Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 210 of 352
Found at i:69198106 original size:58 final size:58
Alignment explanation
Indices: 69197977--69198130 Score: 182
Period size: 58 Copynumber: 2.7 Consensus size: 58
69197967 TGTACTAACG
* * *
69197977 ATGGTCGAAACCATCCCTTTTCATATTTGATGGTCATCACTATCCCTTTTCGTATTCG
1 ATGGTCGAAACCATCCCTTTTCATATTCGATGGTCATCACTATCCCTTTTCATATTCA
* * * ** * * * * *
69198035 ACGATTGTCACCATTCCTTTTCATATTCAATGGTCGTCACTGTCCCTTTTTATATTCA
1 ATGGTCGAAACCATCCCTTTTCATATTCGATGGTCATCACTATCCCTTTTCATATTCA
*
69198093 ATGGTCGAAACCATCCCTTTTCATATTCGATGGGCATC
1 ATGGTCGAAACCATCCCTTTTCATATTCGATGGTCATC
69198131 GATATGTTGT
Statistics
Matches: 74, Mismatches: 22, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
58 74 1.00
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (58 bp):
ATGGTCGAAACCATCCCTTTTCATATTCGATGGTCATCACTATCCCTTTTCATATTCA
Found at i:69216709 original size:30 final size:28
Alignment explanation
Indices: 69216673--69216747 Score: 71
Period size: 30 Copynumber: 2.5 Consensus size: 28
69216663 GTCGACGGGG
*
69216673 GGGGAGGGGGTGGGAAGGGGGAGGGGCGAT
1 GGGGAGGGGGTGGGAAGGGAGA-GGG-GAT
*
69216703 GGGGAGGTGGGCAGTGG-AGGGAGAGGGGAT
1 GGGGAGG-GGG-TG-GGAAGGGAGAGGGGAT
*
69216733 GGGGGGGGGGTGGGA
1 GGGGAGGGGGTGGGA
69216748 GCTGGGGAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
27 2 0.05
28 1 0.03
29 3 0.08
30 16 0.43
31 6 0.16
32 7 0.19
33 2 0.05
ACGTcount: A:0.16, C:0.03, G:0.73, T:0.08
Consensus pattern (28 bp):
GGGGAGGGGGTGGGAAGGGAGAGGGGAT
Found at i:69216972 original size:28 final size:28
Alignment explanation
Indices: 69216941--69216998 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
69216931 GACAGCGGGG
* *
69216941 GGGGGAGGGGGGGTGGAGGG-GGGAGGAA
1 GGGGGAGAGAGGGT-GAGGGAGGGAGGAA
*
69216969 GGGGGAGAGAGGGTGAGGGAGGGGGGAA
1 GGGGGAGAGAGGGTGAGGGAGGGAGGAA
69216997 GG
1 GG
69216999 AGGGGTCCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.21, C:0.00, G:0.76, T:0.03
Consensus pattern (28 bp):
GGGGGAGAGAGGGTGAGGGAGGGAGGAA
Found at i:69216980 original size:21 final size:18
Alignment explanation
Indices: 69216940--69217003 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 18
69216930 CGACAGCGGG
*
69216940 GGGGGGAGGGGGGGTGGA
1 GGGGGGAGGGGGGGAGGA
69216958 GGGGGGAGGAAGGGGGAGAGA
1 GGGGGGAGG--GGGGGAG-GA
*
69216979 GGGTGAGGGAGGGGGGAAGGA
1 -GG-G-GGGAGGGGGGGAGGA
69217000 GGGG
1 GGGG
69217004 TCCAGGGGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
18 10 0.26
19 1 0.03
20 8 0.21
21 4 0.11
22 8 0.21
23 1 0.03
24 6 0.16
ACGTcount: A:0.20, C:0.00, G:0.77, T:0.03
Consensus pattern (18 bp):
GGGGGGAGGGGGGGAGGA
Found at i:69217002 original size:11 final size:10
Alignment explanation
Indices: 69216937--69217003 Score: 55
Period size: 10 Copynumber: 6.4 Consensus size: 10
69216927 GCACGACAGC
*
69216937 GGGGGGGGGA
1 GGGGGGAGGA
*
69216947 GGGGGGGTGGA
1 -GGGGGGAGGA
69216958 GGGGGGAGGA
1 GGGGGGAGGA
*
69216968 AGGGGGA-GA
1 GGGGGGAGGA
*
69216977 GAGGGTGAGGGA
1 G-GGGGGA-GGA
69216989 GGGGGGAAGGA
1 GGGGGG-AGGA
69217000 GGGG
1 GGGG
69217004 TCCAGGGGGA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
9 2 0.04
10 20 0.43
11 20 0.43
12 4 0.09
ACGTcount: A:0.19, C:0.00, G:0.78, T:0.03
Consensus pattern (10 bp):
GGGGGGAGGA
Found at i:69217118 original size:8 final size:8
Alignment explanation
Indices: 69217101--69217144 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
69217091 GAAAAGGGCA
69217101 GGGGAGGGG
1 GGGGA-GGG
69217110 GGGGAGGG
1 GGGGAGGG
69217118 GGGGA-GG
1 GGGGAGGG
*
69217125 GGGAAGGG
1 GGGGAGGG
*
69217133 GGAGAGGG
1 GGGGAGGG
69217141 GGGG
1 GGGG
69217145 GAAGTGGGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
7 6 0.20
8 19 0.63
9 5 0.17
ACGTcount: A:0.16, C:0.00, G:0.84, T:0.00
Consensus pattern (8 bp):
GGGGAGGG
Found at i:69217126 original size:15 final size:15
Alignment explanation
Indices: 69217101--69217143 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
69217091 GAAAAGGGCA
*
69217101 GGGGAGGGGGGGGAG
1 GGGGAGAGGGGGGAG
* *
69217116 GGGGGGAGGGGGAAG
1 GGGGAGAGGGGGGAG
69217131 GGGGAGAGGGGGG
1 GGGGAGAGGGGGG
69217144 GGAAGTGGGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.84, T:0.00
Consensus pattern (15 bp):
GGGGAGAGGGGGGAG
Found at i:69217133 original size:23 final size:23
Alignment explanation
Indices: 69217101--69217144 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
69217091 GAAAAGGGCA
* *
69217101 GGGGAGGGGGGGGAGGGGGGGAG
1 GGGGAAGGGGGAGAGGGGGGGAG
69217124 GGGGAAGGGGGAGAGGGGGGG
1 GGGGAAGGGGGAGAGGGGGGG
69217145 GAAGTGGGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.84, T:0.00
Consensus pattern (23 bp):
GGGGAAGGGGGAGAGGGGGGGAG
Found at i:69217450 original size:17 final size:16
Alignment explanation
Indices: 69217426--69217474 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 16
69217416 AAGGGGGGAA
69217426 GTGGGGGGGGGGGTCG-
1 GTGGGGGGGGGGGT-GT
*
69217442 GTGGAGGGGGAGGGTGT
1 GTGG-GGGGGGGGGTGT
69217459 GTGGGGGAGGGGGGTG
1 GTGGGGG-GGGGGGTG
69217475 GGGGGGCGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
16 8 0.29
17 20 0.71
ACGTcount: A:0.06, C:0.02, G:0.78, T:0.14
Consensus pattern (16 bp):
GTGGGGGGGGGGGTGT
Found at i:69228800 original size:39 final size:40
Alignment explanation
Indices: 69228723--69228869 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
69228713 TAGCTCCTCG
* * *
69228723 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
69228763 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
69228802 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
69228842 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
69228870 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:69228880 original size:80 final size:80
Alignment explanation
Indices: 69228769--69228949 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
69228759 CTCATTCAAT
* * *
69228769 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
69228832 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
69228848 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
69228912 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
69228929 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
69228950 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:69228909 original size:40 final size:40
Alignment explanation
Indices: 69228766--69228949 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
69228756 TAACTCATTC
* *
69228766 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
69228806 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
69228846 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
69228886 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
69228927 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
69228950 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:69232144 original size:40 final size:40
Alignment explanation
Indices: 69232086--69232204 Score: 159
Period size: 40 Copynumber: 3.0 Consensus size: 40
69232076 AATCAACTAA
* *
69232086 TCACTAGCATAAATGCCTTCGGGGCTTAGCCCGGATATAG
1 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* * *
69232126 TCGCTAGCACAAATGCCTTC-GGATCTTAGTCCGGATGTAG
1 TCACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAG
*
69232166 TCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 TCAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
69232205 CATTCGAGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
39 2 0.03
40 35 0.52
41 27 0.40
42 3 0.04
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
Found at i:69241764 original size:46 final size:46
Alignment explanation
Indices: 69241697--69241872 Score: 217
Period size: 46 Copynumber: 3.8 Consensus size: 46
69241687 TGTAACCCGC
* * *
69241697 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTTGCAT
* * ** * *
69241743 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTACTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTTGCAT
* *** *
69241789 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACGTTTGCAT
69241836 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69241873 TGCTCAACAA
Statistics
Matches: 106, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
46 70 0.66
47 36 0.34
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTTGCAT
Found at i:69241863 original size:93 final size:93
Alignment explanation
Indices: 69241704--69241875 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
69241694 CGCCCATAAG
* * *
69241704 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
69241769 ACGAGTTCGGATGCCTACTTACATCTCT
66 ACGAGTTCGGATGCCTACTTACATCTCT
*
69241797 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
69241862 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69241876 TCAACAATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTACTTACATCTCT
Found at i:69243829 original size:15 final size:15
Alignment explanation
Indices: 69243755--69243834 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
69243745 CAAAGATAAC
*
69243755 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
69243769 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* * *
69243784 GAGAAACCCGGAATA
1 AAGAAATCCAGAATA
69243799 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
69243814 AAGAGATCTAGGATA
1 AAGAAATCCAGAATA
69243829 AAGAAA
1 AAGAAA
69243835 CCCAAGATAC
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
14 9 0.17
15 42 0.81
16 1 0.02
ACGTcount: A:0.57, C:0.12, G:0.19, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:69243843 original size:15 final size:15
Alignment explanation
Indices: 69243766--69243843 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
69243756 AGAAAACCGA
69243766 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
69243781 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
69243795 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* * *
69243810 AATAAAGAGATCTAGG
1 -ATAAAGAAATCCAAG
*
69243826 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
69243841 ATA
1 ATA
69243844 CGATACTATG
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
14 3 0.06
15 42 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.14, G:0.18, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:69246950 original size:93 final size:93
Alignment explanation
Indices: 69246791--69246962 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
69246781 CGCCCATAAG
* * * *
69246791 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTTCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
69246856 ACGAGTTCGGATGCCTAGTTACATCTCT
66 ACGAGTTCGGATGCCTAGTTACATCTCT
*
69246884 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
69246949 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69246963 TCAACAATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCT
Found at i:69246959 original size:46 final size:46
Alignment explanation
Indices: 69246784--69246959 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
69246774 TGTAACCCGC
* * * *
69246784 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTTCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
* * *
69246830 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACAT
*
69246880 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
*
69246923 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
69246960 TGCTCAACAA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 62 0.56
47 29 0.26
49 1 0.01
50 7 0.06
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
Found at i:69246978 original size:46 final size:46
Alignment explanation
Indices: 69246792--69246978 Score: 147
Period size: 46 Copynumber: 4.0 Consensus size: 46
69246782 GCCCATAAGC
* * ***
69246792 GAACTCGGACTCAACTCAACGAGCTCGG-GCGTTTTCATCCATAGGT
1 GAACTCGGACTCAACTCAACGAGTTCGGAGCATCAACATCCATA-GT
* *
69246838 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-TACATCTC-T--C
1 GAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TCAACATC-CATAGT
***
69246885 GAACTCGGACTCAACTCAACGAGTTCGGA-CATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGAGCATCAACATCCAT-AGT
69246931 GAACTCGGACTCAACTCAACGAGTTCGGATGC-TCAACAATCC-TAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-GCATCAAC-ATCCATAGT
69246977 GA
1 GA
69246979 CATGTCACTT
Statistics
Matches: 118, Mismatches: 9, Indels: 28
0.76 0.06 0.18
Matches are distributed among these distances:
42 2 0.02
43 7 0.06
44 1 0.01
46 61 0.52
47 32 0.27
48 6 0.05
49 1 0.01
50 6 0.05
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAGCATCAACATCCATAGT
Found at i:69252441 original size:27 final size:26
Alignment explanation
Indices: 69252380--69252466 Score: 77
Period size: 27 Copynumber: 3.3 Consensus size: 26
69252370 TGGAGGAAGC
* * *
69252380 GTTCTGGCGGCTCTGCCACAAATATCT
1 GTTCTGGTGACTCTACCAC-AATATCT
* * *
69252407 AATT-TGGTGGCTCTACCACAATATTT
1 -GTTCTGGTGACTCTACCACAATATCT
*
69252433 GTATCTGGTGACTCTATCACAATATCT
1 GT-TCTGGTGACTCTACCACAATATCT
69252460 GTTCTGG
1 GTTCTGG
69252467 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
25 1 0.02
26 12 0.24
27 34 0.69
28 2 0.04
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGACTCTACCACAATATCT
Found at i:69272510 original size:27 final size:26
Alignment explanation
Indices: 69272470--69272584 Score: 151
Period size: 27 Copynumber: 4.3 Consensus size: 26
69272460 ATGGAGGAAG
69272470 TGTTCTGGCT-GCTCTGCCACAAATATC
1 TGTTCTGG-TGGCTCTGCCAC-AATATC
69272497 TGTTCTGGTGGCTCTGCCACAAATATC
1 TGTTCTGGTGGCTCTGCCAC-AATATC
*
69272524 TGTTTTTGGTGGCTCTGCCACAATATC
1 TG-TTCTGGTGGCTCTGCCACAATATC
* *
69272551 TGTATCTGGTGACTCTGTCACAATATC
1 TGT-TCTGGTGGCTCTGCCACAATATC
69272578 TGTTCTG
1 TGTTCTG
69272585 TCAGCCATGC
Statistics
Matches: 81, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
26 6 0.07
27 58 0.72
28 17 0.21
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
TGTTCTGGTGGCTCTGCCACAATATC
Found at i:69280556 original size:47 final size:47
Alignment explanation
Indices: 69280505--69280917 Score: 711
Period size: 47 Copynumber: 8.7 Consensus size: 47
69280495 TTAGGATTCT
* * *
69280505 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
69280552 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
69280599 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
69280646 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
69280693 ATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
69280740 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
69280789 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
69280836 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
69280883 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
69280918 TCCCGAAGGG
Statistics
Matches: 353, Mismatches: 10, Indels: 6
0.96 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 305 0.86
49 47 0.13
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:69280808 original size:190 final size:188
Alignment explanation
Indices: 69280526--69280917 Score: 703
Period size: 190 Copynumber: 2.1 Consensus size: 188
69280516 GTGAACATGC
*
69280526 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
69280591 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
69280656 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGT
131 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAACGTGATGAATATGAAAGTGT
69280714 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
69280779 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69280844 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAACGTGATGGATGTGAAAGTGT
129 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAACGTGATGAATATGAAAGTGT
*
69280904 ATAAATGTGATAAG
1 ATATATGTGATAAG
69280918 TCCCGAAGGG
Statistics
Matches: 195, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
188 45 0.23
190 150 0.77
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (188 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAACGTGATGAATATGAAAGTGT
Found at i:69282613 original size:40 final size:40
Alignment explanation
Indices: 69282330--69282601 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
69282320 GAGAATTGAG
69282330 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
69282370 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
69282410 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
69282450 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
69282490 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** **
69282530 AGTGATATATCTGTTCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
69282570 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
69282602 ATCATGCTGG
Statistics
Matches: 214, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:69286415 original size:20 final size:22
Alignment explanation
Indices: 69286392--69286436 Score: 60
Period size: 19 Copynumber: 2.2 Consensus size: 22
69286382 GTGTGTATAC
69286392 GTGAAAGTATATGTGG-TAA-T
1 GTGAAAGTATATGTGGATAATT
*
69286412 GTG-AAGTATATTTGGATAATT
1 GTGAAAGTATATGTGGATAATT
69286433 GTGA
1 GTGA
69286437 TGTGAATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 11 0.52
20 6 0.29
21 4 0.19
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.38
Consensus pattern (22 bp):
GTGAAAGTATATGTGGATAATT
Found at i:69286550 original size:25 final size:25
Alignment explanation
Indices: 69286522--69286600 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
69286512 CTAATGGCCG
69286522 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
69286547 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
69286569 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
69286594 ATGTGAT
1 ATGTGAT
69286601 AAGGCTAAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:69286556 original size:46 final size:47
Alignment explanation
Indices: 69286475--69286881 Score: 625
Period size: 47 Copynumber: 8.7 Consensus size: 47
69286465 TAGGATTCCT
* * *
69286475 ATGTGATGGATGTGAAACATGTATATATGAGATAAGG-CTAATGGCCG
1 ATGTGATGAATGTGAAA-GTGTATATATGTGATAAGGCCTAATGGCCG
69286522 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
69286569 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTAAATGG-CG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCG
69286615 ATGTGATGAATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
69286660 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
69286709 ATGTGATGAATGTGAAAGTGTATATATGTGATACAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATA-AGGCCTAATGGCCG
*
69286757 ATGTGATGAATGTGAAAGTGTATATCTGTGATAAGGCCT-ATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
69286803 ATGTGATGAATGTGAAAGTGTATATATGTG--AAGGCCT-ATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
69286847 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
69286882 TCCCGAAGGG
Statistics
Matches: 339, Mismatches: 10, Indels: 23
0.91 0.03 0.06
Matches are distributed among these distances:
44 58 0.17
45 24 0.07
46 80 0.24
47 86 0.25
48 46 0.14
49 45 0.13
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:69291034 original size:37 final size:38
Alignment explanation
Indices: 69290926--69291040 Score: 155
Period size: 37 Copynumber: 3.1 Consensus size: 38
69290916 TGTGAATATA
* *
69290926 TATACGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATAAGCGAGAATTATATCCGGACTTTAGGT-CGCAGGC
*
69290965 TATAAGCGAGAATTATATTCGGA-TTTCA-GTCGCAGGC
1 TATAAGCGAGAATTATATCCGGACTTT-AGGTCGCAGGC
*
69291002 TATATGC-AGAATTATATCCGGACTTTAGGTCGCAGGC
1 TATAAGCGAGAATTATATCCGGACTTTAGGTCGCAGGC
69291039 TA
1 TA
69291041 CGTGCTGGAC
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
36 15 0.22
37 27 0.40
38 4 0.06
39 22 0.32
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (38 bp):
TATAAGCGAGAATTATATCCGGACTTTAGGTCGCAGGC
Found at i:69295586 original size:40 final size:39
Alignment explanation
Indices: 69295549--69295732 Score: 212
Period size: 40 Copynumber: 4.7 Consensus size: 39
69295539 GCTACTCGTT
* *
69295549 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
69295589 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
* *
69295629 CCAATGCCTTCGGG-CTTAGCCCGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * * * *
69295667 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCT
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
69295708 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69295733 CATCATTCGA
Statistics
Matches: 124, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
37 2 0.02
38 23 0.19
39 19 0.15
40 69 0.56
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:69295716 original size:78 final size:80
Alignment explanation
Indices: 69295548--69295730 Score: 212
Period size: 78 Copynumber: 2.3 Consensus size: 80
69295538 AGCTACTCGT
* **
69295548 TCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 TCAAA-GCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
69295613 GATTTAGTAACTCGCA
65 GATATAGTAACTAGCA
* * **
69295629 CCAATGCCTTCGGG-CTTAGCCCGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 TCAAAGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
69295691 GATATGGTCACTTAGC-
65 GATATAGTAAC-TAGCA
69295707 TCAAAGCCTTCGGGACTTAGCCCG
1 TCAAAGCCTTCGGGACTTAGCCCG
69295731 GACATCATTC
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
77 3 0.03
78 50 0.58
79 21 0.24
80 9 0.10
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
TCAAAGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCA
Found at i:69302137 original size:46 final size:46
Alignment explanation
Indices: 69302066--69302193 Score: 220
Period size: 46 Copynumber: 2.8 Consensus size: 46
69302056 AACTAGGCAT
*
69302066 CCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
69302112 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
69302158 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69302194 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:69303948 original size:27 final size:27
Alignment explanation
Indices: 69303886--69303985 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 27
69303876 CCTTAATTGA
* * * * *
69303886 TAAAATGAATGTTTTTCCTTTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGG
69303913 TAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATATGG
** * *
69303940 TAAAATGACTGA-AATGCCCCTACATGG
1 TAAAATGACT-ATTTTGCCCTTATATGG
* *
69303967 TAAATTGACTGTTTTGCCC
1 TAAAATGACTATTTTGCCC
69303986 CTATGTGATA
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATATGG
Found at i:69303986 original size:27 final size:27
Alignment explanation
Indices: 69303910--69303988 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
69303900 TTCCTTTATG
* * *
69303910 TGGTAAAATGACTATTTTGCCCTTATA
1 TGGTAAAATGACTGTTTTGCCCCTACA
***
69303937 TGGTAAAATGACTGAAATGCCCCTACA
1 TGGTAAAATGACTGTTTTGCCCCTACA
*
69303964 TGGTAAATTGACTGTTTTGCCCCTA
1 TGGTAAAATGACTGTTTTGCCCCTA
69303989 TGTGATATAT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (27 bp):
TGGTAAAATGACTGTTTTGCCCCTACA
Found at i:69307599 original size:34 final size:34
Alignment explanation
Indices: 69307552--69307646 Score: 109
Period size: 34 Copynumber: 2.8 Consensus size: 34
69307542 GTAACAGTTA
* * * * *
69307552 GGGCCTTAACCCATTTCAATAATAGTAGTAGTCT
1 GGGCCTGAGCCCATTACAATAACAGTAGTAATCT
* *
69307586 GGGCCTGAGCCCATTACAGTAACAGTAGTAATTT
1 GGGCCTGAGCCCATTACAATAACAGTAGTAATCT
* *
69307620 GGGCTTGAGCCCATTACAGTAACAGTA
1 GGGCCTGAGCCCATTACAATAACAGTA
69307647 TGCAAACAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 53 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (34 bp):
GGGCCTGAGCCCATTACAATAACAGTAGTAATCT
Found at i:69311298 original size:27 final size:27
Alignment explanation
Indices: 69311259--69311443 Score: 219
Period size: 27 Copynumber: 6.9 Consensus size: 27
69311249 CAATTTGATG
* * *
69311259 AAATGACTATTTTGCCCTTATATGGTG
1 AAATGACTGTTTTGCCCTTATGTGGTA
*
69311286 AAATGACTGTTTTGCCCCTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
69311313 AAATGATTGTTTTGCCCCTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
69311340 AAATGACTGTTTTGCCCTAATTTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
69311367 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
*** * **
69311394 AAATGACTGAAATGCCTTTACATGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
69311421 AATTCACTGTTTTGCCC-TATGTG
1 AAATGACTGTTTTGCCCTTATGTG
69311444 AGGTATTTAT
Statistics
Matches: 133, Mismatches: 25, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
26 4 0.03
27 129 0.97
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATGTGGTA
Found at i:69313821 original size:40 final size:40
Alignment explanation
Indices: 69313626--69313814 Score: 272
Period size: 40 Copynumber: 4.7 Consensus size: 40
69313616 ATGATAACCA
* *
69313626 GGCTAAGTCCTGAAGGCATTTGTGCGAGCTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
69313666 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
69313706 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
69313746 GGCTAAGTCCCGAAGGCATTGGTGCGAATTACTATAAT-CG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
* * * *
69313786 GGCTATGCCCCGAAGGCATTCGAGCGAGT
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT
69313815 AGCTATATCC
Statistics
Matches: 136, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 133 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:69317739 original size:16 final size:17
Alignment explanation
Indices: 69317718--69317749 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
69317708 TCCGTCTGAA
69317718 ATACATGA-AAATGATG
1 ATACATGACAAATGATG
69317734 ATACATGACAAATGAT
1 ATACATGACAAATGAT
69317750 TTATGAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.50, C:0.09, G:0.16, T:0.25
Consensus pattern (17 bp):
ATACATGACAAATGATG
Found at i:69324697 original size:22 final size:22
Alignment explanation
Indices: 69324665--69324747 Score: 96
Period size: 22 Copynumber: 3.7 Consensus size: 22
69324655 TTTGAGCTGA
*
69324665 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTAATGAGC
**
69324687 TGGGCAGTAAGCTCTAATGAGC
1 TGAACAGTAAGCTCTAATGAGC
69324709 TGAACAGTAAGCTC-ACATGAGC
1 TGAACAGTAAGCTCTA-ATGAGC
*
69324731 TAAGAACAATAAGCTCT
1 T--GAACAGTAAGCTCT
69324748 TACGAGCTAG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
21 1 0.02
22 38 0.75
24 12 0.24
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (22 bp):
TGAACAGTAAGCTCTAATGAGC
Found at i:69331488 original size:43 final size:43
Alignment explanation
Indices: 69331346--69331509 Score: 162
Period size: 42 Copynumber: 3.9 Consensus size: 43
69331336 TATAAGCTCG
* *
69331346 TACAATGCCATAT-T-CCAGATATGGTCTTACA--TAGTATCACA
1 TACAATGCCA-ATGTCCCAGACATGGTCTTACACGTAATATCA-A
* * * *
69331387 TATCAAT-CCATTGTCCCAAATAGGGTCTTACACG-AA-ATCAA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAA
* *
69331428 TAACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
1 T-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAA
*
69331472 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAAT
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
69331510 CACATCTTGA
Statistics
Matches: 102, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
40 1 0.01
41 11 0.11
42 47 0.46
43 38 0.37
44 5 0.05
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAA
Found at i:69335464 original size:56 final size:56
Alignment explanation
Indices: 69335397--69335504 Score: 164
Period size: 56 Copynumber: 1.9 Consensus size: 56
69335387 TTCTACTTCG
* *
69335397 AATTTGTGGTCTTAAAACCACTA-TTCTGACTAGACCCTAATTCGAGATGTTATTCA
1 AATTTGTGGTCTCAAAACCACTATTTC-AACTAGACCCTAATTCGAGATGTTATTCA
* *
69335453 AATTTGTGGTCTCAAAACCACTGTTTCAACTAGACCCTAATTCGGGATGTTA
1 AATTTGTGGTCTCAAAACCACTATTTCAACTAGACCCTAATTCGAGATGTTA
69335505 CACCTAGGAC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
56 44 0.94
57 3 0.06
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (56 bp):
AATTTGTGGTCTCAAAACCACTATTTCAACTAGACCCTAATTCGAGATGTTATTCA
Found at i:69340677 original size:48 final size:48
Alignment explanation
Indices: 69340603--69340832 Score: 158
Period size: 50 Copynumber: 4.7 Consensus size: 48
69340593 GGGTAAGGTA
* *
69340603 CCGATGCCATG-TCCTGGACATAGTCTTACACTGGCTCACACATCAAAG
1 CCGATGCCATGTTCC-AGACATGGTCTTACACTGGCTCACACATCAAAG
* * * ** * * *
69340651 TCTATGCCATGTTCCAGACATGGTCTTACACTGACTGTCGTATATCGAGG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTGGC--TCACACATCAAAG
* * ***
69340701 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGTG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACA-C-ATCAAAG
* * * * * * *
69340751 CCGATGCCATG-TCTTAGACATGGTCTTACAGTAGCTCTCATATCTCGAGG
1 CCGATGCCATGTTC-CAGACATGGTCTTACACTGGCTCACACA--TCAAAG
* *
69340801 CCAATGCCATGTCCCAGACATGGTCTTACACT
1 CCGATGCCATGTTCCAGACATGGTCTTACACT
69340833 AGCACTCATA
Statistics
Matches: 143, Mismatches: 30, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
48 30 0.21
49 4 0.03
50 108 0.76
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACACATCAAAG
Found at i:69340810 original size:100 final size:99
Alignment explanation
Indices: 69340606--69340896 Score: 320
Period size: 100 Copynumber: 2.9 Consensus size: 99
69340596 TAAGGTACCG
** * * ** * * *
69340606 ATGCCATGTCCTGGACATAGTCTTACACTGGCTCACA-C-ATCAAAGTCTATGCCATGT-TCCAG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATC-GGGCCGATGCCATGTCT-TAG
* * * *
69340668 ACATGGTCTTACACT-GACTGTCGTATATCGAGGCCG
64 ACATGGTCTTACACTAG-CTCTCATATCTCGAGGCCA
69340704 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGTGCCGATGCCATGTCTTAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGG-GCCGATGCCATGTCTTAGA
*
69340769 CATGGTCTTACAGTAGCTCTCATATCTCGAGGCCA
65 CATGGTCTTACACTAGCTCTCATATCTCGAGGCCA
* * * * * *
69340804 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATATCTCGAGGCCGATGCCATGTCCTATA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCG-GGCCGATGCCATGTCTTAGA
*
69340869 CATGGTATTACACTAGCTCTCATATCTC
65 CATGGTCTTACACTAGCTCTCATATCTC
69340897 CCTAGCATCA
Statistics
Matches: 165, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
98 33 0.20
99 1 0.01
100 128 0.78
101 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (99 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGGCCGATGCCATGTCTTAGAC
ATGGTCTTACACTAGCTCTCATATCTCGAGGCCA
Found at i:69340894 original size:50 final size:50
Alignment explanation
Indices: 69340654--69340896 Score: 319
Period size: 50 Copynumber: 4.9 Consensus size: 50
69340644 ATCAAAGTCT
* * * *
69340654 ATGCCATGTTCCAGACATGGTCTTACACT-GACTGTCGTATATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATCTCGAGGCCG
* * *
69340704 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCG-GTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG-GCCG
** * *
69340754 ATGCCATGTCTTAGACATGGTCTTACAGTAGCTCTCATATCTCGAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCG
*
69340804 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATATCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCG
* * *
69340854 ATGCCATGTCCTATACATGGTATTACACTAGCTCTCATATCTC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
69340897 CCTAGCATCA
Statistics
Matches: 170, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
49 1 0.01
50 167 0.98
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCG
Found at i:69351180 original size:20 final size:20
Alignment explanation
Indices: 69351137--69351180 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
69351127 CCGGTTAGGG
* **
69351137 ACACGGGCGTGTCCCAGGCC
1 ACACGGGCATGTCCCAGGAA
*
69351157 ACACGGGCATGTCCTAGGAA
1 ACACGGGCATGTCCCAGGAA
69351177 ACAC
1 ACAC
69351181 AGGCGTGTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.34, G:0.30, T:0.11
Consensus pattern (20 bp):
ACACGGGCATGTCCCAGGAA
Found at i:69355998 original size:42 final size:42
Alignment explanation
Indices: 69355939--69356090 Score: 182
Period size: 42 Copynumber: 3.6 Consensus size: 42
69355929 ATTAAGATTA
*
69355939 CGTGTAAGACCACATCTGGGATATGGCATCGATATGAGACTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTT
*
69355981 CGTGTAAGACCATATCTGGGATATGACATCGATATGAGACTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTT
* * **
69356023 TGTGTAAGACCATAGCTGGGCCAT-TGGCATCGATACAAGA-TT
1 CGTGTAAGACCATATCTGGG--ATATGGCATCGATATGAGACTT
* **
69356065 ACATGTATTACCATATCTGGGATATG
1 -CGTGTAAGACCATATCTGGGATATG
69356091 CCATTGGTAC
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
41 2 0.02
42 62 0.66
43 28 0.30
44 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTT
Found at i:69359251 original size:46 final size:46
Alignment explanation
Indices: 69359154--69359272 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 46
69359144 CATGTGAGCC
69359154 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGACT
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CACATTATGAGAGACT
* *
69359201 -GTGTAAGACATGTCTGGGACATGCATC-G-GCATTGA-GACGAGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCACATT-ATGA-GAG-ACT
*
69359246 AGTGTAAGGCATGTCTGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
69359273 TGGCCTCAGG
Statistics
Matches: 65, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
43 6 0.09
44 4 0.06
45 3 0.05
46 52 0.80
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCACATTATGAGAGACT
Found at i:69364994 original size:19 final size:17
Alignment explanation
Indices: 69364955--69365049 Score: 67
Period size: 18 Copynumber: 5.7 Consensus size: 17
69364945 TCTCGATCTC
**
69364955 TTTTTCTTTTTCCTTCTT
1 TTTTTCTTTTTCAAT-TT
69364973 TTTTTCTTTTTCAA---
1 TTTTTCTTTTTCAATTT
69364987 --TTTCTTTTTCAATTT
1 TTTTTCTTTTTCAATTT
* **
69365002 TCTCTTCTTGATCAA-TT
1 T-TTTTCTTTTTCAATTT
69365019 TTTTTCTTTTTCAATTT
1 TTTTTCTTTTTCAATTT
69365036 CATTTTTCTTTTTC
1 --TTTTTCTTTTTC
69365050 TCACTTTGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
12 12 0.20
16 10 0.17
17 5 0.08
18 21 0.35
19 12 0.20
ACGTcount: A:0.11, C:0.18, G:0.01, T:0.71
Consensus pattern (17 bp):
TTTTTCTTTTTCAATTT
Found at i:69365003 original size:13 final size:13
Alignment explanation
Indices: 69364974--69365004 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
69364964 TTCCTTCTTT
69364974 TTTTCTTTTTCAA
1 TTTTCTTTTTCAA
69364987 -TTTCTTTTTCAA
1 TTTTCTTTTTCAA
69364999 TTTTCT
1 TTTTCT
69365005 CTTCTTGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTCTTTTTCAA
Found at i:69368893 original size:29 final size:29
Alignment explanation
Indices: 69368830--69368893 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
69368820 AAGCATGACT
* *
69368830 ATGAATGTGATTTGGGCCTAATGGGCCAT
1 ATGAATGTGATTTGGGACTAATGGGCCAA
*
69368859 ACGAATGTGATTTGGGACTAATGGGCCAA
1 ATGAATGTGATTTGGGACTAATGGGCCAA
69368888 ATGAAT
1 ATGAAT
69368894 AAGATTGAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (29 bp):
ATGAATGTGATTTGGGACTAATGGGCCAA
Found at i:69372896 original size:24 final size:24
Alignment explanation
Indices: 69372869--69372992 Score: 205
Period size: 24 Copynumber: 5.2 Consensus size: 24
69372859 GGCCTTACCT
* * *
69372869 CTTTTAATAAATGGGGCAAAATCC
1 CTTTTAATAACTGGGGCATAAGCC
69372893 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
69372917 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
69372941 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
69372965 CTTTTAATAACT-GGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
69372988 CTTTT
1 CTTTT
69372993 CCACTTCCTC
Statistics
Matches: 95, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
23 16 0.17
24 79 0.83
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:69373067 original size:20 final size:20
Alignment explanation
Indices: 69373042--69373108 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
69373032 TTATGAATAC
69373042 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
69373062 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
69373082 GTCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
*
69373102 ACCATGT
1 ATCATGT
69373109 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:69373073 original size:11 final size:11
Alignment explanation
Indices: 69373042--69373098 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
69373032 TTATGAATAC
69373042 ATCATGTGCAT
1 ATCATGTGCAT
*
69373053 ATCA--TACAT
1 ATCATGTGCAT
69373062 ATCATGTGCAT
1 ATCATGTGCAT
*
69373073 ATCA--TACAT
1 ATCATGTGCAT
*
69373082 GTCATGTGCAT
1 ATCATGTGCAT
69373093 ATCATG
1 ATCATG
69373099 CATACCATGT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:69373186 original size:24 final size:24
Alignment explanation
Indices: 69373156--69373215 Score: 120
Period size: 24 Copynumber: 2.5 Consensus size: 24
69373146 CTAGGGGTAT
69373156 AATGGTCATTTTTACCTAGGGCAA
1 AATGGTCATTTTTACCTAGGGCAA
69373180 AATGGTCATTTTTACCTAGGGCAA
1 AATGGTCATTTTTACCTAGGGCAA
69373204 AATGGTCATTTT
1 AATGGTCATTTT
69373216 CATGTTATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (24 bp):
AATGGTCATTTTTACCTAGGGCAA
Found at i:69380958 original size:24 final size:24
Alignment explanation
Indices: 69380921--69381099 Score: 322
Period size: 24 Copynumber: 7.4 Consensus size: 24
69380911 CTGGATGTCT
*
69380921 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
69380946 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
69380970 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
69380994 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
69381018 AGCCCTTTTTAATAACTGGGGCATA
1 AGCCC-TTTTAATAACTGGGGCATA
69381043 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
69381067 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
69381091 AGCCCTTTT
1 AGCCCTTTT
69381100 GCACTTCCTC
Statistics
Matches: 150, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
24 122 0.81
25 28 0.19
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:69381040 original size:73 final size:73
Alignment explanation
Indices: 69380921--69381099 Score: 324
Period size: 73 Copynumber: 2.5 Consensus size: 73
69380911 CTGGATGTCT
* *
69380921 AGCCTCTTTTAATAACTGGGGCAAAAGCCC-TTTTAATAACTGGGGCATAAGCCCTTTTGATAAC
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGGGGCATAAGCCCTTTTAATAAC
69380985 TGGGGCATA
65 TGGGGCATA
69380994 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGGGGCATAAGCCCTTTTAATAACT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGGGGCATAAGCCCTTTTAATAACT
69381059 GGGGCATA
66 GGGGCATA
69381067 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
69381100 GCACTTCCTC
Statistics
Matches: 103, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
72 24 0.23
73 79 0.77
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (73 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGGGGCATAAGCCCTTTTAATAACT
GGGGCATA
Found at i:69381175 original size:20 final size:20
Alignment explanation
Indices: 69381150--69381208 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
69381140 TATGAATACA
69381150 TCATGTGCATATCATACATC
1 TCATGTGCATATCATACATC
*
69381170 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATC
69381190 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
69381209 ACCATGTTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATC
Found at i:69381214 original size:20 final size:19
Alignment explanation
Indices: 69381145--69381215 Score: 99
Period size: 20 Copynumber: 3.6 Consensus size: 19
69381135 GCATTTATGA
69381145 ATACAT-CATGTGCATATC
1 ATACATCCATGTGCATATC
69381163 ATACATCTCATGTGCATATC
1 ATACATC-CATGTGCATATC
*
69381183 ATACATGTCATGTGCATATC
1 ATACAT-CCATGTGCATATC
69381203 ATACATACCATGT
1 ATACAT-CCATGT
69381216 TTATTAAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
18 6 0.13
20 41 0.87
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (19 bp):
ATACATCCATGTGCATATC
Found at i:69392772 original size:27 final size:26
Alignment explanation
Indices: 69392742--69392797 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
69392732 CTTTTTATTT
*
69392742 AATTATAACTTA-TTAATCCAATTACCA
1 AATTA-AACTTATTTAATCC-ATTACAA
*
69392769 AATTAACCTTATTTAATCCATTACAA
1 AATTAAACTTATTTAATCCATTACAA
69392795 AAT
1 AAT
69392798 AACATATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.38
Consensus pattern (26 bp):
AATTAAACTTATTTAATCCATTACAA
Found at i:69392809 original size:25 final size:26
Alignment explanation
Indices: 69392746--69392809 Score: 71
Period size: 25 Copynumber: 2.5 Consensus size: 26
69392736 TTATTTAATT
69392746 ATAAC-TTATTAATCCAATTACCAAA
1 ATAACATTATTAATCCAATTACCAAA
* *
69392771 TTAACCTTATTTAATCC-ATTA-CAAA
1 ATAACATTA-TTAATCCAATTACCAAA
69392796 ATAACATATATTAA
1 ATAACAT-TATTAA
69392810 GGCCATTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 17 0.52
26 9 0.27
27 7 0.21
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (26 bp):
ATAACATTATTAATCCAATTACCAAA
Found at i:69395200 original size:23 final size:23
Alignment explanation
Indices: 69395170--69395314 Score: 157
Period size: 23 Copynumber: 6.0 Consensus size: 23
69395160 AGGAAGTGAA
69395170 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
69395193 AAAGGGCTTATGCCACAGTTATC
1 AAAGGGCTTATGCCCCAGTTATT
69395216 AAAGGGCTTATGCCCCAGGCTTATTT
1 AAAGGGCTTATGCCCCA-G-TTA-TT
*
69395242 ATTAAGGGCTTATGCCCCAGTTATAA
1 A--AAGGGCTTATGCCCCAGTTAT-T
*
69395268 AAAGGGCTTTTGCCCCAGTTACTT
1 AAAGGGCTTATGCCCCAGTTA-TT
*
69395292 AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAG-GGCTTATGCC-CCAGTTAT
69395315 ATGATGAAGC
Statistics
Matches: 104, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
23 37 0.36
24 29 0.28
25 15 0.14
26 6 0.06
27 1 0.01
28 16 0.15
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:69395276 original size:52 final size:48
Alignment explanation
Indices: 69395168--69395300 Score: 164
Period size: 51 Copynumber: 2.7 Consensus size: 48
69395158 GGAGGAAGTG
69395168 AAAAAGGGCTTATGCCCCA-GTTATTAAAGGGCTTATGCCACAGTTAT
1 AAAAAGGGCTTATGCCCCAGGTTATTAAAGGGCTTATGCCACAGTTAT
* *
69395215 -CAAAGGGCTTATGCCCCAGGCTTATTTATTAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGG-TTA-TTA--AAGGGCTTATGCCACAGTTAT
*
69395266 AAAAAGGGCTTTTGCCCCA-GTTACTTAAAGAGGCT
1 AAAAAGGGCTTATGCCCCAGGTTA-TTAAAG-GGCT
69395301 AGGCCTCCAG
Statistics
Matches: 74, Mismatches: 5, Indels: 12
0.81 0.05 0.13
Matches are distributed among these distances:
46 17 0.23
47 1 0.01
48 6 0.08
49 7 0.09
50 6 0.08
51 21 0.28
52 16 0.22
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (48 bp):
AAAAAGGGCTTATGCCCCAGGTTATTAAAGGGCTTATGCCACAGTTAT
Found at i:69395562 original size:31 final size:31
Alignment explanation
Indices: 69395508--69395571 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
69395498 CATTTACAGT
*
69395508 AAAGGCTTCAGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* ** *
69395539 AAAGGCTTCGGCCCAGTGTTATGACATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
69395570 AA
1 AA
69395572 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:69401997 original size:25 final size:25
Alignment explanation
Indices: 69401968--69402015 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69401958 TTATAACATG
* * *
69401968 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
69401993 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
69402016 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:69402099 original size:11 final size:11
Alignment explanation
Indices: 69402063--69402118 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
69402053 CATGGTATGT
69402063 ATGATATGCAC
1 ATGATATGCAC
* *
69402074 ATGACATG--T
1 ATGATATGCAC
69402083 ATGATATGCAC
1 ATGATATGCAC
*
69402094 ATGATATG--T
1 ATGATATGCAC
69402103 ATGATATGCAC
1 ATGATATGCAC
69402114 ATGAT
1 ATGAT
69402119 GTACTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:69402118 original size:20 final size:20
Alignment explanation
Indices: 69402052--69402118 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
69402042 ATTTTGATAA
*
69402052 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
69402072 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
69402092 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
69402112 ACATGAT
1 ACATGAT
69402119 GTACTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:69402199 original size:23 final size:23
Alignment explanation
Indices: 69402169--69402308 Score: 192
Period size: 23 Copynumber: 6.0 Consensus size: 23
69402159 AGGAAGTGAA
69402169 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
69402192 AAAGGGCTTATGCCACAGTTATC
1 AAAGGGCTTATGCCCCAGTTATT
69402215 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
69402238 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
69402262 AAAGGGCTTTTGCCCCAGTTACTT
1 AAAGGGCTTATGCCCCAGTTA-TT
*
69402286 AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAG-GGCTTATGCC-CCAGTTAT
69402309 ATGATAAAGC
Statistics
Matches: 104, Mismatches: 9, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
23 64 0.62
24 29 0.28
25 11 0.11
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:69402540 original size:31 final size:31
Alignment explanation
Indices: 69402502--69402565 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
69402492 CGTTTACAGT
*
69402502 AAAGGCTTCGACCCAGT-TATATGAAATTTGA
1 AAAGGCTTCGACCCAGTGT-TATGAAATATGA
*
69402533 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTGTTATGAAATATGA
69402564 AA
1 AA
69402566 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTGTTATGAAATATGA
Found at i:69403859 original size:27 final size:28
Alignment explanation
Indices: 69403825--69403878 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
69403815 ACATAGGGGA
*
69403825 AAAATAGTCATCTTATCGTATA-AGGGT
1 AAAATAGTCATCTTATCCTATATAGGGT
*
69403852 AAAATAGTCATTTTATCCTATATAGGG
1 AAAATAGTCATCTTATCCTATATAGGG
69403879 GGTCTAGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (28 bp):
AAAATAGTCATCTTATCCTATATAGGGT
Found at i:69417027 original size:23 final size:23
Alignment explanation
Indices: 69416997--69417132 Score: 68
Period size: 23 Copynumber: 5.8 Consensus size: 23
69416987 GGGCTCGCCA
69416997 TAGCTCATAAGAGCTTACTATTT
1 TAGCTCATAAGAGCTTACTATTT
** * *
69417020 TAGCTCATTGGAGCTTACCAATT
1 TAGCTCATAAGAGCTTACTATTT
*
69417043 CAGCTCCA-AAGAGCTTA-T-TGTT
1 TAGCT-CATAAGAGCTTACTAT-TT
* **
69417065 CA-CTACAATAA-AGCTTACCGTTT
1 TAGCT-C-ATAAGAGCTTACTATTT
*
69417088 TCAGCTCA-ATAGAGCTTACTGTTT
1 T-AGCTCATA-AGAGCTTACTATTT
69417112 ATCAGCTCAGTAAGAGCTTAC
1 -T-AGCTCA-TAAGAGCTTAC
69417133 CGACCATGAC
Statistics
Matches: 87, Mismatches: 13, Indels: 23
0.71 0.11 0.19
Matches are distributed among these distances:
21 3 0.03
22 12 0.14
23 36 0.41
24 16 0.18
25 10 0.11
26 9 0.10
27 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (23 bp):
TAGCTCATAAGAGCTTACTATTT
Found at i:69417131 original size:26 final size:24
Alignment explanation
Indices: 69417070--69417134 Score: 85
Period size: 24 Copynumber: 2.6 Consensus size: 24
69417060 TTGTTCACTA
*
69417070 CAATAAAGCTTACCGTTTTCAGCT
1 CAATAGAGCTTACCGTTTTCAGCT
*
69417094 CAATAGAGCTTACTGTTTATCAGCT
1 CAATAGAGCTTACCGTTT-TCAGCT
*
69417119 CAGTAAGAGCTTACCG
1 CAAT-AGAGCTTACCG
69417135 ACCATGACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 16 0.46
25 9 0.26
26 10 0.29
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (24 bp):
CAATAGAGCTTACCGTTTTCAGCT
Found at i:69418048 original size:30 final size:30
Alignment explanation
Indices: 69418014--69418072 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
69418004 GGACAGGGAC
* *
69418014 ATGGGCGTGTGTCTTAGCCGTGTGTGACAA
1 ATGGGCGAGTGTCTTAACCGTGTGTGACAA
69418044 ATGGGCGAGTGTCTTAACCGTGTGTGACA
1 ATGGGCGAGTGTCTTAACCGTGTGTGACA
69418073 CACGGTCATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.29
Consensus pattern (30 bp):
ATGGGCGAGTGTCTTAACCGTGTGTGACAA
Found at i:69425866 original size:28 final size:29
Alignment explanation
Indices: 69425835--69425890 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
69425825 CAAACATGCA
69425835 TATGGCCCACTAGGCCC-AATCACATTCG
1 TATGGCCCACTAGGCCCAAATCACATTCG
*
69425863 TATGGCCCATTAGGCCCAAATCACATTC
1 TATGGCCCACTAGGCCCAAATCACATTC
69425891 ATAGTCATGC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.27, C:0.34, G:0.16, T:0.23
Consensus pattern (29 bp):
TATGGCCCACTAGGCCCAAATCACATTCG
Found at i:69433590 original size:28 final size:29
Alignment explanation
Indices: 69433559--69433613 Score: 94
Period size: 28 Copynumber: 1.9 Consensus size: 29
69433549 CATACATGCA
69433559 TATGGCCCACTAGGCCC-AATCACATTTG
1 TATGGCCCACTAGGCCCAAATCACATTTG
*
69433587 TATGGCCCATTAGGCCCAAATCACATT
1 TATGGCCCACTAGGCCCAAATCACATT
69433614 CATAGTCATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 16 0.64
29 9 0.36
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (29 bp):
TATGGCCCACTAGGCCCAAATCACATTTG
Found at i:69436427 original size:12 final size:13
Alignment explanation
Indices: 69436385--69436432 Score: 50
Period size: 12 Copynumber: 3.9 Consensus size: 13
69436375 AGATACCTAA
69436385 ATAATATTAAAAT
1 ATAATATTAAAAT
*
69436398 ATACATA--ATAAT
1 ATA-ATATTAAAAT
69436410 AT-ATA-TAAAAT
1 ATAATATTAAAAT
69436421 ATAATATTAAAA
1 ATAATATTAAAA
69436433 ACTTATGTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
10 3 0.10
11 6 0.21
12 9 0.31
13 8 0.28
14 3 0.10
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (13 bp):
ATAATATTAAAAT
Found at i:69436854 original size:18 final size:18
Alignment explanation
Indices: 69436831--69436877 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
69436821 AAATTAACAC
*
69436831 ATAATAATAATAATGATG
1 ATAATAATAATAATAATG
* *
69436849 ATAATAACAATATTAATG
1 ATAATAATAATAATAATG
*
69436867 ATATTAATAAT
1 ATAATAATAAT
69436878 TCAAAAATAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.36
Consensus pattern (18 bp):
ATAATAATAATAATAATG
Found at i:69438891 original size:72 final size:72
Alignment explanation
Indices: 69438656--69439217 Score: 615
Period size: 73 Copynumber: 7.5 Consensus size: 72
69438646 ACATGTGAAC
* *
69438656 TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
* *
69438720 CAGCGTGTCC
63 CAACGTGTCT
* *
69438730 TGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCA
69438795 ACGTGTCT
65 ACGTGTCT
69438803 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
*
69438868 TGTGTCT
66 CGTGTCT
* * * * ** *
69438875 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTCAAAAACATAATAATGAAAACAGAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT-TTT-GAAAACAGAA-ATTG-AAA-TTAC
* * ** *
69438940 ATGGAAAATACCTCGGT
61 CT-CAACGT--GTC--T
* * ** *
69438957 GTGACCTGAG-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGA
1 -TGA---G-GCTC-AA-CTCATTTCTCGCAATATGAGTTGA---ATTTTG-AAAACAGAAATTGA
* *
69439021 AATTACCTCAGCGTGTCC
55 AATTACCTCAACGTGTCT
*
69439039 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCA
69439104 ACGTGTCT
65 ACGTGTCT
69439112 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
*
69439177 TGTGTCT
66 CGTGTCT
*
69439184 TGAGGCTCAACTCATTTCTTGCAATATGAGTTGA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
69439218 TTCTTTCAAA
Statistics
Matches: 414, Mismatches: 49, Indels: 52
0.80 0.10 0.10
Matches are distributed among these distances:
72 132 0.32
73 148 0.36
74 37 0.09
75 3 0.01
76 25 0.06
77 4 0.01
78 5 0.01
80 2 0.00
81 3 0.01
82 1 0.00
83 3 0.01
84 2 0.00
86 4 0.01
87 4 0.01
88 25 0.06
89 3 0.01
90 11 0.03
91 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (72 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
CGTGTCT
Found at i:69439132 original size:309 final size:308
Alignment explanation
Indices: 69438560--69439476 Score: 1269
Period size: 309 Copynumber: 2.9 Consensus size: 308
69438550 CTTACTCGGC
* * * * *
69438560 ATGTGATCTTGA-GCCCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAACAGACAT-TA
1 ATGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTCAAAAACATA-ATATG
* * ** * * *
69438622 AAAACAAAAACT--AAAGATATCTCAACATGTGAACTGAGGCTCAACTCACTTTTCGCAATATGA
64 AAAACAGAAA-TGGAAA-ATACCTC--GGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
*
69438685 GTTGA-TTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTC
125 GTTGATTTTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTC
*
69438748 TCACAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAA
190 TCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAA
69438813 CTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
255 CTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
69438867 ATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTCAAAAACATAATAATGA
1 ATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTCAAAAACATAAT-ATGA
69438932 AAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
65 AAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
69438997 TTTTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
130 TTTTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
69439062 ATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAT
195 ATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAT
69439127 TTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
260 TTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
*
69439176 ATGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTGATTCTTTCAAAAACATAATTATGA
1 ATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTCAAAAACATAA-TATGA
69439241 AAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
65 AAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
69439306 TTTTTTTGAAAAATAGAAATCAAAAGGCTTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCA
130 TTTTTTT------T-GAAA--AACA-G--AAATTGAAATTACCTCAGC--GTGTCCTGAGGCTCA
** * * * * * *
69439371 ACTCACCTCTCGCAATATGAGTTGAA-ATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCC
181 ACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-GCAGAAATTGAAAATACCTCAACGTGTCT
* ** * *
69439434 CGAGGCTCAACTCACCTCTTGCAATATGAGCTG-ATTTTGAAAA
245 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA
69439477 AGTAGAAATT
Statistics
Matches: 554, Mismatches: 32, Indels: 34
0.89 0.05 0.05
Matches are distributed among these distances:
306 6 0.01
307 78 0.14
308 17 0.03
309 317 0.57
310 4 0.01
315 1 0.00
316 4 0.01
318 3 0.01
319 1 0.00
321 30 0.05
322 54 0.10
323 39 0.07
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30
Consensus pattern (308 bp):
ATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTCAAAAACATAATATGAA
AACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAA
TATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT
TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
Found at i:69439208 original size:145 final size:146
Alignment explanation
Indices: 69438929--69439486 Score: 451
Period size: 145 Copynumber: 3.6 Consensus size: 146
69438919 AACATAATAA
***
69438929 TGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TGAAAACAGAAATGGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
69438994 TGATTTTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTC
66 TGA--TATTTTGAAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCATTTCTC
69439059 GCAATATGAGTTGAATTT
129 GCAATATGAGTTGAATTT
* * * **
69439077 TGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TGAAAA-CAGAAATGGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
69439142 TTGA-ATTTTG-AAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTTG
65 TTGATATTTTGAAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCATTTCTCG
69439205 CAATATGAGTTGATTCTTTCAAAAACATAATT
130 CAATATGAGTTG------------A-AT--TT
***
69439237 ATGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 -TGAAAACAGAAATGGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * **
69439302 TTGATTTTTTTGAAAAATAGAAATCAAAAGGCTTAATTGAAAATACCTCGGCGTGTGTCCTGAGG
65 TTGA-TATTTTG----A-A-AAA-C---A-G--AAATTGAAATTACCTCAAC--GTGTCCTGAGG
** *
69439367 CTCAACTCACCTCTCGCAATATGAGTTGAA-AT
114 CTCAACTCATTTCTCGCAATATGAGTTGAATTT
* * * * * * *
69439399 TAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAG
1 TGAAA-ACAGAAATGGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
69439464 CTG--ATTTTGAAAAAGTAGAAATT
65 TTGATATTTTGAAAAA-CAGAAATT
69439487 AAAAGGTTCA
Statistics
Matches: 329, Mismatches: 45, Indels: 73
0.74 0.10 0.16
Matches are distributed among these distances:
145 61 0.19
146 5 0.02
147 4 0.01
148 6 0.02
149 55 0.17
150 1 0.00
153 3 0.01
154 1 0.00
155 1 0.00
157 1 0.00
158 2 0.01
159 5 0.02
160 56 0.17
161 10 0.03
162 60 0.18
165 1 0.00
166 1 0.00
168 1 0.00
169 3 0.01
170 1 0.00
173 1 0.00
174 1 0.00
176 14 0.04
178 35 0.11
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (146 bp):
TGAAAACAGAAATGGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATATTTTGAAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCATTTCTCGC
AATATGAGTTGAATTT
Found at i:69439299 original size:88 final size:87
Alignment explanation
Indices: 69439145--69439395 Score: 281
Period size: 88 Copynumber: 2.8 Consensus size: 87
69439135 ATATGAGTTG
* * ** * ** *
69439145 AATTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTTGCAATA
1 AATTATGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
69439210 TGAGTTGATTCTTTCAAAAACAT
66 TGAGTTGATTCTTTCAAAAA-AT
* *
69439233 AATTATGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
1 AATTATGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
* **
69439298 TGAGTTGATTTTTTTGAAAAAT
66 TGAGTTGATTCTTTCAAAAAAT
* * **
69439320 AGA-AATCAAAAGGC-TTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCG
1 A-ATTATGAAAA--CAGAAATTGAAAATACCTC-G-GTGTGTCCTGAGGCTCAACTCACCTCTCG
69439383 CAATATGAGTTGA
61 CAATATGAGTTGA
69439396 AATTAAAACA
Statistics
Matches: 139, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
87 9 0.06
88 87 0.63
89 2 0.01
90 41 0.29
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (87 bp):
AATTATGAAAACAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTCTTTCAAAAAAT
Found at i:69439811 original size:78 final size:75
Alignment explanation
Indices: 69439618--69439884 Score: 385
Period size: 76 Copynumber: 3.5 Consensus size: 75
69439608 AGTGTGTAAT
* * *
69439618 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTAAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAACAGAAATTGAAATTACC
*
69439682 TCAGCATGTGAAC
66 TCAGC--GTG-TC
*
69439695 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTT-AAAACAGAAATTGAAATTAC
69439759 CTCAGCGTGTC
65 CTCAGCGTGTC
**
69439770 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAACAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAA-AACAGAAATTGAAATTAC
**
69439835 AACAGCGTGTC
65 CTCAGCGTGTC
*
69439846 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
69439885 GAAAAACAAA
Statistics
Matches: 173, Mismatches: 13, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
75 4 0.02
76 136 0.79
77 8 0.05
78 25 0.14
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (75 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAACAGAAATTGAAATTACC
TCAGCGTGTC
Found at i:69440021 original size:69 final size:70
Alignment explanation
Indices: 69439902--69440075 Score: 194
Period size: 69 Copynumber: 2.5 Consensus size: 70
69439892 AAAAATTAAA
* * * * * * **
69439902 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACATAAAATAAAAATACATCAACGTG
69439966 CCCCG
66 CCCCG
69439971 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAA-A-AAAATAAAAATACATCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACATAAAATAAAAATACATCAACGT
* **
69440034 GTCTTG
65 GCCCCG
*
69440040 AGGCTCAACTCA-TCTCTCGCAATATGAATTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
69440076 CCTTGGAAAG
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
68 1 0.01
69 79 0.88
70 6 0.07
71 4 0.04
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACATAAAATAAAAATACATCAACGTG
CCCCG
Found at i:69448375 original size:16 final size:17
Alignment explanation
Indices: 69448351--69448390 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
69448341 AGTATGAGAT
*
69448351 ATGCAATGAATGAATTC
1 ATGCAATGAATGAATGC
69448368 ATGC-ATGAATGAATGC
1 ATGCAATGAATGAATGC
69448384 ATG-AATG
1 ATGCAATG
69448391 TCAAATGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (17 bp):
ATGCAATGAATGAATGC
Found at i:69452327 original size:12 final size:13
Alignment explanation
Indices: 69452285--69452332 Score: 50
Period size: 12 Copynumber: 3.9 Consensus size: 13
69452275 AGATACCTAA
69452285 ATAATATTAAAAT
1 ATAATATTAAAAT
*
69452298 ATACATA--ATAAT
1 ATA-ATATTAAAAT
69452310 AT-ATA-TAAAAT
1 ATAATATTAAAAT
69452321 ATAATATTAAAA
1 ATAATATTAAAA
69452333 ACTTATGTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
10 3 0.10
11 6 0.21
12 9 0.31
13 8 0.28
14 3 0.10
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (13 bp):
ATAATATTAAAAT
Found at i:69452761 original size:21 final size:21
Alignment explanation
Indices: 69452732--69452787 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
69452722 ATTAACACAT
69452732 AATAATAATGATAATAATAAC
1 AATAATAATGATAATAATAAC
* *
69452753 AATATTAATGATATTAATAATTC
1 AATAATAATGATAATAATAA--C
*
69452776 AAAAATAATGAT
1 AATAATAATGAT
69452788 GATATTTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 18 0.62
23 11 0.38
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.34
Consensus pattern (21 bp):
AATAATAATGATAATAATAAC
Found at i:69459603 original size:43 final size:43
Alignment explanation
Indices: 69459557--69459711 Score: 190
Period size: 43 Copynumber: 3.6 Consensus size: 43
69459547 TATCAAGATG
* * *
69459557 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTATATTG
1 TGATTACATGTAAGACCATATCTGGGACATTGGCATCATATTA
* * *
69459600 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTA
1 TGATTACATGTAAGACCATATCTGGGACATTGGCATCATATTA
* *
69459643 TGATTTCATGTAAGACTC-TATCTGGGACAGTGGCATCGATA-TA
1 TGATTACATGTAAGAC-CATATCTGGGACATTGGCATC-ATATTA
*
69459686 TGATAACATGTAAGA-CATATCTGGGA
1 TGATTACATGTAAGACCATATCTGGGA
69459712 TATAGCATTG
Statistics
Matches: 98, Mismatches: 11, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 85 0.87
44 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (43 bp):
TGATTACATGTAAGACCATATCTGGGACATTGGCATCATATTA
Found at i:69464885 original size:50 final size:50
Alignment explanation
Indices: 69464670--69464885 Score: 256
Period size: 50 Copynumber: 4.3 Consensus size: 50
69464660 GCTAAATGAC
* * * *
69464670 CTTGAATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTGGAT
1 CTTGTATATTCGGCCACATAGGTATGCACATATGTGATATTATATTTGAT
** * * *
69464720 CTTGTATATTCGGATATAAAGGTATGCACAAATGTGATATTATATTTGGAT
1 CTTGTATATTCGGCCACATAGGTATGCACATATGTGATATTATATTT-GAT
* * * *
69464771 -TTGTATATTCAGCCATATAAGTAAGCACATATGTGATATTATATTTGAT
1 CTTGTATATTCGGCCACATAGGTATGCACATATGTGATATTATATTTGAT
* * *
69464820 CTTGCATATTTGGCCACATAGGTATGCATATATGTGATATTATAATTT-AT
1 CTTGTATATTCGGCCACATAGGTATGCACATATGTGATATTAT-ATTTGAT
69464870 CTTGTATATTCGGCCA
1 CTTGTATATTCGGCCA
69464886 AATGAATGAT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
49 3 0.02
50 128 0.93
51 7 0.05
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.40
Consensus pattern (50 bp):
CTTGTATATTCGGCCACATAGGTATGCACATATGTGATATTATATTTGAT
Found at i:69471684 original size:22 final size:22
Alignment explanation
Indices: 69471647--69471689 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
69471637 TGAGTTATTA
*
69471647 GGACTAAATTGAAAAAAAAATT
1 GGACTAAAATGAAAAAAAAATT
* *
69471669 GGACTAAAATGCAAAATAAAT
1 GGACTAAAATGAAAAAAAAAT
69471690 GAAATATATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.14, T:0.21
Consensus pattern (22 bp):
GGACTAAAATGAAAAAAAAATT
Found at i:69472641 original size:50 final size:49
Alignment explanation
Indices: 69472495--69472641 Score: 170
Period size: 50 Copynumber: 2.9 Consensus size: 49
69472485 ATTGGATCAA
* * * *
69472495 AGGTATGCACAAATGTGACATTATATTTGAATTTGTATATTCA-ACCATAT
1 AGGTATGCACATATGTGATATTATATTTG-ATTTGTATATT-AGGCCACAT
* * * *
69472545 AAGTAAGCACATATGTGATATTATATTTGATATTGCATATTTGGCCACAT
1 AGGTATGCACATATGTGATATTATATTTGAT-TTGTATATTAGGCCACAT
*
69472595 AGGTATGCATATATGTGATATTATATTTGATCTTGTATATTAGGCCA
1 AGGTATGCACATATGTGATATTATATTTGAT-TTGTATATTAGGCCA
69472642 AATGAATGAT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
49 2 0.02
50 79 0.98
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.39
Consensus pattern (49 bp):
AGGTATGCACATATGTGATATTATATTTGATTTGTATATTAGGCCACAT
Found at i:69476246 original size:29 final size:28
Alignment explanation
Indices: 69476180--69476315 Score: 134
Period size: 29 Copynumber: 4.8 Consensus size: 28
69476170 TACATACATG
*
69476180 CATATGGCCCA-CTAGGTCCAA-TCTCATT
1 CATATGGCCCATC-AGGCCCAATTC-CATT
* *
69476208 TATATGGCCCATCCGGCCCAATTCGCATT
1 CATATGGCCCATCAGGCCCAATTC-CATT
69476237 CATATGGCCCATCAGGCCCAATTCACATT
1 CATATGGCCCATCAGGCCCAATTC-CATT
* *
69476266 CATATGGCCCATTAGGCCCAA-TCTATTT
1 CATATGGCCCATCAGGCCCAATTCCA-TT
* *
69476294 AAATATGGCCCATCCGGCCCAA
1 -CATATGGCCCATCAGGCCCAA
69476316 ATCACATCAT
Statistics
Matches: 92, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.01
28 20 0.22
29 71 0.77
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATTCCATT
Found at i:69476284 original size:58 final size:57
Alignment explanation
Indices: 69476180--69476327 Score: 151
Period size: 58 Copynumber: 2.6 Consensus size: 57
69476170 TACATACATG
* * * *
69476180 CATATGGCCCA-CTAGGTCCAATCTCATTTATATGGCCCATCCGGCCCAATTCGCA-TT-
1 CATATGGCCCATC-AGGCCCAATCACATTCATATGGCCCATCAGGCCCAA-TC-CATTTA
* *
69476237 CATATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATCTATTTA
1 CATATGGCCCATCAGGCCCAA-TCACATTCATATGGCCCATCAGGCCCAATCCATTTA
* *
69476295 AATATGGCCCATCCGGCCCAAATCACA-TCATAT
1 CATATGGCCCATCAGGCCC-AATCACATTCATAT
69476328 TCATGCTCAC
Statistics
Matches: 78, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
56 1 0.01
57 28 0.36
58 47 0.60
59 2 0.03
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.26
Consensus pattern (57 bp):
CATATGGCCCATCAGGCCCAATCACATTCATATGGCCCATCAGGCCCAATCCATTTA
Found at i:69483081 original size:28 final size:28
Alignment explanation
Indices: 69483050--69483195 Score: 109
Period size: 29 Copynumber: 5.1 Consensus size: 28
69483040 ACATACATGC
69483050 ATATGGCCCACTAGGCCAAATCTCATTT
1 ATATGGCCCACTAGGCCAAATCTCATTT
* * * *
69483078 ATATGGCCCA-TCCGGCCTAATTCGCATTC
1 ATATGGCCCACT-AGGCC-AAATCTCATTT
* * * *
69483107 ATATGG-CCAATCAGGCCCAATTTACATTC
1 ATATGGCCCACT-AGGCCAAATCT-CATTT
* *
69483136 ATATGGCCCATTAGGCCCAATCTCATTT
1 ATATGGCCCACTAGGCCAAATCTCATTT
* * *
69483164 ATATGGCCCATCCAGTCCAAATCACA-TT
1 ATATGGCCCA-CTAGGCCAAATCTCATTT
69483192 ATAT
1 ATAT
69483196 TCATGCTCAC
Statistics
Matches: 95, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
27 1 0.01
28 39 0.41
29 51 0.54
30 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCAAATCTCATTT
Found at i:69483123 original size:29 final size:29
Alignment explanation
Indices: 69483044--69483175 Score: 126
Period size: 29 Copynumber: 4.6 Consensus size: 29
69483034 ACCCCTACAT
* *
69483044 ACATGCATATGGCCCA-CTAGG-CCAAATC
1 ACATTCATATGGCCCATC-AGGCCCAATTC
* * * *
69483072 TCATTTATATGGCCCATCCGGCCTAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* * *
69483101 GCATTCATATGGCCAATCAGGCCCAATTT
1 ACATTCATATGGCCCATCAGGCCCAATTC
*
69483130 ACATTCATATGGCCCATTAGGCCCAA-TC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* *
69483158 TCATTTATATGGCCCATC
1 ACATTCATATGGCCCATC
69483176 CAGTCCAAAT
Statistics
Matches: 83, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
28 31 0.37
29 52 0.63
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAATTC
Found at i:69483277 original size:17 final size:18
Alignment explanation
Indices: 69483255--69483288 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69483245 TGCCTAATAT
69483255 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
69483272 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
69483289 TTTGACCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:69491547 original size:48 final size:48
Alignment explanation
Indices: 69491476--69491568 Score: 177
Period size: 48 Copynumber: 1.9 Consensus size: 48
69491466 TCTAAATCAA
69491476 AGATTGAATCTGTACCTATTGTTTGTGAGTTTTCAGATGTATTTCCAT
1 AGATTGAATCTGTACCTATTGTTTGTGAGTTTTCAGATGTATTTCCAT
*
69491524 AGATTGAATCTGTACCTATTGTTTGTGAGTTTTCAGATTTATTTC
1 AGATTGAATCTGTACCTATTGTTTGTGAGTTTTCAGATGTATTTC
69491569 TAGAAGAATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.23, C:0.12, G:0.18, T:0.47
Consensus pattern (48 bp):
AGATTGAATCTGTACCTATTGTTTGTGAGTTTTCAGATGTATTTCCAT
Found at i:69494723 original size:24 final size:24
Alignment explanation
Indices: 69494665--69494817 Score: 127
Period size: 23 Copynumber: 6.3 Consensus size: 24
69494655 GCAGACTACC
*
69494665 TCAGCTCGTATGAGCTTACTGATATA
1 TCAGCTCGTAAGAGCTTACTG-T-TA
* *
69494691 TCAGCTCGTAAAAGCTTACTGTTC
1 TCAGCTCGTAAGAGCTTACTGTTA
*
69494715 TCAGCTCGTCAGAGCTTACTG-TA
1 TCAGCTCGTAAGAGCTTACTGTTA
*
69494738 TCAGCTC-AATAGAGCTTACTG-TA
1 TCAGCTCGTA-AGAGCTTACTGTTA
* *
69494761 TCAGCTC-AATAGAGCTTACTGTCCA
1 TCAGCTCGTA-AGAGCTTACTGT-TA
* * *
69494786 TCAGCTCAGGAGGAGCTTACTGTCA
1 TCAGCTC-GTAAGAGCTTACTGTTA
69494811 T-AGCTCG
1 TCAGCTCG
69494818 AAATAGTGAA
Statistics
Matches: 111, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
23 43 0.39
24 25 0.23
25 12 0.11
26 30 0.27
27 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (24 bp):
TCAGCTCGTAAGAGCTTACTGTTA
Found at i:69494974 original size:19 final size:19
Alignment explanation
Indices: 69494950--69495013 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
69494940 AAAATCTATG
69494950 TGTTATACGGATGAATTAT
1 TGTTATACGGATGAATTAT
* *
69494969 TGTTATATGGATGAAGTAT
1 TGTTATACGGATGAATTAT
* * *
69494988 TGTTTAAACGGATGAGTTAC
1 TG-TTATACGGATGAATTAT
69495008 TGTTAT
1 TGTTAT
69495014 CGAATGATTT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
19 22 0.61
20 14 0.39
ACGTcount: A:0.30, C:0.05, G:0.23, T:0.42
Consensus pattern (19 bp):
TGTTATACGGATGAATTAT
Found at i:69498064 original size:21 final size:21
Alignment explanation
Indices: 69498024--69498064 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
69498014 AATTAAATAA
*
69498024 TAATAAAACTTAAGACAATTT
1 TAATAAAAATTAAGACAATTT
* *
69498045 TAATAAAAATTGAGAGAATT
1 TAATAAAAATTAAGACAATT
69498065 GAGAGAAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.32
Consensus pattern (21 bp):
TAATAAAAATTAAGACAATTT
Found at i:69498112 original size:26 final size:26
Alignment explanation
Indices: 69498059--69498135 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
69498049 AAAAATTGAG
69498059 AGAATTGAGAGAAAATT-AAAAAAAT
1 AGAATTGAGAGAAAATTAAAAAAAAT
69498084 AGAATTGAGAGAAAATTAAAAAAAAT
1 AGAATTGAGAGAAAATTAAAAAAAAT
*
69498110 AGAATTGAGAGAAAGTTTAAAAAAAA
1 AGAATTGAGAGAAA-ATTAAAAAAAA
69498136 GAAAATTTCG
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 17 0.35
26 22 0.45
27 10 0.20
ACGTcount: A:0.64, C:0.00, G:0.17, T:0.19
Consensus pattern (26 bp):
AGAATTGAGAGAAAATTAAAAAAAAT
Found at i:69498173 original size:36 final size:36
Alignment explanation
Indices: 69498129--69498197 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
69498119 AGAAAGTTTA
69498129 AAAAAAAGAAAATTTCGTAATAATTTTTTTTAAATT
1 AAAAAAAGAAAATTTCGTAATAATTTTTTTTAAATT
*
69498165 AAAAAAAGAAAATTTCGTAATAGTTTTTTTTAA
1 AAAAAAAGAAAATTTCGTAATAATTTTTTTTAA
69498198 CCACTGGGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (36 bp):
AAAAAAAGAAAATTTCGTAATAATTTTTTTTAAATT
Found at i:69500283 original size:29 final size:29
Alignment explanation
Indices: 69500241--69500296 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
69500231 AATAGATTTG
*
69500241 AATAGATTTGAAGAGTAAATCAAATGACT
1 AATAGATTTCAAGAGTAAATCAAATGACT
*
69500270 AATAGATTTCAAGAGTAAATTAAATGA
1 AATAGATTTCAAGAGTAAATCAAATGA
69500297 ATATGAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.50, C:0.05, G:0.16, T:0.29
Consensus pattern (29 bp):
AATAGATTTCAAGAGTAAATCAAATGACT
Found at i:69501278 original size:27 final size:28
Alignment explanation
Indices: 69501217--69501291 Score: 100
Period size: 27 Copynumber: 2.7 Consensus size: 28
69501207 ATAAAAGTTC
69501217 AAGGACCAACTAGGTACAAAAAAATTTG
1 AAGGACCAACTAGGTACAAAAAAATTTG
*
69501245 AAGGACCAACTAGGTAC-AACAAATTT-
1 AAGGACCAACTAGGTACAAAAAAATTTG
* *
69501271 TAGAGACCAACTAGATACAAA
1 AAG-GACCAACTAGGTACAAA
69501292 TGAATAAGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 2 0.05
27 21 0.50
28 19 0.45
ACGTcount: A:0.49, C:0.17, G:0.16, T:0.17
Consensus pattern (28 bp):
AAGGACCAACTAGGTACAAAAAAATTTG
Found at i:69504109 original size:25 final size:25
Alignment explanation
Indices: 69504080--69504157 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
69504070 GAATGGCCAA
69504080 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
69504105 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
69504127 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
69504152 TGTGAT
1 TGTGAT
69504158 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 9 0.22
23 8 0.20
24 8 0.20
25 15 0.38
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATATG
Found at i:69504132 original size:22 final size:22
Alignment explanation
Indices: 69504105--69504226 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
69504095 CATGCATATG
69504105 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
69504127 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
69504150 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
* * * *
69504174 TGTGATGAATG-TGAATATGCATATA
1 TGTGAT-AAGGCCGAAT-GGC-CA-A
*
69504199 TATGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
69504221 TGTGAT
1 TGTGAT
69504227 GAATGTGAAC
Statistics
Matches: 72, Mismatches: 14, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
22 25 0.35
23 14 0.19
24 14 0.19
25 19 0.26
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:69504292 original size:47 final size:47
Alignment explanation
Indices: 69503985--69504316 Score: 486
Period size: 47 Copynumber: 7.1 Consensus size: 47
69503975 TTAGGATTTT
** * * *
69503985 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
69504032 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
69504079 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
69504126 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
69504173 ATGTGATGAATGTGAATATGCATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
69504220 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
69504267 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGTCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
69504314 ATG
1 ATG
69504317 CGAAATGTGT
Statistics
Matches: 264, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 261 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:69504346 original size:46 final size:46
Alignment explanation
Indices: 69504290--69504472 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
69504280 GGAAGTGTAT
* * *
69504290 ATATGTGGTAAAGTCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
69504336 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
69504382 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
69504428 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
69504473 TGTATATATA
Statistics
Matches: 128, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 128 1.00
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:69505605 original size:22 final size:21
Alignment explanation
Indices: 69505579--69505635 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
69505569 GGTAACAAAC
69505579 ATAAACAAAAAATATATAATAT
1 ATAAA-AAAAAATATATAATAT
* ***
69505601 ATAAATAAGAAGCCTATAATAT
1 ATAAA-AAAAAATATATAATAT
69505623 ATAAAAAAAAATA
1 ATAAAAAAAAATA
69505636 ATATTGTATT
Statistics
Matches: 26, Mismatches: 9, Indels: 1
0.72 0.25 0.03
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.67, C:0.05, G:0.04, T:0.25
Consensus pattern (21 bp):
ATAAAAAAAAATATATAATAT
Found at i:69513388 original size:46 final size:46
Alignment explanation
Indices: 69513321--69513492 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
69513311 AACCCGCCCC
*
69513321 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
69513367 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * * *
69513415 TCA-CGAACTCGGGCTCAACTCAAGGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
69513460 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
69513493 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 58 0.56
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:69513454 original size:93 final size:93
Alignment explanation
Indices: 69513326--69513496 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
69513316 GCCCCTAAGT
* *
69513326 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69513391 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
69513419 GAACTCGGGCTCAACTCAAGGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69513484 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69513497 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69513953 original size:30 final size:30
Alignment explanation
Indices: 69513919--69513978 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
69513909 ATTTAATATG
69513919 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
69513949 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
69513979 GGCTGGGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:69516126 original size:40 final size:40
Alignment explanation
Indices: 69516042--69516225 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
69516032 TTGAATGCTG
* * * *
69516042 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
69516081 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * **
69516122 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACCAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
69516162 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
69516202 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
69516226 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 110 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:69516246 original size:39 final size:39
Alignment explanation
Indices: 69516122--69516272 Score: 117
Period size: 40 Copynumber: 3.8 Consensus size: 39
69516112 AGTTATTAAT
* ** * * *
69516122 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATAC-CAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAA
** *
69516162 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
69516202 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
69516242 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
69516273 GAGCTATATC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 29 0.31
40 64 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:69518956 original size:27 final size:27
Alignment explanation
Indices: 69518918--69518972 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
69518908 GAACAACTTT
69518918 AATGGAACGCTCGATACCGGTGGCCAC
1 AATGGAACGCTCGATACCGGTGGCCAC
69518945 AATGGAACGCTCGATACCGGTGGCCAC
1 AATGGAACGCTCGATACCGGTGGCCAC
69518972 A
1 A
69518973 TACTTTCATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.29, G:0.29, T:0.15
Consensus pattern (27 bp):
AATGGAACGCTCGATACCGGTGGCCAC
Found at i:69534351 original size:46 final size:46
Alignment explanation
Indices: 69534284--69534412 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
69534274 TGTAACCCGC
* * * * *
69534284 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
69534330 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
69534376 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69534413 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:69534869 original size:30 final size:30
Alignment explanation
Indices: 69534835--69534894 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
69534825 ATTTAATACG
69534835 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
69534865 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
69534895 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:69538223 original size:20 final size:20
Alignment explanation
Indices: 69538198--69538262 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
69538188 TGTGTTAGAT
69538198 TGGTTTAGGTTTGTTTTCTG
1 TGGTTTAGGTTTGTTTTCTG
*
69538218 TGG-TT---TTTGTTTTTCAG
1 TGGTTTAGGTTTG-TTTTCTG
69538235 ATTGGTTTAGGTTTGTTTTCTG
1 --TGGTTTAGGTTTGTTTTCTG
69538257 TGGTTT
1 TGGTTT
69538263 TTGTTTTTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
16 4 0.11
17 6 0.17
19 5 0.14
20 11 0.31
22 6 0.17
23 4 0.11
ACGTcount: A:0.06, C:0.05, G:0.28, T:0.62
Consensus pattern (20 bp):
TGGTTTAGGTTTGTTTTCTG
Found at i:69538228 original size:16 final size:16
Alignment explanation
Indices: 69538207--69538269 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 16
69538197 TTGGTTTAGG
69538207 TTTGTTTTCTGTGGTT
1 TTTGTTTTCTGTGGTT
*
69538223 TTTGTTTTTCAGATTGGTTT
1 TTTG-TTTTCTG--TGG-TT
69538243 AGGTTTGTTTTCTGTGGTT
1 ---TTTGTTTTCTGTGGTT
69538262 TTTGTTTT
1 TTTGTTTT
69538270 TCTTCTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
16 12 0.32
17 6 0.16
19 5 0.13
20 5 0.13
22 6 0.16
23 4 0.11
ACGTcount: A:0.05, C:0.05, G:0.24, T:0.67
Consensus pattern (16 bp):
TTTGTTTTCTGTGGTT
Found at i:69538238 original size:39 final size:39
Alignment explanation
Indices: 69538194--69538271 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
69538184 TGCCTGTGTT
69538194 AGATTGGTTTAGGTTTGTTTTCTGTGGTTTTTGTTTTTC
1 AGATTGGTTTAGGTTTGTTTTCTGTGGTTTTTGTTTTTC
69538233 AGATTGGTTTAGGTTTGTTTTCTGTGGTTTTTGTTTTTC
1 AGATTGGTTTAGGTTTGTTTTCTGTGGTTTTTGTTTTTC
69538272 TTCTTTTTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.08, C:0.05, G:0.26, T:0.62
Consensus pattern (39 bp):
AGATTGGTTTAGGTTTGTTTTCTGTGGTTTTTGTTTTTC
Found at i:69538272 original size:17 final size:17
Alignment explanation
Indices: 69538207--69538272 Score: 55
Period size: 17 Copynumber: 3.6 Consensus size: 17
69538197 TTGGTTTAGG
69538207 TTTG-TTTTCTGTGGTT
1 TTTGTTTTTCTGTGGTT
*
69538223 TTTGTTTTTCAGATTGGTT
1 TTTGTTTTTCTG--TGGTT
69538242 TAGGTT-TGTTTTCTGTGGTT
1 T---TTGT-TTTTCTGTGGTT
69538262 TTTGTTTTTCT
1 TTTGTTTTTCT
69538273 TCTTTTTTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 15
0.70 0.04 0.26
Matches are distributed among these distances:
16 4 0.10
17 14 0.35
18 1 0.03
19 6 0.15
20 6 0.15
21 1 0.03
22 8 0.20
ACGTcount: A:0.05, C:0.06, G:0.23, T:0.67
Consensus pattern (17 bp):
TTTGTTTTTCTGTGGTT
Found at i:69538275 original size:20 final size:20
Alignment explanation
Indices: 69538213--69538275 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
69538203 TAGGTTTGTT
69538213 TTCTGTGGTTTTTGTTTTTC
1 TTCTGTGGTTTTTGTTTTTC
*** **
69538233 AGAT-TGGTTTAGGTTTGTT-
1 TTCTGTGGTTTTTGTTT-TTC
69538252 TTCTGTGGTTTTTGTTTTTC
1 TTCTGTGGTTTTTGTTTTTC
69538272 TTCT
1 TTCT
69538276 TTTTTATATC
Statistics
Matches: 30, Mismatches: 10, Indels: 6
0.65 0.22 0.13
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.05, C:0.08, G:0.22, T:0.65
Consensus pattern (20 bp):
TTCTGTGGTTTTTGTTTTTC
Done.