Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 206 of 352
Found at i:68001913 original size:93 final size:93
Alignment explanation
Indices: 68001754--68001925 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
68001744 GGATGGTTGA
* *
68001754 GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
68001819 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
68001847 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68001912 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
68001926 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68004620 original size:45 final size:46
Alignment explanation
Indices: 68004556--68004730 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
68004546 TGTAACCCGC
*
68004556 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
68004601 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* *
68004651 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
68004694 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
68004731 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 36 0.32
46 29 0.26
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:68004721 original size:93 final size:92
Alignment explanation
Indices: 68004563--68004733 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
68004553 CGCCCATAAG
*
68004563 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68004628 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
68004655 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68004720 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
68004734 TCAACCATTC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 28 0.37
93 48 0.63
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:68010780 original size:62 final size:64
Alignment explanation
Indices: 68010657--68010780 Score: 234
Period size: 62 Copynumber: 2.0 Consensus size: 64
68010647 AAATAAATTG
68010657 CAAAGAAAAGATTATAGAATTAAATGTGGAAATGGTGAAACTCTGCGGGTTGAATCAGATAAAT
1 CAAAGAAAAGATTATAGAATTAAATGTGGAAATGGTGAAACTCTGCGGGTTGAATCAGATAAAT
68010721 CAAAGAAAAGATTATAGAATTAAATGT-GAAAT-GTGAAACTCTGCGGGTTGAATCAGATAA
1 CAAAGAAAAGATTATAGAATTAAATGTGGAAATGGTGAAACTCTGCGGGTTGAATCAGATAA
68010781 TCAGAGGCAT
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
62 28 0.47
63 5 0.08
64 27 0.45
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.25
Consensus pattern (64 bp):
CAAAGAAAAGATTATAGAATTAAATGTGGAAATGGTGAAACTCTGCGGGTTGAATCAGATAAAT
Found at i:68014519 original size:46 final size:46
Alignment explanation
Indices: 68014469--68014640 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
68014459 TGAGCATCCA
*
68014469 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
* * * *
68014515 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG--TCCG
* *
68014562 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
* * *
68014608 AGCTCGTTGAGTTTAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68014641 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 58 0.55
47 29 0.27
48 4 0.04
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
Found at i:68014626 original size:93 final size:93
Alignment explanation
Indices: 68014462--68014633 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
68014452 GGATGGTTGA
* * *
68014462 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68014527 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
68014555 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
68014620 TTAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
68014634 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68017786 original size:29 final size:28
Alignment explanation
Indices: 68017726--68017815 Score: 90
Period size: 29 Copynumber: 3.1 Consensus size: 28
68017716 GTGAGCATGA
* * * *
68017726 ATATAAAGCGATTTTGGCCTAACGGGCG
1 ATATAAAGTGATTTGGGCCTAATGGGCC
*
68017754 ATATAAAGGTGATTTGGGCCTAATAGGCC
1 ATATAAA-GTGATTTGGGCCTAATGGGCC
* * *
68017783 ATATGAATGTGAATTGGGCCTGATGGGCC
1 ATAT-AAAGTGATTTGGGCCTAATGGGCC
68017812 ATAT
1 ATAT
68017816 GAATGTGAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
28 7 0.14
29 42 0.82
30 2 0.04
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATAAAGTGATTTGGGCCTAATGGGCC
Found at i:68017816 original size:29 final size:29
Alignment explanation
Indices: 68017762--68017849 Score: 115
Period size: 29 Copynumber: 3.0 Consensus size: 29
68017752 CGATATAAAG
* * *
68017762 GTGATTTGGGCCTAATAGGCCATATGAAT
1 GTGAATTGGGCCTGATGGGCCATATGAAT
68017791 GTGAATTGGGCCTGATGGGCCATATGAAT
1 GTGAATTGGGCCTGATGGGCCATATGAAT
* *
68017820 GTGAATTCGACCTGATGGGTCC-TATGAAT
1 GTGAATTGGGCCTGATGGG-CCATATGAAT
68017849 G
1 G
68017850 AGATGGGCCA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
29 51 0.96
30 2 0.04
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.30
Consensus pattern (29 bp):
GTGAATTGGGCCTGATGGGCCATATGAAT
Found at i:68020448 original size:16 final size:17
Alignment explanation
Indices: 68020422--68020462 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
68020412 GAGTTGTAAC
68020422 TCCCTAAAAAT-CTCGAAA
1 TCCC-AAAAATCCT-GAAA
68020440 -CCCAAAAATCCTGAAA
1 TCCCAAAAATCCTGAAA
68020456 TCCCAAA
1 TCCCAAA
68020463 CTTTCTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.46, C:0.32, G:0.05, T:0.17
Consensus pattern (17 bp):
TCCCAAAAATCCTGAAA
Found at i:68020460 original size:17 final size:17
Alignment explanation
Indices: 68020422--68020462 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 17
68020412 GAGTTGTAAC
68020422 TCCCTAAAAATCTCGAAA
1 TCCC-AAAAATCTCGAAA
68020440 -CCCAAAAATC-CTGAAA
1 TCCCAAAAATCTC-GAAA
68020456 TCCCAAA
1 TCCCAAA
68020463 CTTTCTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 1 0.05
16 11 0.52
17 9 0.43
ACGTcount: A:0.46, C:0.32, G:0.05, T:0.17
Consensus pattern (17 bp):
TCCCAAAAATCTCGAAA
Found at i:68021770 original size:29 final size:29
Alignment explanation
Indices: 68021728--68021848 Score: 147
Period size: 29 Copynumber: 4.2 Consensus size: 29
68021718 GTGAGCATGA
* *
68021728 ATAT-AAGGTGATTTGGGCCTAACGGGCC
1 ATATGAAGGTGAATTGGGCCTAATGGGCC
* * *
68021756 ATATAAAGGTGATTTGGGCCTAATAGGCC
1 ATATGAAGGTGAATTGGGCCTAATGGGCC
**
68021785 ATATGAATATGAATTGGGCCTAATGGGCC
1 ATATGAAGGTGAATTGGGCCTAATGGGCC
* *
68021814 A-ATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAAGGTGAATTGGGCCTAATGGGCC
68021842 ATATGAA
1 ATATGAA
68021849 TGAGATGAGC
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 30 0.37
29 52 0.63
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (29 bp):
ATATGAAGGTGAATTGGGCCTAATGGGCC
Found at i:68021845 original size:57 final size:58
Alignment explanation
Indices: 68021740--68021849 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 58
68021730 ATAAGGTGAT
*
68021740 TTGGGCCTAACGGGCCATATAAAGGTGATTTGGGCCTAATAGGCCATATGAATATGAA
1 TTGGGCCTAACGGGCCATATAAAGGTGAATTGGGCCTAATAGGCCATATGAATATGAA
* * * * *
68021798 TTGGGCCTAATGGGCCA-ATGAATGTGAATTGGGCCTGATGGGCCATATGAAT
1 TTGGGCCTAACGGGCCATATAAAGGTGAATTGGGCCTAATAGGCCATATGAAT
68021850 GAGATGAGCC
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 30 0.65
58 16 0.35
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.26
Consensus pattern (58 bp):
TTGGGCCTAACGGGCCATATAAAGGTGAATTGGGCCTAATAGGCCATATGAATATGAA
Found at i:68030498 original size:21 final size:22
Alignment explanation
Indices: 68030449--68030499 Score: 88
Period size: 21 Copynumber: 2.4 Consensus size: 22
68030439 GCAAATAGAC
68030449 ACTTTTA-ACATATAGCATGCA
1 ACTTTTACACATATAGCATGCA
68030470 ACTTTTACA-ATATAGCATGCA
1 ACTTTTACACATATAGCATGCA
68030491 ACTTTTACA
1 ACTTTTACA
68030500 TTTTATGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (22 bp):
ACTTTTACACATATAGCATGCA
Found at i:68036340 original size:26 final size:27
Alignment explanation
Indices: 68036301--68036354 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
68036291 TACTCTTATG
*
68036301 TTAGCTTCCTGATGTGGGA-CCCTCCA
1 TTAGCTTCCCGATGTGGGATCCCTCCA
68036327 TTAGCTTCCCGATGTGGGATCCCTCCA
1 TTAGCTTCCCGATGTGGGATCCCTCCA
68036354 T
1 T
68036355 CACCAGAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.15, C:0.31, G:0.22, T:0.31
Consensus pattern (27 bp):
TTAGCTTCCCGATGTGGGATCCCTCCA
Found at i:68047731 original size:24 final size:25
Alignment explanation
Indices: 68047699--68047755 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
68047689 CAACTAGGAG
* *
68047699 GAGCTTACCG-TTTACAGCTCGTAA
1 GAGCATACCGATTCACAGCTCGTAA
* *
68047723 GAGCATACCGATTCAGAGCTCGTAT
1 GAGCATACCGATTCACAGCTCGTAA
68047748 GAGCATAC
1 GAGCATAC
68047756 ATGTACAGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (25 bp):
GAGCATACCGATTCACAGCTCGTAA
Found at i:68054256 original size:40 final size:40
Alignment explanation
Indices: 68054201--68054439 Score: 388
Period size: 40 Copynumber: 6.0 Consensus size: 40
68054191 GGATTTAGCT
* *
68054201 GGATATAACAACTCGCACAAATGCCTTCGGGTCCTAGCCC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
* *
68054241 GGATACAGCAACTCGCACAAATGCCTTCGAGTCTTAGCCC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
*
68054281 GGATATAGCAACACGCACAAATGCCTTCGGGTCTTAGCCC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
* * *
68054321 AGATACAGCAACTCGCACAAATGCCTTCGAGTCTTAGCCC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
*
68054361 GGATATAGCAACACGCACAAATGCCTTCGGGTCTTAGCCC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
*
68054401 AGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
68054440 TGGTTATCAT
Statistics
Matches: 182, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 182 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.21
Consensus pattern (40 bp):
GGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
Found at i:68062617 original size:40 final size:40
Alignment explanation
Indices: 68062437--68062613 Score: 259
Period size: 40 Copynumber: 4.5 Consensus size: 40
68062427 ACCCAAGTAT
*
68062437 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
68062476 CTTCGGGTCCTAGCCCGGATACAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
68062516 CTTCGGGTCTTTGCCCGGATATAGCAACACGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
68062556 CTTTGGGTCTTAGCCCGGTTATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
68062596 CTTCAGGTCTTAGCCCGG
1 CTTCGGGTCTTAGCCCGG
68062614 TTATCATCCG
Statistics
Matches: 123, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 10 0.08
40 112 0.91
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:68063049 original size:17 final size:17
Alignment explanation
Indices: 68063027--68063059 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
68063017 AAATTCAACA
68063027 TTTTAGCCAATATTCTC
1 TTTTAGCCAATATTCTC
*
68063044 TTTTAGCCAATTTTCT
1 TTTTAGCCAATATTCT
68063060 AAGTCAAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.06, T:0.52
Consensus pattern (17 bp):
TTTTAGCCAATATTCTC
Found at i:68064885 original size:18 final size:17
Alignment explanation
Indices: 68064852--68064899 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
68064842 GTGAATTGGC
*
68064852 CTAATGGGCCGGAATGGG
1 CTAATGGGCC-CAATGGG
68064870 CTAAATGGGCCCAATGGG
1 CT-AATGGGCCCAATGGG
*
68064888 CTATTGGGCCCA
1 CTAATGGGCCCA
68064900 TAATAGGTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 9 0.33
18 10 0.37
19 8 0.30
ACGTcount: A:0.23, C:0.23, G:0.35, T:0.19
Consensus pattern (17 bp):
CTAATGGGCCCAATGGG
Found at i:68064897 original size:17 final size:18
Alignment explanation
Indices: 68064854--68064899 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
68064844 GAATTGGCCT
*
68064854 AATGGGCCGGAATGGGCTA
1 AATGGGCC-CAATGGGCTA
68064873 AATGGGCCCAATGGGCT-
1 AATGGGCCCAATGGGCTA
*
68064890 ATTGGGCCCA
1 AATGGGCCCA
68064900 TAATAGGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 9 0.36
18 8 0.32
19 8 0.32
ACGTcount: A:0.24, C:0.22, G:0.37, T:0.17
Consensus pattern (18 bp):
AATGGGCCCAATGGGCTA
Found at i:68064990 original size:29 final size:29
Alignment explanation
Indices: 68064966--68065053 Score: 131
Period size: 29 Copynumber: 3.0 Consensus size: 29
68064956 GAATATAAAG
68064966 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGATTTGGGCCTAATGGGCCATATGAAT
* *
68064995 ATGATTTGGGCCTAATGGGCTATATGAAT
1 GTGATTTGGGCCTAATGGGCCATATGAAT
* * *
68065024 GTGAATTGGGCCTGATAGGCCATATGAAT
1 GTGATTTGGGCCTAATGGGCCATATGAAT
68065053 G
1 G
68065054 AGATGGGCCA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.12, G:0.31, T:0.31
Consensus pattern (29 bp):
GTGATTTGGGCCTAATGGGCCATATGAAT
Found at i:68072745 original size:29 final size:29
Alignment explanation
Indices: 68072713--68072830 Score: 116
Period size: 29 Copynumber: 4.1 Consensus size: 29
68072703 GTGAGCATGA
* *
68072713 ATATAAAGGTTATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
68072742 ATATGAATATGATTTGGGCCTAATAGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
68072771 ATGTAAATGTGAATTGGGCCTGATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
68072800 ATATGAATGAGA--TGGGCC-AAGTGGGCC
1 ATATAAATGTGATTTGGGCCTAA-TGGGCC
68072827 ATAT
1 ATAT
68072831 GTATGTATGT
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 16 0.22
29 56 0.77
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:68074697 original size:42 final size:42
Alignment explanation
Indices: 68074638--68074801 Score: 165
Period size: 42 Copynumber: 3.9 Consensus size: 42
68074628 TTAAGGTTGC
**
68074638 TGAGACTTTGTGTAAGACCATATCTAGGATATGGCATCAATA
1 TGAGACTTCATGTAAGACCATATCTAGGATATGGCATCAATA
**
68074680 TGAGACTTTGTGTAAGACCATATCTAGGATATGGCATCGGAATA
1 TGAGACTTCATGTAAGACCATATCTAGGATATGGCATC--AATA
* * * *
68074724 --AGACTTCATGTAAGAGCATAGT-TAGGCTATTAGCATCGATA
1 TGAGACTTCATGTAAGACCATA-TCTAGGATA-TGGCATCAATA
* *
68074765 CGAGA-TTACATGTAAGACCATATCTGGGATATGGCAT
1 TGAGACTT-CATGTAAGACCATATCTAGGATATGGCAT
68074802 TGGTATGATA
Statistics
Matches: 104, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
41 3 0.03
42 69 0.66
43 28 0.27
44 4 0.04
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (42 bp):
TGAGACTTCATGTAAGACCATATCTAGGATATGGCATCAATA
Found at i:68078285 original size:23 final size:23
Alignment explanation
Indices: 68078250--68078333 Score: 100
Period size: 23 Copynumber: 3.7 Consensus size: 23
68078240 GACTCACCAT
*
68078250 AGCTCATAAGAGCTTACTGTTTC
1 AGCTCATAAGAGCTTACTGATTC
**
68078273 AGCTCATTGGAGCTTACTGATTC
1 AGCTCATAAGAGCTTACTGATTC
*
68078296 AACTCGA-AAGAGCTTACT-ATTC
1 AGCTC-ATAAGAGCTTACTGATTC
*
68078318 AGCTCATTAGAGCTTA
1 AGCTCATAAGAGCTTA
68078334 TCGTTTTCAG
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
21 1 0.02
22 16 0.31
23 33 0.65
24 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (23 bp):
AGCTCATAAGAGCTTACTGATTC
Found at i:68082073 original size:37 final size:37
Alignment explanation
Indices: 68082023--68082101 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
68082013 TTATTACGAA
* *
68082023 GTCTTACCCGGACATAATCTCC-ACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATC-CCTACACGAAGTCATCGG
*
68082060 GTCTTACCCGGACAAAATCCCTACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCTACACGAAGTCATCGG
68082097 GTCTT
1 GTCTT
68082102 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 2 0.05
37 36 0.95
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCTACACGAAGTCATCGG
Found at i:68082307 original size:47 final size:47
Alignment explanation
Indices: 68082264--68082695 Score: 639
Period size: 47 Copynumber: 9.1 Consensus size: 47
68082254 TTGGCCACTC
* *
68082264 GGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* * *
68082311 GGCCTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* * *
68082358 GGCCTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
*
68082405 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* * * *
68082452 GGCCCTATCACACATATACATTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* * * *
68082499 GGCCCTATCACACATATACAATTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
*
68082546 GGCCATATCACACATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* **
68082593 GACCTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* *
68082640 GGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCAC--ACATATACACTTTCACATTCATCACATCGGCCATTA
68082689 GGCCTTA
1 GGCCTTA
68082696 CTATCATTTC
Statistics
Matches: 360, Mismatches: 23, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
47 319 0.89
49 41 0.11
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
Found at i:68085449 original size:14 final size:14
Alignment explanation
Indices: 68085422--68085481 Score: 75
Period size: 14 Copynumber: 4.3 Consensus size: 14
68085412 ACCTAAATTG
* *
68085422 ACCAATTCGCTCAT
1 ACCATTTCGTTCAT
**
68085436 ACCCCTTCGTTCAT
1 ACCATTTCGTTCAT
*
68085450 ACCATTTCATTCAT
1 ACCATTTCGTTCAT
68085464 ACCATTTCGTTCAT
1 ACCATTTCGTTCAT
68085478 ACCA
1 ACCA
68085482 CTCTTACCAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 39 1.00
ACGTcount: A:0.25, C:0.35, G:0.05, T:0.35
Consensus pattern (14 bp):
ACCATTTCGTTCAT
Found at i:68088067 original size:51 final size:50
Alignment explanation
Indices: 68087990--68088100 Score: 120
Period size: 51 Copynumber: 2.2 Consensus size: 50
68087980 AAATGAGAGA
* *
68087990 AAAAGCAAAAGAAAGCTGTAAAAAAAT-AAAAGAAGAGAAAAATAAGAAAAAG
1 AAAAGCAAAAGAAAGCTGAAAAAAAATCAAAA-AAG-G-AAAAGAAGAAAAAG
* *
68088042 AAAA-CAAAAGAGAG-TGAAAAGAAAATCAATAAAGGAAAAGAAGAAAAAG
1 AAAAGCAAAAGAAAGCTGAAAA-AAAATCAAAAAAGGAAAAGAAGAAAAAG
*
68088091 AAGAGCAAAA
1 AAAAGCAAAA
68088101 TTGAAAAAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
49 16 0.31
50 11 0.22
51 17 0.33
52 7 0.14
ACGTcount: A:0.70, C:0.05, G:0.19, T:0.06
Consensus pattern (50 bp):
AAAAGCAAAAGAAAGCTGAAAAAAAATCAAAAAAGGAAAAGAAGAAAAAG
Found at i:68092413 original size:14 final size:14
Alignment explanation
Indices: 68092389--68092436 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
68092379 ACCTAAACCG
*
68092389 ACCAATTCATTCAT
1 ACCACTTCATTCAT
*
68092403 ACCCCTTCATTCAT
1 ACCACTTCATTCAT
*
68092417 ACCATTTCATTCAT
1 ACCACTTCATTCAT
68092431 ACCACT
1 ACCACT
68092437 CTTACCATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (14 bp):
ACCACTTCATTCAT
Found at i:68097083 original size:40 final size:40
Alignment explanation
Indices: 68097013--68097226 Score: 233
Period size: 40 Copynumber: 5.4 Consensus size: 40
68097003 AAGCCAAGTA
* * * * *
68097013 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
68097052 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
68097092 CCTTCGGGACTTAGCCCAGA-ACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
68097132 CCTTCGGGACTTAGCCCGGATATGGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
68097172 CCTTC--GACTTAGCCCGGA-ACTAGTCAGTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
68097210 CCTTCGGGAATTAGCCC
1 CCTTCGGGACTTAGCCC
68097227 AGTTATCATC
Statistics
Matches: 150, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
37 1 0.01
38 30 0.20
39 13 0.09
40 105 0.70
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:68097147 original size:80 final size:78
Alignment explanation
Indices: 68097052--68097226 Score: 251
Period size: 78 Copynumber: 2.2 Consensus size: 78
68097042 CGCTCGAATA
* *
68097052 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAACTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTC--GACTTAGCCCAGAACTAG
*
68097117 TAACTCGCACAAATG
64 TAACTAGCACAAATG
* * *
68097132 CCTTCGGGACTTAGCCCGGATATGGTAACTCACACAAATGCCTTCGACTTAGCCCGGAACTAGTC
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGACTTAGCCCAGAACTAGTA
* *
68097197 AGTAGCGCAAATG
66 ACTAGCACAAATG
*
68097210 CCTTCGGGAATTAGCCC
1 CCTTCGGGACTTAGCCC
68097227 AGTTATCATC
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
78 44 0.51
80 42 0.49
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGACTTAGCCCAGAACTAGTA
ACTAGCACAAATG
Found at i:68173633 original size:43 final size:43
Alignment explanation
Indices: 68173572--68173725 Score: 254
Period size: 43 Copynumber: 3.6 Consensus size: 43
68173562 GCTGGTTTTA
**
68173572 TATTCGGGCCTTCGTGCCTAGCAGATTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
68173615 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
68173658 TATTCGGGCCTTCGTACCTAGTAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
68173701 TATTCGGGCCTTCGTGCCTAGCAGG
1 TATTCGGGCCTTCGTGCCTAGCAGG
68173726 TGTAATGCCG
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:68176465 original size:42 final size:42
Alignment explanation
Indices: 68176406--68176567 Score: 184
Period size: 42 Copynumber: 3.8 Consensus size: 42
68176396 TTAGGGTTAT
*
68176406 TGAGACTTTGTGTAAGACCATATCTGGGATATGGCATC-ACTA
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCGA-TA
* *
68176448 TGAGACTTCGTGTAAGACCATATCTAGGATATGGTATCGATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* * * * *
68176490 TAAGACTTTGTGTAAGACCATAGCTGGGCTATTGACATCGATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* * *
68176533 GGATA-TTACATGTAAGACCATATCTGGGATATGGC
1 TGAGACTT-CGTGTAAGACCATATCTGGGATATGGC
68176568 GTTGGTATTA
Statistics
Matches: 99, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 68 0.69
43 31 0.31
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:68188937 original size:30 final size:30
Alignment explanation
Indices: 68188903--68188963 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
68188893 TCCTTAACTC
68188903 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
68188933 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
68188963 A
1 A
68188964 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:68197563 original size:17 final size:16
Alignment explanation
Indices: 68197530--68197561 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
68197520 AAGTTCGGGA
68197530 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
*
68197546 TTTCGGGATTTTTGGG
1 TTTCGAGATTTTTGGG
68197562 GTGTTACATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:68198456 original size:25 final size:25
Alignment explanation
Indices: 68198427--68198494 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
68198417 GTTCTGACCC
* *
68198427 ACAGCTCGTGAGAGCCTACCGATTT
1 ACAGCTCATGAGAGCATACCGATTT
* *
68198452 ACAGCTCATGAGAGCATATCGATTC
1 ACAGCTCATGAGAGCATACCGATTT
*
68198477 ATAGCTCAT-ATGAGCATA
1 ACAGCTCATGA-GAGCATA
68198495 TATGTACAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (25 bp):
ACAGCTCATGAGAGCATACCGATTT
Found at i:68217215 original size:29 final size:32
Alignment explanation
Indices: 68217185--68217258 Score: 98
Period size: 35 Copynumber: 2.3 Consensus size: 32
68217175 ACTCTAACTC
68217185 AATTAT-G-GGAGATTAGTGATATGGATCTCA
1 AATTATAGAGGAGATTAGTGATATGGATCTCA
*
68217215 AATTATAGAAATTGAGATTAGTGATATGGATCTCA
1 AATTATAG--A-GGAGATTAGTGATATGGATCTCA
68217250 AATTATAGA
1 AATTATAGA
68217259 AATTGTATTA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
30 6 0.16
31 1 0.03
33 1 0.03
35 30 0.79
ACGTcount: A:0.39, C:0.05, G:0.22, T:0.34
Consensus pattern (32 bp):
AATTATAGAGGAGATTAGTGATATGGATCTCA
Found at i:68217239 original size:35 final size:35
Alignment explanation
Indices: 68217193--68217263 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
68217183 TCAATTATGG
68217193 GAGATTAGTGATATGGATCTCAAATTATAGAAATT
1 GAGATTAGTGATATGGATCTCAAATTATAGAAATT
68217228 GAGATTAGTGATATGGATCTCAAATTATAGAAATT
1 GAGATTAGTGATATGGATCTCAAATTATAGAAATT
68217263 G
1 G
68217264 TATTATGGCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.06, G:0.21, T:0.34
Consensus pattern (35 bp):
GAGATTAGTGATATGGATCTCAAATTATAGAAATT
Found at i:68218416 original size:22 final size:22
Alignment explanation
Indices: 68218390--68218454 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
68218380 TAAATATTTT
68218390 ATTTTATTCTTAATCTTTTTAA
1 ATTTTATTCTTAATCTTTTTAA
*
68218412 A---T-TT-TTAA-CTTTATT-T
1 ATTTTATTCTTAATCTTT-TTAA
*
68218428 ATTTAATTCTTAATCTTTTTAA
1 ATTTTATTCTTAATCTTTTTAA
68218450 ATTTT
1 ATTTT
68218455 TAACTTTACT
Statistics
Matches: 31, Mismatches: 4, Indels: 16
0.61 0.08 0.31
Matches are distributed among these distances:
16 5 0.16
17 6 0.19
18 2 0.06
19 1 0.03
20 2 0.06
21 6 0.19
22 9 0.29
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.65
Consensus pattern (22 bp):
ATTTTATTCTTAATCTTTTTAA
Found at i:68218431 original size:38 final size:38
Alignment explanation
Indices: 68218387--68218462 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
68218377 TAATAAATAT
*
68218387 TTTATTTTATTCTTAATCTTTTTAAATTTTTAACTTTA
1 TTTATTTAATTCTTAATCTTTTTAAATTTTTAACTTTA
68218425 TTTATTTAATTCTTAATCTTTTTAAATTTTTAACTTTA
1 TTTATTTAATTCTTAATCTTTTTAAATTTTTAACTTTA
68218463 CTTTTCTAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (38 bp):
TTTATTTAATTCTTAATCTTTTTAAATTTTTAACTTTA
Found at i:68218461 original size:16 final size:17
Alignment explanation
Indices: 68218399--68218461 Score: 58
Period size: 17 Copynumber: 3.5 Consensus size: 17
68218389 TATTTTATTC
68218399 TTAATCTTTTTAAATTT
1 TTAATCTTTTTAAATTT
*
68218416 TTAA-CTTTATTTATTTAATTC
1 TTAATC-TT-TTTA---AATTT
68218437 TTAATCTTTTTAAATTT
1 TTAATCTTTTTAAATTT
68218454 TTAA-CTTT
1 TTAATCTTT
68218462 ACTTTTCTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 13
0.72 0.04 0.25
Matches are distributed among these distances:
16 5 0.13
17 14 0.37
18 4 0.11
20 4 0.11
21 10 0.26
22 1 0.03
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (17 bp):
TTAATCTTTTTAAATTT
Found at i:68218473 original size:38 final size:38
Alignment explanation
Indices: 68218395--68218473 Score: 133
Period size: 38 Copynumber: 2.1 Consensus size: 38
68218385 ATTTTATTTT
*
68218395 ATTCTTAATCTTTTTAAATTTTTAACTTTATTTATTTA
1 ATTCTTAATCTTTTTAAATTTTTAACTTTATTTATCTA
68218433 ATTCTTAATCTTTTTAAATTTTTAACTTTACTTT-TCTA
1 ATTCTTAATCTTTTTAAATTTTTAACTTTA-TTTATCTA
68218471 ATT
1 ATT
68218474 TCACTTTCAC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 36 0.92
39 3 0.08
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (38 bp):
ATTCTTAATCTTTTTAAATTTTTAACTTTATTTATCTA
Found at i:68219016 original size:36 final size:36
Alignment explanation
Indices: 68218969--68219042 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
68218959 GGAATAGGGT
*
68218969 TATGGAGCATTACCAAACTTACAACACTTTTAAACA
1 TATGGAGCATTACCAAAATTACAACACTTTTAAACA
68219005 TATGGAGCATTACCAAAATTACAACACTTTTAAACA
1 TATGGAGCATTACCAAAATTACAACACTTTTAAACA
68219041 TA
1 TA
68219043 CATTCCATAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.28
Consensus pattern (36 bp):
TATGGAGCATTACCAAAATTACAACACTTTTAAACA
Found at i:68224359 original size:6 final size:6
Alignment explanation
Indices: 68224348--68224408 Score: 61
Period size: 6 Copynumber: 9.3 Consensus size: 6
68224338 TTTTTCACAA
68224348 TCTTTT TCTTTT TCTTCTT TCTCTTT TC-TTT TCTTTT TCTCATTT TCTTTT
1 TCTTTT TCTTTT TCTT-TT TCT-TTT TCTTTT TCTTTT TCT--TTT TCTTTT
68224399 ATCATTTT TC
1 -TC-TTTT TC
68224409 CTCTCCTTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 13
0.79 0.00 0.21
Matches are distributed among these distances:
5 5 0.10
6 19 0.40
7 13 0.27
8 11 0.23
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (6 bp):
TCTTTT
Found at i:68224379 original size:19 final size:19
Alignment explanation
Indices: 68224351--68224398 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
68224341 TTCACAATCT
68224351 TTTTCTTTTTCTTCTTTCTC-
1 TTTTC-TTTTCTT-TTTCTCA
68224371 TTTTCTTTTCTTTTTCTCA
1 TTTTCTTTTCTTTTTCTCA
68224390 TTTTCTTTT
1 TTTTCTTTT
68224399 ATCATTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.22
19 16 0.59
20 5 0.19
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTCTTTTCTTTTTCTCA
Found at i:68224403 original size:13 final size:12
Alignment explanation
Indices: 68224351--68224406 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 12
68224341 TTCACAATCT
*
68224351 TTTTCTTTTTCT
1 TTTTCTTTTTCA
68224363 TCTTTCTCTTTTC-
1 T-TTTCT-TTTTCA
68224376 TTTTCTTTTTCTCA
1 TTTTC-TTTT-TCA
68224390 TTTTCTTTTATCA
1 TTTTCTTTT-TCA
68224403 TTTT
1 TTTT
68224407 TCCTCTCCTT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
12 8 0.21
13 20 0.53
14 10 0.26
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTTCTTTTTCA
Found at i:68224408 original size:33 final size:33
Alignment explanation
Indices: 68224348--68224426 Score: 85
Period size: 33 Copynumber: 2.5 Consensus size: 33
68224338 TTTTTCACAA
* *
68224348 TCTTTTTCT--TTTTCTTCTTTCTCTTTTCTTT
1 TCTTTTTCTCATTTTCTTCTTTCTCTTTTCCTC
68224379 TCTTTTTCTCATTTTCTT-TTATCAT-TTTTCCTC
1 TCTTTTTCTCATTTTCTTCTT-TC-TCTTTTCCTC
*
68224412 TCCTTTTCTCATTTT
1 TCTTTTTCTCATTTT
68224427 TCTGTTCTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
31 9 0.22
32 2 0.05
33 29 0.71
34 1 0.02
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (33 bp):
TCTTTTTCTCATTTTCTTCTTTCTCTTTTCCTC
Found at i:68224436 original size:19 final size:20
Alignment explanation
Indices: 68224392--68224437 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
68224382 TTTTCTCATT
68224392 TTCTTTTATCATTTTTCCTC
1 TTCTTTTATCATTTTTCCTC
* * *
68224412 TCCTTTTCTCATTTTT-CTG
1 TTCTTTTATCATTTTTCCTC
68224431 TTCTTTT
1 TTCTTTT
68224438 TTATTTTCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.07, C:0.24, G:0.02, T:0.67
Consensus pattern (20 bp):
TTCTTTTATCATTTTTCCTC
Found at i:68226281 original size:27 final size:27
Alignment explanation
Indices: 68226250--68226626 Score: 432
Period size: 27 Copynumber: 14.0 Consensus size: 27
68226240 TAGAATACTT
**
68226250 TAGTTTACCAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
68226277 TAGTTTGTAAAATTACTAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
* *
68226304 TGGTTTATAAAATCACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* *
68226331 TAGTTTGTAAAATTACCAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
* * ** *
68226358 TGGTTTACAAAATTACTTAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
*
68226385 TAGTTTATAAAATCACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
68226412 TGGTTTATAAAATCACCAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
* *
68226439 TGGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * * **
68226466 TGGTTTGTAAAATTACTAAAATACCAT
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
68226493 TGGTTTATAAAATCACCAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
*
68226520 TTGTTTATAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* *
68226547 TAGTTTGTAAAATTATCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* *
68226574 -AGGTTTGTAAAATTATCAAAATACCCC
1 TA-GTTTATAAAATTACCAAAATACCCC
*
68226601 TAGTTTGTAAAATTACCAAAATACCC
1 TAGTTTATAAAATTACCAAAATACCC
68226627 TTGATTTGTG
Statistics
Matches: 304, Mismatches: 44, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 302 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
TAGTTTATAAAATTACCAAAATACCCC
Found at i:68226634 original size:27 final size:27
Alignment explanation
Indices: 68226259--68226706 Score: 377
Period size: 27 Copynumber: 16.6 Consensus size: 27
68226249 TTAGTTTACC
*
68226259 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* * *
68226286 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
68226313 AAATCACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* **
68226340 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
** *
68226367 AAATTACTTAAATACCCTT-AGTTTATA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* * * *
68226394 AAATCACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
68226421 AAATCACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
68226448 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * * *
68226475 AAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
68226502 AAATCACCAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TTGATTTGTA
*
68226529 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* ** *
68226556 AAATTATCAAAATACCCCAGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
68226583 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
*
68226610 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCTTGATTTGTA
*** * **
68226637 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*** ** *
68226664 AAATTATTGAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*
68226691 AAATTACCAAAGTACC
1 AAATTACCAAAATACC
68226707 TCTGAATTAT
Statistics
Matches: 352, Mismatches: 58, Indels: 22
0.81 0.13 0.05
Matches are distributed among these distances:
26 1 0.00
27 347 0.99
28 4 0.01
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTGTA
Found at i:68226653 original size:54 final size:54
Alignment explanation
Indices: 68226259--68226629 Score: 508
Period size: 54 Copynumber: 6.9 Consensus size: 54
68226249 TTAGTTTACC
*
68226259 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
68226313 AAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
** * * * *
68226367 AAATTACTTAAATACCCTTAGTTTATAAAATCACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * *
68226421 AAATCACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* ** * * * *
68226475 AAATTACTAAAATACCATTGGTTTATAAAATCACCAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* ** *
68226529 AAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCAGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
68226583 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
68226630 ATTTGTGAAA
Statistics
Matches: 276, Mismatches: 41, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 276 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:68226677 original size:81 final size:81
Alignment explanation
Indices: 68226259--68226761 Score: 370
Period size: 81 Copynumber: 6.2 Consensus size: 81
68226249 TTAGTTTACC
* * * * * * **
68226259 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATTAAA
*
68226324 ATACCC-CTAGTTTGTA
66 ATACCCTC-GGTTTGTA
* * * ** ** * * * **
68226340 AAATTACCAAAATACCCTTGGTTTACAAAATTACTTAAATA-CCCTTAGTTTATAAAATCACCAA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGA-TTTGTAAAATTATTAA
*
68226404 AATACCC-CTGGTTTATA
65 AATACCCTC-GGTTTGTA
* * * * * *
68226421 AAATCACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATTAAA
* * *
68226486 ATACCATTGGTTTATA
66 ATACCCTCGGTTTGTA
* * * * * *
68226502 AAATCACCAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCAA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGA-TTTGTAAAATTATTAA
68226566 AATACCC-CAGGTTTGTA
65 AATACCCTC-GGTTTGTA
* * *
68226583 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTGAAATTATTGAA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATTAAA
***
68226648 ATACCCTCGACCTGTA
66 ATACCCTCGGTTTGTA
** ** * * * * * * *
68226664 AAATTATTGAAATA-CCCTCAACTTGTAAAATTACCAAAGTACCTCTGAATTATAGAATTATCAT
1 AAATTATCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATTAA
** * **
68226728 TTTACCCTCGATTTACA
65 AATACCCTCGGTTTGTA
*
68226745 AAATTATCGAAATACCC
1 AAATTATCAAAATACCC
68226762 TTGTAAGGTA
Statistics
Matches: 350, Mismatches: 63, Indels: 17
0.81 0.15 0.04
Matches are distributed among these distances:
80 7 0.02
81 335 0.96
82 8 0.02
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (81 bp):
AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATTAAA
ATACCCTCGGTTTGTA
Found at i:68226760 original size:27 final size:27
Alignment explanation
Indices: 68226259--68226762 Score: 260
Period size: 27 Copynumber: 18.7 Consensus size: 27
68226249 TTAGTTTACC
* *
68226259 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTATCAAAATACCCTCGA-TTTGTA
* * *
68226286 AAATTA-CTAAAATACCCTTGGTTTATA
1 AAATTATC-AAAATACCCTCGATTTGTA
* * *
68226313 AAATCACCAAAATACCC-CTAGTTTGTA
1 AAATTATCAAAATACCCTCGA-TTTGTA
* * * **
68226340 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTATCAAAATACCCTCGATTTGTA
* * *
68226367 AAATTA-CTTAAATACCCT-TAGTTTATA
1 AAATTATC-AAAATACCCTCGA-TTTGTA
* * * *
68226394 AAATCACCAAAATACCC-CTGGTTTATA
1 AAATTATCAAAATACCCTC-GATTTGTA
* * * *
68226421 AAATCACCAAAATACCCTTGGTTTGTA
1 AAATTATCAAAATACCCTCGATTTGTA
* *
68226448 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTATCAAAATACCCTC-GATTTGTA
* * * *
68226475 AAATTA-CTAAAATACCATTGGTTTATA
1 AAATTATC-AAAATACCCTCGATTTGTA
* * * *
68226502 AAATCACCAAAATACCCTTTG-TTTATA
1 AAATTATCAAAATACCC-TCGATTTGTA
* *
68226529 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTATCAAAATACCCTCGA-TTTGTA
*
68226556 AAATTATCAAAATACCC-CAGGTTTGTA
1 AAATTATCAAAATACCCTC-GATTTGTA
*
68226583 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTATCAAAATACCCTCGA-TTTGTA
* * *
68226610 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTATCAAAATACCCTCGATTTGTA
** **
68226637 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTATCAAAATACCCTCGATTTGTA
** * *
68226664 AAATTATTGAAATACCCTCAACTTGTA
1 AAATTATCAAAATACCCTCGATTTGTA
* * * *
68226691 AAATTACCAAAGTA-CCTCTGAATTATA
1 AAATTATCAAAATACCCTC-GATTTGTA
* *** **
68226718 GAATTATCATTTTACCCTCGATTTACA
1 AAATTATCAAAATACCCTCGATTTGTA
*
68226745 AAATTATCGAAATACCCT
1 AAATTATCAAAATACCCT
68226763 TGTAAGGTAG
Statistics
Matches: 381, Mismatches: 73, Indels: 46
0.76 0.15 0.09
Matches are distributed among these distances:
26 7 0.02
27 363 0.95
28 11 0.03
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTATCAAAATACCCTCGATTTGTA
Found at i:68226839 original size:81 final size:81
Alignment explanation
Indices: 68226744--68226915 Score: 188
Period size: 81 Copynumber: 2.1 Consensus size: 81
68226734 CTCGATTTAC
* * * * *
68226744 AAAATTATCGAAATACCCTTGTAAGGTAGAAATA-TCAAAATAACCTTGTAAGG-TAGAAATACC
1 AAAATTACCAAAATACCCCTGTAAGGTAGAAATACT-AAAATAACCCTAT-AGGATAGAAATACC
68226807 GAAATACCCCTGTAGGGT
64 GAAATACCCCTGTAGGGT
* * * *
68226825 AGAAA-TACCAAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGATAGAATTACCG
1 A-AAATTACCAAAATACCCCTGTAAGGTAGAAATACTAAAATAACCCTATAGGATAGAAATACCG
* * *
68226889 AGATACCCTTGTGGGGT
65 AAATACCCCTGTAGGGT
68226906 AAAATTACCA
1 AAAATTACCA
68226916 TTTTACCCTT
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
80 6 0.08
81 65 0.87
82 4 0.05
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTGTAAGGTAGAAATACTAAAATAACCCTATAGGATAGAAATACCGA
AATACCCCTGTAGGGT
Found at i:68226876 original size:27 final size:27
Alignment explanation
Indices: 68226754--68226915 Score: 162
Period size: 27 Copynumber: 6.0 Consensus size: 27
68226744 AAAATTATCG
* * * *
68226754 AAATACCCTTGTAAGGTAGAAATATCA
1 AAATACCCCTGTAGGGTAGAATTACCA
* * * * *
68226781 AAATAACCTTGTAAGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCA
*
68226808 AAATACCCCTGTAGGGTAGAAATACCA
1 AAATACCCCTGTAGGGTAGAATTACCA
*
68226835 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCA
* * *
68226862 AAATACCCCTATAGGATAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCA
* * * *
68226889 AGATACCCTTGTGGGGTAAAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCA
68226916 TTTTACCCTT
Statistics
Matches: 115, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCA
Found at i:68227280 original size:102 final size:102
Alignment explanation
Indices: 68227147--68227338 Score: 305
Period size: 102 Copynumber: 1.9 Consensus size: 102
68227137 CTCGCTGCAA
* * *
68227147 TCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCGTCATAATATCTGGAAGCCTCGGTGC
1 TCTGGTGGCCTAGCCACATATATCTATTCTGGTGACTTCGTCACAATATCTGGAAGCCTCGCTGC
* *
68227212 AATCTGGTGGCTTCGGCACATATATATATATATCTGT
66 AATCTGGTGGCCTCGCCACATATATATATATATCTGT
* *
68227249 TCTGGTGGCCTAGCCACA-ATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTG
1 TCTGGTGGCCTAGCCACATATATCTAT-TCTGGTGACTTCGTCACAATATCTGGAAGCCTCGCTG
68227313 CAATCTGGTGGCCTCGCCACATATAT
65 CAATCTGGTGGCCTCGCCACATATAT
68227339 CTATTCTGGT
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 7 0.09
102 75 0.91
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.32
Consensus pattern (102 bp):
TCTGGTGGCCTAGCCACATATATCTATTCTGGTGACTTCGTCACAATATCTGGAAGCCTCGCTGC
AATCTGGTGGCCTCGCCACATATATATATATATCTGT
Found at i:68227293 original size:27 final size:26
Alignment explanation
Indices: 68227241--68227300 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
68227231 ATATATATAT
*
68227241 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
68227267 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
68227294 ATATCTG
1 ATATCTG
68227301 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:68227332 original size:67 final size:68
Alignment explanation
Indices: 68227249--68227414 Score: 246
Period size: 67 Copynumber: 2.5 Consensus size: 68
68227239 ATATATCTGT
* * *
68227249 TCTGGTGGCCTAGCCACA-ATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTG
1 TCTGGTGGCCTCGCCACATATATCTATATCTGGTGACTTCGTCACAATATCTGGAAGCCTCGCTG
68227313 CAA
66 CAA
* *
68227316 TCTGGTGGCCTCGCCACATATATCTAT-TCTGGTGACTTCGTCATAATATCTGGAAGCCTCGGTG
1 TCTGGTGGCCTCGCCACATATATCTATATCTGGTGACTTCGTCACAATATCTGGAAGCCTCGCTG
68227380 CAA
66 CAA
* * *
68227383 TCTGGTGGCTTCGGCACATATATATATATCTG
1 TCTGGTGGCCTCGCCACATATATCTATATCTG
68227415 TTCTGGTGGC
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
67 78 0.88
68 11 0.12
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.31
Consensus pattern (68 bp):
TCTGGTGGCCTCGCCACATATATCTATATCTGGTGACTTCGTCACAATATCTGGAAGCCTCGCTG
CAA
Found at i:68227407 original size:169 final size:167
Alignment explanation
Indices: 68227128--68227482 Score: 692
Period size: 169 Copynumber: 2.1 Consensus size: 167
68227118 GAGGAAGTGT
68227128 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCGTCATAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCGTCATAA
68227193 TATCTGGAAGCCTCGGTGCAATCTGGTGGCTTCGGCACATATATATATATATCTGTTCTGGTGGC
66 TATCTGGAAGCCTCGGTGCAATCTGGTGGCTTCGGCAC--ATATATATATATCTGTTCTGGTGGC
68227258 CTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATA
129 CTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATA
68227297 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCGTCATAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCGTCATAA
68227362 TATCTGGAAGCCTCGGTGCAATCTGGTGGCTTCGGCACATATATATATATCTGTTCTGGTGGCCT
66 TATCTGGAAGCCTCGGTGCAATCTGGTGGCTTCGGCACATATATATATATCTGTTCTGGTGGCCT
68227427 AGCCACAATATCTGTATCTGGTGACTTCGTCACAATA
131 AGCCACAATATCTGTATCTGGTGACTTCGTCACAATA
68227464 TCTGGCAGCCTCGCTGCAA
1 TCTGGCAGCCTCGCTGCAA
68227483 ATTCTGTGGT
Statistics
Matches: 186, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
167 83 0.45
169 103 0.55
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (167 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCGTCATAA
TATCTGGAAGCCTCGGTGCAATCTGGTGGCTTCGGCACATATATATATATCTGTTCTGGTGGCCT
AGCCACAATATCTGTATCTGGTGACTTCGTCACAATA
Found at i:68227460 original size:27 final size:26
Alignment explanation
Indices: 68227408--68227467 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
68227398 ACATATATAT
*
68227408 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
68227434 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
68227461 ATATCTG
1 ATATCTG
68227468 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:68227595 original size:6 final size:6
Alignment explanation
Indices: 68227586--68227735 Score: 103
Period size: 6 Copynumber: 24.3 Consensus size: 6
68227576 TTGCATTCAC
* * * *
68227586 ATTCTG ATTCTG ATTTTG -TTACCTG ATACTG ATTCTG ATTATG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
68227636 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
68227685 ATTTTG ATTCTG -TCACCTG ATTTTG ATTCTG ATTCTG ATTCT- AGTTCTG
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
68227734 AT
1 AT
68227736 AATGTTTCTT
Statistics
Matches: 114, Mismatches: 16, Indels: 28
0.72 0.10 0.18
Matches are distributed among these distances:
5 8 0.07
6 91 0.80
7 10 0.09
8 5 0.04
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:68227676 original size:25 final size:25
Alignment explanation
Indices: 68227589--68227678 Score: 144
Period size: 25 Copynumber: 3.6 Consensus size: 25
68227579 CATTCACATT
*
68227589 CTGATTCTGATTTTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
* * *
68227614 CTGATTCTGATTATGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTGATA
68227639 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
68227664 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
68227679 ATTTTGATTT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:68227694 original size:43 final size:43
Alignment explanation
Indices: 68227640--68227724 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
68227630 TACCTAATTC
*
68227640 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGATTT
1 TGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTGATTT
* **
68227683 TGATTTTGATTCTGTCACCTGATTTTGATTCTGATTCTGATT
1 TGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTGATT
68227725 CTAGTTCTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.18, C:0.15, G:0.16, T:0.51
Consensus pattern (43 bp):
TGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTGATTT
Found at i:68232048 original size:42 final size:41
Alignment explanation
Indices: 68232002--68232143 Score: 136
Period size: 40 Copynumber: 3.5 Consensus size: 41
68231992 GATATCTCAT
* *
68232002 ACACTAAGTGCCAATACATAGTCAAAGCTATTATAATCTCGC
1 ACACTAAGTGCCAATACATAGTCGAAGCTATTCTAAT-TCGC
* *
68232044 ACACTAAGTGTC-ATATATAG-CTGAAGCTATTCTAAATT-GC
1 ACACTAAGTGCCAATACATAGTC-GAAGCTATTCT-AATTCGC
*
68232084 ACACTAAGTGCCACAT--ATAGTCGAAGCTATCTCGAA-TCGC
1 ACACTAAGTGCCA-ATACATAGTCGAAGCTAT-TCTAATTCGC
*
68232124 ACACTAAGT-CCCATACATAG
1 ACACTAAGTGCCAATACATAG
68232144 AAGAATTGTC
Statistics
Matches: 84, Mismatches: 7, Indels: 20
0.76 0.06 0.18
Matches are distributed among these distances:
38 2 0.02
39 3 0.04
40 43 0.51
41 20 0.24
42 16 0.19
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (41 bp):
ACACTAAGTGCCAATACATAGTCGAAGCTATTCTAATTCGC
Found at i:68237107 original size:47 final size:47
Alignment explanation
Indices: 68237041--68237257 Score: 198
Period size: 47 Copynumber: 4.7 Consensus size: 47
68237031 TTACTTGTGT
68237041 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-ATATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACATATGATA
* * * * *
68237087 GCCAATGTAAGATCATGTCTGGTACATTGCATCGGCGTAGAGA-ATGAGT-
1 GCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGGC-CACACATATGA-TA
* * *
68237136 GCCAGTGTAAGACATGTCTGGGACATTCATCGGCCTCGACGT-TGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ACATATGATA
* * * *
68237183 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTA-AGAGT-TG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACA-TATGATA
* *
68237227 GCTAGTGTAAGACATGTTTGGGACATGCATC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC
68237258 AGCACTTATA
Statistics
Matches: 139, Mismatches: 23, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
44 27 0.19
45 2 0.01
46 15 0.11
47 55 0.40
48 21 0.15
49 17 0.12
50 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACATATGATA
Found at i:68237202 original size:95 final size:91
Alignment explanation
Indices: 68237039--68237257 Score: 271
Period size: 95 Copynumber: 2.4 Consensus size: 91
68237029 GATTACTTGT
68237039 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGATAGCCAATGTAAGATCATG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGATAGCCAATGTAAGATCATG
* *
68237104 TCTGGTACATTGCATCGGCGTAGAGAATGA
66 TCTGGGACA-CGCATCGGC-TA-AGAAT-A
* * * * *
68237134 GTGCCAGTGTAAGACATGTCTGGGACATTCATCGGCCTCGACGT-TGATAGCCAGTGTAAGA-CG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ATATGATAGCCAATGTAAGATCA
* *
68237197 TGTCTGGGACACGCATCGGCTAAGAGTT
64 TGTCTGGGACACGCATCGGCTAAGAATA
* *
68237225 GTGCTAGTGTAAGACATGTTTGGGACATGCATC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC
68237258 AGCACTTATA
Statistics
Matches: 110, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
91 30 0.27
92 4 0.04
93 2 0.02
94 8 0.07
95 48 0.44
96 17 0.15
97 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (91 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGATAGCCAATGTAAGATCATG
TCTGGGACACGCATCGGCTAAGAATA
Found at i:68237335 original size:49 final size:47
Alignment explanation
Indices: 68237041--68237359 Score: 240
Period size: 49 Copynumber: 6.7 Consensus size: 47
68237031 TTACTTGTGT
***
68237041 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAT-ATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGATGATGATA
* * * *
68237087 GCCAATGTAAGATCATGTCTGGTACATTGCATCGGCGTAGA-GAATGAGT-
1 GCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGGCCTTGATG-ATGA-TA
* * * *
68237136 GCCAGTGTAAGACATGTCTGGGACATTCATCGGCCTCGACGTTGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGATGATGATA
* * * *
68237183 GCCAGTGTAAGACGTGTCTGGGACACGCATCGG-CTAAGA-GTTG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-TGATGATGATA
* * * * *
68237227 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCACTT-ATAGACGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CTTGAT-GATGATA
* * * * *
68237275 ACTAGTATAAGACCATGTCTGGGACATGGCATCAGCCTTGATGATTATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGATGATGATA
* *
68237324 GCCAGTGTAAGACCATGTTTGGGATATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
68237360 AACATATCCC
Statistics
Matches: 219, Mismatches: 37, Indels: 31
0.76 0.13 0.11
Matches are distributed among these distances:
44 29 0.13
45 1 0.00
46 22 0.10
47 58 0.26
48 33 0.15
49 65 0.30
50 11 0.05
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGATGATGATA
Found at i:68238204 original size:55 final size:54
Alignment explanation
Indices: 68238120--68238308 Score: 261
Period size: 55 Copynumber: 3.4 Consensus size: 54
68238110 GCACTTAAAA
* *
68238120 TTTAAAGTCAGTGTTGAACACGGGTAGGCCACACGAGCATGTGTCATGGTCGTGT
1 TTTAAAGTCAATGTTGAACACGGGTAGGCCACACG-GCATGTGTCATGGCCGTGT
*
68238175 TTTAAAGTCAGTGTTGAACACGGGTAGGCCACACCGGCATGTGTCATGGCCGTGT
1 TTTAAAGTCAATGTTGAACACGGGTAGGCCACA-CGGCATGTGTCATGGCCGTGT
* ** *
68238230 TTTAAAGTCAATGTTGTACACAAGTAGGCCACACGGTCGTGTGTCATGGCCGTGT
1 TTTAAAGTCAATGTTGAACACGGGTAGGCCACACGG-CATGTGTCATGGCCGTGT
* * *
68238285 TATAAAGTCAACGTTGCACACGGG
1 TTTAAAGTCAATGTTGAACACGGG
68238309 CTAAGGTTAC
Statistics
Matches: 121, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
54 3 0.02
55 116 0.96
56 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (54 bp):
TTTAAAGTCAATGTTGAACACGGGTAGGCCACACGGCATGTGTCATGGCCGTGT
Found at i:68241599 original size:20 final size:20
Alignment explanation
Indices: 68241571--68241609 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
68241561 GACCACACAG
*
68241571 CCAACCCACACGGGTGTGTC
1 CCAACCCACACGGGCGTGTC
*
68241591 CCAAGCCACACGGGCGTGT
1 CCAACCCACACGGGCGTGT
68241610 GACTCCTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.38, G:0.28, T:0.13
Consensus pattern (20 bp):
CCAACCCACACGGGCGTGTC
Found at i:68244469 original size:46 final size:45
Alignment explanation
Indices: 68244419--68244594 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
68244409 TGTTTGGGCA
*
68244419 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
68244465 TCCGAACTCGTTGAGTTGAGCCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
68244512 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
68244558 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68244595 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.60
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:68244574 original size:93 final size:93
Alignment explanation
Indices: 68244415--68244586 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
68244405 AGGATGTTTG
* * * * *
68244415 GGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAG
68244480 TTGAGCCCGAGTTCGAGAGATGTAACTA
66 TTGAGCCCGAGTTCGAGAGATGTAACTA
*
68244508 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAG
*
68244573 TTGAGTCCGAGTTC
66 TTGAGCCCGAGTTC
68244587 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGCCCGAGTTCGAGAGATGTAACTA
Found at i:68247516 original size:29 final size:29
Alignment explanation
Indices: 68247483--68247551 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 29
68247473 GTATCGTATC
68247483 TTGGGTTTCTTTATCCTGGATCTCTTTAT
1 TTGGGTTTCTTTATCCTGGATCTCTTTAT
* * *
68247512 TTGGGTTTCTCTATCTTGGATTTCTTTAT
1 TTGGGTTTCTTTATCCTGGATCTCTTTAT
* *
68247541 TCGGTTTTCTT
1 TTGGGTTTCTT
68247552 GTTATCTTTG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.09, C:0.16, G:0.17, T:0.58
Consensus pattern (29 bp):
TTGGGTTTCTTTATCCTGGATCTCTTTAT
Found at i:68247530 original size:15 final size:15
Alignment explanation
Indices: 68247479--68247540 Score: 72
Period size: 15 Copynumber: 4.2 Consensus size: 15
68247469 CATAGTATCG
*
68247479 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTT
* *
68247494 TATCCTGGATCTCTT
1 TATCTTGGATTTCTT
* *
68247509 TAT-TTGGGTTTCTC
1 TATCTTGGATTTCTT
68247523 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
68247538 TAT
1 TAT
68247541 TCGGTTTTCT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
14 10 0.27
15 27 0.73
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:68249982 original size:46 final size:44
Alignment explanation
Indices: 68249925--68250101 Score: 194
Period size: 46 Copynumber: 3.9 Consensus size: 44
68249915 ATGTTTGGGC
68249925 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** *
68249969 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GA
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
* * *
68250018 ATCCAAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* *
68250063 CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68250102 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 15, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 66 0.61
47 31 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:68250089 original size:93 final size:93
Alignment explanation
Indices: 68249925--68250093 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
68249915 ATGTTTGGGC
* * * ***
68249925 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCAAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGTTG
68249990 AGTCCGAGTTCGAGAGATGTAACTAGGA
66 AGTCCGAGTTCGAGAGATGTAACTAGGA
*
68250018 ATCCAAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAGCTCGTTGAGTTG
1 ATCCAAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGTTG
68250083 AGTCCGAGTTC
66 AGTCCGAGTTC
68250094 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (93 bp):
ATCCAAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGTTG
AGTCCGAGTTCGAGAGATGTAACTAGGA
Found at i:68254642 original size:40 final size:40
Alignment explanation
Indices: 68254594--68254759 Score: 280
Period size: 40 Copynumber: 4.2 Consensus size: 40
68254584 GGACTAAGAT
*
68254594 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
68254634 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
68254674 CCGAAGGCATTTGTACGAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
68254714 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
68254753 CCGAAGG
1 CCGAAGG
68254760 TACTTGGGTT
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 15 0.12
40 106 0.88
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:68256154 original size:36 final size:36
Alignment explanation
Indices: 68256107--68256181 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
68256097 TACGGGGTGT
68256107 TACACTAAGTGGATATACCACAATAACACATATTGA
1 TACACTAAGTGGATATACCACAATAACACATATTGA
*
68256143 TACACTAAGTGGATATACCACGATAACACATATTGA
1 TACACTAAGTGGATATACCACAATAACACATATTGA
68256179 TAC
1 TAC
68256182 GTGTAACATG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25
Consensus pattern (36 bp):
TACACTAAGTGGATATACCACAATAACACATATTGA
Found at i:68256341 original size:48 final size:48
Alignment explanation
Indices: 68256268--68256390 Score: 167
Period size: 48 Copynumber: 2.6 Consensus size: 48
68256258 CAGTTACACG
*
68256268 TGTAACGTGGTGCTAAGTGGATATACCATGATTAAACATATTGATACA
1 TGTAACGTGGTGCTAAGTGGATATACCATGATTAAACATATCGATACA
* * * * * *
68256316 TGTAACATGGTGCTAAGTGGTTATACCATGATTACATATATCGGTTCA
1 TGTAACGTGGTGCTAAGTGGATATACCATGATTAAACATATCGATACA
*
68256364 T-TAATGTGGTGCTAAGTGGATATACCA
1 TGTAACGTGGTGCTAAGTGGATATACCA
68256391 CGGTTAAATA
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
47 23 0.35
48 42 0.65
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (48 bp):
TGTAACGTGGTGCTAAGTGGATATACCATGATTAAACATATCGATACA
Found at i:68256445 original size:133 final size:133
Alignment explanation
Indices: 68256147--68256445 Score: 411
Period size: 133 Copynumber: 2.2 Consensus size: 133
68256137 TATTGATACA
* * **
68256147 CTAAGTGGATATACCACGA-TAACACATATTGATACGTGTAACATGGTGCTGAGTGGATATGTCA
1 CTAAGTGGATATACCACGATTAA-ACATATTGATACATGTAACATGGTGCTAAGTGGATATACCA
* * *
68256211 CGGTTACATATATCGATTCATTAACGCGGTGCTAAGTGGATATACCACAGTTACACGTGTAACGT
65 CGATTACATATATCGATTCATTAACGCGGTGCTAAGTGGATATACCACAGTTAAACATGTAACGT
68256276 GGTG
130 GGTG
* * *
68256280 CTAAGTGGATATACCATGATTAAACATATTGATACATGTAACATGGTGCTAAGTGGTTATACCAT
1 CTAAGTGGATATACCACGATTAAACATATTGATACATGTAACATGGTGCTAAGTGGATATACCAC
* * * * *
68256345 GATTACATATATCGGTTCATTAATGTGGTGCTAAGTGGATATACCACGGTTAAATATGTAACGTG
66 GATTACATATATCGATTCATTAACGCGGTGCTAAGTGGATATACCACAGTTAAACATGTAACGTG
68256410 GTG
131 GTG
* * * *
68256413 CTAAGTGGATATGCCACGGTTATACATGTTGAT
1 CTAAGTGGATATACCACGATTAAACATATTGAT
68256446 TTGAAAAGTG
Statistics
Matches: 145, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
133 142 0.98
134 3 0.02
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (133 bp):
CTAAGTGGATATACCACGATTAAACATATTGATACATGTAACATGGTGCTAAGTGGATATACCAC
GATTACATATATCGATTCATTAACGCGGTGCTAAGTGGATATACCACAGTTAAACATGTAACGTG
GTG
Found at i:68260813 original size:6 final size:6
Alignment explanation
Indices: 68260804--68260849 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
68260794 GTTGAGGATT
* * *
68260804 AGGTAC AGGTAT AGGTAC AGGTAC AGGTAC AGTTAC AGGCAC AGGT
1 AGGTAC AGGTAC AGGTAC AGGTAC AGGTAC AGGTAC AGGTAC AGGT
68260850 TGTTAAGCAG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.33, C:0.15, G:0.33, T:0.20
Consensus pattern (6 bp):
AGGTAC
Found at i:68262778 original size:41 final size:39
Alignment explanation
Indices: 68262733--68262879 Score: 136
Period size: 40 Copynumber: 3.7 Consensus size: 39
68262723 CGATATCTCA
* *
68262733 CACACTAAGTACAATACATAGCCGAAGCTATTATAATCTTG
1 CACACTAAGTGCCATACATAGCCGAAGCTATT-TAATC-TG
* * * *
68262774 CACACTAAGTGTCATATATAGTCGAAGCTATTTCAAAT-AG
1 CACACTAAGTGCCATACATAGCCGAAGCTATTT--AATCTG
* * *
68262814 CACACTAAGTGCCATATATAGCTGAAGCTATCTCGAATC-G
1 CACACTAAGTGCCATACATAGCCGAAGCTAT-T-TAATCTG
*
68262854 TACACTAAGTGCCATACATAGCCGAA
1 CACACTAAGTGCCATACATAGCCGAA
68262880 TTGTCGAAAA
Statistics
Matches: 88, Mismatches: 13, Indels: 11
0.79 0.12 0.10
Matches are distributed among these distances:
40 57 0.65
41 28 0.32
42 3 0.03
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (39 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATTTAATCTG
Found at i:68263104 original size:12 final size:13
Alignment explanation
Indices: 68263078--68263108 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
68263068 ATATACTAAA
68263078 AATCAACTCATTT
1 AATCAACTCATTT
68263091 AATCAACT-ATTT
1 AATCAACTCATTT
68263103 AATCAA
1 AATCAA
68263109 TTCAACCCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.56
13 8 0.44
ACGTcount: A:0.45, C:0.19, G:0.00, T:0.35
Consensus pattern (13 bp):
AATCAACTCATTT
Found at i:68267621 original size:21 final size:20
Alignment explanation
Indices: 68267591--68267629 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
68267581 CAAAACTTGT
68267591 ATAACTATCATTAAACATTC
1 ATAACTATCATTAAACATTC
68267611 ATAATCTATCATTAAACAT
1 ATAA-CTATCATTAAACAT
68267630 CAAAATACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (20 bp):
ATAACTATCATTAAACATTC
Found at i:68268687 original size:101 final size:103
Alignment explanation
Indices: 68268525--68268732 Score: 375
Period size: 101 Copynumber: 2.0 Consensus size: 103
68268515 AACAGGCCAA
68268525 AATAAGCCAAATTACATGGCTATACACAAAACCAAGCATTCATCATTTGCAAGCCAAATCAATTG
1 AATAAGCCAAATTACATGGCTATA-AC--AACCAAGCATTCATCATTTGCAAGCCAAATCAATTG
68268590 GATAAATCCATTACCAACATATAGACCATATTAACCACAAC
63 GATAAATCCATTACCAACATATAGACCATATTAACCACAAC
68268631 AATAAGCCAAATTACATGGCTAT-AC-ACCAAGCATTCATCATTTGCAAGCCAAATCAATTGGAT
1 AATAAGCCAAATTACATGGCTATAACAACCAAGCATTCATCATTTGCAAGCCAAATCAATTGGAT
68268694 AAATCCATTACCAACATATAGACCATATTAACCACAAC
66 AAATCCATTACCAACATATAGACCATATTAACCACAAC
68268732 A
1 A
68268733 CCTATACATG
Statistics
Matches: 102, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
101 77 0.75
104 2 0.02
106 23 0.23
ACGTcount: A:0.44, C:0.25, G:0.09, T:0.23
Consensus pattern (103 bp):
AATAAGCCAAATTACATGGCTATAACAACCAAGCATTCATCATTTGCAAGCCAAATCAATTGGAT
AAATCCATTACCAACATATAGACCATATTAACCACAAC
Found at i:68271794 original size:20 final size:20
Alignment explanation
Indices: 68271755--68271793 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
68271745 ATACTCAGGG
*
68271755 CAATTTTATCGATACTTTTT
1 CAATTATATCGATACTTTTT
68271775 CAATTATATCGATA-TTTTT
1 CAATTATATCGATACTTTTT
68271794 TAGGTTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.28, C:0.13, G:0.05, T:0.54
Consensus pattern (20 bp):
CAATTATATCGATACTTTTT
Found at i:68278743 original size:59 final size:60
Alignment explanation
Indices: 68278651--68278770 Score: 233
Period size: 59 Copynumber: 2.0 Consensus size: 60
68278641 GCCAAAATTC
68278651 ACTTTTACTAAACTTAGCATACAGCTGCTTATCTCTCAAAG-TTGCAAAACTATCCTCAA
1 ACTTTTACTAAACTTAGCATACAGCTGCTTATCTCTCAAAGTTTGCAAAACTATCCTCAA
68278710 ACTTTTACTAAACTTAGCATACAGCTGCTTATCTCTCAAAGTTTGCAAAACTATCCTCAA
1 ACTTTTACTAAACTTAGCATACAGCTGCTTATCTCTCAAAGTTTGCAAAACTATCCTCAA
68278770 A
1 A
68278771 TGCTCAGCAT
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
59 41 0.68
60 19 0.32
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.33
Consensus pattern (60 bp):
ACTTTTACTAAACTTAGCATACAGCTGCTTATCTCTCAAAGTTTGCAAAACTATCCTCAA
Found at i:68291144 original size:58 final size:58
Alignment explanation
Indices: 68291013--68291132 Score: 231
Period size: 58 Copynumber: 2.1 Consensus size: 58
68291003 TATAACATCA
68291013 ATAACTTAAAAATATAATTATAATATTTTAAAGTTTAAAACCAATTTAAATCAACCAT
1 ATAACTTAAAAATATAATTATAATATTTTAAAGTTTAAAACCAATTTAAATCAACCAT
*
68291071 ATAACTTAAAAATATAATTATAATATTTTAATGTTTAAAACCAATTTAAATCAACCAT
1 ATAACTTAAAAATATAATTATAATATTTTAAAGTTTAAAACCAATTTAAATCAACCAT
68291129 ATAA
1 ATAA
68291133 TTTAGAGATA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 61 1.00
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.37
Consensus pattern (58 bp):
ATAACTTAAAAATATAATTATAATATTTTAAAGTTTAAAACCAATTTAAATCAACCAT
Found at i:68291368 original size:16 final size:17
Alignment explanation
Indices: 68291340--68291379 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
68291330 GAGAGACGAA
68291340 AGAAAATTAGAAAGA-T
1 AGAAAATTAGAAAGATT
68291356 AGAATAATT-GAAAGATT
1 AGAA-AATTAGAAAGATT
68291373 AGAAAAT
1 AGAAAAT
68291380 ATATTCACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.60, C:0.00, G:0.17, T:0.23
Consensus pattern (17 bp):
AGAAAATTAGAAAGATT
Found at i:68292240 original size:18 final size:17
Alignment explanation
Indices: 68292217--68292269 Score: 72
Period size: 19 Copynumber: 3.0 Consensus size: 17
68292207 TTTAAAAATT
68292217 ATAAAAAATATTCAAAAA
1 ATAAAAAA-ATTCAAAAA
68292235 AT-AAAAAATTCAAAAA
1 ATAAAAAAATTCAAAAA
68292251 ATATATAAAAATTCAAAAA
1 ATA-A-AAAAATTCAAAAA
68292270 GAAAACATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
16 11 0.34
17 5 0.16
18 3 0.09
19 13 0.41
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.23
Consensus pattern (17 bp):
ATAAAAAAATTCAAAAA
Found at i:68295659 original size:2 final size:2
Alignment explanation
Indices: 68295647--68295683 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
68295637 CTGTCTGTCT
*
68295647 GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
68295684 GGGGGGTGGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:68298817 original size:29 final size:27
Alignment explanation
Indices: 68298763--68298817 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
68298753 ATTAATTATA
*
68298763 ATATAATTTTTAATAAATATATTTGTT
1 ATATAATTTTTAATAAATACATTTGTT
68298790 ATATAATTTGATTAA-AAATACACTTTGT
1 ATATAATTT--TTAATAAATACA-TTTGT
68298818 CCTATAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 9 0.38
28 6 0.25
29 9 0.38
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.49
Consensus pattern (27 bp):
ATATAATTTTTAATAAATACATTTGTT
Found at i:68298966 original size:22 final size:22
Alignment explanation
Indices: 68298935--68298993 Score: 109
Period size: 22 Copynumber: 2.7 Consensus size: 22
68298925 TCTAGAACTA
*
68298935 AGCTATGTTATTTTCATTTATT
1 AGCTAAGTTATTTTCATTTATT
68298957 AGCTAAGTTATTTTCATTTATT
1 AGCTAAGTTATTTTCATTTATT
68298979 AGCTAAGTTATTTTC
1 AGCTAAGTTATTTTC
68298994 TTAGGTTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.54
Consensus pattern (22 bp):
AGCTAAGTTATTTTCATTTATT
Found at i:68304927 original size:23 final size:24
Alignment explanation
Indices: 68304874--68304929 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
68304864 AGCCTTGTAA
* *
68304874 CGGGAAGCTCACACAGAGCCATTT
1 CGGGAAGCTCACAAAGAGCCATAT
68304898 CGGGAAGCTCACAAAGAGCC-TAT
1 CGGGAAGCTCACAAAGAGCCATAT
68304921 CGGGAAGCT
1 CGGGAAGCT
68304930 TATTTGGGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 11 0.37
24 19 0.63
ACGTcount: A:0.30, C:0.27, G:0.29, T:0.14
Consensus pattern (24 bp):
CGGGAAGCTCACAAAGAGCCATAT
Found at i:68308582 original size:17 final size:17
Alignment explanation
Indices: 68308556--68308590 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
68308546 ATCATTTTGT
68308556 AGTTAAAAAAAA-TCAA
1 AGTTAAAAAAAATTCAA
68308572 AGTTGAAAAAAAATTCAA
1 AGTT-AAAAAAAATTCAA
68308590 A
1 A
68308591 AAAAAATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 8 0.47
18 5 0.29
ACGTcount: A:0.66, C:0.06, G:0.09, T:0.20
Consensus pattern (17 bp):
AGTTAAAAAAAATTCAA
Found at i:68308594 original size:12 final size:12
Alignment explanation
Indices: 68308577--68308640 Score: 75
Period size: 12 Copynumber: 5.7 Consensus size: 12
68308567 ATCAAAGTTG
68308577 AAAAAAAATTCA
1 AAAAAAAATTCA
68308589 AAAAAAAATTCAA
1 AAAAAAAATTC-A
*
68308602 AAAAAAAATT-G
1 AAAAAAAATTCA
68308613 AAAAAAAA-T--
1 AAAAAAAATTCA
68308622 -AAAAAAATTCA
1 AAAAAAAATTCA
68308633 AAAAAAAA
1 AAAAAAAA
68308641 AGTGATTGGA
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
8 7 0.15
9 1 0.02
10 1 0.02
11 8 0.17
12 18 0.39
13 11 0.24
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.14
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:68308627 original size:19 final size:19
Alignment explanation
Indices: 68308603--68308639 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
68308593 AAAATTCAAA
*
68308603 AAAAAAATTGAAAAAAAAT
1 AAAAAAATTCAAAAAAAAT
68308622 AAAAAAATTCAAAAAAAA
1 AAAAAAATTCAAAAAAAA
68308640 AAGTGATTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.81, C:0.03, G:0.03, T:0.14
Consensus pattern (19 bp):
AAAAAAATTCAAAAAAAAT
Found at i:68308641 original size:13 final size:13
Alignment explanation
Indices: 68308577--68308620 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
68308567 ATCAAAGTTG
68308577 AAAAAAAATTC-A
1 AAAAAAAATTCAA
68308589 AAAAAAAATTCAA
1 AAAAAAAATTCAA
*
68308602 AAAAAAAATTGAA
1 AAAAAAAATTCAA
68308615 AAAAAA
1 AAAAAA
68308621 TAAAAAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 11 0.37
13 19 0.63
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.14
Consensus pattern (13 bp):
AAAAAAAATTCAA
Found at i:68310714 original size:15 final size:15
Alignment explanation
Indices: 68310682--68310722 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
68310672 TTGGAAGAGA
68310682 AAAAGAAAAAG-AAC
1 AAAAGAAAAAGAAAC
* *
68310696 AAAATAAAAAGAAAG
1 AAAAGAAAAAGAAAC
68310711 AAAAGAAAAAGA
1 AAAAGAAAAAGA
68310723 GTGGAAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.80, C:0.02, G:0.15, T:0.02
Consensus pattern (15 bp):
AAAAGAAAAAGAAAC
Found at i:68314630 original size:40 final size:40
Alignment explanation
Indices: 68314586--68314774 Score: 297
Period size: 40 Copynumber: 4.7 Consensus size: 40
68314576 GCTACTAGCT
*
68314586 CAAATGCCTTCGGGACTTAGCTCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
68314626 CAAATGCCTTCGGGACCTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
68314666 CGAATGCCTTCGGGACTTAGTCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
68314706 CAAATGCCTTCGGTACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
68314746 CAAATGCCTTCAGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
68314775 CAATCCGAAT
Statistics
Matches: 134, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:68322710 original size:40 final size:40
Alignment explanation
Indices: 68322666--68322854 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
68322656 GCTACTAGCT
*
68322666 CAAATGCCTTCGGGACTTAGCTCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
68322706 CAAATGCCTTTGGGACCTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
68322746 CGAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
68322786 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
68322826 CAAATGCCTTCGTGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
68322855 CAATCCGAAT
Statistics
Matches: 135, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 135 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:68325260 original size:27 final size:26
Alignment explanation
Indices: 68325230--68325285 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 26
68325220 ACATAGCTTA
68325230 AATGTGTCTAGTTTAG-GACATCAATTT
1 AATGTGTCTAGTTTAGAGACA--AATTT
68325257 AATGTGTCTAGTTTAGAGACAAATTT
1 AATGTGTCTAGTTTAGAGACAAATTT
68325283 AAT
1 AAT
68325286 TAGTTACAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 8 0.29
27 16 0.57
28 4 0.14
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (26 bp):
AATGTGTCTAGTTTAGAGACAAATTT
Found at i:68329663 original size:64 final size:64
Alignment explanation
Indices: 68329558--68329765 Score: 168
Period size: 67 Copynumber: 3.2 Consensus size: 64
68329548 CATCATTTGT
*
68329558 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATAATATGTGTACACCATG
1 ACAAGAGAGCTACG-G-GA-TAT-ATGTAGCTAGGTCGCATGGGTGATAATATGTGTACACCATG
68329623 TAG
62 TAG
* * * ** * *
68329626 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGT-GAT-AATATG-TGTACACCATGT
68329691 AG
63 AG
* * * * * * * * **
68329693 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTTTTCACCATGTCT
1 ACAAGAGAGCTACGGGATATA-TGTAGCTAGGTCGCATGGGTGATAATATGTGTACACCATGTAG
68329756 ACAAGAGAGC
1 ACAAGAGAGC
68329766 CAAAATTATG
Statistics
Matches: 112, Mismatches: 24, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
63 18 0.16
64 21 0.19
65 7 0.06
66 18 0.16
67 32 0.29
68 16 0.14
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGATAATATGTGTACACCATGTAG
Found at i:68332878 original size:26 final size:26
Alignment explanation
Indices: 68332842--68332895 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
68332832 GGAGAAGGAA
68332842 AAGTTCTTTCTATCTTGTTAGTTTCC
1 AAGTTCTTTCTATCTTGTTAGTTTCC
68332868 AAGTTCTTTCTATCTTGTTAGTTTCC
1 AAGTTCTTTCTATCTTGTTAGTTTCC
68332894 AA
1 AA
68332896 CAAGCATTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.19, C:0.19, G:0.11, T:0.52
Consensus pattern (26 bp):
AAGTTCTTTCTATCTTGTTAGTTTCC
Found at i:68333052 original size:22 final size:21
Alignment explanation
Indices: 68333021--68333065 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
68333011 TCTTTTGTCA
*
68333021 CTCATGTTTTTAACTCTCTTTT
1 CTCATGTTTTCAACTCT-TTTT
* *
68333043 CTCATTTTTTCGACTCTTTTT
1 CTCATGTTTTCAACTCTTTTT
68333064 CT
1 CT
68333066 TTTCATTCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.11, C:0.24, G:0.04, T:0.60
Consensus pattern (21 bp):
CTCATGTTTTCAACTCTTTTT
Found at i:68333077 original size:15 final size:14
Alignment explanation
Indices: 68333056--68333097 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
68333046 ATTTTTTCGA
68333056 CTCTTTTTC-TTTT
1 CTCTTTTTCTTTTT
*
68333069 CATTCTTTTTATTTTT
1 C--TCTTTTTCTTTTT
68333085 CTCTTTTTCTTTT
1 CTCTTTTTCTTTT
68333098 GATCTCTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
13 1 0.04
14 11 0.46
15 7 0.29
16 5 0.21
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (14 bp):
CTCTTTTTCTTTTT
Found at i:68343997 original size:49 final size:49
Alignment explanation
Indices: 68343941--68344592 Score: 1017
Period size: 49 Copynumber: 13.6 Consensus size: 49
68343931 TATTTGAATA
*
68343941 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
68343990 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
68344039 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
68344086 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
68344135 AATGTGAAAGTGTATATATATGTGATAAGGCCGAGTGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
68344184 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
68344233 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
68344280 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
68344329 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
68344378 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
68344425 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
68344472 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
* * * * *
68344519 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
68344566 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
68344593 TCCCGAAGGG
Statistics
Matches: 572, Mismatches: 25, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
47 275 0.48
48 1 0.00
49 296 0.52
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:68344249 original size:145 final size:143
Alignment explanation
Indices: 68343941--68344592 Score: 1042
Period size: 145 Copynumber: 4.5 Consensus size: 143
68343931 TATTTGAATA
68343941 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
68344006 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
64 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
*
68344071 ATGGCCAATGTGATG
129 ATGGCCGATGTGATG
68344086 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
68344151 TATATGTGATAAGGCCGAGTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
64 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
68344216 TAATGGCCGATGTGATG
127 GAATGGCCGATGTGATG
*
68344233 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
68344298 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
66 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGA
68344363 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
* * *
68344378 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
68344441 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
68344506 GGCCGATGTGGTG
131 GGCCGATGTGATG
* * * * *
68344519 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
68344583 -ATGTGATAAG
66 TATGTGATAAG
68344593 TCCCGAAGGG
Statistics
Matches: 480, Mismatches: 23, Indels: 12
0.93 0.04 0.02
Matches are distributed among these distances:
141 94 0.20
142 1 0.00
143 46 0.10
145 294 0.61
147 45 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
GGCCGATGTGATG
Found at i:68346965 original size:23 final size:24
Alignment explanation
Indices: 68346934--68347038 Score: 151
Period size: 23 Copynumber: 4.4 Consensus size: 24
68346924 CTAGAGGCCT
*
68346934 AGCCTCTTTTAATAATTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
68346958 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
68346982 AGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-TAATAACTGGGGCATA
*
68347007 AGCCC-TTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
68347030 AGCCCTTTT
1 AGCCCTTTT
68347039 GCACTTCCTC
Statistics
Matches: 74, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
23 36 0.49
24 18 0.24
25 20 0.27
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:68347016 original size:48 final size:48
Alignment explanation
Indices: 68346945--68347037 Score: 152
Period size: 48 Copynumber: 1.9 Consensus size: 48
68346935 GCCTCTTTTA
* *
68346945 ATAATTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTATC
68346993 ATAACTGGGGCATAAGCCC-TTTAATAACTAGGGCATAAGCCCTTT
1 ATAACTGGGGCA-AAGCCCTTTTAATAACTAGGGCATAAGCCCTTT
68347038 TGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
48 36 0.86
49 6 0.14
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTATC
Found at i:68347116 original size:20 final size:20
Alignment explanation
Indices: 68347091--68347154 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
68347081 TGAATACATT
68347091 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
*
68347111 ATGTGCATATCATACATGTC
1 ATGTGCATATCATACATATC
*
68347131 ATGTGCATATCATACATACC
1 ATGTGCATATCATACATATC
68347151 ATGT
1 ATGT
68347155 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.34
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:68347121 original size:11 final size:11
Alignment explanation
Indices: 68347091--68347143 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
68347081 TGAATACATT
68347091 ATGTGCATATC
1 ATGTGCATATC
*
68347102 A--TACATATC
1 ATGTGCATATC
68347111 ATGTGCATATC
1 ATGTGCATATC
* *
68347122 A--TACATGTC
1 ATGTGCATATC
68347131 ATGTGCATATC
1 ATGTGCATATC
68347142 AT
1 AT
68347144 ACATACCATG
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.47
11 17 0.53
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (11 bp):
ATGTGCATATC
Found at i:68349663 original size:19 final size:18
Alignment explanation
Indices: 68349626--68349669 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
68349616 ATACTTACAG
68349626 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
68349643 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
68349662 TACTAATT
1 TAATAATT
68349670 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:68351949 original size:24 final size:24
Alignment explanation
Indices: 68351885--68351955 Score: 101
Period size: 23 Copynumber: 3.0 Consensus size: 24
68351875 GCTTGATCAT
*
68351885 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
68351910 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68351933 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
68351956 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
23 18 0.42
24 17 0.40
25 8 0.19
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:68352033 original size:20 final size:20
Alignment explanation
Indices: 68352008--68352071 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
68351998 TGAATACATT
68352008 ATGTGCATATCATACATACC
1 ATGTGCATATCATACATACC
**
68352028 ATGTGCATATCATACATGTC
1 ATGTGCATATCATACATACC
68352048 ATGTGCATATCATACATACC
1 ATGTGCATATCATACATACC
68352068 ATGT
1 ATGT
68352072 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATGTGCATATCATACATACC
Found at i:68354572 original size:19 final size:18
Alignment explanation
Indices: 68354535--68354578 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
68354525 ATACTTACAG
68354535 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
68354552 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
68354571 TACTAATT
1 TAATAATT
68354579 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:68362902 original size:39 final size:39
Alignment explanation
Indices: 68362845--68362997 Score: 198
Period size: 39 Copynumber: 3.9 Consensus size: 39
68362835 ATTTACATGG
* * * *
68362845 TAATCATATTAACTTTTAAGCATATATCACATTACACATA
1 TAATCACA-TAACATTTAAGCATATATCACAATACTCATA
68362885 TAATCACATAACATTTAAGCATATATCACAATACTCATA
1 TAATCACATAACATTTAAGCATATATCACAATACTCATA
* * *
68362924 TAATCACATAACATTCAAACATATATCATAATACTCATA
1 TAATCACATAACATTTAAGCATATATCACAATACTCATA
** * *
68362963 TAATCATTTAACATTGAAGCATATATCATAATACT
1 TAATCACATAACATTTAAGCATATATCACAATACT
68362998 AAAAAACATG
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 95 0.93
40 7 0.07
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.34
Consensus pattern (39 bp):
TAATCACATAACATTTAAGCATATATCACAATACTCATA
Found at i:68363067 original size:16 final size:15
Alignment explanation
Indices: 68363032--68363070 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
68363022 GCATAATGGC
*
68363032 CACATATCATATAAA
1 CACATATCAAATAAA
*
68363047 CACATATCACAATATA
1 CACATATCA-AATAAA
68363063 CACATATC
1 CACATATC
68363071 CATAATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (15 bp):
CACATATCAAATAAA
Found at i:68364126 original size:32 final size:32
Alignment explanation
Indices: 68364090--68364155 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
68364080 AATTAGATCA
68364090 TATTTTAAAATTCAACCTAATAAACCCCATTC
1 TATTTTAAAATTCAACCTAATAAACCCCATTC
68364122 TATTTTAAAATTCAACCTAATAAACCCCATTC
1 TATTTTAAAATTCAACCTAATAAACCCCATTC
68364154 TA
1 TA
68364156 AGTTTATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (32 bp):
TATTTTAAAATTCAACCTAATAAACCCCATTC
Found at i:68366807 original size:40 final size:42
Alignment explanation
Indices: 68366713--68366973 Score: 147
Period size: 40 Copynumber: 6.5 Consensus size: 42
68366703 TATTCGAATG
* * *
68366713 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCGAGGTGACT
* * *
68366754 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCGAGGTGACT
** * * ** * *
68366794 ATATCCGGGCTAAGA-CTAGAAGGAATTTGTGTTA-GCGATT
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCGAGGTGACT
** * * * *
68366834 ATATTTGGGCTAA-AACCCGAAGGCATTTGTGCTA-GCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCGAGGTGACT
* ** * *
68366874 ATATCCGGGTTAAG-TCCCGAAGGCATTTATGCTA-GTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCGAGGTGACT
* * * *
68366914 ACATCCGGGCTAAGA-CCCGAAGGCCTT-GTGC-AAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCGAGGTGA-CT
68366953 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
68366974 ATTACTTGAG
Statistics
Matches: 173, Mismatches: 38, Indels: 21
0.75 0.16 0.09
Matches are distributed among these distances:
37 1 0.01
38 15 0.09
39 12 0.07
40 114 0.66
41 30 0.17
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (42 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCGAGGTGACT
Found at i:68366924 original size:80 final size:80
Alignment explanation
Indices: 68366713--68366973 Score: 249
Period size: 80 Copynumber: 3.3 Consensus size: 80
68366703 TATTCGAATG
* * * *
68366713 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
68366778 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* ** * * * * ** *
68366794 ATATCCGGGCTAAGACTAGAAGGAATTTGTGTTAGCGATTATATTTGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
68366859 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
68366874 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
68366939 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
68366953 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
68366974 ATTACTTGAG
Statistics
Matches: 141, Mismatches: 37, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
78 13 0.09
79 14 0.10
80 86 0.61
81 28 0.20
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Done.