Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 208 of 352
Found at i:68609289 original size:39 final size:40
Alignment explanation
Indices: 68609175--68609400 Score: 248
Period size: 40 Copynumber: 5.7 Consensus size: 40
68609165 GCTACTCGTT
* *
68609175 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
68609215 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
68609255 CAAATGCCTTCGGG-CTTAACTCGGATTTACTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
68609294 CAAATGCCTTC-GGATCTTAGTA-CCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTA--ACCCGGATTTAGTAACTCGCA
** * * * *
68609335 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
68609376 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
68609401 CATCATTCAA
Statistics
Matches: 164, Mismatches: 14, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.21
40 80 0.49
41 47 0.29
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:68614115 original size:21 final size:21
Alignment explanation
Indices: 68614089--68614130 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
68614079 ATTACAGTGA
68614089 AACCCCTTTAAGTCCGTAGAC
1 AACCCCTTTAAGTCCGTAGAC
68614110 AACCCCTTTAAGTCCGTAGAC
1 AACCCCTTTAAGTCCGTAGAC
68614131 TCAACTCGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (21 bp):
AACCCCTTTAAGTCCGTAGAC
Found at i:68617306 original size:40 final size:40
Alignment explanation
Indices: 68617269--68617494 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
68617259 GCTACTCGTT
* *
68617269 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
68617309 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
68617349 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
68617389 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * * *
68617429 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-AACTCGCA
*
68617470 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
68617495 CATCATTCAA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 152 0.90
41 14 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:68620240 original size:28 final size:25
Alignment explanation
Indices: 68620173--68620275 Score: 138
Period size: 24 Copynumber: 4.1 Consensus size: 25
68620163 ATATGACATT
*
68620173 ATGCTAAGTGAAATAAGACCATGGC
1 ATGCTAAGTGAAATAAGTCCATGGC
*
68620198 AT-CTAAGTGAAATAATTCCATGGC
1 ATGCTAAGTGAAATAAGTCCATGGC
*
68620222 AATGTGCTAAGTGAAATAAGTCCACGGC
1 -A--TGCTAAGTGAAATAAGTCCATGGC
68620250 AT-CTAAGTGAAATAAGTCCATGGC
1 ATGCTAAGTGAAATAAGTCCATGGC
68620274 AT
1 AT
68620276 TGTGCTAAGT
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
24 43 0.62
25 4 0.06
27 2 0.03
28 20 0.29
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (25 bp):
ATGCTAAGTGAAATAAGTCCATGGC
Found at i:68620241 original size:52 final size:52
Alignment explanation
Indices: 68620174--68620287 Score: 192
Period size: 52 Copynumber: 2.2 Consensus size: 52
68620164 TATGACATTA
* *
68620174 TGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAATTCCATGGCAATG
1 TGCTAAGTGAAATAAGACCACGGCATCTAAGTGAAATAAGTCCATGGCAATG
* *
68620226 TGCTAAGTGAAATAAGTCCACGGCATCTAAGTGAAATAAGTCCATGGCATTG
1 TGCTAAGTGAAATAAGACCACGGCATCTAAGTGAAATAAGTCCATGGCAATG
68620278 TGCTAAGTGA
1 TGCTAAGTGA
68620288 GAAATTTCCT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 58 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (52 bp):
TGCTAAGTGAAATAAGACCACGGCATCTAAGTGAAATAAGTCCATGGCAATG
Found at i:68620380 original size:51 final size:51
Alignment explanation
Indices: 68620317--68620557 Score: 333
Period size: 51 Copynumber: 4.7 Consensus size: 51
68620307 TTAGGGATAA
* **
68620317 AATAGCTTTGGACACAAGTTTGGTACCGTGTGAAGGCCACTTTGTGAATAT
1 AATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAT
* * * *
68620368 AATAGGTTTGGACACAAGTGTGGTACTATGTAAAGGCCACTTTTTAAATAT
1 AATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAT
*
68620419 AATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAA
1 AATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAT
* * * *
68620470 AATGGCTCTAGATACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATGA-
1 AATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAT-AT
*
68620521 AATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGC
1 AATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGC
68620558 AACCGTGTAT
Statistics
Matches: 167, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
51 166 0.99
52 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (51 bp):
AATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAT
Found at i:68623356 original size:22 final size:21
Alignment explanation
Indices: 68623328--68623392 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
68623318 GCAAATACGT
68623328 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
*
68623350 TTGGCACAGAGCCATATAT-AGG
1 TTGGCACA-AACCATA-ATCAGG
**
68623372 TTGGTGCAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
68623393 AATAATTGGC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
21 3 0.09
22 30 0.86
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:68623601 original size:41 final size:41
Alignment explanation
Indices: 68623532--68623654 Score: 192
Period size: 41 Copynumber: 3.0 Consensus size: 41
68623522 CTTAAAAGCC
* * *
68623532 ACCGGTGGATCCACAGTCATCAAGCAACCATGCGATCCTTA
1 ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
* * *
68623573 ATCGGTGGACCCACGGTCGTCAAACAACCATGCGATCCTCA
1 ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
68623614 ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
1 ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
68623655 CTTTCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.27, C:0.33, G:0.22, T:0.18
Consensus pattern (41 bp):
ACCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
Found at i:68626073 original size:19 final size:20
Alignment explanation
Indices: 68626036--68626073 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68626026 ATAAGGTGGT
68626036 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
68626056 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
68626074 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:68633115 original size:37 final size:37
Alignment explanation
Indices: 68633062--68633164 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
68633052 TGAATAGTCC
* *
68633062 CCACACATAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
68633099 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
68633136 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
68633165 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:68633690 original size:48 final size:48
Alignment explanation
Indices: 68633311--68633673 Score: 627
Period size: 48 Copynumber: 7.6 Consensus size: 48
68633301 GCACATCGCC
* * *
68633311 TACATATTTCACATTAGCCATTCAGCTTTACCAAATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
68633359 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
68633407 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
68633455 TACATATTTCACATTAGCCATTCGGCTTTATCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
68633503 TACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
68633551 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
68633599 TATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
68633647 TACATATATCACACTAGCCATTCGGCT
1 TACATATTTCACACTAGCCATTCGGCT
68633674 CCACCACACA
Statistics
Matches: 300, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 300 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:68637224 original size:46 final size:46
Alignment explanation
Indices: 68637174--68637346 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
68637164 TGGTTGAGCA
68637174 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
68637220 TCCGAACTCGTTAAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
68637265 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
68637313 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68637347 GGGGCAGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68637330 original size:93 final size:93
Alignment explanation
Indices: 68637171--68637341 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
68637161 GGATGGTTGA
* *
68637171 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTAAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
68637236 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
68637264 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
68637329 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68637342 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68639853 original size:39 final size:39
Alignment explanation
Indices: 68639781--68639997 Score: 375
Period size: 39 Copynumber: 5.6 Consensus size: 39
68639771 ATGCAAGACA
68639781 CTGGAAATGTATCCGGGC-AAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68639819 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
68639858 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68639897 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
68639936 CTGGAAATATATCCGGGAC-AAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGG-CTAAAGTCCCGCAGGCTTCGTG
*
68639975 CTAGAAATGTATCCGGGCTAAAG
1 CTGGAAATGTATCCGGGCTAAAG
68639998 ATATAATTTC
Statistics
Matches: 169, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
38 19 0.11
39 149 0.88
40 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:68643317 original size:28 final size:26
Alignment explanation
Indices: 68643276--68643360 Score: 79
Period size: 23 Copynumber: 3.2 Consensus size: 26
68643266 GTGACAGAGT
68643276 ACCAGATACAGATATTTTGTAGCAGTGCC
1 ACCAGA-ACAGATA-TTTGT-GCAGTGCC
*
68643305 ACCAGAACAGATA-ATG-GCAG-GCC
1 ACCAGAACAGATATTTGTGCAGTGCC
68643328 ACCAGAACAGATAATTTGTGGCA-TAGCC
1 ACCAGAACAGAT-ATTTGT-GCAGT-GCC
68643356 ACCAG
1 ACCAG
68643361 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
23 15 0.31
24 5 0.10
25 2 0.04
26 2 0.04
27 3 0.06
28 15 0.31
29 6 0.12
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (26 bp):
ACCAGAACAGATATTTGTGCAGTGCC
Found at i:68643328 original size:23 final size:24
Alignment explanation
Indices: 68643297--68643342 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 24
68643287 ATATTTTGTA
68643297 GCAGTGCCACCAGAACAGATAATG
1 GCAGTGCCACCAGAACAGATAATG
68643321 GCAG-GCCACCAGAACAGATAAT
1 GCAGTGCCACCAGAACAGATAAT
68643343 TTGTGGCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.39, C:0.26, G:0.24, T:0.11
Consensus pattern (24 bp):
GCAGTGCCACCAGAACAGATAATG
Found at i:68643513 original size:28 final size:28
Alignment explanation
Indices: 68643466--68643530 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
68643456 AAATTAACCC
*
68643466 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
68643494 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
68643522 TAGGGGTAT
1 TAGGGGTAT
68643531 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:68651034 original size:26 final size:27
Alignment explanation
Indices: 68650973--68651039 Score: 100
Period size: 26 Copynumber: 2.5 Consensus size: 27
68650963 TTGATAGAGT
*
68650973 ACCAGATACAGATATTTGTAGCAGTGCC
1 ACCAGA-ACAGATATATGTAGCAGTGCC
*
68651001 ACCAGAACAGATATATGTGGCAG-GCC
1 ACCAGAACAGATATATGTAGCAGTGCC
68651027 ACCAGAACAGATA
1 ACCAGAACAGATA
68651040 ATTTTGTGGC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 16 0.43
27 15 0.41
28 6 0.16
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (27 bp):
ACCAGAACAGATATATGTAGCAGTGCC
Found at i:68651209 original size:28 final size:28
Alignment explanation
Indices: 68651165--68651226 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
68651155 ATTAACCCTA
*
68651165 GGGTATAAAGGTCATTTTGCATACATAG
1 GGGTATAAAGGTAATTTTGCATACATAG
*
68651193 GGGTATAATGGTAATTTTGCATACATAG
1 GGGTATAAAGGTAATTTTGCATACATAG
68651221 GGGTAT
1 GGGTAT
68651227 TCTAGTACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.34
Consensus pattern (28 bp):
GGGTATAAAGGTAATTTTGCATACATAG
Found at i:68656202 original size:39 final size:39
Alignment explanation
Indices: 68656158--68656348 Score: 301
Period size: 39 Copynumber: 4.9 Consensus size: 39
68656148 ATGCAAGACA
* *
68656158 CTGGAAATGTATCCGGGCTAAATTCTCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68656197 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
68656236 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
68656275 CTGGAAATGTATCCGGGCTAAAGTCCCGCAAGCTTCGTA
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
68656314 CTGGAAATATATCTGGGCCAAAGTCCCGCAGGCTT
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
68656349 TGTGACAGCC
Statistics
Matches: 140, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 140 1.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:68658187 original size:40 final size:40
Alignment explanation
Indices: 68658128--68658277 Score: 212
Period size: 40 Copynumber: 3.8 Consensus size: 40
68658118 CATTTGAATG
* * *
68658128 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
68658168 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
68658208 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
68658248 ATACCCGGGTTAAGACCCGAAGGCAATTGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGT
68658278 ACTTGTGGTT
Statistics
Matches: 100, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 97 0.97
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:68658291 original size:80 final size:80
Alignment explanation
Indices: 68658128--68658299 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 80
68658118 CATTTGAATG
* * * * *
68658128 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* * *
68658193 TTTGTGCGAGTTGAT
66 ATTGTACGAGTGGAT
* *
68658208 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
68658272 AATTGTACTTGTGGTT
65 AATTGTACGAGTGGAT
68658288 ATATCC-GGCTAA
1 ATATCCGGGCTAA
68658300 ATTCCGAAGA
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 6 0.08
80 70 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTACGAGTGGAT
Found at i:68663235 original size:14 final size:14
Alignment explanation
Indices: 68663216--68663246 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
68663206 AATCAAATTG
68663216 CATTATCAATGAGT
1 CATTATCAATGAGT
*
68663230 CATTATCAGTGAGT
1 CATTATCAATGAGT
68663244 CAT
1 CAT
68663247 ACACCTTAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (14 bp):
CATTATCAATGAGT
Found at i:68663399 original size:28 final size:28
Alignment explanation
Indices: 68663309--68663407 Score: 76
Period size: 27 Copynumber: 3.6 Consensus size: 28
68663299 TTTCACCCTA
* * * * *
68663309 CAAGGGTGTTTTGGTAAATCTAAAAAC-
1 CAAGGGTATTTCGGTAATTTTACAAACT
68663336 CAAGGGTATTTCGGTAATTTTACAAACT
1 CAAGGGTATTTCGGTAATTTTACAAACT
* ** ** *
68663364 -AATGGTATTTTTGTAATTTTTGAAAGT
1 CAAGGGTATTTCGGTAATTTTACAAACT
*
68663391 CAAGGGTATTTCAGTAA
1 CAAGGGTATTTCGGTAA
68663408 ATTAGGGCTA
Statistics
Matches: 56, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
27 43 0.77
28 13 0.23
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.37
Consensus pattern (28 bp):
CAAGGGTATTTCGGTAATTTTACAAACT
Found at i:68663446 original size:27 final size:27
Alignment explanation
Indices: 68663406--68663673 Score: 234
Period size: 27 Copynumber: 9.9 Consensus size: 27
68663396 GTATTTCAGT
* *
68663406 AAATT-AGGGCTATTTTTGTAATTTTCC
1 AAATTAAGGG-TATTTTGGTAATTTTAC
* * *
68663433 AAATTAAGGGTATTTCGATAATTTTTC
1 AAATTAAGGGTATTTTGGTAATTTTAC
*
68663460 AAA-TCAGGAGTATTTTGGTAATTTTAC
1 AAATTAAGG-GTATTTTGGTAATTTTAC
* *
68663487 AAATTGAGGGTATTTTGATAATTTTAC
1 AAATTAAGGGTATTTTGGTAATTTTAC
* ** * *
68663514 AAGTCGAGGGTATTTCGATAATTTTAC
1 AAATTAAGGGTATTTTGGTAATTTTAC
** ** *** *
68663541 AGGTCGAGGGTATTTCAATAATTTCAC
1 AAATTAAGGGTATTTTGGTAATTTTAC
*
68663568 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAATTAAGGGTATTTTGGTAATTTTAC
* *
68663595 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATTAAGGGTATTTTGGTAATTTTAC
** * *
68663622 AAACCAATGGTATTTTGGTAATTTTGC
1 AAATTAAGGGTATTTTGGTAATTTTAC
* *
68663649 CAATTGAGGGTATTTTGGTAATTTT
1 AAATTAAGGGTATTTTGGTAATTTT
68663674 GTAAACCAAG
Statistics
Matches: 203, Mismatches: 35, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
26 4 0.02
27 191 0.94
28 8 0.04
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
AAATTAAGGGTATTTTGGTAATTTTAC
Found at i:68663475 original size:54 final size:54
Alignment explanation
Indices: 68663411--68663673 Score: 269
Period size: 54 Copynumber: 4.9 Consensus size: 54
68663401 TCAGTAAATT
* * * * *
68663411 AGGGCTATTTTTGTAATTTTCCAAATTAAGGGTATTTCGATAATTTTTCAAATC-
1 AGGG-TATTTTGGTAATTTTACAAATTGAGGGTATTTTGATAATTTTACAAATCA
* *
68663465 AGGAGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGATAATTTTACAAGTCG
1 AGG-GTATTTTGGTAATTTTACAAATTGAGGGTATTTTGATAATTTTACAAATCA
* * ** * ** * *
68663520 AGGGTATTTCGATAATTTTACAGGTCGAGGGTATTTCAATAATTTCACAAATTA
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGATAATTTTACAAATCA
* * * *
68663574 GGGGTATTTTGGTAATTTTACAAA-TCAGGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTTGATAATTTTACAAATCA
* * * *
68663628 ATGGTATTTTGGTAATTTTGCCAATTGAGGGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGATAATTTT
68663674 GTAAACCAAG
Statistics
Matches: 170, Mismatches: 35, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
53 1 0.01
54 163 0.96
55 6 0.04
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.42
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGATAATTTTACAAATCA
Found at i:68663511 original size:81 final size:80
Alignment explanation
Indices: 68663406--68663691 Score: 295
Period size: 81 Copynumber: 3.5 Consensus size: 80
68663396 GTATTTCAGT
* * * *
68663406 AAATTAGGGCTATTTTTGTAATTTTCCAAATTAAGGGTATTTCGATAATTTTTCAAATC-AGGAG
1 AAATTAGGG-TATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGG-G
68663470 TATTTTGGTAATTTTAC
64 TATTTTGGTAATTTTAC
* * * ** *
68663487 AAATTGAGGGTATTTTGATAATTTTACAAGTCGAGGGTATTTCGATAATTTTACAGGTCGAGGGT
1 AAATT-AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGGGT
*** *
68663552 ATTTCAATAATTTCAC
65 ATTTTGGTAATTTTAC
* * * * *
68663568 AAATTAGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAATGGT
1 AAATTA-GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGGGT
*
68663633 ATTTTGGTAATTTTGC
65 ATTTTGGTAATTTTAC
* ** * *
68663649 CAATTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGCATTTC
1 AAATT-AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTC
68663692 AGTAATTCTA
Statistics
Matches: 165, Mismatches: 36, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
80 1 0.01
81 156 0.95
82 8 0.05
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
AAATTAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGGGTA
TTTTGGTAATTTTAC
Found at i:68663750 original size:26 final size:27
Alignment explanation
Indices: 68663680--68663750 Score: 85
Period size: 26 Copynumber: 2.7 Consensus size: 27
68663670 TTTTGTAAAC
68663680 CAAGGGCATTTCAGTAATTCTACACTA
1 CAAGGGCATTTCAGTAATTCTACACTA
* *
68663707 -TAGGGTTATTTCAGTAATT-TATC-CTA
1 CAAGGG-CATTTCAGTAATTCTA-CACTA
68663733 CAAGGGCATTTCAGTAAT
1 CAAGGGCATTTCAGTAAT
68663751 ACTAGCCTAC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
26 20 0.54
27 17 0.46
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (27 bp):
CAAGGGCATTTCAGTAATTCTACACTA
Found at i:68663759 original size:27 final size:25
Alignment explanation
Indices: 68663680--68663761 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 25
68663670 TTTTGTAAAC
68663680 CAAGGGCATTTCAGTAATTCTACACTA
1 CAAGGGCATTTCAGTAA-TCTAC-CTA
* * *
68663707 -TAGGGTTATTTCAGTAATTTATCCTA
1 CAAGGG-CATTTCAGTAATCTA-CCTA
68663733 CAAGGGCATTTCAGTAATACTAGCCTA
1 CAAGGGCATTTCAGTAAT-CTA-CCTA
68663760 CA
1 CA
68663762 GATATGAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
26 21 0.48
27 23 0.52
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (25 bp):
CAAGGGCATTTCAGTAATCTACCTA
Found at i:68668956 original size:39 final size:38
Alignment explanation
Indices: 68668925--68669004 Score: 106
Period size: 39 Copynumber: 2.1 Consensus size: 38
68668915 TATATGTCCA
* *
68668925 GCACGTAGCCTGCGGACCTAAAGTCCGGATATAATTCTC
1 GCACATAGCCTGCGGACATAAAGTCCGGATAT-ATTCTC
* *
68668964 GCATATAGCCTGCGGACATGAAGTCCGGATATAATTCTC
1 GCACATAGCCTGCGGACATAAAGTCCGGATAT-ATTCTC
68669003 GC
1 GC
68669005 GTATATATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (38 bp):
GCACATAGCCTGCGGACATAAAGTCCGGATATATTCTC
Found at i:68671845 original size:24 final size:24
Alignment explanation
Indices: 68671701--68671844 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
68671691 GCTTTATCAT
*
68671701 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
68671726 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68671750 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
68671774 ATAACTGGGGCATAAGCTCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
* *
68671798 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
68671822 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
68671845 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
24 97 0.89
25 12 0.11
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:68671916 original size:9 final size:9
Alignment explanation
Indices: 68671902--68671954 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
68671892 ACATCACGTG
68671902 CATATCATA
1 CATATCATA
*
68671911 CATATCATGTG
1 CATATCA--TA
68671922 CATATCATA
1 CATATCATA
*
68671931 CATATCATGTG
1 CATATCA--TA
68671942 CATATCATA
1 CATATCATA
68671951 CATA
1 CATA
68671955 CCATGTTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.34
Consensus pattern (9 bp):
CATATCATA
Found at i:68671922 original size:20 final size:20
Alignment explanation
Indices: 68671894--68671960 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
68671884 TTATGAATAC
*
68671894 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
68671914 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
68671934 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
68671954 ACCATGT
1 ATCATGT
68671961 TTATCAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:68671925 original size:11 final size:11
Alignment explanation
Indices: 68671894--68671949 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
68671884 TTATGAATAC
*
68671894 ATCACGTGCAT
1 ATCATGTGCAT
*
68671905 ATCA--TACAT
1 ATCATGTGCAT
68671914 ATCATGTGCAT
1 ATCATGTGCAT
*
68671925 ATCA--TACAT
1 ATCATGTGCAT
68671934 ATCATGTGCAT
1 ATCATGTGCAT
68671945 ATCAT
1 ATCAT
68671950 ACATACCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:68676762 original size:29 final size:28
Alignment explanation
Indices: 68676715--68676827 Score: 104
Period size: 27 Copynumber: 4.0 Consensus size: 28
68676705 CATGAGATTG
* *
68676715 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-AATTATAT-A
* *
68676744 GCACTAAGTGTCCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
68676772 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
* * **
68676799 GCACTGAGTGTACGAACTTAATATATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATATA
68676828 TTTTTGAATC
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.33
28 24 0.33
29 24 0.33
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:68676787 original size:28 final size:28
Alignment explanation
Indices: 68676715--68676809 Score: 113
Period size: 27 Copynumber: 3.4 Consensus size: 28
68676705 CATGAGATTG
* * *
68676715 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
*
68676744 GCACTAAGTGTCCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
68676772 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
68676799 GCACTGAGTGT
1 GCACTAAGTGT
68676810 ACGAACTTAA
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
27 21 0.36
28 20 0.34
29 18 0.31
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:68690868 original size:28 final size:28
Alignment explanation
Indices: 68690792--68690892 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
68690782 ATAGTAAGTC
*
68690792 CGCACACTTAGTGTTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68690819 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
68690848 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68690876 TGCACACTTAGTGCTAT
1 CGCACACTTAGTGCTAT
68690893 GCAATTTATT
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
27 13 0.19
28 37 0.54
29 18 0.26
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68693530 original size:659 final size:653
Alignment explanation
Indices: 68692246--68693560 Score: 2444
Period size: 659 Copynumber: 2.0 Consensus size: 653
68692236 TAATTACATA
68692246 GACATTATGACTATTTAAATCAATAATATATGCTTAATGACTTACCTTGTGTTGGGTAAAATAAC
1 GACATTATGACTATTTAAATCAATAATATATGCTTAATGACTTACCTTGTGTTGGGTAAAATAAC
68692311 TCCAAGTCGACTACTCGATGATCTTCGATTTCCCCTTGTTGGACGCCTCTCCTTTAGGATCTTGA
66 TCCAAGTCGACTACTCGATGATCTTCGATTTCCCCTTGTTGGACGCCTCTCCTTTAGGATCTTGA
68692376 GCTTAAACAAATAAATTAACTCATTCAACCGCTTTGCTACATATATTGGTATTCACATTTTAATG
131 GC---AACAAATAAATTAACTCATTCAACCGCTTTGCTACATATATTGGTATTCACATTTTAATG
68692441 ATTTTATACATAGGAATGGCATGGTAAAATTTTTATCTTGCTACCTTGTGTTCTTAGCTATTCGG
193 ATTTTATACATAGGAATGGCATGGTAAAATTTTTATCTTGCTACCTTGTGTTCTTAGCTATTCGG
68692506 CTAATAACCTTATGCAATTACCATACTTCAATATCTAATCACACATGCATATGCATACTTGGACA
258 CTAATAACCTTATGCAATTACCATACTTCAATATCTAATCACACATGCATATGCATACTTGGACA
68692571 TTCGGCAATCACCTTGCTAATTTTATACTCAACATCACATAAGCTCCCAAGTGATGGCCGAATAT
323 TTCGGCAATCACCTTGCTAATTTTATACTCAACATCACATAAGCTCCCAAGTGATGGCCGAATAT
68692636 GTATATCTATACTATCACCTATAATTCCTCAAATCACAACATTTCATCTCATGAACACTTGACCC
388 GTATATCTATACTATCACCTATAATTCCTCAAATCACAACATTTCATCTCATGAACACTTGACCC
68692701 ATTTCTCACAAAAAATGAAACAACAACTAAAATGAACATCCCATTTTTATCCCATATAGCCGATT
453 ATTTCTCACAAAAAATGAAACAACAACTAAAATGAACATCCCATTTTTATCCCATATAGCCGATT
68692766 GCTTCATTTGTTACCCAACTAACAATTCAACAATTTCAACCTCATTACAACCTCTACCTATTCAA
518 GCTTCATTTGTTACCCAACTAACAATTCAACAATTTCAACCTCATTACAACCTCTACCTATTCAA
68692831 TATAACATGAACACAATCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCATTTTAACCT
583 TATAACATGAACACAATCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCATTTTAACCT
68692896 CAACTT
648 CAACTT
68692902 GACATTATGACTATTTAAATTCAATACCAAATATATGCTTAATGACTTACCTTGTGTTGGGTAAA
1 GACATTATGACTATTTAAA-TCAAT----AATATATGCTTAATGACTTACCTTGTGTTGGGTAAA
68692967 ATAACTCCAAGTCGACTACTCGATGATCTTCGATTTCCCCTTGTTGGACGCCTCTCC-TTAGGAT
61 ATAACTCCAAGTCGACTACTCGATGATCTTCGATTTCCCCTTGTTGGACGCCTCTCCTTTAGGAT
*
68693031 CTTGAAGC-A-AAATAAA-TAATTCATTCAACCGCTTTGCTACATACATAATTGGTATTCACATT
126 CTTG-AGCAACAAATAAATTAACTCATTCAACCGCTTTGCTACAT--AT-ATTGGTATTCACATT
68693093 TTAATGA-TTTATTACATAAGGAATGGCATGGTAAAATTTTTATCTTGCTACCTTGTGTTCTTAG
187 TTAATGATTTTA-TACAT-AGGAATGGCATGGTAAAATTTTTATCTTGCTACCTTGTGTTCTTAG
68693157 CTATTCGGCTAATAACCTTATGCAATTACCATACTTCAATAATCTAATCACACATGCATATGCAT
250 CTATTCGGCTAATAACCTTATGCAATTACCATACTTCAAT-ATCTAATCACACATGCATATGCAT
68693222 ACTTGGACATTCGGCAATCACCTTGCTAATTTTATACTCAACATCACATAAGCTCCCAAGTGATG
314 ACTTGGACATTCGGCAATCACCTTGCTAATTTTATACTCAACATCACATAAGCTCCCAAGTGATG
68693287 GCCGAATATGTATATCTATACTATCACCTATAATTCCTCAAATCACAACATTTCATCTCATGAAC
379 GCCGAATATGTATATCTATACTATCACCTATAATTCCTCAAATCACAACATTTCATCTCATGAAC
68693352 ACTTGACCCATTTCTCAC-AAAAATGAAACAACAACTAAAATGAACATCCCATTTTTATCCCATA
444 ACTTGACCCATTTCTCACAAAAAATGAAACAACAACTAAAATGAACATCCCATTTTTATCCCATA
68693416 TAGCCGATTGCTTCATTTGTTACCCAACTAACAATTCAACAATTTCAACCTCATTACAACCTCTA
509 TAGCCGATTGCTTCATTTGTTACCCAACTAACAATTCAACAATTTCAACCTCATTACAACCTCTA
68693481 CCTATTCAATATAACATGAACACAATCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCA
574 CCTATTCAATATAACATGAACACAATCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCA
68693546 TTTTAACCTCAACTT
639 TTTTAACCTCAACTT
68693561 TCAAGTTAAA
Statistics
Matches: 646, Mismatches: 1, Indels: 21
0.97 0.00 0.03
Matches are distributed among these distances:
655 25 0.04
656 26 0.04
657 12 0.02
658 27 0.04
659 277 0.43
660 183 0.28
661 96 0.15
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (653 bp):
GACATTATGACTATTTAAATCAATAATATATGCTTAATGACTTACCTTGTGTTGGGTAAAATAAC
TCCAAGTCGACTACTCGATGATCTTCGATTTCCCCTTGTTGGACGCCTCTCCTTTAGGATCTTGA
GCAACAAATAAATTAACTCATTCAACCGCTTTGCTACATATATTGGTATTCACATTTTAATGATT
TTATACATAGGAATGGCATGGTAAAATTTTTATCTTGCTACCTTGTGTTCTTAGCTATTCGGCTA
ATAACCTTATGCAATTACCATACTTCAATATCTAATCACACATGCATATGCATACTTGGACATTC
GGCAATCACCTTGCTAATTTTATACTCAACATCACATAAGCTCCCAAGTGATGGCCGAATATGTA
TATCTATACTATCACCTATAATTCCTCAAATCACAACATTTCATCTCATGAACACTTGACCCATT
TCTCACAAAAAATGAAACAACAACTAAAATGAACATCCCATTTTTATCCCATATAGCCGATTGCT
TCATTTGTTACCCAACTAACAATTCAACAATTTCAACCTCATTACAACCTCTACCTATTCAATAT
AACATGAACACAATCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCATTTTAACCTCAA
CTT
Found at i:68694550 original size:817 final size:818
Alignment explanation
Indices: 68693181--68694817 Score: 3203
Period size: 817 Copynumber: 2.0 Consensus size: 818
68693171 ACCTTATGCA
68693181 ATTACCATACTTCAATAATCTAATCACACATGCATATGCATACTTGGACATTCGGCAATCACCTT
1 ATTACCATACTTCAATAATCTAATCACACATGCATATGCATACTTGGACATTCGGCAATCACCTT
68693246 GCTAATTTTATACTCAACATCACATAAGCTCCCAAGTGATGGCCGAATATGTATATCTATACTAT
66 GCTAATTTTATACTCAACATCACATAAGCTCCCAAGTGATGGCCGAATATGTATATCTATACTAT
68693311 CACCTATAATTCCTCAAATCACAACATTTCATCTCATGAACACTTGACCCATTTCTCACAAAAAT
131 CACCTATAATTCCTCAAATCACAACATTTCATCTCATGAACACTTGACCCATTTCTCACAAAAAT
68693376 GAAACAACAACTAAAATGAACATCCCATTTTTATCCCATATAGCCGATTGCTTCATTTGTTACCC
196 GAAACAACAACTAAAATGAACATCCCATTTTTATCCCATATAGCCGATTGCTTCATTTGTTACCC
68693441 AACTAACAATTCAACAATTTCAACCTCATTACAACCTCTACCTATTCAATATAACATGAACACAA
261 AACTAACAATTCAACAATTTCAACCTCATTACAACCTCTACCTATTCAATATAACATGAACACAA
68693506 TCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCATTTTAACCTCAACTTTCAAGTTAAA
326 TCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCATTTTAACCTCAACTTTCAAGTTAAA
68693571 AGAAATTAACCACTCACCATCTCCTACATTACTATCCATTTTAATGACATTAACACATCTACTAA
391 AGAAATTAACCACTCACCATCTCCTACATTACTATCCATTTTAATGACATTAACACATCTACTAA
68693636 GAGTTTCAAACTTCTTGGCCGAATTTCAACCCCAAAATCCTAAGTCTAATCTATAGGATGAGTAG
456 GAGTTTCAAACTTCTTGGCCGAATTTCAACCCCAAAATCCTAAGTCTAATCTATAGGATGAGTAG
68693701 AATTGGAACTAACCATCTCAAACATGCATAGATTTTCAACAATCATTCAATACATACCTCATTCT
521 AATTGGAACTAACCATCTCAAACATGCATAGATTTTCAACAATCATTCAATACATACCTCATTCT
68693766 AGCCATCTTCCAAGCCAAAATCAAATAACCAAGTCTCCCTTTCTTCTCCTCACTCACGGCAATTG
586 AGCCATCTTCCAAGCCAAAATCAAATAACCAAGTCTCCCTTTCTTCTCCTCACTCACGGCAATTG
68693831 CCAAGAAAAAAAAAGATGACCACTCCCTCTTCCCTCCTTATTTTATTCACCTTTTTCCTTTTTTA
651 CCAAG-AAAAAAAAGATGACCACTCCCTCTTCCCTCCTTATTTTATTCACCTTTTTCCTTTTTTA
68693896 ATTCCTTTTTATTTTAATTGTTAACTAAACAAAACATATTAAATTAGAATAAGTGGAGCTCCATC
715 ATTCC-TTTTATTTTAATTGTTAACTAAACAAAACATATTAAATTAGAATAAGTGGAGCTCCATC
68693961 ACCCCTTGGCCGGCCACTCT-CTTCTTTTGGGTAAATTGAC
779 A-CCCTTGGCCGGCCACTCTGCTTCTTTTGGGTAAATTGAC
68694001 ATTACCATACCTTCAATAATCTAATCACACATGCATATGCATACTTGGACATTCGGCAATCACCT
1 ATTACCATA-CTTCAATAATCTAATCACACATGCATATGCATACTTGGACATTCGGCAATCACCT
68694066 TGCTAATTTTATACTCAACATCACATAAGCTCCCAAGTGAT-GCCGAATATGTATATCTATACTA
65 TGCTAATTTTATACTCAACATCACATAAGCTCCCAAGTGATGGCCGAATATGTATATCTATACTA
68694130 TCACCTATAATTCCTCAAATCACAACATTTCATCTCATGAACACTTGACCCATTTCTCACAAAAA
130 TCACCTATAATTCCTCAAATCACAACATTTCATCTCATGAACACTTGACCCATTTCTCACAAAAA
68694195 TGAAACAACAACTAAAATGAACAT-CCATTTTTATCCCATATAGCCGATTGCTTCATTTGTTACC
195 TGAAACAACAACTAAAATGAACATCCCATTTTTATCCCATATAGCCGATTGCTTCATTTGTTACC
68694259 CAACTAACAATTCAACAATTTCAACCTCATTACAACCTCTACCTATTCAATATAACATGAACACA
260 CAACTAACAATTCAACAATTTCAACCTCATTACAACCTCTACCTATTCAATATAACATGAACACA
68694324 ATCCTCCACCCCT-AAGTAGATTCGGCAATCACTTAA-CCATTTTAACCTCAACTTTCAAGTTAA
325 ATCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCATTTTAACCTCAACTTTCAAGTTAA
68694387 AAGAAATTAACCACTCACCATCTCCTACATTACTATCCATTTTAATGACATTAACACATCTACTA
390 AAGAAATTAACCACTCACCATCTCCTACATTACTATCCATTTTAATGACATTAACACATCTACTA
68694452 AGAGTTTCAAACTTCTTGGCCGAATTTCAACCCCAAAATCCTAAGTCTAATCTATAGGATGAGTA
455 AGAGTTTCAAACTTCTTGGCCGAATTTCAACCCCAAAATCCTAAGTCTAATCTATAGGATGAGTA
68694517 GAATTGGAACTAACCATCTCAAACATGCATAGATTTTCAACAATCATTCAATACATACCTCATTC
520 GAATTGGAACTAACCATCTCAAACATGCATAGATTTTCAACAATCATTCAATACATACCTCATTC
68694582 TAGCCATCTTCCAAGCCAAAATCAAATAACCAAGTCTCCCTTTCTTCTCCTCACTCACGGCAATT
585 TAGCCATCTTCCAAGCCAAAATCAAATAACCAAGTCTCCCTTTCTTCTCCTCACTCACGGCAATT
68694647 GCCAAGAAAAAAAAGATGACCACTCCCTCTTCCCTCCTTATTTTATTCACCTTTTTCCTTTTTTA
650 GCCAAGAAAAAAAAGATGACCACTCCCTCTTCCCTCCTTATTTTATTCACCTTTTTCCTTTTTTA
68694712 ATTCCTTTTATTTTAATTGTTAACTAAACAAAACATATTAAATTAGAATAAGTGGAGCTCCATCA
715 ATTCCTTTTATTTTAATTGTTAACTAAACAAAACATATTAAATTAGAATAAGTGGAGCTCCATCA
68694777 CCCTTGGCCGGCCACTCTGCTTCTTTTGGGTAAATTGAC
780 CCCTTGGCCGGCCACTCTGCTTCTTTTGGGTAAATTGAC
68694816 AT
1 AT
68694818 GCAAAACCAC
Statistics
Matches: 815, Mismatches: 0, Indels: 9
0.99 0.00 0.01
Matches are distributed among these distances:
814 18 0.02
815 82 0.10
816 64 0.08
817 293 0.36
818 23 0.03
819 118 0.14
820 121 0.15
821 96 0.12
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (818 bp):
ATTACCATACTTCAATAATCTAATCACACATGCATATGCATACTTGGACATTCGGCAATCACCTT
GCTAATTTTATACTCAACATCACATAAGCTCCCAAGTGATGGCCGAATATGTATATCTATACTAT
CACCTATAATTCCTCAAATCACAACATTTCATCTCATGAACACTTGACCCATTTCTCACAAAAAT
GAAACAACAACTAAAATGAACATCCCATTTTTATCCCATATAGCCGATTGCTTCATTTGTTACCC
AACTAACAATTCAACAATTTCAACCTCATTACAACCTCTACCTATTCAATATAACATGAACACAA
TCCTCCACCCCTAAAGTAGATTCGGCAATCACTTAACCCATTTTAACCTCAACTTTCAAGTTAAA
AGAAATTAACCACTCACCATCTCCTACATTACTATCCATTTTAATGACATTAACACATCTACTAA
GAGTTTCAAACTTCTTGGCCGAATTTCAACCCCAAAATCCTAAGTCTAATCTATAGGATGAGTAG
AATTGGAACTAACCATCTCAAACATGCATAGATTTTCAACAATCATTCAATACATACCTCATTCT
AGCCATCTTCCAAGCCAAAATCAAATAACCAAGTCTCCCTTTCTTCTCCTCACTCACGGCAATTG
CCAAGAAAAAAAAGATGACCACTCCCTCTTCCCTCCTTATTTTATTCACCTTTTTCCTTTTTTAA
TTCCTTTTATTTTAATTGTTAACTAAACAAAACATATTAAATTAGAATAAGTGGAGCTCCATCAC
CCTTGGCCGGCCACTCTGCTTCTTTTGGGTAAATTGAC
Found at i:68708787 original size:49 final size:49
Alignment explanation
Indices: 68708566--68709067 Score: 775
Period size: 47 Copynumber: 10.6 Consensus size: 49
68708556 GCCCTTCGGA
* * * * * *
68708566 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68708613 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68708660 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68708707 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68708754 CTTATCACATATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68708802 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68708849 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68708896 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68708945 CTTATCACATATATATATACTTTCACATT-ATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68708993 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68709042 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
68709068 CACAATTATC
Statistics
Matches: 428, Mismatches: 19, Indels: 16
0.92 0.04 0.03
Matches are distributed among these distances:
46 28 0.07
47 204 0.48
48 65 0.15
49 131 0.31
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68708839 original size:142 final size:143
Alignment explanation
Indices: 68708566--68709067 Score: 800
Period size: 142 Copynumber: 3.5 Consensus size: 143
68708556 GCCCTTCGGA
* * * * * * * * *
68708566 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
68708629 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
68708694 TCGGCTATTAGGC
131 TCGGCCATTAGGC
68708707 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
68708772 ACTTTCACATTCATCACAT-GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
68708836 TCGGCCATTAGGC
131 TCGGCCATTAGGC
68708849 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
68708914 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACTTTCACATT-ATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
68708978 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
*
68708993 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
68709058 ACA--TTCACAT
64 ACACTTTCACAT
68709068 CACAATTATC
Statistics
Matches: 339, Mismatches: 15, Indels: 11
0.93 0.04 0.03
Matches are distributed among these distances:
141 46 0.14
142 139 0.41
143 45 0.13
144 34 0.10
145 18 0.05
146 57 0.17
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:68713449 original size:28 final size:28
Alignment explanation
Indices: 68713351--68713452 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
68713341 ATAGTAAGTC
*
68713351 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68713379 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
68713408 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
68713436 TGTACACTTAGTGCTAT
1 CGCACACTTAGTGCTAT
68713453 GCAATTTAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
28 41 0.60
29 27 0.40
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68713471 original size:57 final size:57
Alignment explanation
Indices: 68713353--68713478 Score: 164
Period size: 57 Copynumber: 2.2 Consensus size: 57
68713343 AGTAAGTCCG
* * *
68713353 CACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCCA
* * * * *
68713410 CACACTTAGTGCTATATAATCAAACTTGTACACTTAGTGCTATGCA-ATTTAAACCCA
1 CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAACCCA
68713467 CACACTTAGTGC
1 CACACTTAGTGC
68713479 CAATCTCATG
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 57 0.95
58 3 0.05
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (57 bp):
CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACCCA
Found at i:68724412 original size:21 final size:22
Alignment explanation
Indices: 68724372--68724412 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
68724362 GTCGAATTGG
68724372 CCACACGGGCGTGTTGCCCTTT
1 CCACACGGGCGTGTTGCCCTTT
* *
68724394 CCACATGGGTGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
68724413 ATTTCTAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.10, C:0.34, G:0.29, T:0.27
Consensus pattern (22 bp):
CCACACGGGCGTGTTGCCCTTT
Found at i:68730481 original size:79 final size:82
Alignment explanation
Indices: 68730342--68730524 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 82
68730332 TCGAATGATG
* *
68730342 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
*
68730406 TGTGCGAGTTACTA-AT
66 TGTGCGAGTTACTATAA
* * * **
68730422 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
68730484 TTGTGCGAGTTACTATAA
65 TTGTGCGAGTTACTATAA
*
68730502 T-CGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68730525 TGAACGAGTT
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 31 0.34
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATAA
Found at i:68730534 original size:40 final size:39
Alignment explanation
Indices: 68730344--68730526 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 39
68730334 GAATGATGTC
* * *
68730344 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAT
* *
68730383 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 -CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
68730423 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
68730462 CTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 C-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
*
68730503 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
68730527 AACGAGTTGC
Statistics
Matches: 125, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.26
40 79 0.63
41 12 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:68730548 original size:79 final size:79
Alignment explanation
Indices: 68730395--68730549 Score: 206
Period size: 79 Copynumber: 2.0 Consensus size: 79
68730385 GGACTAAGAT
* **
68730395 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
68730460 ATCTGGGTTAAGTC
66 ATCTCGGTTAAGTC
* * *
68730474 CCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTACT
*
68730538 ACATC-CGGTTAA
64 AAATCTCGGTTAA
68730550 ATTTCGAAGG
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 39 0.59
80 27 0.41
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCTCGGTTAAGTC
Found at i:68732529 original size:25 final size:25
Alignment explanation
Indices: 68732500--68732547 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68732490 TTATAACATG
* * *
68732500 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
68732525 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
68732548 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:68732650 original size:20 final size:20
Alignment explanation
Indices: 68732584--68732650 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
68732574 ATTTTGATAA
* *
68732584 ACATGGTATGTATGATATGG
1 ACATGATATGTATGATATGC
*
68732604 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
68732624 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
68732644 ACGTGAT
1 ACATGAT
68732651 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:68732726 original size:24 final size:24
Alignment explanation
Indices: 68732700--68732818 Score: 195
Period size: 24 Copynumber: 5.0 Consensus size: 24
68732690 GAGGAAGTGC
*
68732700 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATA
68732724 AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATA
68732748 AAAAGGGCTTATG-CCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATA
* *
68732771 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATA
*
68732795 GAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATA
68732819 TGATAAAGTA
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
23 23 0.26
24 65 0.74
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATA
Found at i:68732777 original size:47 final size:48
Alignment explanation
Indices: 68732700--68732818 Score: 195
Period size: 47 Copynumber: 2.5 Consensus size: 48
68732690 GAGGAAGTGC
* *
68732700 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAATTATA
*
68732748 AAAAGGGCTTATG-CCCAGTTATAAAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAATTATA
*
68732795 GAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATA
68732819 TGATAAAGTA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
47 43 0.65
48 23 0.35
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAATTATA
Found at i:68740768 original size:25 final size:25
Alignment explanation
Indices: 68740739--68740786 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
68740729 TTATAACATG
* *
68740739 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
68740764 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
68740787 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:68740890 original size:20 final size:20
Alignment explanation
Indices: 68740824--68740884 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
68740814 TTTTTGATAA
*
68740824 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
68740844 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
68740864 CCATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
68740884 A
1 A
68740885 TGTGATGTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:68740966 original size:24 final size:24
Alignment explanation
Indices: 68740940--68741066 Score: 200
Period size: 24 Copynumber: 5.3 Consensus size: 24
68740930 GAGGAAGTGC
* *
68740940 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATA
*
68740964 AAAAGGGCTTATGCCCTAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATA
*
68740988 AAAAGGGCGTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATA
*
68741012 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATA
*
68741036 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATA
68741060 AAAAGGG
1 AAAAGGG
68741067 GCTAGGCCTC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 98 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATA
Found at i:68744087 original size:50 final size:50
Alignment explanation
Indices: 68744016--68744397 Score: 329
Period size: 50 Copynumber: 7.6 Consensus size: 50
68744006 AGACAGTTTC
68744016 AGGTCA-AGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACA-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
* * * *
68744066 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCCGATAGTTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TT
* * * * * * ** *
68744117 CGATCACTTGTGTAGTATTAAGTGCAGGCTAATAAGTGTAATAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
* * * * * * ** *
68744167 AGATCACGTGTGTAGTACTAAGTTCAAGCCACAACGTGTACTGGATTGAT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
** * * ** * *
68744217 AGGTTGCATGTGTTGTACTAAGTGCAGGCTACTATGCATACCCG-TTAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTT
* * * * * *
68744268 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGAT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
* * * *
68744318 AAGTCACCTGT-TCAGTACTAAGTGCAGGCTACTACATGTACCAGATTGAT
1 AGGTCACATGTGT-AGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
*
68744368 AGGTCGCATGTGTAGTACTAAGTGCAGGCT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCT
68744398 GCTATACGTA
Statistics
Matches: 257, Mismatches: 68, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
49 3 0.01
50 178 0.69
51 75 0.29
52 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
Found at i:68744297 original size:151 final size:151
Alignment explanation
Indices: 68744018--68744402 Score: 508
Period size: 151 Copynumber: 2.5 Consensus size: 151
68744008 ACAGTTTCAG
* * *
68744018 GTCAAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
** * *
68744083 CTAAGTGCAGGCTACTATGAGTACCCGATAGTTTCGATCACTTGTGTAGTATTAAGTGCAGGCTA
66 CTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
*
68744148 ATAAGTGTAAT-AGATGG-TTA
131 ATAAGTGT-ATCAGATGGATAA
* * * * ** * *
68744168 GATCACGTGTGTAGTACTAAGTTCAAGCCACAACGTGTACTGGATTGATAGGTTGCATGTGTTGT
1 G-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
68744233 ACTAAGTGCAGGCTACTATGCA-TACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGC
65 ACTAAGTGCAGGCTACTATG-AGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGC
* *
68744297 TACTACGTGTATCAGATGGATAA
129 TAATAAGTGTATCAGATGGATAA
* *
68744320 GTCACCTGT-TCAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGT
1 GTCACGTGTGT-AGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
68744384 ACTAAGTGCAGGCTGCTAT
65 ACTAAGTGCAGGCTACTAT
68744403 ACGTACCAGA
Statistics
Matches: 200, Mismatches: 30, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
150 4 0.02
151 192 0.96
152 4 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (151 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
ATAAGTGTATCAGATGGATAA
Found at i:68745363 original size:180 final size:179
Alignment explanation
Indices: 68744977--68745332 Score: 464
Period size: 180 Copynumber: 2.0 Consensus size: 179
68744967 CCGAGATCTG
* *
68744977 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTATCGGACAATGAAATAGGTGTAT
1 TACCATGAGATAAATAA-TTTTAGTGAAGAAAGATCAGAACTATCGGACAATGAAATAGGTGTAA
*
68745042 CTTTAATGAAGAAACTGTACTAATTGACTAAACCAAAAATTATAAAAAAAATTATGGTAAGAATA
65 CTTTAATGAAGAAAATGTACTAATTGACTAAACCAAAAATTATAAAAAAAATTATGGTAAGAATA
*** ** **
68745107 TATGTGAGTCTAGTTTCTGGGAAAATTATTGGCTCTTAAGTTGGAGTCCC
130 TATGTGAGTCTAGTTTCTAAAAAAATTAACGAATCTTAAGTTGGAGTCCC
* * * * * *
68745157 TACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTTGGATAGTGAAATAGGTGTAA
1 TACCATGAGATAAATAA-TTTTAGTGAAGAAAGATCAGAACTATCGGACAATGAAATAGGTGTAA
* * * * **
68745222 CTTTAATGAATAAAATGTACTAATTGGA-TAAATCAAAAATTCT-GAAAATTTTATGGTAAGAAT
65 CTTTAATGAAGAAAATGTACTAATT-GACTAAACCAAAAATTATAAAAAAAATTATGGTAAGAAT
*
68745285 ATATGTGAGTCTAGTTTCTAAAAAAATTAACGAATCTTAATTTGGAGT
129 ATATGTGAGTCTAGTTTCTAAAAAAATTAACGAATCTTAAGTTGGAGT
68745333 TCCGTAGGTC
Statistics
Matches: 152, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
179 57 0.38
180 93 0.61
181 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (179 bp):
TACCATGAGATAAATAATTTTAGTGAAGAAAGATCAGAACTATCGGACAATGAAATAGGTGTAAC
TTTAATGAAGAAAATGTACTAATTGACTAAACCAAAAATTATAAAAAAAATTATGGTAAGAATAT
ATGTGAGTCTAGTTTCTAAAAAAATTAACGAATCTTAAGTTGGAGTCCC
Found at i:68749259 original size:93 final size:93
Alignment explanation
Indices: 68749100--68749272 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
68749090 CGCCCATAAG
* * *
68749100 CGAACTTGGACTCAACACAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTTGAACTCAACACAACGAGCTCAGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
68749165 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * *
68749193 CGAACTTGAACTCAACTCAACGAGTTC-GGACGCTCTCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTTGAACTCAACACAACGAGCTCAGG-CGCTCGCATCCATAAGTGAACTCGGACTCAACTC
*
68749257 AACGAGTTCGGATGCC
65 AACGAGCTCGGATGCC
68749273 CAAATATCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTTGAACTCAACACAACGAGCTCAGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:68749261 original size:46 final size:46
Alignment explanation
Indices: 68749093--68749268 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
68749083 TGTAACCCGC
* * * *
68749093 CCATAAGCGAACTTGGACTCAACACAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTTGGACTCAACTCAACGAGCTC-GGACGCTCTCAT
*
68749139 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGATGC-CT-AGTT
1 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGACGCTCTCA--T
* *** * *
68749185 ACATCTCTCGAACTTGAACTCAACTCAACGAGTTCGGACGCTCTCAT
1 CCATAAGT-GAACTTGGACTCAACTCAACGAGCTCGGACGCTCTCAT
* *
68749232 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGA
68749269 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
44 1 0.01
45 3 0.03
46 65 0.61
47 34 0.32
48 2 0.02
49 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGACGCTCTCAT
Found at i:68755457 original size:9 final size:9
Alignment explanation
Indices: 68755443--68755483 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
68755433 TGGGATTAAA
68755443 TTGTAAATT
1 TTGTAAATT
68755452 TTGTAAA--
1 TTGTAAATT
68755459 TTGTAAATT
1 TTGTAAATT
68755468 TTGTAAATT
1 TTGTAAATT
68755477 TTGTAAA
1 TTGTAAA
68755484 ATGCATATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 7 0.23
9 23 0.77
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (9 bp):
TTGTAAATT
Found at i:68755460 original size:16 final size:16
Alignment explanation
Indices: 68755439--68755476 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
68755429 TATTTGGGAT
68755439 TAAATTGTAAATTTTG
1 TAAATTGTAAATTTTG
68755455 TAAATTGTAAATTTTG
1 TAAATTGTAAATTTTG
68755471 TAAATT
1 TAAATT
68755477 TTGTAAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (16 bp):
TAAATTGTAAATTTTG
Found at i:68760441 original size:22 final size:23
Alignment explanation
Indices: 68760416--68760458 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
68760406 TATCCACACA
*
68760416 TGGAGTGTAG-GGCTGGACGGAG
1 TGGAGTGTAGAGGATGGACGGAG
68760438 TGGAGTGTAGAGGATGGACGG
1 TGGAGTGTAGAGGATGGACGG
68760459 GTAGGACTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.07, G:0.53, T:0.19
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGACGGAG
Found at i:68775767 original size:93 final size:93
Alignment explanation
Indices: 68775658--68775828 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
68775648 GCCCCAAAGT
* * *
68775658 GAACTCGGACTGAACTCAAAGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68775723 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
68775751 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68775816 CGAGTTCGGATGC
66 CGAGTTCGGATGC
68775829 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:68775825 original size:46 final size:46
Alignment explanation
Indices: 68775654--68775825 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
68775644 ACCCGCCCCA
* * * * *
68775654 AAGTGAACTCGGACTGAACTCAAAGAGCTCGGGCGTTCGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
* *
68775700 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TT
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT
* *
68775748 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
68775793 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68775826 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 58 0.56
47 29 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:68778455 original size:42 final size:43
Alignment explanation
Indices: 68778352--68778507 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 43
68778342 TGTGTTATCG
* * * * *
68778352 TGTAAGACCACGTCTGGGACGTTAGCATCGACT-TGTGATTTACA
1 TGTAAGACCATGTCTGGGACATTGGCATC-AATATATGATTT-CA
* *
68778396 TGTAAGACCATGTCTGGGACATTGGCATC-GTATATGATTTCT
1 TGTAAGACCATGTCTGGGACATTGGCATCAATATATGATTTCA
* * * * * *
68778438 TGTAAAACCTTGTCTGGGACAGTGGCATCAATGTTTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCAATATATGATTTCA
*
68778481 TGTAAGACCACGTCTGGGACATTGGCA
1 TGTAAGACCATGTCTGGGACATTGGCA
68778508 GTGTACGAGC
Statistics
Matches: 92, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
42 28 0.30
43 38 0.41
44 26 0.28
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCAATATATGATTTCA
Found at i:68778711 original size:19 final size:19
Alignment explanation
Indices: 68778689--68778726 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
68778679 TATGACAACG
68778689 AATGATATGA-ATGTATATA
1 AATGA-ATGATATGTATATA
*
68778708 AATGAATGATGTGTATATA
1 AATGAATGATATGTATATA
68778727 TGCTCGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.37
Consensus pattern (19 bp):
AATGAATGATATGTATATA
Found at i:68790595 original size:24 final size:24
Alignment explanation
Indices: 68790566--68790615 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
68790556 ATTCATTTAT
68790566 TTCGCATGTTAGTCCCTCAAATTA
1 TTCGCATGTTAGTCCCTCAAATTA
68790590 TTCGCATGTTAGTCCCTCAAATTA
1 TTCGCATGTTAGTCCCTCAAATTA
68790614 TT
1 TT
68790616 ATTTTTGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (24 bp):
TTCGCATGTTAGTCCCTCAAATTA
Found at i:68797626 original size:43 final size:42
Alignment explanation
Indices: 68797578--68797676 Score: 101
Period size: 42 Copynumber: 2.3 Consensus size: 42
68797568 TCCTATACGT
* *
68797578 GGTCTTACATGTAATCAAATATCGGTGCC-ACTATCCCAGGCAG
1 GGTCTTACATGTAATCAAATAT-GATGCCGA-TATCCCAGACAG
* * * * * *
68797621 GGTCTTAAATGAAATTAAATATGATGCCGATGTCCTAGACAT
1 GGTCTTACATGTAATCAAATATGATGCCGATATCCCAGACAG
68797663 GGTCTTACATGTAA
1 GGTCTTACATGTAA
68797677 ATCATAAGTA
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
42 25 0.56
43 20 0.44
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATATGATGCCGATATCCCAGACAG
Found at i:68800302 original size:43 final size:42
Alignment explanation
Indices: 68800239--68800351 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 42
68800229 TACCGTACCA
* * *
68800239 ATGCCATAACCCAGAGATGGTCTTATATGTAA-TCTCGTATCG
1 ATGCCATAACCCAGATATGGTCTTACACG-AAGTCTCGTATCG
* *
68800281 ATGCCAATAACCTAGCTATGGTCTTACACGAAGTCTCGTATCG
1 ATGCC-ATAACCCAGATATGGTCTTACACGAAGTCTCGTATCG
*
68800324 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATAACCCAGATATGGTCTTACAC
68800352 ATAATCTCAG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 27 0.44
43 34 0.56
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGCCATAACCCAGATATGGTCTTACACGAAGTCTCGTATCG
Found at i:68800421 original size:16 final size:16
Alignment explanation
Indices: 68800396--68800441 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
68800386 ACTGGAATAG
68800396 AATAGGGCTGTAATGA
1 AATAGGGCTGTAATGA
* *
68800412 AATAGAGCTGTAATGG
1 AATAGGGCTGTAATGA
68800428 AATAGGGCTGTAAT
1 AATAGGGCTGTAAT
68800442 TAGTAATTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.37, C:0.07, G:0.30, T:0.26
Consensus pattern (16 bp):
AATAGGGCTGTAATGA
Found at i:68805624 original size:18 final size:18
Alignment explanation
Indices: 68805579--68805618 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
68805569 TGCCCATTGT
68805579 AGTAACAGTAAACAGTAC
1 AGTAACAGTAAACAGTAC
*
68805597 AGTAACAGTAATCAGTAC
1 AGTAACAGTAAACAGTAC
68805615 AGTA
1 AGTA
68805619 GTAGTACAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.20
Consensus pattern (18 bp):
AGTAACAGTAAACAGTAC
Found at i:68806015 original size:27 final size:27
Alignment explanation
Indices: 68805976--68806132 Score: 174
Period size: 27 Copynumber: 5.9 Consensus size: 27
68805966 ATCTATACAT
* * *
68805976 CACAT-AGGACAAAACAATCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
68806002 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
68806029 CACATGAGGGTAAAACAGTCGTTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
68806056 CACATAA-GGCAAAATAGTCTTTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
68806082 CTCATGAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
68806109 CCCATAAGGGCAAAACAGTCATTT
1 CACATAAGGGCAAAACAGTCATTT
68806133 CATTAAATTA
Statistics
Matches: 109, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
26 25 0.23
27 84 0.77
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:68806073 original size:53 final size:54
Alignment explanation
Indices: 68805976--68806132 Score: 201
Period size: 53 Copynumber: 2.9 Consensus size: 54
68805966 ATCTATACAT
* * * *
68805976 CACAT-AGGACAAAACAATCATCTTACCATATAAGGGCAAAATAGTCATTTTAC
1 CACATGAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTAC
* * *
68806029 CACATGAGGGTAAAACAGTCGTTTTACCACATAA-GGCAAAATAGTCTTTTTAC
1 CACATGAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTAC
* * * *
68806082 CTCATGAGGGCAAAATAGTCATTTTACCCCATAAGGGCAAAACAGTCATTT
1 CACATGAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTT
68806133 CATTAAATTA
Statistics
Matches: 88, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
53 52 0.59
54 36 0.41
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.26
Consensus pattern (54 bp):
CACATGAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTAC
Found at i:68806836 original size:18 final size:17
Alignment explanation
Indices: 68806798--68806837 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
68806788 ACCCCCGAGA
*
68806798 ATTTTCTAAACATGGTT
1 ATTTTCTAAACATGATT
68806815 ATTTTCTAAACATGCATT
1 ATTTTCTAAACATG-ATT
68806833 ATTTT
1 ATTTT
68806838 ACCTAATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.30, C:0.12, G:0.07, T:0.50
Consensus pattern (17 bp):
ATTTTCTAAACATGATT
Found at i:68812913 original size:27 final size:26
Alignment explanation
Indices: 68812842--68812980 Score: 95
Period size: 26 Copynumber: 5.3 Consensus size: 26
68812832 CCCGCATTCC
* * *
68812842 AAAATTAACGAAA-ACCCTCGATTTCA
1 AAAATTATCGAAATACCCTAG-TTTAA
68812868 AAAATT-TCCGAAATACCCTAGTTTAA
1 AAAATTAT-CGAAATACCCTAGTTTAA
* *
68812894 AAAATTATCGAAATACCCCTGGTTTGA
1 AAAATTATCGAAATA-CCCTAGTTTAA
* * *
68812921 AAAATTA-CAGAAATACCCCAATTTAG
1 AAAATTATC-GAAATACCCTAGTTTAA
* * * * *
68812947 AAAATTACCAAAATAGCCCTGGTTCAT
1 AAAATTATCGAAATA-CCCTAGTTTAA
68812974 AAAATTA
1 AAAATTA
68812981 CTAAAATACC
Statistics
Matches: 90, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
26 47 0.52
27 43 0.48
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.27
Consensus pattern (26 bp):
AAAATTATCGAAATACCCTAGTTTAA
Found at i:68812934 original size:53 final size:52
Alignment explanation
Indices: 68812842--68812990 Score: 142
Period size: 53 Copynumber: 2.8 Consensus size: 52
68812832 CCCGCATTCC
* * * * *
68812842 AAAATTAACGAAA-ACCCTCGATTTCAAAAATTTCCGAAATACCCTAGTTTAA
1 AAAATTAACGAAATACCCT-GGTTTCAAAAATTACAGAAATACCCCAATTTAA
* * *
68812894 AAAATTATCGAAATACCCCTGGTTTGAAAAATTACAGAAATACCCCAATTTAG
1 AAAATTAACGAAATA-CCCTGGTTTCAAAAATTACAGAAATACCCCAATTTAA
* *
68812947 AAAATTACCAAAATAGCCCTGG-TTCATAAAATTACTA-AAATACC
1 AAAATTAACGAAATA-CCCTGGTTTCA-AAAATTAC-AGAAATACC
68812991 TTGGTAGTGT
Statistics
Matches: 81, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
52 15 0.19
53 61 0.75
54 5 0.06
ACGTcount: A:0.45, C:0.20, G:0.09, T:0.26
Consensus pattern (52 bp):
AAAATTAACGAAATACCCTGGTTTCAAAAATTACAGAAATACCCCAATTTAA
Found at i:68813015 original size:27 final size:26
Alignment explanation
Indices: 68812985--68813067 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 26
68812975 AAATTACTAA
68812985 AATACCTTGGTA-GTGTAAAAAGACCGT
1 AATACCTT-GTATG-GTAAAAAGACCGT
*
68813012 AATACCCTTGTATGGTAAAATGACCGT
1 AATA-CCTTGTATGGTAAAAAGACCGT
* * * * *
68813039 AATACCCTATAGGGTAAAATGACTGT
1 AATACCTTGTATGGTAAAAAGACCGT
68813065 AAT
1 AAT
68813068 GCTCCTATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
26 21 0.43
27 23 0.47
28 5 0.10
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (26 bp):
AATACCTTGTATGGTAAAAAGACCGT
Found at i:68813054 original size:26 final size:26
Alignment explanation
Indices: 68812999--68813081 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
68812989 CCTTGGTAGT
* *
68812999 GTAAAAAGACCGTAATACCCTTGTATG
1 GTAAAATGACCGTAATACCC-TATATG
*
68813026 GTAAAATGACCGTAATACCCTATAGG
1 GTAAAATGACCGTAATACCCTATATG
* *
68813052 GTAAAATGACTGTAATGCTCCTATATG
1 GTAAAATGACCGTAATAC-CCTATATG
68813079 GTA
1 GTA
68813082 CAAAGACGAT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
26 20 0.41
27 29 0.59
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (26 bp):
GTAAAATGACCGTAATACCCTATATG
Found at i:68818089 original size:1 final size:1
Alignment explanation
Indices: 68818085--68818120 Score: 54
Period size: 1 Copynumber: 36.0 Consensus size: 1
68818075 TTCTAGTTTC
* *
68818085 TTTTTTTTTTTGTTTTTTTTTTTTTTTTTGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
68818121 AGGTTGATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (1 bp):
T
Found at i:68818108 original size:16 final size:16
Alignment explanation
Indices: 68818080--68818120 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
68818070 ATTTTTTCTA
*
68818080 GTTTCTTTTTTTTTTT
1 GTTTTTTTTTTTTTTT
68818096 GTTTTTTTTTTTTTTT
1 GTTTTTTTTTTTTTTT
68818112 -TTGTTTTTT
1 GTT-TTTTTT
68818121 AGGTTGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 2 0.09
16 21 0.91
ACGTcount: A:0.00, C:0.02, G:0.07, T:0.90
Consensus pattern (16 bp):
GTTTTTTTTTTTTTTT
Found at i:68818110 original size:18 final size:18
Alignment explanation
Indices: 68818085--68818120 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
68818075 TTCTAGTTTC
68818085 TTTTTTTTTTTGTTTTTT
1 TTTTTTTTTTTGTTTTTT
68818103 TTTTTTTTTTTGTTTTTT
1 TTTTTTTTTTTGTTTTTT
68818121 AGGTTGATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (18 bp):
TTTTTTTTTTTGTTTTTT
Found at i:68824378 original size:40 final size:39
Alignment explanation
Indices: 68824294--68824516 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 39
68824284 TTGAATGATG
* * * *
68824294 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
68824334 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
68824374 TCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68824412 TCCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68824451 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68824492 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
68824517 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
38 35 0.21
39 37 0.23
40 82 0.50
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68824538 original size:79 final size:78
Alignment explanation
Indices: 68824294--68824549 Score: 234
Period size: 79 Copynumber: 3.3 Consensus size: 78
68824284 TTGAATGATG
* * * * * * * *
68824294 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-CCCGAAGGCATTT
** *
68824359 GTGCGAGAT-ACTAAT
64 GAACGAG-TGACTAAA
* * *
68824374 TCCGGGCTAAG-CCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGCCCGAAGGCATTTGT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTTGA
* *
68824438 GCGAGTTACTAAA
66 ACGAGTGACTAAA
*
68824451 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAG-CCCGAAGGCATT
*
68824515 TGAACGAG-GAGCTATA
63 TGAACGAGTGA-CTAAA
* *
68824531 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
68824550 TACGTGATTT
Statistics
Matches: 152, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
76 1 0.01
77 34 0.22
78 26 0.17
79 53 0.35
80 38 0.25
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTTGA
ACGAGTGACTAAA
Found at i:68826209 original size:27 final size:27
Alignment explanation
Indices: 68826179--68826383 Score: 139
Period size: 27 Copynumber: 7.6 Consensus size: 27
68826169 CCCAGATTGT
*
68826179 AAAATTACTGAAATACCCCCGATTTGA
1 AAAATTACCGAAATACCCCCGATTTGA
** * *
68826206 AAAATTGTCGAAATACTCCCAGA-TTGT
1 AAAATTACCGAAATAC-CCCCGATTTGA
* ** * * * *
68826233 AAAAGTATTGAAATACCCTCGGTTCGG
1 AAAATTACCGAAATACCCCCGATTTGA
68826260 AAAATTACCGAAATA-CCCCGATTT-A
1 AAAATTACCGAAATACCCCCGATTTGA
* * *
68826285 GAAAGTTATCGAAATACCCCC-AGTTTAA
1 -AAAATTACCGAAATACCCCCGA-TTTGA
* ** * *
68826313 AAAATTACCAAAATACCCATGGTTTGG
1 AAAATTACCGAAATACCCCCGATTTGA
* * * *
68826340 AAAATTACCAAAATACCTCCAATTTGG
1 AAAATTACCGAAATACCCCCGATTTGA
68826367 AAAATTACCGAAATACC
1 AAAATTACCGAAATACC
68826384 TTGGTAGTGT
Statistics
Matches: 135, Mismatches: 36, Indels: 14
0.73 0.19 0.08
Matches are distributed among these distances:
26 23 0.17
27 106 0.79
28 6 0.04
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.25
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCCGATTTGA
Found at i:68826264 original size:54 final size:53
Alignment explanation
Indices: 68826167--68826330 Score: 163
Period size: 54 Copynumber: 3.1 Consensus size: 53
68826157 GGTCGTTAAG
* * * **
68826167 ACCCCAGATTGTAAAATTACTGAAATACCCCCGATTTGAAAAATTGTCGAAAT
1 ACCCCAGATTGTAAAAGTATTGAAATACCCCCGATTCGAAAAATTACCGAAAT
* * *
68826220 ACTCCCAGATTGTAAAAGTATTGAAATACCCTCGGTTCGGAAAATTACCGAAAT
1 AC-CCCAGATTGTAAAAGTATTGAAATACCCCCGATTCGAAAAATTACCGAAAT
* ** *
68826274 ACCCC-GATT-TAGAAAGTTATCGAAATACCCCC-AGTTTAAAAAATTACCAAAAT
1 ACCCCAGATTGTA-AAAG-TATTGAAATACCCCCGA-TTCGAAAAATTACCGAAAT
68826327 ACCC
1 ACCC
68826331 ATGGTTTGGA
Statistics
Matches: 92, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
51 2 0.02
52 8 0.09
53 37 0.40
54 45 0.49
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.25
Consensus pattern (53 bp):
ACCCCAGATTGTAAAAGTATTGAAATACCCCCGATTCGAAAAATTACCGAAAT
Found at i:68826327 original size:80 final size:79
Alignment explanation
Indices: 68826179--68826383 Score: 214
Period size: 80 Copynumber: 2.5 Consensus size: 79
68826169 CCCAGATTGT
* * * ** ***
68826179 AAAATTACTGAAATACCCCCGATTTGAAAAATTGTCGAAATACTCCCAGATTGTAAAAGTATTGA
1 AAAATTACCGAAATA-CCCCGATTTG-AAAATTATCGAAATACCCCCAGATTAAAAAAGTACCAA
68826244 AATACCC-TCGGTTCGG
64 AATACCCAT-GGTTCGG
* * *
68826260 AAAATTACCGAAATACCCCGATTTAGAAAGTTATCGAAATACCCCCAGTTTAAAAAATTACCAAA
1 AAAATTACCGAAATACCCCGATTT-GAAAATTATCGAAATACCCCCAGATTAAAAAAGTACCAAA
*
68826325 ATACCCATGGTTTGG
65 ATACCCATGGTTCGG
* * *
68826340 AAAATTACCAAAATACCTCCAATTTGGAAAATTACCGAAATACC
1 AAAATTACCGAAATACC-CCGATTT-GAAAATTATCGAAATACC
68826384 TTGGTAGTGT
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
80 66 0.63
81 38 0.37
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.25
Consensus pattern (79 bp):
AAAATTACCGAAATACCCCGATTTGAAAATTATCGAAATACCCCCAGATTAAAAAAGTACCAAAA
TACCCATGGTTCGG
Found at i:68827231 original size:38 final size:38
Alignment explanation
Indices: 68827189--68827264 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
68827179 GTTCATCCTT
68827189 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
*
68827227 TTCATTTCTTTTGGCCGAAAATTCTAAGGAGGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
68827265 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:68828547 original size:40 final size:40
Alignment explanation
Indices: 68828453--68828597 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
68828443 TACTCGAATG
*
68828453 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
68828494 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
68828534 ATATCCGGGCTAAGTCCCGAAGGCATTTATGGTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
68828574 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
68828598 CTTGTCCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:68832773 original size:78 final size:79
Alignment explanation
Indices: 68832691--68832869 Score: 220
Period size: 78 Copynumber: 2.3 Consensus size: 79
68832681 ACCAGCTCGA
* * * ** * * * *
68832691 AGCCTGCGGGA-CTTTAGCCCGGACATATTTTGAGCACGTAGCCTGTGGACCTTAAGTCCGGATA
1 AGCCTGCGGGACCCTAAGCCCGGACATAATTCCAACACATAGCCTGCGGACCCTAAGTCCGGATA
*
68832755 TAATTCCAGTACAT
66 TAATTCCAGCACAT
* *
68832769 AGCCTGC-AGACCCTAAGTCCGGACATAATTCCAACACATAGCCTGCGGACCCTAAGTCCGGATA
1 AGCCTGCGGGACCCTAAGCCCGGACATAATTCCAACACATAGCCTGCGGACCCTAAGTCCGGATA
68832833 TAATTCCAGCACAT
66 TAATTCCAGCACAT
*
68832847 AGCCTGC-GGACCCTAAGTCCGGA
1 AGCCTGCGGGACCCTAAGCCCGGA
68832870 TACACATCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
77 2 0.02
78 85 0.98
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (79 bp):
AGCCTGCGGGACCCTAAGCCCGGACATAATTCCAACACATAGCCTGCGGACCCTAAGTCCGGATA
TAATTCCAGCACAT
Found at i:68832870 original size:39 final size:39
Alignment explanation
Indices: 68832723--68832871 Score: 235
Period size: 39 Copynumber: 3.8 Consensus size: 39
68832713 ACATATTTTG
* * *
68832723 AGCACGTAGCCTGTGGACCTTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
* * *
68832762 AGTACATAGCCTGCAGACCCTAAGTCCGGACATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
*
68832801 AACACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
68832840 AGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATA
68832872 CACATCAAAT
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 99 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
Found at i:68839917 original size:78 final size:78
Alignment explanation
Indices: 68839831--68839992 Score: 195
Period size: 78 Copynumber: 2.1 Consensus size: 78
68839821 GAATTTAAAC
* * * * *
68839831 CCGG-TATAATACCAGCTCGA-AGCCTACAGGA-CTTTAGCCCAGACATATTTCCAGCACGTAGC
1 CCGGATATAATACCAGCAC-ATAGCCTAC-GGACCCTAAGCCCAGACATAATTCCAGCACATAGC
*
68839893 CTGCGGACCTTAAGT
64 CTGCGGACCCTAAGT
* * * *
68839908 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGGATATAATACCAGCACATAGCCTACGGACCCTAAGCCCAGACATAATTCCAGCACATAGCCT
68839973 GCGGACCCTAAGT
66 GCGGACCCTAAGT
68839986 CCGGATA
1 CCGGATA
68839993 CACATCAAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
77 8 0.11
78 64 0.89
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (78 bp):
CCGGATATAATACCAGCACATAGCCTACGGACCCTAAGCCCAGACATAATTCCAGCACATAGCCT
GCGGACCCTAAGT
Found at i:68839922 original size:39 final size:39
Alignment explanation
Indices: 68839879--68839992 Score: 201
Period size: 39 Copynumber: 2.9 Consensus size: 39
68839869 CCAGACATAT
* *
68839879 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
68839918 TTCCAGCACATAGCCTACGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
68839957 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
68839993 CACATCAAAT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:68848722 original size:37 final size:37
Alignment explanation
Indices: 68848676--68848750 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
68848666 AAAAATCACT
* * *
68848676 TAACGAAACTTGTATATTTATCAACAAGCATTCATAA
1 TAACAAAACTTATATATCTATCAACAAGCATTCATAA
68848713 TAACAAAACTTATATATCTATCAACAAGCATTCATAA
1 TAACAAAACTTATATATCTATCAACAAGCATTCATAA
68848750 T
1 T
68848751 CTATCAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.32
Consensus pattern (37 bp):
TAACAAAACTTATATATCTATCAACAAGCATTCATAA
Found at i:68848752 original size:21 final size:21
Alignment explanation
Indices: 68848694--68848757 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
68848684 CTTGTATATT
68848694 TATCAACAAGCATTCATAA--
1 TATCAACAAGCATTCATAATC
*
68848713 TAACAA-AA-C-TT-ATATATC
1 TATCAACAAGCATTCATA-ATC
68848731 TATCAACAAGCATTCATAATC
1 TATCAACAAGCATTCATAATC
68848752 TATCAA
1 TATCAA
68848758 GAAACTTCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
15 3 0.08
16 3 0.08
17 1 0.03
18 7 0.19
19 7 0.19
20 1 0.03
21 11 0.31
22 3 0.08
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.30
Consensus pattern (21 bp):
TATCAACAAGCATTCATAATC
Found at i:68866491 original size:17 final size:19
Alignment explanation
Indices: 68866459--68866494 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
68866449 TATGGCAACG
68866459 AATGATATGAATGTATATA
1 AATGATATGAATGTATATA
68866478 AATGA-ATG-ATGTATATA
1 AATGATATGAATGTATATA
68866495 TATGCTCGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 3 0.18
19 5 0.29
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.36
Consensus pattern (19 bp):
AATGATATGAATGTATATA
Found at i:68868137 original size:27 final size:27
Alignment explanation
Indices: 68868107--68868158 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
68868097 ATCTCATAGG
68868107 GGCATAACAGTCATTTTAGCAACTAGA
1 GGCATAACAGTCATTTTAGCAACTAGA
* *
68868134 GGCATAATAGTCATTTTATCAACTA
1 GGCATAACAGTCATTTTAGCAACTA
68868159 AGGGGTCTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (27 bp):
GGCATAACAGTCATTTTAGCAACTAGA
Found at i:68876540 original size:25 final size:25
Alignment explanation
Indices: 68876501--68876572 Score: 108
Period size: 25 Copynumber: 2.9 Consensus size: 25
68876491 GGAGGAAGTG
*
68876501 CAAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAAGGGCTTTGCCCTAGTTTAC
* * *
68876526 CGAAAAGGGCCTTGCCCTAGTTTAT
1 CAAAAAGGGCTTTGCCCTAGTTTAC
68876551 CAAAAAGGGCTTTGCCCTAGTT
1 CAAAAAGGGCTTTGCCCTAGTT
68876573 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCTAGTTTAC
Found at i:68876585 original size:24 final size:25
Alignment explanation
Indices: 68876503--68876585 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
68876493 AGGAAGTGCA
* *
68876503 AAAAG-GGCTTTGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCTAGTTTATC
*
68876527 GAAAAG-GGCCTTGCCCTAGTTTATC
1 -AAAAGAGGCTTTGCCCTAGTTTATC
*
68876552 AAAA-AGGGCTTTGCCCTAG-TTATT
1 AAAAGA-GGCTTTGCCCTAGTTTATC
68876576 AAAAGAGGCT
1 AAAAGAGGCT
68876586 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
24 16 0.32
25 34 0.68
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCTAGTTTATC
Found at i:68880069 original size:38 final size:38
Alignment explanation
Indices: 68880018--68880095 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
68880008 CTAAGCTATG
*
68880018 TTAGCTTACTTTGTGTATGTGATTCTTTGTTTTATAGA
1 TTAGCTTACTTTGTGCATGTGATTCTTTGTTTTATAGA
68880056 TTAGCTTACTTTGTGCATGTGATTCTTTGTTTTATAGA
1 TTAGCTTACTTTGTGCATGTGATTCTTTGTTTTATAGA
68880094 TT
1 TT
68880096 TTGAATTCAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.18, C:0.09, G:0.18, T:0.55
Consensus pattern (38 bp):
TTAGCTTACTTTGTGCATGTGATTCTTTGTTTTATAGA
Found at i:68886587 original size:39 final size:40
Alignment explanation
Indices: 68886383--68886605 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
68886373 TTGAATGCTG
* * * * * *
68886383 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
68886423 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
68886463 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
68886503 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
68886543 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
68886582 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
68886606 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:68886625 original size:79 final size:80
Alignment explanation
Indices: 68886458--68886640 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
68886448 GTGCGAGATA
* * *
68886458 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
68886523 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
68886538 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
68886602 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
68886617 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
68886641 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:68894722 original size:54 final size:54
Alignment explanation
Indices: 68894592--68894744 Score: 175
Period size: 54 Copynumber: 2.8 Consensus size: 54
68894582 CCCCGCATTG
* * * * *
68894592 AAAAATTAACGAAATA-CCCTCGATTTTAAAAATTACCGAAATACCCCTAGTTTA
1 AAAAATTAACGAAATACCCCT-GGTTTCAAAAATTACTGAAATACCCCCAATTTA
* *
68894646 AAAAATTATCGAAATACCCCTGGTTTGAAAAATTACTGAAATACCCCCAATTTA
1 AAAAATTAACGAAATACCCCTGGTTTCAAAAATTACTGAAATACCCCCAATTTA
* * * *
68894700 GAAAATTACCAAAATACCCCTGG-TTCATAAAATTACTAAAATACC
1 AAAAATTAACGAAATACCCCTGGTTTCA-AAAATTACTGAAATACC
68894745 TTGGTAGTGT
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.03
54 79 0.92
55 4 0.05
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (54 bp):
AAAAATTAACGAAATACCCCTGGTTTCAAAAATTACTGAAATACCCCCAATTTA
Found at i:68894731 original size:27 final size:26
Alignment explanation
Indices: 68894592--68894744 Score: 144
Period size: 27 Copynumber: 5.7 Consensus size: 26
68894582 CCCCGCATTG
* * *
68894592 AAAAATTAACGAAATACCCTCGATTTT
1 AAAAATTACCGAAATACCC-CTAGTTT
68894619 AAAAATTACCGAAATACCCCTAGTTT
1 AAAAATTACCGAAATACCCCTAGTTT
* *
68894645 AAAAAATTATCGAAATACCCCTGGTTT
1 -AAAAATTACCGAAATACCCCTAGTTT
* * *
68894672 GAAAAATTACTGAAATACCCCCAATTT
1 -AAAAATTACCGAAATACCCCTAGTTT
* * *
68894699 AGAAAATTACCAAAATACCCCTGGTTC
1 A-AAAATTACCGAAATACCCCTAGTTT
**
68894726 ATAAAATTACTAAAATACC
1 A-AAAATTACCGAAATACC
68894745 TTGGTAGTGT
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 6 0.06
27 99 0.94
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (26 bp):
AAAAATTACCGAAATACCCCTAGTTT
Found at i:68894742 original size:81 final size:81
Alignment explanation
Indices: 68894589--68894744 Score: 201
Period size: 81 Copynumber: 1.9 Consensus size: 81
68894579 AAACCCCGCA
* * * *
68894589 TTGAAAAATTAACGAAATACCCTCGATTTTAAAAATTACCGAAATACCCCTAGTTTAAAAAATTA
1 TTGAAAAATTAACGAAATACCCTCCAATTTAAAAATTACCAAAATACCCCTAGTTCAAAAAATTA
*
68894654 TCGAAATACCCCTGGT
66 TCAAAATACCCCTGGT
* *
68894670 TTGAAAAATT-ACTGAAATACCC-CCAATTTAGAAAATTACCAAAATACCCCTGGTTCATAAAAT
1 TTGAAAAATTAAC-GAAATACCCTCCAATTTA-AAAATTACCAAAATACCCCTAGTTCAAAAAAT
68894733 TA-CTAAAATACC
64 TATC-AAAATACC
68894745 TTGGTAGTGT
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
80 9 0.14
81 56 0.86
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.28
Consensus pattern (81 bp):
TTGAAAAATTAACGAAATACCCTCCAATTTAAAAATTACCAAAATACCCCTAGTTCAAAAAATTA
TCAAAATACCCCTGGT
Found at i:68894783 original size:27 final size:27
Alignment explanation
Indices: 68894748--68894822 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
68894738 AAATACCTTG
* * * *
68894748 GTAGTGTAAAAAGATCGTAATACCCTT
1 GTAGGGTAAAATGACCGTAATACCCCT
* *
68894775 GTATGGTAAAATGACCATAATACCCCT
1 GTAGGGTAAAATGACCGTAATACCCCT
68894802 GTAGGGTAAAATGACCGTAAT
1 GTAGGGTAAAATGACCGTAAT
68894823 GCTCCTATAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (27 bp):
GTAGGGTAAAATGACCGTAATACCCCT
Found at i:68894836 original size:27 final size:27
Alignment explanation
Indices: 68894765--68894842 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
68894755 AAAAAGATCG
* *
68894765 TAATACCCTTGTATGGTAAAATGACCA
1 TAATACCCCTATATGGTAAAATGACCA
* * *
68894792 TAATACCCCTGTAGGGTAAAATGACCG
1 TAATACCCCTATATGGTAAAATGACCA
* * *
68894819 TAATGCTCCTATATGGTAGAATGA
1 TAATACCCCTATATGGTAAAATGA
68894843 AAATTATGCC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (27 bp):
TAATACCCCTATATGGTAAAATGACCA
Found at i:68903740 original size:27 final size:26
Alignment explanation
Indices: 68903688--68903894 Score: 116
Period size: 27 Copynumber: 7.7 Consensus size: 26
68903678 GGTCGTTAAG
* *
68903688 ACCCCAAATTGTAAAATTA-CTGAAAT
1 ACCCCAGATTGTAAAATTATC-AAAAT
* * *
68903714 ACCCCCGATTATTAAAATTGTCAAAAT
1 ACCCCAGATT-GTAAAATTATCAAAAT
*
68903741 ACTCCCAGATTGTAAAATTATTAAAAT
1 AC-CCCAGATTGTAAAATTATCAAAAT
* * * *
68903768 ACCCTCAGTTTGGAAAATTACCGAAAT
1 ACCC-CAGATTGTAAAATTATCAAAAT
*
68903795 ACCCC-GATT-TAGAAAGTTATCGAAAT
1 ACCCCAGATTGTA-AAA-TTATCAAAAT
* ** *
68903821 ACCCCCAGTTTAAAAAATTACCAAAAT
1 A-CCCCAGATTGTAAAATTATCAAAAT
* * * *
68903848 ACCCCTGGTTTGGAAAATTACCAAAAT
1 ACCCC-AGATTGTAAAATTATCAAAAT
*
68903875 ACCTCCA-ATTTGGAAAATTA
1 ACC-CCAGA-TTGTAAAATTA
68903895 CTGAAATACC
Statistics
Matches: 143, Mismatches: 26, Indels: 23
0.74 0.14 0.12
Matches are distributed among these distances:
24 1 0.01
25 6 0.04
26 25 0.17
27 94 0.66
28 16 0.11
29 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.28
Consensus pattern (26 bp):
ACCCCAGATTGTAAAATTATCAAAAT
Found at i:68903795 original size:54 final size:52
Alignment explanation
Indices: 68903737--68903904 Score: 160
Period size: 53 Copynumber: 3.1 Consensus size: 52
68903727 AAAATTGTCA
*
68903737 AAATACTCCCAGATTGTAAAATTATTAAAATACCCTCAGTTTGGAAAATTACCG
1 AAATAC-CCC-GATTGTAAAATTATCAAAATACCCTCAGTTTGGAAAATTACCG
* * ** *
68903791 AAATACCCCGATT-TAGAAAGTTATCGAAATACCCCCAGTTTAAAAAATTACCA
1 AAATACCCCGATTGTA-AAA-TTATCAAAATACCCTCAGTTTGGAAAATTACCG
* * * * *
68903844 AAATACCCCTGGTTTGGAAAATTACCAAAATA-CCTCCAATTTGGAAAATTACTG
1 AAATACCCC--GATTGTAAAATTATCAAAATACCCT-CAGTTTGGAAAATTACCG
68903898 AAATACC
1 AAATACC
68903905 TTGGTAGTGT
Statistics
Matches: 92, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
51 2 0.02
52 7 0.08
53 41 0.45
54 35 0.38
55 6 0.07
56 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.27
Consensus pattern (52 bp):
AAATACCCCGATTGTAAAATTATCAAAATACCCTCAGTTTGGAAAATTACCG
Found at i:68903818 original size:26 final size:27
Alignment explanation
Indices: 68903764--68903904 Score: 140
Period size: 27 Copynumber: 5.3 Consensus size: 27
68903754 AAAATTATTA
* *
68903764 AAATACCCTCAGTTTGGAAAATTACCG
1 AAATACCCCCAGTTTAGAAAATTACCG
* * *
68903791 AAATACCCCGA-TTTAGAAAGTTATCG
1 AAATACCCCCAGTTTAGAAAATTACCG
* *
68903817 AAATACCCCCAGTTTAAAAAATTACCA
1 AAATACCCCCAGTTTAGAAAATTACCG
** * *
68903844 AAATACCCCTGGTTTGGAAAATTACCA
1 AAATACCCCCAGTTTAGAAAATTACCG
* * * *
68903871 AAATACCTCCAATTTGGAAAATTACTG
1 AAATACCCCCAGTTTAGAAAATTACCG
68903898 AAATACC
1 AAATACC
68903905 TTGGTAGTGT
Statistics
Matches: 93, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
26 22 0.24
27 71 0.76
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (27 bp):
AAATACCCCCAGTTTAGAAAATTACCG
Found at i:68903830 original size:53 final size:54
Alignment explanation
Indices: 68903754--68903904 Score: 169
Period size: 54 Copynumber: 2.8 Consensus size: 54
68903744 CCCAGATTGT
** *
68903754 AAAATTATTAAAATACCCTCAGTTTGGAAAATTACCGAAATACCCC-GATTTAG
1 AAAATTACCAAAATACCCCCAGTTTGGAAAATTACCGAAATACCCCTGATTTAG
* * * ** * * *
68903807 AAAGTTATCGAAATACCCCCAGTTTAAAAAATTACCAAAATACCCCTGGTTTGG
1 AAAATTACCAAAATACCCCCAGTTTGGAAAATTACCGAAATACCCCTGATTTAG
* * *
68903861 AAAATTACCAAAATACCTCCAATTTGGAAAATTACTGAAATACC
1 AAAATTACCAAAATACCCCCAGTTTGGAAAATTACCGAAATACC
68903905 TTGGTAGTGT
Statistics
Matches: 79, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
53 39 0.49
54 40 0.51
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCCAGTTTGGAAAATTACCGAAATACCCCTGATTTAG
Found at i:68903895 original size:27 final size:27
Alignment explanation
Indices: 68903735--68903905 Score: 127
Period size: 27 Copynumber: 6.4 Consensus size: 27
68903725 TTAAAATTGT
* * *
68903735 CAAAATA-CTCCCAGATTGTAAAATTAT
1 CAAAATACCT-CCAGTTTGGAAAATTAC
*
68903762 TAAAATACC-CTCAGTTTGGAAAATTAC
1 CAAAATACCTC-CAGTTTGGAAAATTAC
* * * *
68903789 CGAAATACC-CC-GATTTAGAAAGTTAT
1 CAAAATACCTCCAG-TTTGGAAAATTAC
* * **
68903815 CGAAATACCCCCAGTTTAAAAAATTAC
1 CAAAATACCTCCAGTTTGGAAAATTAC
*
68903842 CAAAATACC-CCTGGTTTGGAAAATTAC
1 CAAAATACCTCC-AGTTTGGAAAATTAC
*
68903869 CAAAATACCTCCAATTTGGAAAATTAC
1 CAAAATACCTCCAGTTTGGAAAATTAC
**
68903896 TGAAATACCT
1 CAAAATACCT
68903906 TGGTAGTGTA
Statistics
Matches: 117, Mismatches: 20, Indels: 14
0.77 0.13 0.09
Matches are distributed among these distances:
25 1 0.01
26 23 0.20
27 89 0.76
28 4 0.03
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.27
Consensus pattern (27 bp):
CAAAATACCTCCAGTTTGGAAAATTAC
Found at i:68907650 original size:39 final size:38
Alignment explanation
Indices: 68907571--68907780 Score: 158
Period size: 39 Copynumber: 5.4 Consensus size: 38
68907561 ACCAATTACT
* * *
68907571 AGCACAAGCCTGCGGGAATTTAAACCCGG-TATAATACC
1 AGCACAAGCCTGCGGGACTTT-AGCCCGGATATAATTCC
* * *
68907609 AGCTCGAAGCCTGCGGGACTTTAGCCCGGACATATTTCC
1 AGCAC-AAGCCTGCGGGACTTTAGCCCGGATATAATTCC
* *
68907648 AGCACATAGCCTGC-GGACCTTAAGTCCGGATATAATTCC
1 AGCACA-AGCCTGCGGGA-CTTTAGCCCGGATATAATTCC
* * * * *
68907687 AGCACATAGCCTGC-AGACCGTAAGTCCGAATATAATTCC
1 AGCACA-AGCCTGCGGGA-CTTTAGCCCGGATATAATTCC
* * * *
68907726 AGCACATAGCCTG-TGGACCCTAAGTCCGGATATAATTCC
1 AGCACA-AGCCTGCGGGA-CTTTAGCCCGGATATAATTCC
68907765 AGCACATAGCCTGCGG
1 AGCACA-AGCCTGCGG
68907781 ACCCTAAGTC
Statistics
Matches: 148, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
38 14 0.09
39 133 0.90
40 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (38 bp):
AGCACAAGCCTGCGGGACTTTAGCCCGGATATAATTCC
Found at i:68907683 original size:78 final size:79
Alignment explanation
Indices: 68907616--68907788 Score: 235
Period size: 78 Copynumber: 2.2 Consensus size: 79
68907606 ACCAGCTCGA
* * * * *
68907616 AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATA
1 AGCCTGCGGGACCGTAAGCCCGAACATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
68907680 TAATTCCAGCACAT
66 TAATTCCAGCACAT
* * * *
68907694 AGCCTGC-AGACCGTAAGTCCGAATATAATTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATA
1 AGCCTGCGGGACCGTAAGCCCGAACATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
68907758 TAATTCCAGCACAT
66 TAATTCCAGCACAT
*
68907772 AGCCTGC-GGACCCTAAG
1 AGCCTGCGGGACCGTAAG
68907789 TCCGGATACA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
77 2 0.02
78 81 0.98
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (79 bp):
AGCCTGCGGGACCGTAAGCCCGAACATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
TAATTCCAGCACAT
Found at i:68907783 original size:39 final size:39
Alignment explanation
Indices: 68907634--68907796 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
68907624 GGACTTTAGC
* * *
68907634 CCGGACATATTTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
68907673 CCGGATATAATTCCAGCACATAGCCTGCAGACCGTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
68907712 CCGAATATAATTCCAGCACATAGCCTGTGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
68907751 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
68907790 CCGGATA
1 CCGGATA
68907797 CACATCAAAT
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:68914828 original size:39 final size:39
Alignment explanation
Indices: 68914796--68914908 Score: 163
Period size: 39 Copynumber: 2.9 Consensus size: 39
68914786 CGGACATATC
* *
68914796 TCCAGCACATAGCATGCGGACCTTAAGTCCGGATATAAT
1 TCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAAT
* * *
68914835 TCCTGCACATAGCCTACGGACCCTATGTCCGGATATAAT
1 TCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAAT
* *
68914874 TCCAGCACATAGCCTGTGGACCCTAAGTCTGGATA
1 TCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
68914909 CACATCAAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
TCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAAT
Found at i:68920428 original size:40 final size:40
Alignment explanation
Indices: 68920369--68920545 Score: 268
Period size: 40 Copynumber: 4.5 Consensus size: 40
68920359 TGGATGATAA
* *
68920369 CCGGGCTAAGACCCAAAGGCATTTGTACGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
68920409 CTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
68920449 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
68920489 CCGGGCTAGGACTCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
68920529 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
68920546 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 11 0.09
40 113 0.90
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:68920814 original size:22 final size:22
Alignment explanation
Indices: 68920772--68920815 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
68920762 AAAATGTGCA
* *
68920772 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
68920794 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
68920816 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:68927682 original size:35 final size:35
Alignment explanation
Indices: 68927643--68927714 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
68927633 TTAAGTTGAT
68927643 AGTGTGACTGGATCTCCGAAAATCTTCGATCCCCG
1 AGTGTGACTGGATCTCCGAAAATCTTCGATCCCCG
68927678 AGTGTGACTGGATCTCCGAAAATCTTCGATCCCCG
1 AGTGTGACTGGATCTCCGAAAATCTTCGATCCCCG
68927713 AG
1 AG
68927715 CTAGCTTGGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (35 bp):
AGTGTGACTGGATCTCCGAAAATCTTCGATCCCCG
Found at i:68936646 original size:19 final size:22
Alignment explanation
Indices: 68936613--68936652 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
68936603 AGTTTATTTA
68936613 TGTTATAATTGTTGC-AAAATG
1 TGTTATAATTGTTGCTAAAATG
68936634 TGTT-TAATT-TTGCTAAAAT
1 TGTTATAATTGTTGCTAAAAT
68936653 CTATTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.47
Consensus pattern (22 bp):
TGTTATAATTGTTGCTAAAATG
Found at i:68938076 original size:24 final size:25
Alignment explanation
Indices: 68938043--68938091 Score: 91
Period size: 24 Copynumber: 2.0 Consensus size: 25
68938033 CACAATAAAA
68938043 ACATACATTTTCAACAAATTTCATG
1 ACATACATTTTCAACAAATTTCATG
68938068 ACAT-CATTTTCAACAAATTTCATG
1 ACATACATTTTCAACAAATTTCATG
68938092 CTTGTAATCC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (25 bp):
ACATACATTTTCAACAAATTTCATG
Done.