049 TAAATGTGATTTGGGCCTAATGGCCATATGAATGTGATTTGGGCCTAATTGGCCACA
1 TAAATGTGATTTGGGCCTAATGGCCATATGAATGAGATTTGGGCCTAATGGGCCACA
*
67880106 TAAATGTGA-TTGGGCCTAATAGGCCATATGAATGAGA-TTGGGCCTAGTGGGCCA
1 TAAATGTGATTTGGGCCTAAT-GGCCATATGAATGAGATTTGGGCCTAATGGGCCA
67880160 TAAACATGTA
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
56 26 0.52
57 24 0.48
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (57 bp):
TAAATGTGATTTGGGCCTAATGGCCATATGAATGAGATTTGGGCCTAATGGGCCACA
Found at i:67882247 original size:13 final size:13
Alignment explanation
Indices: 67882229--67882253 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67882219 TTAAATTAGT
67882229 TAATTAGTTTAAA
1 TAATTAGTTTAAA
67882242 TAATTAGTTTAA
1 TAATTAGTTTAA
67882254 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:67886566 original size:6 final size:6
Alignment explanation
Indices: 67886555--67886641 Score: 50
Period size: 6 Copynumber: 14.3 Consensus size: 6
67886545 AATCCCCCTA
* * * * * *
67886555 TTTTAT TTTTAT TCTTAT TATTAT TTATTCT TATTCT TATTAT ATTTTA-
1 TTTTAT TTTTAT TTTTAT TTTTAT TT-TTAT TTTTAT TTTTAT -TTTTAT
* * * * *
67886604 TTTTAT TCTTAT TTTTCT TTTGAT TTTGAT TTTCAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
67886642 GAATTTTCTT
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
5 5 0.08
6 52 0.80
7 8 0.12
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.72
Consensus pattern (6 bp):
TTTTAT
Found at i:67886582 original size:22 final size:21
Alignment explanation
Indices: 67886556--67886616 Score: 88
Period size: 22 Copynumber: 2.9 Consensus size: 21
67886546 ATCCCCCTAT
67886556 TTTATTTTTATTCTTATTATTA
1 TTTATTTTTATTCTTATTA-TA
*
67886578 TTTATTCTTATTCTTATTATA
1 TTTATTTTTATTCTTATTATA
67886599 TTT-TATTTTATTCTTATT
1 TTTAT-TTTTATTCTTATT
67886617 TTTCTTTTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 1 0.03
21 17 0.47
22 18 0.50
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTATTTTTATTCTTATTATA
Found at i:67886616 original size:16 final size:16
Alignment explanation
Indices: 67886553--67886630 Score: 70
Period size: 16 Copynumber: 4.7 Consensus size: 16
67886543 TGAATCCCCC
67886553 TATTTTATTTTTATTCT
1 TATTTTA-TTTTATTCT
67886570 TATTATTA-TTTATTCT
1 TATT-TTATTTTATTCT
*
67886586 TATTCTTATTATATT-T
1 TATT-TTATTTTATTCT
*
67886602 TATTTTATTCTTATTTT
1 TATTTTATT-TTATTCT
*
67886619 TCTTTTGATTTT
1 TATTTT-ATTTT
67886631 GATTTTCATT
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
15 5 0.10
16 24 0.46
17 17 0.33
18 6 0.12
ACGTcount: A:0.19, C:0.06, G:0.01, T:0.73
Consensus pattern (16 bp):
TATTTTATTTTATTCT
Found at i:67886624 original size:22 final size:21
Alignment explanation
Indices: 67886555--67886630 Score: 80
Period size: 22 Copynumber: 3.4 Consensus size: 21
67886545 AATCCCCCTA
*
67886555 TTTTATTTTTATTCTTATTATT
1 TTTTA-TTTTATTCTTATTTTT
* * *
67886577 ATTTATTCTTATTCTTATTATA
1 TTTTATT-TTATTCTTATTTTT
67886599 TTTTATTTTATTCTTATTTTT
1 TTTTATTTTATTCTTATTTTT
67886620 CTTTTGATTTT
1 -TTTT-ATTTT
67886631 GATTTTCATT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
21 14 0.30
22 27 0.59
23 5 0.11
ACGTcount: A:0.18, C:0.07, G:0.01, T:0.74
Consensus pattern (21 bp):
TTTTATTTTATTCTTATTTTT
Found at i:67889561 original size:13 final size:13
Alignment explanation
Indices: 67889543--67889567 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67889533 TTAAATTAGT
67889543 TAATTAGTTTAAA
1 TAATTAGTTTAAA
67889556 TAATTAGTTTAA
1 TAATTAGTTTAA
67889568 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:67894474 original size:60 final size:60
Alignment explanation
Indices: 67894400--67894625 Score: 281
Period size: 60 Copynumber: 3.8 Consensus size: 60
67894390 AGCACTATGG
* * * * * *
67894400 CCACAAAGGTTTTCCTTTCTAGAGAATTGCCATAAAGGCACCCTTTTCATGCAATACTCA
1 CCACAAAGGCTTTCCTTTCCAGAGATTTTCCATAAAGGCATCCTTTTCATTCAATACTCA
* * * *
67894460 CCACAAGGGCTTTCCTTTCCAGATATTTTCCACAAAGGCATCATTTTCATTCAATACTCA
1 CCACAAAGGCTTTCCTTTCCAGAGATTTTCCATAAAGGCATCCTTTTCATTCAATACTCA
* * * *
67894520 CCACAAAGGCTTTCCTTTCCAAAGATTTTCCATAAAGGCATCCTTTTGATTCAGTACTCG
1 CCACAAAGGCTTTCCTTTCCAGAGATTTTCCATAAAGGCATCCTTTTCATTCAATACTCA
* * * * *
67894580 CCAAAAAGGCTTTCCTTTCTATATATTTTCCACAAAGGCATCCTTT
1 CCACAAAGGCTTTCCTTTCCAGAGATTTTCCATAAAGGCATCCTTT
67894626 AAATACATTT
Statistics
Matches: 143, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 143 1.00
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (60 bp):
CCACAAAGGCTTTCCTTTCCAGAGATTTTCCATAAAGGCATCCTTTTCATTCAATACTCA
Found at i:67894613 original size:120 final size:120
Alignment explanation
Indices: 67894400--67894621 Score: 318
Period size: 120 Copynumber: 1.9 Consensus size: 120
67894390 AGCACTATGG
* * * *
67894400 CCACAAAGGTTTTCCTTTCTAGAGAATTGCCATAAAGGCACCCTTTTCATGCAATACTCACCACA
1 CCACAAAGGCTTTCCTTTCCAAAGAATTGCCATAAAGGCACCCTTTTCATGCAATACTCACCAAA
*
67894465 AGGGCTTTCCTTTCCAGATATTTTCCACAAAGGCATCATTTTCATTCAATACTCA
66 AAGGCTTTCCTTTCCAGATATTTTCCACAAAGGCATCATTTTCATTCAATACTCA
* * * * * * *
67894520 CCACAAAGGCTTTCCTTTCCAAAGATTTTCCATAAAGGCATCCTTTTGATTCAGTACTCGCCAAA
1 CCACAAAGGCTTTCCTTTCCAAAGAATTGCCATAAAGGCACCCTTTTCATGCAATACTCACCAAA
* *
67894585 AAGGCTTTCCTTTCTATATATTTTCCACAAAGGCATC
66 AAGGCTTTCCTTTCCAGATATTTTCCACAAAGGCATC
67894622 CTTTAAATAC
Statistics
Matches: 88, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
120 88 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (120 bp):
CCACAAAGGCTTTCCTTTCCAAAGAATTGCCATAAAGGCACCCTTTTCATGCAATACTCACCAAA
AAGGCTTTCCTTTCCAGATATTTTCCACAAAGGCATCATTTTCATTCAATACTCA
Found at i:67897957 original size:38 final size:38
Alignment explanation
Indices: 67897912--67898053 Score: 205
Period size: 38 Copynumber: 3.7 Consensus size: 38
67897902 GGCTTAAAGA
* * * *
67897912 CCCGCAGGCTAT-ATGCTGGAAATATATCCAGGTTAAAT
1 CCCGCAGGCT-TCGTGCTGGTATTATATCCGGGTTAAAT
67897950 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
*
67897988 CCCGCAGGCTTCGTGCTGGTATTATATCTGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
* *
67898026 CCCGCAGGCCTAGTGCTGGTATTATATC
1 CCCGCAGGCTTCGTGCTGGTATTATATC
67898054 TGAGCTTAAA
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
37 1 0.01
38 95 0.99
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
Found at i:67898054 original size:38 final size:38
Alignment explanation
Indices: 67897942--67898069 Score: 202
Period size: 38 Copynumber: 3.3 Consensus size: 38
67897932 AATATATCCA
*
67897942 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCTG
67897980 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCTG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCTG
* *
67898018 GGTTAAATCCCGCAGGCCTAGTGCTGGTATTATATCTG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCTG
*
67898056 AGCTTAAAGTCCCG
1 -GGTTAAA-TCCCG
67898070 TAGGTTATGT
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
38 73 0.87
39 6 0.07
40 5 0.06
ACGTcount: A:0.20, C:0.23, G:0.26, T:0.31
Consensus pattern (38 bp):
GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCTG
Found at i:67901576 original size:21 final size:21
Alignment explanation
Indices: 67901555--67901595 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
67901545 ATGATTCAAT
*
67901555 AAATTGAAAAATTATGAGAATA
1 AAATT-AAAAATTAAGAGAATA
*
67901577 AAATTAAAATTTAAGAGAA
1 AAATTAAAAATTAAGAGAA
67901596 AATTTGGTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (21 bp):
AAATTAAAAATTAAGAGAATA
Found at i:67902013 original size:23 final size:23
Alignment explanation
Indices: 67901973--67902025 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
67901963 GTTGGGGCTA
*
67901973 CTGGGCATGTACTGGCCAATCAG
1 CTGGGCATGTACTAGCCAATCAG
* * *
67901996 CTTGGCATGTGCTAGCCAATTAG
1 CTGGGCATGTACTAGCCAATCAG
67902019 CTGGGCA
1 CTGGGCA
67902026 ATGCTATTGC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (23 bp):
CTGGGCATGTACTAGCCAATCAG
Found at i:67902478 original size:29 final size:30
Alignment explanation
Indices: 67902421--67902478 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
67902411 CTTTTGAAAA
* * *
67902421 TATTTACAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCAACCAAATTTTAT
67902451 TATTTACAAAAAGA-GCAACCAAATTTTA
1 TATTTACAAAAAGAGGCAACCAAATTTTA
67902479 AAAATACTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACCAAATTTTAT
Found at i:67903523 original size:37 final size:37
Alignment explanation
Indices: 67903471--67903541 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
67903461 CCAAACCTTG
*
67903471 TGAATACGTGTTTCTGAAAAAAGTTCATAATAACTTT
1 TGAATACGTGCTTCTGAAAAAAGTTCATAATAACTTT
*
67903508 TGAATACGTGCTTCTGCAAAAAGTTCATAATAAC
1 TGAATACGTGCTTCTGAAAAAAGTTCATAATAAC
67903542 CCTAGCATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (37 bp):
TGAATACGTGCTTCTGAAAAAAGTTCATAATAACTTT
Found at i:67903685 original size:21 final size:21
Alignment explanation
Indices: 67903661--67903700 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
67903651 AAAACCCTTC
*
67903661 TTAAAATAAAAGAAACCTTAA
1 TTAAAATAAAAAAAACCTTAA
**
67903682 TTAACTTAAAAAAAACCTT
1 TTAAAATAAAAAAAACCTT
67903701 TCAGTTACGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.12, G:0.03, T:0.28
Consensus pattern (21 bp):
TTAAAATAAAAAAAACCTTAA
Found at i:67904773 original size:29 final size:29
Alignment explanation
Indices: 67904741--67904817 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 29
67904731 AATCATATTC
**
67904741 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCAAATGT
* *
67904770 ATATGGCCCATTCGGCCCAAATCAAATTT
1 ATATGGCCCATTAGGCCCAAATCAAATGT
*
67904799 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
67904818 GTCACATTCA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCAAATGT
Found at i:67906112 original size:17 final size:17
Alignment explanation
Indices: 67906090--67906129 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
67906080 ATAAAGAAAG
*
67906090 TTTAGGATTTC-AGGTTT
1 TTTAGG-TTTCGAGATTT
67906107 TTTAGGTTTCGAGATTT
1 TTTAGGTTTCGAGATTT
67906124 TTTAGG
1 TTTAGG
67906130 GCATTACAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.17, C:0.05, G:0.25, T:0.53
Consensus pattern (17 bp):
TTTAGGTTTCGAGATTT
Found at i:67909089 original size:29 final size:29
Alignment explanation
Indices: 67909057--67909133 Score: 127
Period size: 29 Copynumber: 2.7 Consensus size: 29
67909047 AATCATATTC
*
67909057 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
67909086 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
67909115 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
67909134 GTCACATTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:67909129 original size:58 final size:57
Alignment explanation
Indices: 67909023--67909133 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
67909013 AATTTCACAT
* * *
67909023 ACCTGTATTTGGCCTAGTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCAGTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
67909080 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCAGTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
67909134 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 20 0.43
58 26 0.57
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGGCCCAGTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:67909379 original size:16 final size:16
Alignment explanation
Indices: 67909354--67909384 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67909344 CCATAGCCAA
*
67909354 TATTTTAGCTTTTCGG
1 TATTTCAGCTTTTCGG
67909370 TATTTCAGCTTTTCG
1 TATTTCAGCTTTTCG
67909385 ACTTTTCGGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.16, G:0.16, T:0.55
Consensus pattern (16 bp):
TATTTCAGCTTTTCGG
Found at i:67915040 original size:47 final size:47
Alignment explanation
Indices: 67914986--67915132 Score: 204
Period size: 47 Copynumber: 3.1 Consensus size: 47
67914976 TTAGGATTGT
** * *
67914986 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
67915033 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
67915080 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
67915127 ATGTGA
1 ATGTGA
67915133 AATATGTATG
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 88 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:67915447 original size:37 final size:37
Alignment explanation
Indices: 67915342--67915447 Score: 167
Period size: 37 Copynumber: 2.9 Consensus size: 37
67915332 AATATATTCT
*
67915342 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* *
67915379 GGGTAAGACCCGATGACTACATGTGGAGATTTTGTTC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* *
67915416 GGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTT
67915448 CGTCTGAGCT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
Found at i:67921563 original size:16 final size:18
Alignment explanation
Indices: 67921533--67921568 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
67921523 GAATGAATTA
67921533 ATTATTAATCAAATTGAC
1 ATTATTAATCAAATTGAC
67921551 ATTA-TAATC-AATTGAC
1 ATTATTAATCAAATTGAC
67921567 AT
1 AT
67921569 AGTATTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
17 5 0.28
18 4 0.22
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (18 bp):
ATTATTAATCAAATTGAC
Found at i:67923225 original size:24 final size:24
Alignment explanation
Indices: 67923197--67923264 Score: 109
Period size: 24 Copynumber: 2.8 Consensus size: 24
67923187 AAAGGCTGTC
*
67923197 AGGAGAAGATTTAAGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
* *
67923221 GGGAGAGGATTTAGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTGATAA
67923245 AGGAGAAGATTTAGGAGCTG
1 AGGAGAAGATTTAGGAGCTG
67923265 GTCAAGAAGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.38, C:0.04, G:0.37, T:0.21
Consensus pattern (24 bp):
AGGAGAAGATTTAGGAGCTGATAA
Found at i:67924805 original size:21 final size:21
Alignment explanation
Indices: 67924760--67924808 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
67924750 ATTCCCCACA
67924760 TGGAGTGTAGGGCTGGTACGGG
1 TGGAGTGTAGGGCTGGTA-GGG
*
67924782 TGGAGTGTAGCGGTTGGT-GGG
1 TGGAGTGTAG-GGCTGGTAGGG
67924803 TGGAGT
1 TGGAGT
67924809 AGTCTCCCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 9 0.36
22 10 0.40
23 6 0.24
ACGTcount: A:0.12, C:0.06, G:0.55, T:0.27
Consensus pattern (21 bp):
TGGAGTGTAGGGCTGGTAGGG
Found at i:67931124 original size:24 final size:24
Alignment explanation
Indices: 67931091--67931164 Score: 112
Period size: 24 Copynumber: 3.0 Consensus size: 24
67931081 AAGGCTGTCA
*
67931091 GGAGAAGATTTAGGAGTTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
67931115 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
67931139 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
67931164 G
1 G
67931165 AGCAGGAGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 41 0.93
25 3 0.07
ACGTcount: A:0.36, C:0.04, G:0.38, T:0.22
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:67932709 original size:21 final size:21
Alignment explanation
Indices: 67932664--67932712 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
67932654 ATTCCACACA
67932664 TGGAGTGTAGGGCTGGTACGGG
1 TGGAGTGTAGGGCTGGTA-GGG
*
67932686 TGGAGTGTAGTGGTTGGT-GGG
1 TGGAGTGTAG-GGCTGGTAGGG
67932707 TGGAGT
1 TGGAGT
67932713 AGTCTCCCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 9 0.36
22 10 0.40
23 6 0.24
ACGTcount: A:0.12, C:0.04, G:0.55, T:0.29
Consensus pattern (21 bp):
TGGAGTGTAGGGCTGGTAGGG
Found at i:67936685 original size:81 final size:81
Alignment explanation
Indices: 67936550--67936798 Score: 279
Period size: 81 Copynumber: 3.1 Consensus size: 81
67936540 TTGGGCCATG
* * ** ***
67936550 AATGACCGAAAAACCCCTAGAATGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAA
1 AATGACCGAAATACCCCTATAGGGTAAAATGACTGAAATACCCTTGTAGGGTAAAATGACCGAAA
*
67936615 TACCCCTATATGGTAA
66 TACCCCTATAAGGTAA
* *
67936631 AATGACCGAAATACCCCTATAGGGTAAAATGATTGAAATACCCTTGTAGGGTAAAATGACCAAAA
1 AATGACCGAAATACCCCTATAGGGTAAAATGACTGAAATACCCTTGTAGGGTAAAATGACCGAAA
*
67936696 TACCCCTATAGGGTAA
66 TACCCCTATAAGGTAA
* * * * * * * *
67936712 AATAACTGTAATACCCATGTAGGGTAAAATGACT-ATAAT-GCCTCTGTAGGGTAAAATGACTGT
1 AATGACCGAAATACCCCTATAGGGTAAAATGACTGA-AATACCCT-TGTAGGGTAAAATGACCGA
67936775 AATA-CCCTAGTAAGGTAA
64 AATACCCCTA-TAAGGTAA
67936793 AATGAC
1 AATGAC
67936799 TAATTTTCCC
Statistics
Matches: 143, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
80 9 0.06
81 134 0.94
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.22
Consensus pattern (81 bp):
AATGACCGAAATACCCCTATAGGGTAAAATGACTGAAATACCCTTGTAGGGTAAAATGACCGAAA
TACCCCTATAAGGTAA
Found at i:67936799 original size:27 final size:28
Alignment explanation
Indices: 67936550--67936799 Score: 250
Period size: 27 Copynumber: 9.2 Consensus size: 28
67936540 TTGGGCCATG
* * **
67936550 AATGACCGAAAAACCCCTAG-AATGTAA
1 AATGACTGAAATACCCCTAGTAGGGTAA
*
67936577 AATGACTGAAATACCCCCA-TAGGGTAA
1 AATGACTGAAATACCCCTAGTAGGGTAA
* *
67936604 AATGACCGAAATACCCCTA-TATGGTAA
1 AATGACTGAAATACCCCTAGTAGGGTAA
*
67936631 AATGACCGAAATACCCCTA-TAGGGTAA
1 AATGACTGAAATACCCCTAGTAGGGTAA
* *
67936658 AATGATTGAAATA-CCCTTGTAGGGTAA
1 AATGACTGAAATACCCCTAGTAGGGTAA
**
67936685 AATGACCAAAATACCCCTA-TAGGGTAA
1 AATGACTGAAATACCCCTAGTAGGGTAA
* * *
67936712 AATAACTGTAATACCCAT-GTAGGGTAA
1 AATGACTGAAATACCCCTAGTAGGGTAA
* *
67936739 AATGACT-ATAATGCCTCT-GTAGGGTAA
1 AATGACTGA-AATACCCCTAGTAGGGTAA
* *
67936766 AATGACTGTAATA-CCCTAGTAAGGTAA
1 AATGACTGAAATACCCCTAGTAGGGTAA
67936793 AATGACT
1 AATGACT
67936800 AATTTTCCCT
Statistics
Matches: 186, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
26 7 0.04
27 175 0.94
28 4 0.02
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (28 bp):
AATGACTGAAATACCCCTAGTAGGGTAA
Found at i:67938191 original size:16 final size:16
Alignment explanation
Indices: 67938170--67938203 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
67938160 CAGACGGAGT
67938170 CTCAAGGTATTATGAA
1 CTCAAGGTATTATGAA
67938186 CTCAAGGTATTATGAA
1 CTCAAGGTATTATGAA
67938202 CT
1 CT
67938204 AAAGTACATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (16 bp):
CTCAAGGTATTATGAA
Found at i:67944087 original size:40 final size:40
Alignment explanation
Indices: 67944029--67944246 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
67944019 TGGATGATAA
* * *
67944029 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
67944069 CCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67944109 CCGGGCTAAGTCCCGAAGGAATTTGTGAGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67944149 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
67944189 CTGGGCTATGTCCCGAAGGCATTCGAGCGTG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
67944229 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67944247 TACTTGGCTT
Statistics
Matches: 157, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 16 0.10
40 141 0.90
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67946511 original size:16 final size:16
Alignment explanation
Indices: 67946490--67946521 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
67946480 CATGTAACGC
67946490 CCCAAAAATCCTGAAA
1 CCCAAAAATCCTGAAA
67946506 CCCAAAAATCCTGAAA
1 CCCAAAAATCCTGAAA
67946522 TCTTGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.12
Consensus pattern (16 bp):
CCCAAAAATCCTGAAA
Found at i:67947774 original size:25 final size:25
Alignment explanation
Indices: 67947746--67947798 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
67947736 ATGAATTGGC
*
67947746 AAAAGCCAAAATGCCGAAATGCTGA
1 AAAAGCCAAAAAGCCGAAATGCTGA
*
67947771 AAAAGCTAAAAAGCCGAAATGCTGA
1 AAAAGCCAAAAAGCCGAAATGCTGA
67947796 AAA
1 AAA
67947799 GCTGAAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.53, C:0.17, G:0.19, T:0.11
Consensus pattern (25 bp):
AAAAGCCAAAAAGCCGAAATGCTGA
Found at i:67947936 original size:19 final size:18
Alignment explanation
Indices: 67947912--67947948 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
67947902 AGATTTGGCC
*
67947912 AAATGGGCTGGAATGGGCT
1 AAATGGGCCGG-ATGGGCT
67947931 AAATGGGCCGGATGGGCT
1 AAATGGGCCGGATGGGCT
67947949 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.24, C:0.14, G:0.43, T:0.19
Consensus pattern (18 bp):
AAATGGGCCGGATGGGCT
Found at i:67948071 original size:29 final size:29
Alignment explanation
Indices: 67948029--67948141 Score: 113
Period size: 29 Copynumber: 3.9 Consensus size: 29
67948019 ATAATATTGT
* *
67948029 TTGGACCTAATGGGCCATATGAATGTAAA
1 TTGGGCCTAGTGGGCCATATGAATGTAAA
* * * *
67948058 TTTGGCCTAGTGGGCCATAAGAATATGAA
1 TTGGGCCTAGTGGGCCATATGAATGTAAA
* *
67948087 CTGGGCC-AGATGGGCCATATGAATG-AGA
1 TTGGGCCTAG-TGGGCCATATGAATGTAAA
* *
67948115 TTGGGCCTAGTCGGCCATATGCATGTA
1 TTGGGCCTAGTGGGCCATATGAATGTA
67948142 TGTAGGGGTA
Statistics
Matches: 66, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
28 22 0.33
29 44 0.67
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (29 bp):
TTGGGCCTAGTGGGCCATATGAATGTAAA
Found at i:67958401 original size:55 final size:56
Alignment explanation
Indices: 67958274--67958403 Score: 140
Period size: 55 Copynumber: 2.4 Consensus size: 56
67958264 TTGAGCTTAC
* * * *
67958274 CAAAACAACACGGGCGTGGGACACGCCTGTGTGGAAGAACCGTGGATGAACCTATT
1 CAAATCAACACGGGCGTGGGACACGCCCGTGTCGAACAACCGTGGATGAACCTATT
* * * * * *
67958330 AAAAT-AGCACGTGCGTGTGACACGCCCGTGTCTAACACCCGTGG-TCGAACCTA-T
1 CAAATCAACACGGGCGTGGGACACGCCCGTGTCGAACAACCGTGGAT-GAACCTATT
67958384 CAAATCAACACGGGCGTGGG
1 CAAATCAACACGGGCGTGGG
67958404 GCTTGCATAC
Statistics
Matches: 58, Mismatches: 14, Indels: 5
0.75 0.18 0.06
Matches are distributed among these distances:
54 6 0.10
55 49 0.84
56 3 0.05
ACGTcount: A:0.28, C:0.26, G:0.28, T:0.17
Consensus pattern (56 bp):
CAAATCAACACGGGCGTGGGACACGCCCGTGTCGAACAACCGTGGATGAACCTATT
Found at i:67963414 original size:29 final size:29
Alignment explanation
Indices: 67963372--67963475 Score: 133
Period size: 29 Copynumber: 3.6 Consensus size: 29
67963362 ATATGATTTA
* *
67963372 GGCCTAATGGGCCATATGAATGCGAATTG
1 GGCCTAGTGGGCCATATGAATGAGAATTG
* *
67963401 GGCCTAGTGGGCCATAAGAAT-ATGAACTG
1 GGCCTAGTGGGCCATATGAATGA-GAATTG
67963430 GGCC-AGTTGGGCCATATGAATGAG-ATTG
1 GGCCTAG-TGGGCCATATGAATGAGAATTG
67963458 GGCCTAGTGGGCCATATG
1 GGCCTAGTGGGCCATATG
67963476 CATGTATATA
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
28 20 0.31
29 44 0.68
30 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.34, T:0.23
Consensus pattern (29 bp):
GGCCTAGTGGGCCATATGAATGAGAATTG
Found at i:67965230 original size:13 final size:13
Alignment explanation
Indices: 67965212--67965239 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
67965202 TGACATGATT
67965212 AATTAAGCTTACA
1 AATTAAGCTTACA
67965225 AATTAAGCTTACA
1 AATTAAGCTTACA
67965238 AA
1 AA
67965240 CCATAGTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (13 bp):
AATTAAGCTTACA
Found at i:67966807 original size:40 final size:41
Alignment explanation
Indices: 67966750--67966933 Score: 232
Period size: 41 Copynumber: 4.5 Consensus size: 41
67966740 CACACAAGGT
* * * * * *
67966750 CTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGC
*
67966790 CTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGC
*
67966830 CTTC-GGATCTTAGTCCGGA-AGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATA-TAGTCGCTTAGCACAAAAGC
*
67966871 CTTCGGGACTTAGCCCGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGC
*
67966912 CTTCGGGACTTACCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
67966934 CATTCGAGTA
Statistics
Matches: 128, Mismatches: 11, Indels: 9
0.86 0.07 0.06
Matches are distributed among these distances:
39 4 0.03
40 56 0.44
41 65 0.51
42 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (41 bp):
CTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGC
Found at i:67975108 original size:27 final size:27
Alignment explanation
Indices: 67974407--67975107 Score: 913
Period size: 27 Copynumber: 26.0 Consensus size: 27
67974397 ACAAAATGAT
* *
67974407 TGAAATACCCCTG-AGGGTAGAACTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67974433 TGAAATAACCCTGTAGGGCAAAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67974460 TGAAATACCCCTATAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67974487 TTAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * * *
67974514 TAAAATACCCCTATAGGGTATAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67974541 TGAAATACCCCTGTAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67974568 TGAAATTCCCCTGTAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67974595 TGAAATACCCCTATAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67974622 TAAAATACCCCTGTAGGGTAGAATAAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * * *
67974649 TGAATTACCCTTGAAGGGTAGAAATAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67974676 CGAAATTCCCCTATAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67974703 TGAAATACCCTTGTAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67974730 TGAAATACCCTTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67974757 TGAAATACCCCTGTAGGGTAGAAATAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * * *
67974784 CGAAATACCCCTATAGGGTAAAAATAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67974811 CGAAATACCCCTGTAGGGTAGAAATA-
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67974837 TCGAAATACCCCTGTAGGATAGAATTAC
1 T-GAAATACCCCTGTAGGGTAGAATTAC
* * *
67974865 TGAAATACCCTTGCAGGATAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67974892 AGAAATACCCCTGTAGGGTATAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
67974919 TGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
**
67974946 TGAAATACCTATGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67974973 TGAAATACCCTTGCAGGATAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67975000 CGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
67975027 TGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
67975054 TGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67975081 CGAAATA-CCCTCGTGGGGTAAAATTAC
1 TGAAATACCCCT-GTAGGGTAGAATTAC
67975108 CCTTTTGCCC
Statistics
Matches: 592, Mismatches: 79, Indels: 7
0.87 0.12 0.01
Matches are distributed among these distances:
26 16 0.03
27 575 0.97
28 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
TGAAATACCCCTGTAGGGTAGAATTAC
Found at i:67975464 original size:22 final size:22
Alignment explanation
Indices: 67975436--67975494 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
67975426 CTCGTTATCG
67975436 ATGGCTTTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
67975458 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
67975480 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
67975495 ATGTATTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:67975732 original size:27 final size:26
Alignment explanation
Indices: 67975652--67975759 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 26
67975642 ATTCTGTTAA
* * *
67975652 GTGGCTTTGCCACATTATCTGTTTCCG
1 GTGGCTCTGCCACAATATCTG-TTCTG
*
67975679 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
67975706 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* ** *
67975733 GTGACTCTATCATAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
67975759 G
1 G
67975760 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 14 0.20
27 50 0.70
28 7 0.10
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:67978013 original size:27 final size:27
Alignment explanation
Indices: 67977985--67978918 Score: 1147
Period size: 27 Copynumber: 34.3 Consensus size: 27
67977975 ACAAAATGAT
* * ** *
67977985 TGAAACACCCTTGTAGGGTAGAGCTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
67978012 TGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67978039 CGAAATACCCCTATAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67978066 TGAAATACCCCTGTAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67978093 TGAAATACCCCTTTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
**
67978120 CAAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67978147 TGAAATTCCCCTGTAGAGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
67978174 TGAAATACCCCTGTAGGGTAGAATTA-
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67978200 TCAAAATACCCCTGTAGGGTAGAATTAT
1 T-GAAATACCCCTGTAGGGTAGAATTAC
* * *
67978228 TGAAATACCCCTATAGGGCAAAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67978255 TAAAATACCCCTGTAGGGTAGAATAAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67978282 T-AAATTACCCTTGTAGGGTAGAAATAC
1 TGAAA-TACCCCTGTAGGGTAGAATTAC
*
67978309 CGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67978336 TGAAATACCCTTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67978363 TAAAATACCCCTGTAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
67978390 TGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
** *
67978417 CAAAATACCCCTATAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67978444 TGATTATTGAAATACCCCTATAGGGTAGAATTAC
1 -------TGAAATACCCCTGTAGGGTAGAATTAC
* *
67978478 TAAAATACCCCTGTAGGGTAGAATAAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67978505 TGAATTACCCTTGTAGGGTA-AATATAC
1 TGAAATACCCCTGTAGGGTAGAAT-TAC
*
67978532 CGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67978559 TGAAATACCCTTATAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67978586 TGAAATACCCTTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67978613 TAAAATACCCTTGTAGGGTAGAAATAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67978640 CGAAATACCCCTGTAGGGTAGAAATAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67978667 CGAAATACCCCTATAGGGTAGAAATAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67978694 CGAAATACCCCTGTAGGATAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67978721 TGAAATACCCTTGCAGGATAGAATTA-
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67978747 TCGAAATACCCGTGTCGGGTAGAATTAC
1 T-GAAATACCCCTGTAGGGTAGAATTAC
* * * *
67978775 TAAAATACCCTTGCAGGATAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67978802 CGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67978829 CGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67978856 TGAAACACCCCTATAGGGTAGAATCAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67978883 TGAAATACCCCTATAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67978910 CGAAATACC
1 TGAAATACC
67978919 TTCGTGGGGT
Statistics
Matches: 793, Mismatches: 99, Indels: 30
0.86 0.11 0.03
Matches are distributed among these distances:
26 8 0.01
27 752 0.95
28 8 0.01
34 25 0.03
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
TGAAATACCCCTGTAGGGTAGAATTAC
Found at i:67979511 original size:27 final size:27
Alignment explanation
Indices: 67979481--67979564 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
67979471 ATTCTGTTAA
* *
67979481 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
67979508 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
67979535 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
67979562 GTG
1 GTG
67979565 ACTCAGTCAT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.16
27 36 0.71
28 7 0.14
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:67979578 original size:27 final size:26
Alignment explanation
Indices: 67979489--67979588 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 26
67979479 AAGTGGCTTT
* *
67979489 GCCACATTATCTGTTTCTGGTGGCT-A
1 GCCACAATATCTG-TTCTGGTGACTCA
* *
67979515 TGCCACAAATATCTGTTCTGGTGGCTCT
1 -GCCAC-AATATCTGTTCTGGTGACTCA
67979543 GCCACAATATCTGTATCTGGTGACTCA
1 GCCACAATATCTGT-TCTGGTGACTCA
* *
67979570 GTCATAATATCTGTTCTGG
1 GCCACAATATCTGTTCTGG
67979589 CAGCCATGCT
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
26 14 0.22
27 43 0.67
28 7 0.11
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
GCCACAATATCTGTTCTGGTGACTCA
Found at i:67979731 original size:18 final size:18
Alignment explanation
Indices: 67979710--67979749 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
67979700 ATTCACATTT
67979710 TGATTTTGATTCT-GATTC
1 TGATTTTGATTCTAG-TTC
67979728 TGATTTTGATTCTAGTTC
1 TGATTTTGATTCTAGTTC
67979746 TGAT
1 TGAT
67979750 AATGTTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.17, C:0.10, G:0.17, T:0.55
Consensus pattern (18 bp):
TGATTTTGATTCTAGTTC
Found at i:67982512 original size:27 final size:27
Alignment explanation
Indices: 67981801--67982500 Score: 882
Period size: 27 Copynumber: 25.9 Consensus size: 27
67981791 ACAAAATGAT
* *
67981801 TGAAATACCCCTGTAGGGTAGAACTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
67981828 TGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67981855 CGAAATACCCCTGTAGGTTAAAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67981882 TGAAATACCCCTGTAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67981909 TGAAATACCCCTTTAGGGTTGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
** * *
67981936 CAAAATACCCCTGTAGGGTATAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67981963 TGAAATTCCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
67981990 TGAAATACCCCTGTAGGGTAGAATTA-
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67982016 TCAAAATAACCCTGTAGGGTAGAATTA-
1 T-GAAATACCCCTGTAGGGTAGAATTAC
* * *
67982043 TCAAAATAACCCTGTAGGGTAGAATTAT
1 T-GAAATACCCCTGTAGGGTAGAATTAC
* * * *
67982071 TGTAATACCCCTATAGGGCAAAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67982098 TAAAATACCCCTGTAGGGTAGAATAAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67982125 TGAATTACCCTTGTAGGGTAGAAATAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
**
67982152 CAAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67982179 TGATATACCCTTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67982206 TAAAATACCCCTGTAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67982233 TGAAATACCCCTATAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
** * *
67982260 CAAAACACCCCCGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67982287 TGAAATTCCCCTGTAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67982314 TGAAATACCCCTATAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
67982341 TAAAATACCCCTATAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67982368 TAAAATACCCCTATAGGGTAGAATAAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67982395 TGAAATACCCTTGGAGGGTAGAAATAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67982422 CGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
67982449 CGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
67982476 TAAAATACCCCTATATGGTAGAATT
1 TGAAATACCCCTGTAGGGTAGAATT
67982501 TTTAAAATAC
Statistics
Matches: 581, Mismatches: 90, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 1 0.00
27 579 1.00
28 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
TGAAATACCCCTGTAGGGTAGAATTAC
Found at i:67983104 original size:27 final size:26
Alignment explanation
Indices: 67983074--67983181 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 26
67983064 ATTCTGGTAA
* *
67983074 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
67983101 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
* * *
67983128 GTGGCTCTGCCACAATATTTGTATCTA
1 GTGGCTATGCCACAATATCTGT-TCTG
* * * * *
67983155 GTGACTCTGTCACAAAATCTATTCTG
1 GTGGCTATGCCACAATATCTGTTCTG
67983181 G
1 G
67983182 CAGCCATGCT
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 12 0.18
27 49 0.72
28 7 0.10
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:67983132 original size:54 final size:53
Alignment explanation
Indices: 67983074--67983181 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 53
67983064 ATTCTGGTAA
* * * * * *
67983074 GTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAAA-ATCTATTCTG
* * *
67983128 GTGGCTCTGCCACAATATTTGTATCTAGTGACTCTGTCACAAAATCTATTCTG
1 GTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAAAATCTATTCTG
67983181 G
1 G
67983182 CAGCCATGCT
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 10 0.22
54 35 0.78
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAAAATCTATTCTG
Found at i:67984504 original size:13 final size:13
Alignment explanation
Indices: 67984483--67984517 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
67984473 ACAGGGACAC
*
67984483 GCCCGTGTGACGT
1 GCCCATGTGACGT
67984496 GCCCATGTGACGT
1 GCCCATGTGACGT
67984509 GCCCATGTG
1 GCCCATGTG
67984518 CGATCGCTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.11, C:0.31, G:0.34, T:0.23
Consensus pattern (13 bp):
GCCCATGTGACGT
Found at i:68001807 original size:46 final size:46
Alignment explanation
Indices: 68001757--68001932 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
68001747 TGGTTGAGCA
*
68001757 TCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
68001803 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
68001848 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68001896 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68001933 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Done.