Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 207 of 352
Found at i:68366936 original size:120 final size:121
Alignment explanation
Indices: 68366719--68366936 Score: 271
Period size: 120 Copynumber: 1.8 Consensus size: 121
68366709 AATGATATCC
** * * *
68366719 GGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGCATTCGT
1 GGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCATTCAT
* * *
68366784 GCGAGTTGCTATATCCGGGCTAAGACTAGAAGGAATTTGTGTTAGCGATTATATTT
66 GCGAGTTGCCACATCCGGGCTAAGACCAGAAGGAATTTGTGTTAGCGATTATATTT
* ** *
68366840 GGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGTTAAG-TCCCGAAGGCATTTA
1 GGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGGCATTCA
* *
68366903 TGCTAG-TGACCACATCCGGGCTAAGACCCGAAGG
65 TGCGAGTTG-CCACATCCGGGCTAAGACCAGAAGG
68366937 CCTTGTGCAA
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
119 3 0.04
120 53 0.65
121 25 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (121 bp):
GGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCATTCAT
GCGAGTTGCCACATCCGGGCTAAGACCAGAAGGAATTTGTGTTAGCGATTATATTT
Found at i:68374941 original size:40 final size:40
Alignment explanation
Indices: 68374817--68375041 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 40
68374807 TATTCGAATG
* * *
68374817 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * * * *
68374858 ATAACCGGACTAAGATCCGAAGCCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
* * *
68374898 ATATCTGGGCTAAGACCCGAAGGCATTTGTGTTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * *
68374938 ATATCTGGGCTAAAACCAGAAGGCATTTGTGCTAACGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * * *
68374978 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
68375018 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
68375042 CTTGTGCAAG
Statistics
Matches: 147, Mismatches: 35, Indels: 5
0.79 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 118 0.80
41 28 0.19
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:68375040 original size:80 final size:80
Alignment explanation
Indices: 68374817--68375077 Score: 242
Period size: 80 Copynumber: 3.3 Consensus size: 80
68374807 TATTCGAATG
* * * * *
68374817 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
**
68374882 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGACGCT
* * * * * * * *
68374898 ATATCTGGGCTAAGACCCGAAGGCATTTGTGTTAGCGATTATATCTGGGCTAAAACCAGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
68374963 TTTGTGCTA-ACGACT
66 TTCGTGCGAGACG-CT
* * * * *
68374978 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
68375043 TT-GTGCAAGTA-GTT
66 TTCGTGCGAG-ACGCT
*
68375057 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
68375078 ATTACTTGAG
Statistics
Matches: 143, Mismatches: 34, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
78 13 0.09
79 13 0.09
80 86 0.60
81 31 0.22
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGACGCT
Found at i:68376628 original size:8 final size:8
Alignment explanation
Indices: 68376615--68376658 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
68376605 TGTATGCTTG
68376615 TGAAATTA
1 TGAAATTA
68376623 TGAAATTA
1 TGAAATTA
*
68376631 TGAAATTG
1 TGAAATTA
*
68376639 TGAAATTG
1 TGAAATTA
68376647 TGAAATTA
1 TGAAATTA
68376655 TGAA
1 TGAA
68376659 CATATATGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.36
Consensus pattern (8 bp):
TGAAATTA
Found at i:68376639 original size:24 final size:24
Alignment explanation
Indices: 68376612--68376658 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
68376602 ATATGTATGC
68376612 TTGTGAAATTATGAAATTATGAAA
1 TTGTGAAATTATGAAATTATGAAA
*
68376636 TTGTGAAATTGTGAAATTATGAA
1 TTGTGAAATTATGAAATTATGAA
68376659 CATATATGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (24 bp):
TTGTGAAATTATGAAATTATGAAA
Found at i:68376755 original size:36 final size:36
Alignment explanation
Indices: 68376715--68376783 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
68376705 TTTGAAAGTG
* *
68376715 AATATGAGGGTGTGTTGTCCATGCCATGTGACATTA
1 AATATGAGGGTATGTTATCCATGCCATGTGACATTA
* * *
68376751 AATATGTGGGTATGTTATTCATGTCATGTGACA
1 AATATGAGGGTATGTTATCCATGCCATGTGACA
68376784 GTGTTTATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (36 bp):
AATATGAGGGTATGTTATCCATGCCATGTGACATTA
Found at i:68378419 original size:50 final size:52
Alignment explanation
Indices: 68378310--68378430 Score: 174
Period size: 50 Copynumber: 2.4 Consensus size: 52
68378300 ATGAACAAAT
* * *
68378310 GAGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
* * *
68378362 GAATTACATAATGCATGTCATAATTT-ATGATGCAAAC-TTAACTTACATGA
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
68378412 GAGTTACATAATGCATGAC
1 GAGTTACATAATGCATGAC
68378431 TTTATTAAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 28 0.46
51 11 0.18
52 22 0.36
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
Found at i:68378533 original size:39 final size:39
Alignment explanation
Indices: 68378453--68378533 Score: 126
Period size: 39 Copynumber: 2.1 Consensus size: 39
68378443 GAACACATAT
* * * *
68378453 TAATGGTGTTCAAACTATGACATAATTAAATACTCATAC
1 TAATGATGTTCAAACTATGACATAATTAAAGACACAAAC
68378492 TAATGATGTTCAAACTATGACATAATTAAAGACACAAAC
1 TAATGATGTTCAAACTATGACATAATTAAAGACACAAAC
68378531 TAA
1 TAA
68378534 AATAACTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.30
Consensus pattern (39 bp):
TAATGATGTTCAAACTATGACATAATTAAAGACACAAAC
Found at i:68384043 original size:22 final size:23
Alignment explanation
Indices: 68384015--68384057 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
68384005 GCTATAAATC
*
68384015 TCACAAT-TATAGTTTTAATTAG
1 TCACAATGTATAGTTATAATTAG
*
68384037 TCACAATGTTTAGTTATAATT
1 TCACAATGTATAGTTATAATT
68384058 TTAATTAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (23 bp):
TCACAATGTATAGTTATAATTAG
Found at i:68384063 original size:29 final size:29
Alignment explanation
Indices: 68384021--68384077 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
68384011 AATCTCACAA
*
68384021 TTATAGTTTTAATTAGTCACAATGTTTAG
1 TTATAATTTTAATTAGTCACAATGTTTAG
68384050 TTATAATTTTAATTAGTCACAATGTTTA
1 TTATAATTTTAATTAGTCACAATGTTTA
68384078 CTTTAACAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.49
Consensus pattern (29 bp):
TTATAATTTTAATTAGTCACAATGTTTAG
Found at i:68384772 original size:42 final size:42
Alignment explanation
Indices: 68384641--68384855 Score: 238
Period size: 42 Copynumber: 5.1 Consensus size: 42
68384631 GAGAATCTCA
* * * * *
68384641 TACACACAGTATCATACCAATGCCATATCCCAGATATGGTCT
1 TACACAAAGTCTCATATCGATGCCATATACCAGATATGGTCT
* *
68384683 TACATGAAA-TCTCGTATCGATGCCA-ATAGCCCA-ACTATGGTCT
1 TACA-CAAAGTCTCATATCGATGCCATATA--CCAGA-TATGGTCT
* * * *
68384726 TACACGAAGTCTCATATCGATGCCACATACTAGCTATGGTCT
1 TACACAAAGTCTCATATCGATGCCATATACCAGATATGGTCT
* *
68384768 TACACAAAGTCTCATATCAATGCCATATCCCAGATATGGTCT
1 TACACAAAGTCTCATATCGATGCCATATACCAGATATGGTCT
* *
68384810 TACACAAAGTCTCATCTCGATGCCATATCCCAGATATGGTCT
1 TACACAAAGTCTCATATCGATGCCATATACCAGATATGGTCT
68384852 TACA
1 TACA
68384856 TGTAACCTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
41 2 0.01
42 109 0.75
43 32 0.22
44 3 0.02
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (42 bp):
TACACAAAGTCTCATATCGATGCCATATACCAGATATGGTCT
Found at i:68386518 original size:40 final size:40
Alignment explanation
Indices: 68386474--68386587 Score: 120
Period size: 40 Copynumber: 2.9 Consensus size: 40
68386464 ACCACAAATG
* * *
68386474 TGGACATGCCACTAGTATTGTAGACAAGCTACCGGTAATA
1 TGGACAAGCCACCAGTATTGTAGACAAGCTACCAGTAATA
* * * ** * *
68386514 TGGACAAGCCACCAGTAATGCAGATAAATTGCCAGTAGTA
1 TGGACAAGCCACCAGTATTGTAGACAAGCTACCAGTAATA
* *
68386554 TGGACAAGCTACCAGTATTGTAGACAAGCCACCA
1 TGGACAAGCCACCAGTATTGTAGACAAGCTACCA
68386588 AAATTGTAGA
Statistics
Matches: 56, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (40 bp):
TGGACAAGCCACCAGTATTGTAGACAAGCTACCAGTAATA
Found at i:68386571 original size:80 final size:80
Alignment explanation
Indices: 68386434--68386582 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 80
68386424 CACCAGTTTG
* * * *
68386434 TGGACAAGCCATAAGTAATGCAGATAAACTACCACAAATGTGGACATGCCACTAGTATTGTAGAC
1 TGGACAAGCCACAAGTAATGCAGATAAACTACCACAAATATGGACAAGCCACCAGTATTGTAGAC
68386499 AAGCTACCGGTAATA
66 AAGCTACCGGTAATA
* * * ** * *
68386514 TGGACAAGCCACCAGTAATGCAGATAAATTGCCAGTAGTATGGACAAGCTACCAGTATTGTAGAC
1 TGGACAAGCCACAAGTAATGCAGATAAACTACCACAAATATGGACAAGCCACCAGTATTGTAGAC
68386579 AAGC
66 AAGC
68386583 CACCAAAATT
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 58 1.00
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (80 bp):
TGGACAAGCCACAAGTAATGCAGATAAACTACCACAAATATGGACAAGCCACCAGTATTGTAGAC
AAGCTACCGGTAATA
Found at i:68386579 original size:20 final size:20
Alignment explanation
Indices: 68386487--68386601 Score: 77
Period size: 20 Copynumber: 5.8 Consensus size: 20
68386477 ACATGCCACT
68386487 AGTATTGTAGACAAGCTACC
1 AGTATTGTAGACAAGCTACC
* * * * *
68386507 GGTAATATGGACAAGCCACC
1 AGTATTGTAGACAAGCTACC
* * * ** *
68386527 AGTAATGCAGATAAATTGCC
1 AGTATTGTAGACAAGCTACC
* * *
68386547 AGTAGTATGGACAAGCTACC
1 AGTATTGTAGACAAGCTACC
*
68386567 AGTATTGTAGACAAGCCACC
1 AGTATTGTAGACAAGCTACC
**
68386587 AAAATTGTAGACAAG
1 AGTATTGTAGACAAG
68386602 TTGCAAGTAC
Statistics
Matches: 67, Mismatches: 28, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 67 1.00
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (20 bp):
AGTATTGTAGACAAGCTACC
Found at i:68386600 original size:80 final size:80
Alignment explanation
Indices: 68386431--68386601 Score: 175
Period size: 80 Copynumber: 2.1 Consensus size: 80
68386421 ACTCACCAGT
* * * *
68386431 TTGTGGACAAGCCATAAGTAATGCAGATAAACTACCACAAATGTGGACATGCCACTAGTATTGTA
1 TTGT-GACAAGCCACAAGTAATGCAGATAAACTACCACAAATATGGACAAGCCACCAGTATTGTA
* **
68386496 GACAAGCTACCGGTAA
65 GACAAGCCACCGAAAA
* * * ** * *
68386512 TATG-GACAAGCCACCAGTAATGCAGATAAATTGCCAGTAGTATGGACAAGCTACCAGTATTGTA
1 T-TGTGACAAGCCACAAGTAATGCAGATAAACTACCACAAATATGGACAAGCCACCAGTATTGTA
68386576 GACAAGCCACC-AAAA
65 GACAAGCCACCGAAAA
68386591 TTGTAGACAAG
1 TTGT-GACAAG
68386602 TTGCAAGTAC
Statistics
Matches: 73, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.03
79 3 0.04
80 65 0.89
81 1 0.01
82 2 0.03
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (80 bp):
TTGTGACAAGCCACAAGTAATGCAGATAAACTACCACAAATATGGACAAGCCACCAGTATTGTAG
ACAAGCCACCGAAAA
Found at i:68392797 original size:42 final size:43
Alignment explanation
Indices: 68392732--68392834 Score: 122
Period size: 42 Copynumber: 2.4 Consensus size: 43
68392722 CGATATGTGT
* * *
68392732 TTTCGTGTAAGACCACGTCTGGGA-CGTTGGCATC-GTATTTGA
1 TTTCGTGTAAGACCACGTATGGGATAG-TGGCATCAATATTTGA
68392774 TTTCGTGTAAGACC-CTGTATGGGATAGTGGCATCAATATTTGA
1 TTTCGTGTAAGACCAC-GTATGGGATAGTGGCATCAATATTTGA
* *
68392817 TTACATGTAAGACCACGT
1 TTTCGTGTAAGACCACGT
68392835 CTAGGATGTT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.02
42 28 0.54
43 22 0.42
44 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
TTTCGTGTAAGACCACGTATGGGATAGTGGCATCAATATTTGA
Found at i:68403250 original size:16 final size:16
Alignment explanation
Indices: 68403231--68403266 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
68403221 CTGAAATGCA
68403231 GAAATACCGAAAAGCT
1 GAAATACCGAAAAGCT
*
68403247 GAAATGCCGAAAAGCT
1 GAAATACCGAAAAGCT
68403263 GAAA
1 GAAA
68403267 GTTTGGCTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.50, C:0.17, G:0.22, T:0.11
Consensus pattern (16 bp):
GAAATACCGAAAAGCT
Found at i:68403532 original size:29 final size:28
Alignment explanation
Indices: 68403477--68403592 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
68403467 GTGAGCATGA
* * *
68403477 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
68403505 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
68403534 ATATACAGGTGATTTGGGCCTAAAGGGGCC
1 ATATAAATGTGA-TTGGGCCT-AATGGGCC
* * *
68403564 ATATGAATATGATTGGGCATAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
68403592 A
1 A
68403593 GATATAGGTA
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
28 19 0.26
29 40 0.54
30 15 0.20
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:68403580 original size:58 final size:58
Alignment explanation
Indices: 68403490--68403601 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
68403480 TGAATGTGAC
* * *
68403490 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCATAATGGGCCAGATACAGGTGATT
* * *
68403548 TGGGCCTAAAGGGGCCATATGAATATGA-TTGGGCATAATGGGCCAGATATAGGT
1 TGGGCCT-AACGGGCCATATAAATATGATTTGGGCATAATGGGCCAGATACAGGT
68403602 ATGTGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 30 0.64
59 17 0.36
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTTGGGCATAATGGGCCAGATACAGGTGATT
Found at i:68405069 original size:43 final size:43
Alignment explanation
Indices: 68405005--68405179 Score: 160
Period size: 43 Copynumber: 4.1 Consensus size: 43
68404995 TCACATAAAG
* * * *
68405005 CTCATA-CAATGCC-ATATCCCAGATATGGTCTTACATGTTAT
1 CTCATATCGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
* ***
68405046 CTCATATCGATGCCAAGGTCCCAGACATGGTCTTACACAAAAT
1 CTCATATCGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
* * *
68405089 CAT-ATAACGATGCCAATGTCCTAGACATGGTCTTACAGGTAAT
1 C-TCATATCGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
* * * * *
68405132 CACA-ATACAATGACAATGTCCCAGGCATGGTCTTACGTGTAAT
1 CTCATAT-CGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
68405175 CTCAT
1 CTCAT
68405180 CTCGGTAATC
Statistics
Matches: 105, Mismatches: 23, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
41 6 0.06
42 7 0.07
43 91 0.87
44 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
CTCATATCGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
Found at i:68410577 original size:54 final size:54
Alignment explanation
Indices: 68410492--68410741 Score: 184
Period size: 54 Copynumber: 4.6 Consensus size: 54
68410482 ATTACCGTTT
* ***** * *
68410492 TACCATTGATTTACAAAATTACTGTTTTACCCCTGATTTACAAAATTACTAAAA
1 TACCATTGGTTTACAAAATTACCAAAATACCCCTGATTTGCAAAATTACCAAAA
* * * *
68410546 TACCTTTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
1 TACCATTGGTTTACAAAATTACCAAAATACCCCTGATTTGCAAAATTACCAAAA
* *** * * *
68410600 TACCACTGGTTTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAA
1 TACCATTGGTTTACAAAATTACCAAAATACCCCT-GATTTGCAAAATTACCAAAA
* * ** *
68410654 TACCCTTGATTTACAAAATTA-CAGAAATACCATTGACTTT-CTAAAAATTA-TAGAAA
1 TACCATTGGTTTACAAAATTACCA-AAATACCCCTGA-TTTGC--AAAATTACCA-AAA
**
68410710 TACCATTGGTTTACAAAATTACTGAAATACCC
1 TACCATTGGTTTACAAAATTACCAAAATACCC
68410742 TTGGTTCGTA
Statistics
Matches: 150, Mismatches: 38, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
53 5 0.03
54 103 0.69
55 6 0.04
56 36 0.24
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.32
Consensus pattern (54 bp):
TACCATTGGTTTACAAAATTACCAAAATACCCCTGATTTGCAAAATTACCAAAA
Found at i:68410745 original size:27 final size:27
Alignment explanation
Indices: 68410452--68410747 Score: 159
Period size: 27 Copynumber: 10.9 Consensus size: 27
68410442 CTCAATTTGT
*
68410452 AAAATTACC-AAAGTA-CCTTGGATTTAT
1 AAAATTACCGAAA-TACCCTTGG-TTTAC
* *** * *
68410479 AGAATTACCGTTTTACCATTGATTTAC
1 AAAATTACCGAAATACCCTTGGTTTAC
* *** * *
68410506 AAAATTACTGTTTTACCCCTGATTTAC
1 AAAATTACCGAAATACCCTTGGTTTAC
** * *
68410533 AAAATTACTAAAATACCTTTAGTTTAC
1 AAAATTACCGAAATACCCTTGGTTTAC
* * **
68410560 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCGAAATACCCTTGGTTTAC
* **
68410587 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACCGAAATACC-CTTGGTTTAC
* *** **
68410614 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCGAAATACCCTTGGTTTAC
* *
68410641 AAAATTACCAAAATACCCTTGATTTAC
1 AAAATTACCGAAATACCCTTGGTTTAC
* * *
68410668 AAAATTACAGAAATACCATTGACTTT-C
1 AAAATTACCGAAATACCCTTG-GTTTAC
** *
68410695 TAAAAATTATAGAAATACCATTGGTTTAC
1 --AAAATTACCGAAATACCCTTGGTTTAC
*
68410724 AAAATTACTGAAATACCCTTGGTT
1 AAAATTACCGAAATACCCTTGGTT
68410748 CGTAGATTTA
Statistics
Matches: 216, Mismatches: 45, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.00
27 183 0.85
28 11 0.05
29 21 0.10
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGGTTTAC
Found at i:68410840 original size:27 final size:27
Alignment explanation
Indices: 68410789--68410866 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
68410779 AAATGACTAA
* *
68410789 AATACCCCTAATAGGGAAAAG-GACCGT
1 AATACCCCT-GTAGGGTAAAGTGACCGT
68410816 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAGTGACCGT
* *
68410843 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAGTGAC
68410867 GAATATGCCC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
26 10 0.23
27 33 0.75
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAGTGACCGT
Found at i:68411705 original size:25 final size:25
Alignment explanation
Indices: 68411667--68411728 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
68411657 AGGAAGTGCT
* * *
68411667 AAAAGGGCTATGCCCTAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
68411692 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
68411717 AAAAGGGATTTG
1 AAAAGGGCTTTG
68411729 TTCCAGTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:68412004 original size:31 final size:31
Alignment explanation
Indices: 68411955--68412037 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
68411945 CGCTTACAGT
68411955 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
68411985 AAGGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
68412016 AAATGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
68412038 TCGAGACTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 15 0.31
31 34 0.69
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:68414345 original size:27 final size:27
Alignment explanation
Indices: 68414294--68414560 Score: 153
Period size: 27 Copynumber: 9.9 Consensus size: 27
68414284 AATACTTTAG
* * **
68414294 TTTATCAAATTACTAAAATGTCCTCAA
1 TTTATAAAATTACCAAAATACCCTCAA
* * *
68414321 TTTGTAAAATTACCAAAGTACCCTCGA
1 TTTATAAAATTACCAAAATACCCTCAA
* * **** *
68414348 TTTACAGAATTACCGTTTTATCCTCAA
1 TTTATAAAATTACCAAAATACCCTCAA
* * ****
68414375 TTTACAGAATTACCGTTTTACCCTCAA
1 TTTATAAAATTACCAAAATACCCTCAA
* * * ***
68414402 TTTACAAAATGACTAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCTCAA
*
68414429 TTTATAAAATTACCAAAATACCC-CTAG
1 TTTATAAAATTACCAAAATACCCTC-AA
* **
68414456 TTTGTAAAATTACCAAAATACCACT-GG
1 TTTATAAAATTACCAAAATACC-CTCAA
* * *
68414483 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTATAAAATTACCAAAATACCCTCAA
* **
68414510 TTTGTAAAATTACCAAAATACCCTTGA
1 TTTATAAAATTACCAAAATACCCTCAA
*
68414537 TTTACAAAATTA-CAGAAATACCCT
1 TTTATAAAATTACCA-AAATACCCT
68414561 TAACTTTCTA
Statistics
Matches: 191, Mismatches: 44, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
26 4 0.02
27 186 0.97
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.33
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCTCAA
Found at i:68414440 original size:54 final size:54
Alignment explanation
Indices: 68414393--68414644 Score: 231
Period size: 54 Copynumber: 4.6 Consensus size: 54
68414383 ATTACCGTTT
** * * *
68414393 TACCCTCAATTTACAAAATGACTAAAATACCCTTGGTTTATAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCGAAA
* * *
68414447 TACCC-CTAGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACC-CTTGGTTTATAAAATTACCGAAA
* * *
68414501 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCGAAA
* * * * * *
68414555 TACCCTTAACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCAA-TTTGT-AAAATTACCA-AAATACCCTTGGTTTATAAAATTACCGAAA
*** * * *
68414611 TACCCTTGGTTTGTACATTTACCAAAACACCCTT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTT
68414645 ATAGGATGAA
Statistics
Matches: 162, Mismatches: 28, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
53 2 0.01
54 107 0.66
55 12 0.07
56 41 0.25
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCGAAA
Found at i:68414619 original size:27 final size:27
Alignment explanation
Indices: 68414402--68414622 Score: 153
Period size: 27 Copynumber: 8.1 Consensus size: 27
68414392 TTACCCTCAA
* *
68414402 TTTACAAAATGACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTGG
* * *
68414429 TTTATAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCCTTGG
**
68414456 TTTGTAAAATTACCAAAATACCAC-TGG
1 TTTACAAAATTACCAAAATACC-CTTGG
*** * ***
68414483 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACCAAAATACCCTTGG
** *
68414510 TTTGTAAAATTACCAAAATACCCTTGA
1 TTTACAAAATTACCAAAATACCCTTGG
**
68414537 TTTACAAAATTA-CAGAAATACCCTTAAC
1 TTTACAAAATTACCA-AAATACCCTT-GG
* *
68414565 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACCA-AAATACCCTTGG
**
68414593 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTGG
68414620 TTT
1 TTT
68414623 GTACATTTAC
Statistics
Matches: 160, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.02
27 130 0.81
28 8 0.05
29 19 0.12
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTTGG
Found at i:68414624 original size:110 final size:108
Alignment explanation
Indices: 68414375--68414644 Score: 265
Period size: 108 Copynumber: 2.5 Consensus size: 108
68414365 TTATCCTCAA
* *** ** * * * *
68414375 TTTACAGAATTACCGTTTTACCCTCAATTTACAAAATGACTAAAATACCCTTGGTTTATAAAATT
1 TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATT
* *
68414440 ACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGG
66 ACCAAAATACCCCTACTTTCTAAAATTACCAAAATACCACTGG
***
68414483 TTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATT
1 TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATT
* * *
68414548 A-CAGAAATACCCTTAACTTTCTAAAAATTA-TAGAAATACCATTGG
66 ACCA-AAATACCCCT-ACTTTCT-AAAATTACCA-AAATACCACTGG
* *** * * *
68414593 TTTACAAAATTACTGAAATACCCTTGGTTTGTACATTTACCAAAACACCCTT
1 TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTT
68414645 ATAGGATGAA
Statistics
Matches: 130, Mismatches: 28, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
107 2 0.02
108 62 0.48
109 6 0.05
110 60 0.46
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (108 bp):
TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATT
ACCAAAATACCCCTACTTTCTAAAATTACCAAAATACCACTGG
Found at i:68414740 original size:27 final size:27
Alignment explanation
Indices: 68414663--68414740 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
68414653 AAATGACTAA
* * *
68414663 AATACCCCT-AATAGGTAAAAAGATCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
68414690 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
68414717 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
68414741 GAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.02
27 38 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:68415585 original size:25 final size:25
Alignment explanation
Indices: 68415547--68415613 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
68415537 AGGAAGTGCT
* * *
68415547 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
68415572 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
68415597 AAAAGGGCTTTGCCCCA
1 AAAAGGGCTTTGCCCCA
68415614 CTTATTAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:68415618 original size:24 final size:25
Alignment explanation
Indices: 68415547--68415623 Score: 84
Period size: 25 Copynumber: 3.1 Consensus size: 25
68415537 AGGAAGTGCT
* * * * *
68415547 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGCTTATCA
*
68415572 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGCTTATCA
*
68415597 AAAAGGGCTTTGCCCCA-CTTATTA
1 AAAAGGGCTTTGCCCCAGCTTATCA
68415621 AAA
1 AAA
68415624 GAGGCTAGGC
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 8 0.17
25 38 0.83
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGCTTATCA
Found at i:68415629 original size:24 final size:25
Alignment explanation
Indices: 68415572--68415629 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
68415562 TAGTTTACCG
*
68415572 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAGCTTATC
*
68415596 AAAA-AGGGCTTTGCCCCA-CTTATT
1 AAAAGA-GGCTTTGCCCCAGCTTATC
68415620 AAAAGAGGCT
1 AAAAGAGGCT
68415630 AGGCCTCCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
24 16 0.55
25 13 0.45
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGCTTATC
Found at i:68415884 original size:31 final size:31
Alignment explanation
Indices: 68415837--68415917 Score: 139
Period size: 31 Copynumber: 2.7 Consensus size: 31
68415827 CTTACAATAT
68415837 AGGCTTCGG-CCAGTGATATGATTTATGAAA
1 AGGCTTCGGCCCAGTGATATGATTTATGAAA
68415867 AGGCTTCGGCCCAGTGATATGATTTATGAAA
1 AGGCTTCGGCCCAGTGATATGATTTATGAAA
*
68415898 AGGCTTCGGCTCAGT-ATATG
1 AGGCTTCGGCCCAGTGATATG
68415918 TTGAGACTGA
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 14 0.29
31 35 0.71
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (31 bp):
AGGCTTCGGCCCAGTGATATGATTTATGAAA
Found at i:68418921 original size:9 final size:9
Alignment explanation
Indices: 68418893--68418945 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
68418883 ATAAACAGGG
68418893 TATGTATGA
1 TATGTATGA
*
68418902 TATGCACATGA
1 TATG--TATGA
*
68418913 CATGTATGA
1 TATGTATGA
68418922 TATGTACATGA
1 TATGT--ATGA
68418933 TATGTATGA
1 TATGTATGA
68418942 TATG
1 TATG
68418946 CACGTGATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (9 bp):
TATGTATGA
Found at i:68418934 original size:11 final size:11
Alignment explanation
Indices: 68418898--68418938 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
68418888 CAGGGTATGT
*
68418898 ATGATATGCAC
1 ATGATATGTAC
*
68418909 ATGACATGT--
1 ATGATATGTAC
68418918 ATGATATGTAC
1 ATGATATGTAC
68418929 ATGATATGTA
1 ATGATATGTA
68418939 TGATATGCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 8 0.32
11 17 0.68
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGTAC
Found at i:68418953 original size:20 final size:20
Alignment explanation
Indices: 68418893--68418953 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
68418883 ATAAACAGGG
68418893 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
* *
68418913 CATGTATGATATGTACATGA
1 TATGTATGATATGCACATGA
*
68418933 TATGTATGATATGCACGTGA
1 TATGTATGATATGCACATGA
68418953 T
1 T
68418954 GTAATCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:68419034 original size:23 final size:23
Alignment explanation
Indices: 68419004--68419076 Score: 110
Period size: 23 Copynumber: 3.1 Consensus size: 23
68418994 AGGAAGTGAA
*
68419004 AAAGGGCTTGTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
68419027 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
68419050 AAAAGGGCTTTTGCCCTAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
68419074 AAA
1 AAA
68419077 AGAGGCTAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
23 25 0.54
24 21 0.46
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:68419059 original size:24 final size:24
Alignment explanation
Indices: 68419003--68419083 Score: 119
Period size: 24 Copynumber: 3.4 Consensus size: 24
68418993 GAGGAAGTGA
*
68419003 AAAAGGGCTTGTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68419027 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
68419050 AAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68419074 AAAAGAGGCT
1 AAAAG-GGCT
68419084 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 22 0.42
24 26 0.50
25 4 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:68419326 original size:31 final size:31
Alignment explanation
Indices: 68419291--68419354 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
68419281 CTTTCACAGT
68419291 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
**
68419322 AAAGGCTTCGGCCCAGTGTTATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
68419353 AA
1 AA
68419355 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATTTGA
Found at i:68421213 original size:43 final size:42
Alignment explanation
Indices: 68421160--68421314 Score: 143
Period size: 43 Copynumber: 3.6 Consensus size: 42
68421150 ATGCCATATC
* *
68421160 CCAGATATGGTCTTACATGTTATCTCGTATCGATGCCAATGTT
1 CCAGACATGGTCTTACATGTAATCTC-TATCGATGCCAATGTT
* * * * *
68421203 CCAGACATGGTCTTACCA-GAAATCATATAACGATGCCGATGTC
1 CCAGACATGGTCTTA-CATGTAATC-TCTATCGATGCCAATGTT
* * * * *
68421246 CCAGACATGGTCTTACACGTAATCACAATACAATGACAATG-T
1 CCAGACATGGTCTTACATGTAATCTCTAT-CGATGCCAATGTT
68421288 CTCAGACATGGTCTTACATGTAATCTC
1 C-CAGACATGGTCTTACATGTAATCTC
68421315 ATCTCAACAA
Statistics
Matches: 89, Mismatches: 18, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
42 4 0.04
43 82 0.92
44 3 0.03
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (42 bp):
CCAGACATGGTCTTACATGTAATCTCTATCGATGCCAATGTT
Found at i:68422026 original size:56 final size:56
Alignment explanation
Indices: 68421961--68422066 Score: 194
Period size: 56 Copynumber: 1.9 Consensus size: 56
68421951 CATCAAAGAA
68421961 CACATAATCTCAACAATGGTAGCCATCAAAATCTTCAAGAATTTCAAAATCAGAGG
1 CACATAATCTCAACAATGGTAGCCATCAAAATCTTCAAGAATTTCAAAATCAGAGG
* *
68422017 CACATAATCTCAACAATGGTAGCCATCAAAATCTTTAAGAATTTCGAAAT
1 CACATAATCTCAACAATGGTAGCCATCAAAATCTTCAAGAATTTCAAAAT
68422067 TGGAGGTACG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.25
Consensus pattern (56 bp):
CACATAATCTCAACAATGGTAGCCATCAAAATCTTCAAGAATTTCAAAATCAGAGG
Found at i:68424918 original size:18 final size:20
Alignment explanation
Indices: 68424882--68424928 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
68424872 TTTTAAGTAT
68424882 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
68424902 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
68424921 ATGATATA
1 AT-ATATA
68424929 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:68425458 original size:50 final size:50
Alignment explanation
Indices: 68425283--68425508 Score: 197
Period size: 50 Copynumber: 4.5 Consensus size: 50
68425273 GTGAGTCAAG
* * ** ** *
68425283 TGTGTAGTACTAAGTGTA-GCTATTACGTGTACTGGATTAATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAGGCCGCA
* * * ** * ** *
68425332 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-CATTAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGA--TAGGCCGCA
* * * *
68425383 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCC-CG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGAT-AGGCCGCA
*
68425433 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGCCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAGGCCGCA
* *
68425483 TGTGTAGTACTGAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
68425509 TGCGACCCGT
Statistics
Matches: 144, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
49 26 0.18
50 77 0.53
51 39 0.27
52 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAGGCCGCA
Found at i:68430508 original size:18 final size:18
Alignment explanation
Indices: 68430482--68430518 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
68430472 CTTGGCCAAT
* *
68430482 TACAGTAATTGTAAACAG
1 TACAATAATAGTAAACAG
68430500 TACAATAATAGTAAACAG
1 TACAATAATAGTAAACAG
68430518 T
1 T
68430519 GCAGTAGCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.11, G:0.14, T:0.27
Consensus pattern (18 bp):
TACAATAATAGTAAACAG
Found at i:68430589 original size:23 final size:24
Alignment explanation
Indices: 68430549--68430593 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
68430539 CAAGTCCTAC
*
68430549 CCATCCAGCCTCTACACTCTATCT
1 CCATCCAACCTCTACACTCTATCT
68430573 CCATCCAACC-CTACACTCTAT
1 CCATCCAACCTCTACACTCTAT
68430594 GTGGGGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.24, C:0.47, G:0.02, T:0.27
Consensus pattern (24 bp):
CCATCCAACCTCTACACTCTATCT
Found at i:68430704 original size:52 final size:52
Alignment explanation
Indices: 68430625--68430727 Score: 152
Period size: 52 Copynumber: 2.0 Consensus size: 52
68430615 TCATCCCTAC
* * * *
68430625 ACTCCAGAATTAGCATTGGTTGCAGCACTAAACAGTATTCGTAGCAGAGCTT
1 ACTCCAAAATTAGCACTGGTTGCAGCACTAAACAATATTCGCAGCAGAGCTT
* *
68430677 ACTCCAAAATTAGCACTGGTTGTAGCACTAAACAATATTTGCAGCAGAGCT
1 ACTCCAAAATTAGCACTGGTTGCAGCACTAAACAATATTCGCAGCAGAGCT
68430728 GCCAGTAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (52 bp):
ACTCCAAAATTAGCACTGGTTGCAGCACTAAACAATATTCGCAGCAGAGCTT
Found at i:68430986 original size:27 final size:27
Alignment explanation
Indices: 68430938--68431233 Score: 199
Period size: 27 Copynumber: 11.0 Consensus size: 27
68430928 AGTCATCCTA
* * *
68430938 CACATAACGACAAAATAATCATTTTAC
1 CACATAAGGGCAAAATCATCATTTTAC
* * *
68430965 CTCGTAAGGGAAAAATCATCATTTTAC
1 CACATAAGGGCAAAATCATCATTTTAC
* * *
68430992 CACATAAGGGCAAAACCATCGTTTTAA
1 CACATAAGGGCAAAATCATCATTTTAC
*
68431019 CACATAAGGGCAAAA-CAGTCATTTTGC
1 CACATAAGGGCAAAATCA-TCATTTTAC
* * * *
68431046 CACATAAGGGCAAAA-CTGTTATATTAT
1 CACATAAGGGCAAAATC-ATCATTTTAC
* *
68431073 CACATAAGGGCAAAATCGTCATTTTAA
1 CACATAAGGGCAAAATCATCATTTTAC
** * *
68431100 CACATAAAAGCAAAA-CTGTCATTTTAT
1 CACATAAGGGCAAAATC-ATCATTTTAC
* ** ** *
68431127 CATATAA-GATAAAATTGTCATTTTAA
1 CACATAAGGGCAAAATCATCATTTTAC
* ** *
68431153 CATATAAGGGCAAAATTGTCATTTTAA
1 CACATAAGGGCAAAATCATCATTTTAC
* *
68431180 CACATAATGGCAAAA-CAATCATTTTTC
1 CACATAAGGGCAAAATC-ATCATTTTAC
* *
68431207 CACGTAAGGG-AAATATCGTCATTTTAC
1 CACATAAGGGCAAA-ATCATCATTTTAC
68431234 ATTACAGGGG
Statistics
Matches: 216, Mismatches: 44, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
26 26 0.12
27 188 0.87
28 2 0.01
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (27 bp):
CACATAAGGGCAAAATCATCATTTTAC
Found at i:68431033 original size:81 final size:81
Alignment explanation
Indices: 68430937--68431233 Score: 294
Period size: 81 Copynumber: 3.7 Consensus size: 81
68430927 CAGTCATCCT
* * * * * *
68430937 ACACATAACGACAAAATAATCATTTTACCTCGTAAGGGAAAAATCATCATTTTACCACATAAGGG
1 ACACATAAAGGCAAAACAATCATTTTACCACATAAGGGAAAAATCGTCATTTTACCACATAAGGG
* * *
68431002 CAAAACCATCGTTTTA
66 CAAAATCGTCATTTTA
* * * * * * *
68431018 ACACATAAGGGCAAAACAGTCATTTTGCCACATAAGGGCAAAA-CTGTTATATTATCACATAAGG
1 ACACATAAAGGCAAAACAATCATTTTACCACATAAGGGAAAAATC-GTCATTTTACCACATAAGG
68431082 GCAAAATCGTCATTTTA
65 GCAAAATCGTCATTTTA
* ** * * * * *
68431099 ACACATAAAAGCAAAACTGTCATTTTATCATATAA--GATAAAATTGTCATTTTAACATATAAGG
1 ACACATAAAGGCAAAACAATCATTTTACCACATAAGGGA-AAAATCGTCATTTTACCACATAAGG
*
68431162 GCAAAATTGTCATTTTA
65 GCAAAATCGTCATTTTA
* * * *
68431179 ACACATAATGGCAAAACAATCATTTTTCCACGTAAGGGAAATATCGTCATTTTAC
1 ACACATAAAGGCAAAACAATCATTTTACCACATAAGGGAAAAATCGTCATTTTAC
68431234 ATTACAGGGG
Statistics
Matches: 172, Mismatches: 39, Indels: 10
0.78 0.18 0.05
Matches are distributed among these distances:
79 1 0.01
80 63 0.37
81 106 0.62
82 2 0.01
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (81 bp):
ACACATAAAGGCAAAACAATCATTTTACCACATAAGGGAAAAATCGTCATTTTACCACATAAGGG
CAAAATCGTCATTTTA
Found at i:68431166 original size:53 final size:54
Alignment explanation
Indices: 68430976--68431194 Score: 219
Period size: 54 Copynumber: 4.1 Consensus size: 54
68430966 TCGTAAGGGA
* * ** * * *
68430976 AAAATCATCATTTTACCACATAAGGGCAAAACCATCGTTTTAACACATAAGGGC
1 AAAATCGTCATTTTAACACATAAGGGCAAAACTGTCATTTTATCACATAAGGAC
** * * *
68431030 AAAA-CAGTCATTTTGCCACATAAGGGCAAAACTGTTATATTATCACATAAGGGC
1 AAAATC-GTCATTTTAACACATAAGGGCAAAACTGTCATTTTATCACATAAGGAC
** * *
68431084 AAAATCGTCATTTTAACACATAAAAGCAAAACTGTCATTTTATCATATAA-GAT
1 AAAATCGTCATTTTAACACATAAGGGCAAAACTGTCATTTTATCACATAAGGAC
* * * *
68431137 AAAATTGTCATTTTAACATATAAGGGCAAAATTGTCATTTTAACACATAATGG-C
1 AAAATCGTCATTTTAACACATAAGGGCAAAACTGTCATTTTATCACATAA-GGAC
68431191 AAAA
1 AAAA
68431195 CAATCATTTT
Statistics
Matches: 136, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
53 45 0.33
54 89 0.65
55 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.28
Consensus pattern (54 bp):
AAAATCGTCATTTTAACACATAAGGGCAAAACTGTCATTTTATCACATAAGGAC
Found at i:68432780 original size:217 final size:217
Alignment explanation
Indices: 68432400--68432833 Score: 690
Period size: 217 Copynumber: 2.0 Consensus size: 217
68432390 ATAAAATACC
* ** *
68432400 CGAACGGTCTAAGTAGTAGTTGGCCTCAGACAAAAATGAAATCAATAACCAAGGGGTAGCTACCG
1 CGAACGGTCTAAGTAGTAATCAGCCTCAGACAAAAACGAAATCAATAACCAAGGGGTAGCTACCG
* *
68432465 AAATAGAGAGCACTTGCTAGTCTCAAAGCCGAATTTTGAGTGTTGGGAGATCACAAACAGCACCA
66 AAATAGAGAGCACTTGCTAGTCTCAAAGCAGAATTTTGAGTGTTGGGAAATCACAAACAGCACCA
* *
68432530 CTCTCCACTCCTCTTCAAATCCAAAAGCATTGAGTGCATACAATTCCCATTCGGCACTAACTCTT
131 CTCTCCACTCCTCTCCAAATCCAAAAGCATTGAGTGCATACAATTCCCATTCGGCACCAACTCTT
68432595 TTCCAACCACAAATCCCCACGA
196 TTCCAACCACAAATCCCCACGA
* **
68432617 CGAATGGTCTAAGTAGTAATCAGCCTCAGACAAAAACGAAATCAATAACCAAGGGGTAGCTATTG
1 CGAACGGTCTAAGTAGTAATCAGCCTCAGACAAAAACGAAATCAATAACCAAGGGGTAGCTACCG
* *
68432682 AAATAGA-AGCACTTGCTAGTCTCAAAGTAGAATTTTGAGTGTTGGGAAATCACAAATAGCACCA
66 AAATAGAGAGCACTTGCTAGTCTCAAAGCAGAATTTTGAGTGTTGGGAAATCACAAACAGCACCA
* * * * *
68432746 CTCTCTACTTCTCTCCAAATCCTGAAAGCATTGAGTGCCTACAATTTCCATTCGGCACCAACTCT
131 CTCTCCACTCCTCTCCAAATCC-AAAAGCATTGAGTGCATACAATTCCCATTCGGCACCAACTCT
68432811 TTTCCAACCACAAATCCCCACGA
195 TTTCCAACCACAAATCCCCACGA
68432834 TTTTCTTCTC
Statistics
Matches: 198, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
216 72 0.36
217 126 0.64
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (217 bp):
CGAACGGTCTAAGTAGTAATCAGCCTCAGACAAAAACGAAATCAATAACCAAGGGGTAGCTACCG
AAATAGAGAGCACTTGCTAGTCTCAAAGCAGAATTTTGAGTGTTGGGAAATCACAAACAGCACCA
CTCTCCACTCCTCTCCAAATCCAAAAGCATTGAGTGCATACAATTCCCATTCGGCACCAACTCTT
TTCCAACCACAAATCCCCACGA
Found at i:68435175 original size:81 final size:81
Alignment explanation
Indices: 68435047--68435358 Score: 351
Period size: 81 Copynumber: 3.9 Consensus size: 81
68435037 GTCATCCTAC
* * * * * *
68435047 CACATAATGGCAAAATAGTCATTTTACCTCATAAGGGAAAAATTATCATTTTACCACATAAGGGA
1 CACATAATGGCAAAACAATCATTTTAACACATAAGGGCAAAACTATCATTTTACCACATAAGGGA
68435112 AAAATCGTCATTTTAA
66 AAAATCGTCATTTTAA
* ** * * * *
68435128 CACATAAGGGCAAAACAATCATTTTGCCACATAAGGTCAAAACTATCATTTTATCACACAAGGGC
1 CACATAATGGCAAAACAATCATTTTAACACATAAGGGCAAAACTATCATTTTACCACATAAGGGA
*
68435193 AAAATCATCATTTTAA
66 AAAATCGTCATTTTAA
* * * *
68435209 CACATAAAGGCAAAACAATCATTTTGACACATAAGGGCAAAA-TAGCCATTTTGA-CATATAAGG
1 CACATAATGGCAAAACAATCATTTTAACACATAAGGGCAAAACTA-TCATTTT-ACCACATAAGG
*
68435272 GAAAAATTGTCATTTTAA
64 GAAAAATCGTCATTTTAA
* * * * *
68435290 CACATAATGGCAAAATC-GTCATTTTAACATATAAGGTCAAAACAATCATTTTTCCACATAAGGG
1 CACATAATGGCAAAA-CAATCATTTTAACACATAAGGGCAAAACTATCATTTTACCACATAAGGG
*
68435354 CAAAA
65 AAAAA
68435359 CCATCAATTT
Statistics
Matches: 195, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
80 2 0.01
81 190 0.97
82 3 0.02
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (81 bp):
CACATAATGGCAAAACAATCATTTTAACACATAAGGGCAAAACTATCATTTTACCACATAAGGGA
AAAATCGTCATTTTAA
Found at i:68435359 original size:27 final size:27
Alignment explanation
Indices: 68435047--68435369 Score: 274
Period size: 27 Copynumber: 12.0 Consensus size: 27
68435037 GTCATCCTAC
* * * *
68435047 CACATAATGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAA
* * ** *
68435074 CTCATAAGGGAAAAATTATCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAA
* *
68435101 CACATAAGGGAAAAATC-GTCATTTTAA
1 CACATAAGGGCAAAA-CAATCATTTTAA
**
68435128 CACATAAGGGCAAAACAATCATTTTGC
1 CACATAAGGGCAAAACAATCATTTTAA
* * *
68435155 CACATAAGGTCAAAACTATCATTTTAT
1 CACATAAGGGCAAAACAATCATTTTAA
*
68435182 CACACAAGGGCAAAATC-ATCATTTTAA
1 CACATAAGGGCAAAA-CAATCATTTTAA
* *
68435209 CACATAAAGGCAAAACAATCATTTTGA
1 CACATAAGGGCAAAACAATCATTTTAA
* ** *
68435236 CACATAAGGGCAAAATAGCCATTTTGA
1 CACATAAGGGCAAAACAATCATTTTAA
* * ***
68435263 CATATAAGGGAAAAATTGTCATTTTAA
1 CACATAAGGGCAAAACAATCATTTTAA
* *
68435290 CACATAATGGCAAAATC-GTCATTTTAA
1 CACATAAGGGCAAAA-CAATCATTTTAA
* * **
68435317 CATATAAGGTCAAAACAATCATTTTTC
1 CACATAAGGGCAAAACAATCATTTTAA
* *
68435344 CACATAAGGGCAAAACCATCAATTTA
1 CACATAAGGGCAAAACAATCATTTTA
68435370 CCTTATAGGG
Statistics
Matches: 243, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
26 3 0.01
27 239 0.98
28 1 0.00
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (27 bp):
CACATAAGGGCAAAACAATCATTTTAA
Found at i:68435419 original size:27 final size:26
Alignment explanation
Indices: 68435360--68435422 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
68435350 AGGGCAAAAC
* *
68435360 CATCAATTTACCTTATAGGGGTATTA
1 CATCATTTTACCCTATAGGGGTATTA
* *
68435386 CAGTCATTTTACCCTATGGGGGTATTT
1 CA-TCATTTTACCCTATAGGGGTATTA
68435413 CGATCATTTT
1 C-ATCATTTT
68435423 CAAGTAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
26 2 0.06
27 28 0.90
28 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (26 bp):
CATCATTTTACCCTATAGGGGTATTA
Found at i:68437798 original size:17 final size:17
Alignment explanation
Indices: 68437748--68437805 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 17
68437738 AGGTGAGAAG
68437748 TAAAAGTTTAGGGGGAAAA
1 TAAAAGTTTA-GGGG-AAA
*
68437767 TAAAAAGTTTTGGGG-AA
1 T-AAAAGTTTAGGGGAAA
68437784 TAAAAGTTTGAGGGGAAA
1 TAAAAGTTT-AGGGGAAA
68437802 TAAA
1 TAAA
68437806 TAAGGGGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 8 0.24
17 7 0.21
18 6 0.18
19 5 0.15
20 8 0.24
ACGTcount: A:0.47, C:0.00, G:0.29, T:0.24
Consensus pattern (17 bp):
TAAAAGTTTAGGGGAAA
Found at i:68438179 original size:9 final size:9
Alignment explanation
Indices: 68438161--68438197 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
68438151 TATAGTTTGA
*
68438161 TATTCAAAT
1 TATTCGAAT
68438170 TATTCGAAT
1 TATTCGAAT
*
68438179 TATTCGAGT
1 TATTCGAAT
68438188 TATTCGAAT
1 TATTCGAAT
68438197 T
1 T
68438198 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:68438273 original size:18 final size:18
Alignment explanation
Indices: 68438247--68438281 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
68438237 AATCGAGTTG
*
68438247 ACTCGAATAACTCGATTA
1 ACTCAAATAACTCGATTA
68438265 ACTCAAATAACTCGATT
1 ACTCAAATAACTCGATT
68438282 CGTTTAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (18 bp):
ACTCAAATAACTCGATTA
Found at i:68439231 original size:22 final size:21
Alignment explanation
Indices: 68439191--68439231 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
68439181 AAACATTTAT
*
68439191 AATTCATACAATCACATAACA
1 AATTCATACAAGCACATAACA
*
68439212 AATTCAATACAAGCATATAA
1 AATTC-ATACAAGCACATAA
68439232 TGTAACACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.54, C:0.20, G:0.02, T:0.24
Consensus pattern (21 bp):
AATTCATACAAGCACATAACA
Found at i:68445237 original size:20 final size:20
Alignment explanation
Indices: 68445212--68445261 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
68445202 AGGAACTCAA
68445212 AAAAATTTTCACAAAATTTC
1 AAAAATTTTCACAAAATTTC
68445232 AAAAATTTTCACAAAATTTC
1 AAAAATTTTCACAAAATTTC
68445252 AAAAATTTTC
1 AAAAATTTTC
68445262 TTTAGTACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAAATTTTCACAAAATTTC
Found at i:68445241 original size:10 final size:10
Alignment explanation
Indices: 68445212--68445261 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
68445202 AGGAACTCAA
68445212 AAAAATTTTC
1 AAAAATTTTC
68445222 ACAAAA-TTTC
1 A-AAAATTTTC
68445232 AAAAATTTTC
1 AAAAATTTTC
68445242 ACAAAA-TTTC
1 A-AAAATTTTC
68445252 AAAAATTTTC
1 AAAAATTTTC
68445262 TTTAGTACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
9 8 0.22
10 20 0.56
11 8 0.22
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAAATTTTC
Found at i:68454354 original size:16 final size:16
Alignment explanation
Indices: 68454333--68454378 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
68454323 TCAGCAAAAG
*
68454333 CCGAAATGCAGAAATA
1 CCGAAAAGCAGAAATA
* *
68454349 CCGAAAAGCTGAAATG
1 CCGAAAAGCAGAAATA
*
68454365 CCGAAAAGCTGAAA
1 CCGAAAAGCAGAAA
68454379 GTTTGGCTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.48, C:0.20, G:0.22, T:0.11
Consensus pattern (16 bp):
CCGAAAAGCAGAAATA
Found at i:68454644 original size:29 final size:28
Alignment explanation
Indices: 68454589--68454704 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
68454579 GTGAGCATGA
* * *
68454589 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
68454617 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
68454646 ATATACAGGTGATTTGGGCCTAAAGGGGCC
1 ATATAAATGTGA-TTGGGCCT-AATGGGCC
* * *
68454676 ATATGAATATGATTGGGCATAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
68454704 A
1 A
68454705 GATATAGGTA
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
28 19 0.26
29 40 0.54
30 15 0.20
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:68454692 original size:58 final size:58
Alignment explanation
Indices: 68454602--68454713 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
68454592 TGAATGTGAC
* * *
68454602 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCATAATGGGCCAGATACAGGTGATT
* * *
68454660 TGGGCCTAAAGGGGCCATATGAATATGA-TTGGGCATAATGGGCCAGATATAGGT
1 TGGGCCT-AACGGGCCATATAAATATGATTTGGGCATAATGGGCCAGATACAGGT
68454714 ATGTGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 30 0.64
59 17 0.36
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTTGGGCATAATGGGCCAGATACAGGTGATT
Found at i:68456181 original size:43 final size:43
Alignment explanation
Indices: 68456117--68456291 Score: 160
Period size: 43 Copynumber: 4.1 Consensus size: 43
68456107 TCACATAAAG
* * * *
68456117 CTCATA-CAATGCC-ATATCCCAGATATGGTCTTACATGTTAT
1 CTCATATCGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
* ***
68456158 CTCATATCGATGCCAAGGTCCCAGACATGGTCTTACACAAAAT
1 CTCATATCGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
* * *
68456201 CAT-ATAACGATGCCAATGTCCTAGACATGGTCTTACAGGTAAT
1 C-TCATATCGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
* * * * *
68456244 CACA-ATACAATGACAATGTCCCAGGCATGGTCTTACGTGTAAT
1 CTCATAT-CGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
68456287 CTCAT
1 CTCAT
68456292 CTCGGTAATC
Statistics
Matches: 105, Mismatches: 23, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
41 6 0.06
42 7 0.07
43 91 0.87
44 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
CTCATATCGATGCCAATGTCCCAGACATGGTCTTACATGTAAT
Found at i:68461685 original size:54 final size:54
Alignment explanation
Indices: 68461627--68461838 Score: 180
Period size: 54 Copynumber: 3.9 Consensus size: 54
68461617 ATTACTGTTT
* * * *
68461627 TACCCCTGATTTACAAAATTACTAAAATACCTTTAGTTTACAAAATTACCAAAA
1 TACCCCTGATTTGCAAAATTACCAAAATACCATTGGTTTACAAAATTACCAAAA
* * * *** *
68461681 TACCCCTGGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCCTGATTTGCAAAATTACCAAAATACCATTGGTTTACAAAATTACCAAAA
* * * *
68461735 TA-CCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTA-CAGAAA
1 TACCCCT-GATTTGCAAAATTACCAAAATACCATTGGTTTACAAAATTACCA-AAA
** *
68461789 TACCATTGACTTT-CTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTA
1 TACCCCTGA-TTTGC--AAAATTACCA-AAATACCATTGGTTTACAAAATTA
68461839 ATGAAATACC
Statistics
Matches: 124, Mismatches: 27, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
53 5 0.04
54 84 0.68
55 6 0.05
56 29 0.23
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.32
Consensus pattern (54 bp):
TACCCCTGATTTGCAAAATTACCAAAATACCATTGGTTTACAAAATTACCAAAA
Found at i:68461685 original size:81 final size:81
Alignment explanation
Indices: 68461600--68461793 Score: 183
Period size: 81 Copynumber: 2.4 Consensus size: 81
68461590 ATTACCGTTT
***** * * * * *
68461600 TACCCTTGATTTACAAAATTACTGTTTTACCCCTGATTTACAAAATTACTAAAATACCTTTAGTT
1 TACCCTTGATTTACAAAATTACCAAAATACCACTGATTTACAAAATTACCAAAATACCCTCAATT
68461665 TACAAAATTACCAAAA
66 TACAAAATTACCAAAA
* * ** * *** *
68461681 TACCCCTGGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATT
1 TACCCTTGATTTACAAAATTACCAAAATACCACTGATTTACAAAATTACCAAAATACCCTCAATT
**
68461746 TGTAAAATTACCAAAA
66 TACAAAATTACCAAAA
68461762 TACCCTTGATTTACAAAATTA-CAGAAATACCA
1 TACCCTTGATTTACAAAATTACCA-AAATACCA
68461794 TTGACTTTCT
Statistics
Matches: 87, Mismatches: 25, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
80 2 0.02
81 85 0.98
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32
Consensus pattern (81 bp):
TACCCTTGATTTACAAAATTACCAAAATACCACTGATTTACAAAATTACCAAAATACCCTCAATT
TACAAAATTACCAAAA
Found at i:68461853 original size:27 final size:27
Alignment explanation
Indices: 68461560--68461855 Score: 159
Period size: 27 Copynumber: 10.9 Consensus size: 27
68461550 CTCAATTTGT
*
68461560 AAAATTACC-AAAGTA-CCTTGGATTTAT
1 AAAATTACCGAAA-TACCCTTGG-TTTAC
* *** *
68461587 AGAATTACCGTTTTACCCTTGATTTAC
1 AAAATTACCGAAATACCCTTGGTTTAC
* *** * *
68461614 AAAATTACTGTTTTACCCCTGATTTAC
1 AAAATTACCGAAATACCCTTGGTTTAC
** * *
68461641 AAAATTACTAAAATACCTTTAGTTTAC
1 AAAATTACCGAAATACCCTTGGTTTAC
* * **
68461668 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCGAAATACCCTTGGTTTAC
* **
68461695 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACCGAAATACC-CTTGGTTTAC
* *** **
68461722 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCGAAATACCCTTGGTTTAC
* *
68461749 AAAATTACCAAAATACCCTTGATTTAC
1 AAAATTACCGAAATACCCTTGGTTTAC
* * *
68461776 AAAATTACAGAAATACCATTGACTTT-C
1 AAAATTACCGAAATACCCTTG-GTTTAC
** *
68461803 TAAAAATTATAGAAATACCATTGGTTTAC
1 --AAAATTACCGAAATACCCTTGGTTTAC
**
68461832 AAAATTAATGAAATACCCTTGGTT
1 AAAATTACCGAAATACCCTTGGTT
68461856 CGTAGATTTA
Statistics
Matches: 218, Mismatches: 43, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
26 1 0.00
27 184 0.84
28 12 0.06
29 21 0.10
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGGTTTAC
Found at i:68461929 original size:26 final size:28
Alignment explanation
Indices: 68461897--68461958 Score: 76
Period size: 25 Copynumber: 2.3 Consensus size: 28
68461887 AAATGACTAA
68461897 AATACCCCTAATAGGGAAAAG-GACCGT
1 AATACCCCTAATAGGGAAAAGTGACCGT
** *
68461924 AA-A-CCCTTGTAGGGTAAAGTGACCGT
1 AATACCCCTAATAGGGAAAAGTGACCGT
68461950 AATACCCCT
1 AATACCCCT
68461959 GTATGGTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 13 0.45
26 9 0.31
27 3 0.10
28 4 0.14
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.19
Consensus pattern (28 bp):
AATACCCCTAATAGGGAAAAGTGACCGT
Found at i:68461936 original size:25 final size:27
Alignment explanation
Indices: 68461897--68461961 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 27
68461887 AAATGACTAA
*
68461897 AATACCCCTAATAGGGAAAAG-GACCGT
1 AATACCCCT-GTAGGGAAAAGTGACCGT
* *
68461924 AA-ACCCTTGTAGGGTAAAGTGACCGT
1 AATACCCCTGTAGGGAAAAGTGACCGT
68461950 AATACCCCTGTA
1 AATACCCCTGTA
68461962 TGGTAAAATG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 9 0.28
26 13 0.41
27 10 0.31
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (27 bp):
AATACCCCTGTAGGGAAAAGTGACCGT
Found at i:68461966 original size:27 final size:26
Alignment explanation
Indices: 68461908--68461973 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
68461898 ATACCCCTAA
* *
68461908 TAGGGAAAAG-GACCGTAAACCCTTG
1 TAGGGTAAAGTGACCGTAAACCCCTG
68461933 TAGGGTAAAGTGACCGTAATACCCCTG
1 TAGGGTAAAGTGACCGTAA-ACCCCTG
* *
68461960 TATGGTAAAATGAC
1 TAGGGTAAAGTGAC
68461974 GAATATGCCC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 9 0.26
26 8 0.23
27 18 0.51
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (26 bp):
TAGGGTAAAGTGACCGTAAACCCCTG
Found at i:68462810 original size:25 final size:25
Alignment explanation
Indices: 68462772--68462833 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
68462762 AGGAAGTGCT
* * *
68462772 AAAAGGGCTATGCCCTAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
68462797 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
68462822 AAAAGGGATTTG
1 AAAAGGGCTTTG
68462834 TTCCAGTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:68463105 original size:30 final size:31
Alignment explanation
Indices: 68463058--68463139 Score: 134
Period size: 30 Copynumber: 2.7 Consensus size: 31
68463048 CGCTTACAGT
68463058 AAAGGCTTCGG-CCAGTGATATGATTTATG-
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
68463087 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
68463118 AAATGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
68463140 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
29 11 0.22
30 23 0.46
31 16 0.32
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:68465435 original size:27 final size:27
Alignment explanation
Indices: 68465391--68465647 Score: 121
Period size: 27 Copynumber: 9.6 Consensus size: 27
68465381 TTAGTTTATC
* ** *
68465391 AATTACTAAAATGTCCTCAATTTGTAA
1 AATTACCAAAATACCCTCAATTTATAA
* * * *
68465418 AATTACCAAAGTACCCTCGATTTACAG
1 AATTACCAAAATACCCTCAATTTATAA
**** * * *
68465445 AATTACCGTTTTATCCTC-ATTTACAG
1 AATTACCAAAATACCCTCAATTTATAA
**** *
68465471 AATTACCGTTTTACCCTCAATTTACAA
1 AATTACCAAAATACCCTCAATTTATAA
* * ***
68465498 AATGACTAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTCAATTTATAA
** *
68465525 AATTACCAAAATACCC-CTTGTTTGT-A
1 AATTACCAAAATACCCTC-AATTTATAA
** * *
68465551 AATTACCAAAATACCACT-GGTTTGTGA
1 AATTACCAAAATACC-CTCAATTTATAA
* *
68465578 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTCAATTTATAA
* *
68465605 AATTACCAAAATACCCT-GATTTACAA
1 AATTACCAAAATACCCTCAATTTATAA
68465631 AATTA-CAGAAATACCCT
1 AATTACCA-AAATACCCT
68465648 TAACTTTCTA
Statistics
Matches: 184, Mismatches: 39, Indels: 15
0.77 0.16 0.06
Matches are distributed among these distances:
25 2 0.01
26 69 0.38
27 113 0.61
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTATAA
Found at i:68465473 original size:26 final size:27
Alignment explanation
Indices: 68465429--68465496 Score: 111
Period size: 26 Copynumber: 2.6 Consensus size: 27
68465419 ATTACCAAAG
*
68465429 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
*
68465456 TATCCTC-ATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
68465482 TACCCTCAATTTACA
1 TACCCTCAATTTACA
68465497 AAATGACTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 25 0.66
27 13 0.34
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.38
Consensus pattern (27 bp):
TACCCTCAATTTACAGAATTACCGTTT
Found at i:68465560 original size:26 final size:27
Alignment explanation
Indices: 68465496--68465620 Score: 128
Period size: 27 Copynumber: 4.7 Consensus size: 27
68465486 CTCAATTTAC
* * * * *
68465496 AAAATGACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTTGTTTGT
68465523 AAAATTACCAAAATACCCCTTGTTTGT
1 AAAATTACCAAAATACCCCTTGTTTGT
* *
68465550 -AAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTTGTTTGT
* * **
68465576 GAAATTACCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-TGTTTGT
68465603 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
68465621 TGATTTACAA
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
26 27 0.33
27 53 0.65
28 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTTGTTTGT
Found at i:68465647 original size:53 final size:53
Alignment explanation
Indices: 68465482--68465730 Score: 182
Period size: 53 Copynumber: 4.6 Consensus size: 53
68465472 ATTACCGTTT
** * * *
68465482 TACCCTCAATTTACAAAATGACTAAAATACCCTTGGTTTATAAAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCC-TGGTTTACAAAATTA-CAGAAA
** *** *
68465536 TACCC-CTTGTTTGT-AAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACC-CTGGTTTACAAAATTACAGAAA
*
68465589 TACCCTCAATTTGTAAAATTACCAAAATACCCTGATTTACAAAATTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTGGTTTACAAAATTACAGAAA
* * * * **
68465642 TACCCTTAACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTATTGAAA
1 TACCCTCAA-TTTGT-AAAATTACCA-AAATACC-CTGGTTTACAAAATTACAGAAA
*** * * *
68465698 TACCCTTGGTTTGTACATTTACCAAAACACCCT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCT
68465731 TTGTAGGATG
Statistics
Matches: 154, Mismatches: 31, Indels: 21
0.75 0.15 0.10
Matches are distributed among these distances:
52 1 0.01
53 67 0.44
54 42 0.27
55 19 0.12
56 25 0.16
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTGGTTTACAAAATTACAGAAA
Found at i:68465697 original size:27 final size:27
Alignment explanation
Indices: 68465658--68465709 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
68465648 TAACTTTCTA
68465658 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
* *
68465685 AAAATTATTGAAATACCCTTGGTTT
1 AAAATTATAGAAATACCATTGGTTT
68465710 GTACATTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:68465794 original size:27 final size:26
Alignment explanation
Indices: 68465764--68465823 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
68465754 ACCCCTAATA
68465764 GGTAAAAAGACCGTAA-AGCCCCTGTAG
1 GGTAAAAAGACCGTAATA--CCCTGTAG
** *
68465791 GGTAAAGTGACCGTAATACCCTGTAT
1 GGTAAAAAGACCGTAATACCCTGTAG
68465817 GGTAAAA
1 GGTAAAA
68465824 TGACGAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 13 0.46
27 14 0.50
28 1 0.04
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (26 bp):
GGTAAAAAGACCGTAATACCCTGTAG
Found at i:68465838 original size:26 final size:26
Alignment explanation
Indices: 68465764--68465827 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
68465754 ACCCCTAATA
* *
68465764 GGTAAAAAGACCGTAA-AGCCCCTGTAG
1 GGTAAAATGACCGTAATA--CCCTGTAT
*
68465791 GGTAAAGTGACCGTAATACCCTGTAT
1 GGTAAAATGACCGTAATACCCTGTAT
68465817 GGTAAAATGAC
1 GGTAAAATGAC
68465828 GAATATGCCC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 17 0.53
27 14 0.44
28 1 0.03
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (26 bp):
GGTAAAATGACCGTAATACCCTGTAT
Found at i:68466345 original size:11 final size:11
Alignment explanation
Indices: 68466329--68466379 Score: 63
Period size: 10 Copynumber: 4.8 Consensus size: 11
68466319 GGAACTCAAA
68466329 AAAATTTTCAC
1 AAAATTTTCAC
68466340 AAAA-TTTCA-
1 AAAATTTTCAC
68466349 AAAATTTTCAC
1 AAAATTTTCAC
*
68466360 AAAA-TTTCAAA
1 AAAATTTTC-AC
68466371 AAAATTTTC
1 AAAATTTTC
68466380 TTTAGTACAG
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
9 4 0.11
10 14 0.40
11 13 0.37
12 4 0.11
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATTTTCAC
Found at i:68466353 original size:20 final size:20
Alignment explanation
Indices: 68466328--68466372 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
68466318 AGGAACTCAA
68466328 AAAAATTTTCACAAAATTTC
1 AAAAATTTTCACAAAATTTC
68466348 AAAAATTTTCACAAAATTTC
1 AAAAATTTTCACAAAATTTC
68466368 AAAAA
1 AAAAA
68466373 AATTTTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAAATTTTCACAAAATTTC
Found at i:68488967 original size:20 final size:20
Alignment explanation
Indices: 68488942--68488991 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
68488932 AGGAACTCAA
68488942 AAAAATTTTCACAAAATTTC
1 AAAAATTTTCACAAAATTTC
68488962 AAAAATTTTCACAAAATTTC
1 AAAAATTTTCACAAAATTTC
68488982 AAAAATTTTC
1 AAAAATTTTC
68488992 TTTAGTACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAAATTTTCACAAAATTTC
Found at i:68488971 original size:10 final size:10
Alignment explanation
Indices: 68488942--68488991 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
68488932 AGGAACTCAA
68488942 AAAAATTTTC
1 AAAAATTTTC
68488952 ACAAAA-TTTC
1 A-AAAATTTTC
68488962 AAAAATTTTC
1 AAAAATTTTC
68488972 ACAAAA-TTTC
1 A-AAAATTTTC
68488982 AAAAATTTTC
1 AAAAATTTTC
68488992 TTTAGTACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
9 8 0.22
10 20 0.56
11 8 0.22
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAAATTTTC
Found at i:68492200 original size:30 final size:30
Alignment explanation
Indices: 68492165--68492221 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
68492155 TTTTAAATTG
68492165 AATTTTAACTTTATTTATATTATTTTACTA
1 AATTTTAACTTTATTTATATTATTTTACTA
68492195 AATTTTAACTTTATTTATATTATTTTA
1 AATTTTAACTTTATTTATATTATTTTA
68492222 ATTTTAACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.61
Consensus pattern (30 bp):
AATTTTAACTTTATTTATATTATTTTACTA
Found at i:68492208 original size:26 final size:26
Alignment explanation
Indices: 68492165--68492230 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 26
68492155 TTTTAAATTG
68492165 AATTTTAACTTTATTTATATTATTTTACTA
1 AATTTTAACTTTATTTATATTA---T-CTA
* *
68492195 AATTTTAACTTTATTTATATTATTTT
1 AATTTTAACTTTATTTATATTATCTA
68492221 AATTTTAACT
1 AATTTTAACT
68492231 AACCAATCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 11 0.32
27 1 0.03
30 22 0.65
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (26 bp):
AATTTTAACTTTATTTATATTATCTA
Found at i:68495626 original size:17 final size:16
Alignment explanation
Indices: 68495590--68495623 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
68495580 AGTAAGTTCG
68495590 TATTTTATTATATATT
1 TATTTTATTATATATT
*
68495606 TATTTT-TTATATAAT
1 TATTTTATTATATATT
68495621 TAT
1 TAT
68495624 ATTAGAGTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTTATTATATATT
Found at i:68500671 original size:27 final size:27
Alignment explanation
Indices: 68500636--68500745 Score: 96
Period size: 27 Copynumber: 4.0 Consensus size: 27
68500626 TAGCTACGAG
* * *
68500636 AACAGATATTGTGATAGAGTCACCAGA
1 AACAAATATTGTGACAGAGCCACCAGA
* *
68500663 TACAAATATTGTGGCAGAGCCACCAGA
1 AACAAATATTGTGACAGAGCCACCAGA
* * * *
68500690 AACAAATATTTGTGGCTGAGCTACCA-T
1 AACAAATA-TTGTGACAGAGCCACCAGA
* *
68500717 ATCAAATATTTGTGGCAGAGCCACCAGA
1 AACAAATA-TTGTGACAGAGCCACCAGA
68500745 A
1 A
68500746 TGCTTCCTCC
Statistics
Matches: 68, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
27 52 0.76
28 16 0.24
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
AACAAATATTGTGACAGAGCCACCAGA
Found at i:68500715 original size:28 final size:28
Alignment explanation
Indices: 68500651--68500745 Score: 122
Period size: 27 Copynumber: 3.5 Consensus size: 28
68500641 ATATTGTGAT
* *
68500651 AGAGTCACCAGATACAAATA-TTGTGGC
1 AGAGCCACCAGAAACAAATATTTGTGGC
68500678 AGAGCCACCAGAAACAAATATTTGTGGC
1 AGAGCCACCAGAAACAAATATTTGTGGC
* * * *
68500706 TGAGCTACCA-TATCAAATATTTGTGGC
1 AGAGCCACCAGAAACAAATATTTGTGGC
68500733 AGAGCCACCAGAA
1 AGAGCCACCAGAA
68500746 TGCTTCCTCC
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
27 41 0.72
28 16 0.28
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (28 bp):
AGAGCCACCAGAAACAAATATTTGTGGC
Found at i:68500878 original size:26 final size:26
Alignment explanation
Indices: 68500849--68500911 Score: 101
Period size: 26 Copynumber: 2.4 Consensus size: 26
68500839 AAAATTAACC
68500849 CTAGGGGTATAATGGTAATTTTGCAT-
1 CTAGGGGTATAATGGTAATTTT-CATA
68500875 CTAGGGGTATAATGGTAATTTTCATA
1 CTAGGGGTATAATGGTAATTTTCATA
68500901 CTTAGGGGTAT
1 C-TAGGGGTAT
68500912 TTTAGTAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
25 3 0.09
26 23 0.66
27 9 0.26
ACGTcount: A:0.27, C:0.08, G:0.27, T:0.38
Consensus pattern (26 bp):
CTAGGGGTATAATGGTAATTTTCATA
Found at i:68502816 original size:27 final size:27
Alignment explanation
Indices: 68502786--68502839 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
68502776 AATAGTATCC
* *
68502786 GGTGGGCCTTA-CCTAATAACAGAATCA
1 GGTGGGCCTAAGCCCAAT-ACAGAATCA
68502813 GGTGGGCCTAAGCCCAATACAGAATCA
1 GGTGGGCCTAAGCCCAATACAGAATCA
68502840 ATATTAGATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
GGTGGGCCTAAGCCCAATACAGAATCA
Found at i:68507729 original size:18 final size:18
Alignment explanation
Indices: 68507697--68507731 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68507687 ACGATGTCTC
*
68507697 AAACTATTTTCATGCTTG
1 AAACTATTCTCATGCTTG
*
68507715 AAACTATTCTGATGCTT
1 AAACTATTCTCATGCTT
68507732 CCTATTCTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (18 bp):
AAACTATTCTCATGCTTG
Found at i:68513959 original size:37 final size:37
Alignment explanation
Indices: 68513900--68514008 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
68513890 AGCTCAGACG
* *
68513900 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
68513937 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
68513974 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
68514009 ATATTTTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:68514205 original size:46 final size:46
Alignment explanation
Indices: 68514152--68514288 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
68514142 TGTATATACA
* * * *
68514152 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
68514198 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
68514244 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
68514289 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:68514323 original size:47 final size:47
Alignment explanation
Indices: 68514262--68514648 Score: 567
Period size: 47 Copynumber: 8.1 Consensus size: 47
68514252 ACACATTTCG
* * * *
68514262 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
* * **
68514309 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
68514356 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
* *
68514403 CATTGGCCATTCGGCCTTATCACGCATATATACATAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--CACATACACAT--GTTCACATTCATCA
*
68514454 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
* *
68514501 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACAT----GTTCACATTCATCA
*
68514552 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
68514599 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
68514646 CAT
1 CAT
68514649 AAAATCCTAA
Statistics
Matches: 313, Mismatches: 19, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
47 216 0.69
49 17 0.05
51 80 0.26
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:68514453 original size:145 final size:143
Alignment explanation
Indices: 68514262--68514648 Score: 609
Period size: 145 Copynumber: 2.7 Consensus size: 143
68514252 ACACATTTCG
* *
68514262 CATTAGCCATTCGGCCTTACCA-CATATATACATGTTCACATTCATCACATTGGCCATTCGGCCT
1 CATTGGCCATTCGGCCTTATCACCATATATACATGTTCACATTCATCACATTGGCCATTCGGCCT
* * *
68514326 TATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACAT-G
66 TATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGG
68514390 TTCACATTCATCA
131 TTCACATTCATCA
68514403 CATTGGCCATTCGGCCTTATCACGCATATATACATAGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCAC-CATATATACAT--GTTCACATTCATCACATTGGCCATTCGG
* *
68514468 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATA
63 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA
68514533 TACGGGTTCACATTCATCA
128 T---GGTTCACATTCATCA
* **
68514552 CATTGGCCATTCGGCCTTATCA-CACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCT
1 CATTGGCCATTCGGCCTTATCACCATATATACATGTTCACATTCATCACATTGGCCATTCGGCCT
68514616 TATCACACATACGCATGTTCACATTCATCACAT
66 TATCACACATACGCATGTTCACATTCATCACAT
68514649 AAAATCCTAA
Statistics
Matches: 228, Mismatches: 10, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
141 20 0.09
143 11 0.05
145 153 0.67
147 8 0.04
149 36 0.16
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (143 bp):
CATTGGCCATTCGGCCTTATCACCATATATACATGTTCACATTCATCACATTGGCCATTCGGCCT
TATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGG
TTCACATTCATCA
Found at i:68514473 original size:98 final size:97
Alignment explanation
Indices: 68514262--68514648 Score: 597
Period size: 98 Copynumber: 4.0 Consensus size: 97
68514252 ACACATTTCG
* * * *
68514262 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
68514327 AT--CTCATATATGCAT-GTTCACATTCATCA
66 ATCACACATATATACATGGTTCACATTCATCA
68514356 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
68514421 ATCACGCATATATACATAGGTTCACATTCATCA
66 ATCACACATATATACAT-GGTTCACATTCATCA
*
68514454 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
68514519 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATACA-TGGTTCACATTCATCA
*
68514552 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTT
**
68514617 ATCACAC--ATACGCAT-GTTCACATTCATCA
66 ATCACACATATATACATGGTTCACATTCATCA
68514646 CAT
1 CAT
68514649 AAAATCCTAA
Statistics
Matches: 274, Mismatches: 14, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
94 80 0.29
96 15 0.05
98 179 0.65
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (97 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATATACATGGTTCACATTCATCA
Found at i:68514649 original size:23 final size:23
Alignment explanation
Indices: 68514574--68514649 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
68514564 GGCCTTATCA
68514574 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
68514597 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
68514619 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
68514644 CACATA
1 CACATA
68514650 AAATCCTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 5 0.13
23 17 0.45
24 11 0.29
25 5 0.13
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:68523280 original size:36 final size:36
Alignment explanation
Indices: 68523240--68523311 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
68523230 CCACATACAT
*
68523240 GGCCAGTAGACATGCTCGTGTGTCTAGGTCGTGTCA
1 GGCCAGTAGACACGCTCGTGTGTCTAGGTCGTGTCA
*
68523276 GGCCAGTAGACACGCTCGTGTGTCTAGGTTGTGTCA
1 GGCCAGTAGACACGCTCGTGTGTCTAGGTCGTGTCA
68523312 AACCTGTAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.17, C:0.22, G:0.33, T:0.28
Consensus pattern (36 bp):
GGCCAGTAGACACGCTCGTGTGTCTAGGTCGTGTCA
Found at i:68529269 original size:47 final size:47
Alignment explanation
Indices: 68529191--68529642 Score: 679
Period size: 47 Copynumber: 9.6 Consensus size: 47
68529181 CCCTTCGGGA
* * * * * *
68529191 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
68529238 CCTATCACATATATACACTTTCAGATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
68529285 CTTATCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68529332 CCTATCACATATATACACTTTCAGATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68529379 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68529426 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68529473 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68529520 CTTATCACATATATATACACTTTCACATTCAGCACATTGGCCATTTGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68529569 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68529616 CTTATCACATATATACACTATCACATT
1 CTTATCACATATATACACTTTCACATT
68529643 TATTCAAATA
Statistics
Matches: 372, Mismatches: 31, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
47 329 0.88
49 43 0.12
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68532294 original size:14 final size:14
Alignment explanation
Indices: 68532259--68532299 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
68532249 TTAGGGCAGT
68532259 CACAT-ATTAA-AA
1 CACATAATTAAGAA
*
68532271 CA-AGAATTAAGAA
1 CACATAATTAAGAA
68532284 CACATAATTAAGAA
1 CACATAATTAAGAA
68532298 CA
1 CA
68532300 AGTCAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 1 0.04
12 7 0.29
13 4 0.17
14 12 0.50
ACGTcount: A:0.59, C:0.15, G:0.07, T:0.20
Consensus pattern (14 bp):
CACATAATTAAGAA
Found at i:68537131 original size:39 final size:39
Alignment explanation
Indices: 68537087--68537319 Score: 358
Period size: 39 Copynumber: 6.0 Consensus size: 39
68537077 ATTATATTAT
* *
68537087 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
** *
68537126 CAGCACGAAGCCTGCAAGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
**
68537165 CAGCACGAAGCCTGCGGGACTTTAATCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
68537204 TAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
68537243 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
68537282 CAGCACGAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
68537320 TCAGTGTCTT
Statistics
Matches: 175, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 175 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:68539120 original size:47 final size:49
Alignment explanation
Indices: 68539040--68539172 Score: 163
Period size: 46 Copynumber: 2.8 Consensus size: 49
68539030 TGTAACCCGC
*
68539040 CCATAAGCGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
68539090 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
68539133 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
68539173 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 15
0.78 0.05 0.16
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.41
47 29 0.41
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:68539188 original size:46 final size:44
Alignment explanation
Indices: 68539048--68539188 Score: 126
Period size: 46 Copynumber: 3.0 Consensus size: 44
68539038 GCCCATAAGC
* *
68539048 GAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
68539095 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
68539141 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
68539187 GA
1 GA
68539189 CATGTCACTC
Statistics
Matches: 78, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 33 0.42
47 30 0.38
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:68546662 original size:46 final size:45
Alignment explanation
Indices: 68546569--68546654 Score: 129
Period size: 46 Copynumber: 1.9 Consensus size: 45
68546559 TACATCTCAC
* *
68546569 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
68546615 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
68546655 CCTAGTGACA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 9 0.24
46 28 0.76
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:68559633 original size:19 final size:20
Alignment explanation
Indices: 68559609--68559656 Score: 53
Period size: 23 Copynumber: 2.3 Consensus size: 20
68559599 GATCAGTTGG
68559609 ACCTTT-GATTAATTAACAT
1 ACCTTTGGATTAATTAACAT
*
68559628 ACCTTTTTTGGATTAATTAGCAT
1 ACC---TTTGGATTAATTAACAT
68559651 ACCTTT
1 ACCTTT
68559657 TTTTGACTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
19 3 0.12
20 3 0.12
22 3 0.12
23 15 0.62
ACGTcount: A:0.29, C:0.17, G:0.08, T:0.46
Consensus pattern (20 bp):
ACCTTTGGATTAATTAACAT
Found at i:68559641 original size:23 final size:23
Alignment explanation
Indices: 68559615--68559659 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
68559605 TTGGACCTTT
68559615 GATTAATTAACATACCTTTTTTG
1 GATTAATTAACATACCTTTTTTG
*
68559638 GATTAATTAGCATACCTTTTTT
1 GATTAATTAACATACCTTTTTT
68559660 TGACTGACCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.29, C:0.13, G:0.09, T:0.49
Consensus pattern (23 bp):
GATTAATTAACATACCTTTTTTG
Found at i:68559711 original size:18 final size:17
Alignment explanation
Indices: 68559685--68559719 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
68559675 ATTCTTAAAT
68559685 TTTAAAATTTCAATTTA
1 TTTAAAATTTCAATTTA
*
68559702 TTTAATAATTTTAATTTA
1 TTTAA-AATTTCAATTTA
68559720 ATAATTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTAAAATTTCAATTTA
Found at i:68559727 original size:13 final size:13
Alignment explanation
Indices: 68559696--68559729 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
68559686 TTAAAATTTC
68559696 AATTT-ATTTAAT
1 AATTTAATTTAAT
68559708 AATTTTAATTTAAT
1 AA-TTTAATTTAAT
68559722 AATTTAAT
1 AATTTAAT
68559730 CCAAGGAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 2 0.10
13 9 0.45
14 9 0.45
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATTTAATTTAAT
Found at i:68574623 original size:42 final size:43
Alignment explanation
Indices: 68574498--68574624 Score: 129
Period size: 42 Copynumber: 3.0 Consensus size: 43
68574488 GTTGACATTT
* * *
68574498 GTTTGAGATAT-CGTGTAAGACCGTGTCTGGGACACAGGCCTC
1 GTTTGAGATTTACGTGTAAGACCATGTCTGGGACACAGGCATC
*
68574540 GTTTGAGATTTACGTATAAGACCATGTCTGGGACATC-GGCATC
1 GTTTGAGATTTACGTGTAAGACCATGTCTGGGACA-CAGGCATC
* * *
68574583 GTATCT-A-ATTT-TGTGTAAGACCCTGTCTGGGACAGAGGCATC
1 GT-T-TGAGATTTACGTGTAAGACCATGTCTGGGACACAGGCATC
68574625 AATATTGAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
42 36 0.50
43 32 0.44
44 3 0.04
45 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (43 bp):
GTTTGAGATTTACGTGTAAGACCATGTCTGGGACACAGGCATC
Found at i:68574680 original size:85 final size:85
Alignment explanation
Indices: 68574510--68574666 Score: 192
Period size: 85 Copynumber: 1.8 Consensus size: 85
68574500 TTGAGATATC
* * * * * **
68574510 GTGTAAGACCGTGTCTGGGACACAGGCCTCGTTTGAGATTTACGTATAAGACCATGTCTGGGACA
1 GTGTAAGACCCTGTCTGGGACACAGGCATCATTTGAGATTTACATATAAGACCACGTAAGGGACA
68574575 TCGGCATCGTATCTAATTTT
66 TCGGCATCGTATCTAATTTT
* *
68574595 GTGTAAGACCCTGTCTGGGACAGAGGCATCAATATTGA-A-TTACATGTAAGACCACGTAAGGGA
1 GTGTAAGACCCTGTCTGGGACACAGGCATC-AT-TTGAGATTTACATATAAGACCACGTAAGGGA
*
68574658 CGTCGGCAT
64 CATCGGCAT
68574667 TGTACTTGAT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
85 54 0.90
86 2 0.03
87 4 0.07
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (85 bp):
GTGTAAGACCCTGTCTGGGACACAGGCATCATTTGAGATTTACATATAAGACCACGTAAGGGACA
TCGGCATCGTATCTAATTTT
Found at i:68576425 original size:40 final size:39
Alignment explanation
Indices: 68576381--68576605 Score: 227
Period size: 40 Copynumber: 5.7 Consensus size: 39
68576371 GCCACTAGCT
* *
68576381 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * *
68576421 CAAATGCCTTCGGGACTTAGCCTGGTATAATAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* * *
68576460 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * * *
68576500 CAAACGCCTTCGAGACTTAGCCCGGATATAGTAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * * ** * *
68576540 CGAATGCCTTCGGGACTTAACCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
68576580 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
68576606 TATCATCCGA
Statistics
Matches: 154, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
39 38 0.25
40 116 0.75
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:68576479 original size:79 final size:80
Alignment explanation
Indices: 68576381--68576565 Score: 246
Period size: 79 Copynumber: 2.3 Consensus size: 80
68576371 GCCACTAGCT
* * * * * * *
68576381 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCTGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGAGACTTAGCCCGG
68576446 -TATAATAACTCACA
66 ATATAATAACTCACA
* *
68576460 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGTACAAACGCCTTCGAGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGAGACTTAGCCCGG
* *
68576525 ATATAGTAGCTCACA
66 ATATAATAACTCACA
* *
68576540 CGAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68576566 ATTAGCCACT
Statistics
Matches: 92, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
79 56 0.61
80 36 0.39
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGAGACTTAGCCCGG
ATATAATAACTCACA
Found at i:68576597 original size:80 final size:78
Alignment explanation
Indices: 68576381--68576605 Score: 224
Period size: 79 Copynumber: 2.8 Consensus size: 78
68576371 GCCACTAGCT
* * * * * * *
68576381 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCTGG
1 CAAATGCCTTCGGGACTTAACCCGGATATA-TAGCTAGTACAAATGCCTTCGGGACTTAGCCCGG
68576446 TATAATAACTCACA
65 TATAATAACTCACA
* * * *
68576460 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGTACAAACGCCTTCGAGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATAT-ATAGCTAGTACAAATGCCTTCGGGACTTAGCCCGG
* *
68576525 ATATAGTAGCTCACA
65 -TATAATAACTCACA
*
68576540 CGAATGCCTTCGGGACTTAACCCGGA-AT-TAGCCACTAGCT-CAAATG-CTCTCGGGACTTAGC
1 CAAATGCCTTCGGGACTTAACCCGGATATATAG---CTAG-TACAAATGCCT-TCGGGACTTAGC
68576601 CCGGT
61 CCGGT
68576606 TATCATCCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
77 3 0.02
79 60 0.48
80 60 0.48
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAACCCGGATATATAGCTAGTACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCACA
Found at i:68584828 original size:27 final size:27
Alignment explanation
Indices: 68584787--68585033 Score: 244
Period size: 27 Copynumber: 9.1 Consensus size: 27
68584777 AAACATACAT
*
68584787 CACATAGGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * * *
68584814 CACGTAAAGGAAAAATAGTCACTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
** * *
68584841 CATGTAAGGGCAAAACAGTTATTCTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
** * * *
68584868 CTTATAGGGGCGAAACTGTC-TTTCTAC
1 CACATAAGGGCAAAACAGTCATTT-TAC
* *
68584895 CATATAAGGGCAAAACAGTCATTCTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
68584922 CACATAAGGGCAAAATAGTCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
68584949 CGCATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
68584976 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
68585003 CACACAGGGGCAATACAGTCATTTTGC
1 CACATAAGGGCAAAACAGTCATTTTAC
68585030 CACA
1 CACA
68585034 AAGAGGAGTT
Statistics
Matches: 181, Mismatches: 37, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
26 2 0.01
27 177 0.98
28 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:68591272 original size:22 final size:20
Alignment explanation
Indices: 68591233--68591273 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
68591223 CACGGCCTAC
*
68591233 CCACACGGGTGTGTCCCAAG
1 CCACACGGGTGTGACCCAAG
68591253 CCACACGGGCGTGTGACCCAA
1 CCACAC-GG-GTGTGACCCAA
68591274 TTTTGATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 2 0.11
22 10 0.56
ACGTcount: A:0.22, C:0.37, G:0.29, T:0.12
Consensus pattern (20 bp):
CCACACGGGTGTGACCCAAG
Found at i:68595179 original size:24 final size:23
Alignment explanation
Indices: 68595134--68595180 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
68595124 AGAAGAATCC
*
68595134 TCCCTTTTATTTTTCTGATCCAT
1 TCCCTTTTATTTTTCAGATCCAT
* *
68595157 TCCCTTTGTCTTTTTCAGCTCCAT
1 TCCCTTT-TATTTTTCAGATCCAT
68595181 CTCCGCTTGC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.11, C:0.30, G:0.06, T:0.53
Consensus pattern (23 bp):
TCCCTTTTATTTTTCAGATCCAT
Found at i:68598214 original size:27 final size:27
Alignment explanation
Indices: 68598191--68598432 Score: 313
Period size: 27 Copynumber: 8.9 Consensus size: 27
68598181 AAATACCGTT
* *
68598191 GATTTACAAAATTACTGTTTTACCATC
1 GATTTACAAAATTACTATTTTACCCTC
* *
68598218 GATTTATAAAATTACCATTTTACCCTC
1 GATTTACAAAATTACTATTTTACCCTC
68598245 GATTTACAAAATTACTATTTTACCCTC
1 GATTTACAAAATTACTATTTTACCCTC
* * *
68598272 GATTTATAGAATTACTGTTTTACCCTC
1 GATTTACAAAATTACTATTTTACCCTC
* ** *
68598299 AATTGGCAGAATTACTATTTTACCCTC
1 GATTTACAAAATTACTATTTTACCCTC
*
68598326 GATTTACAGAATTACTATTTTACCCTC
1 GATTTACAAAATTACTATTTTACCCTC
*
68598353 GATTTACAAAATTAATATTTTACCCTC
1 GATTTACAAAATTACTATTTTACCCTC
* *
68598380 GATTTACAGAATTACCATTTTTACCCTC
1 GATTTACAAAATTACTA-TTTTACCCTC
* * *
68598408 AATTTATAAAATTACCATTTTACCC
1 GATTTACAAAATTACTATTTTACCC
68598433 CTAGGGTGTT
Statistics
Matches: 189, Mismatches: 25, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
27 165 0.87
28 24 0.13
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.40
Consensus pattern (27 bp):
GATTTACAAAATTACTATTTTACCCTC
Found at i:68600930 original size:27 final size:27
Alignment explanation
Indices: 68600900--68601089 Score: 263
Period size: 27 Copynumber: 7.0 Consensus size: 27
68600890 ATTATCAAAA
* *
68600900 TACCGTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
68600927 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
68600954 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
68600981 TACCCTCGATTTACAAAACTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
68601008 TACCCTCAATTGACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
68601035 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
68601062 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
68601089 T
1 T
68601090 CATTTTACCC
Statistics
Matches: 141, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 141 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:68600964 original size:54 final size:54
Alignment explanation
Indices: 68600900--68601089 Score: 299
Period size: 54 Copynumber: 3.5 Consensus size: 54
68600890 ATTATCAAAA
* *
68600900 TACCGTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTT
* *
68600954 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAACTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTT
* * * * *
68601008 TACCCTCAATTGACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTT
68601062 TACCCTCGATTTACAAAATTACTGTTTT
1 TACCCTCGATTTACAAAATTACTGTTTT
68601090 CATTTTACCC
Statistics
Matches: 121, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 121 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:68605835 original size:28 final size:28
Alignment explanation
Indices: 68605789--68605856 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
68605779 CTATTTACGA
*
68605789 CACTTAGTGTGCAAGATATCGAGTGTGG
1 CACTTAGTGTGCAAGATATCGAGTATGG
** *
68605817 CACTTAGTGTGTGATATATCGAGTATGG
1 CACTTAGTGTGCAAGATATCGAGTATGG
68605845 CACTTAGTGTGC
1 CACTTAGTGTGC
68605857 GAGGCATAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (28 bp):
CACTTAGTGTGCAAGATATCGAGTATGG
Done.