Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 212 of 352
Found at i:69790928 original size:42 final size:42
Alignment explanation
Indices: 69790816--69790931 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 42
69790806 TATCGTACCA
* * * * *
69790816 ATGCCTTATCCCAAATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCG
* * *
69790858 ATGCCAATAGCCTAGCTATGGTCTTACACG-AAGTATCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TATCATATCG
69790901 ATGCCATATCCCAGATATGGTCTTACACGTA
1 ATGCCATATCCCAGATATGGTCTTACACGTA
69790932 TTATAATCTC
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
42 28 0.47
43 32 0.53
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCG
Found at i:69794161 original size:12 final size:12
Alignment explanation
Indices: 69794144--69794176 Score: 59
Period size: 11 Copynumber: 2.8 Consensus size: 12
69794134 ATACAAGTTT
69794144 AAAAAAAATTCG
1 AAAAAAAATTCG
69794156 -AAAAAAATTCG
1 AAAAAAAATTCG
69794167 AAAAAAAATT
1 AAAAAAAATT
69794177 TGAAGTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.70, C:0.06, G:0.06, T:0.18
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:69796295 original size:20 final size:18
Alignment explanation
Indices: 69796270--69796352 Score: 67
Period size: 20 Copynumber: 4.2 Consensus size: 18
69796260 ATATTGTAAA
69796270 AAAAAGAAGAAAAAAATAAG
1 AAAAAGAA-AAAAAAA-AAG
*
69796290 AAAAAGAAAAAAAAGAGAG
1 AAAAAGAAAAAAAA-AAAG
* *
69796309 TGAAAAGAAAAACAACAAAG
1 -AAAAAGAAAAA-AAAAAAG
*
69796329 AAAAAGAAGAAAAAGAAAAT
1 AAAAAGAA-AAAAA-AAAAG
69796349 AAAA
1 AAAA
69796353 TTGAGAAAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
19 17 0.33
20 32 0.63
21 2 0.04
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.04
Consensus pattern (18 bp):
AAAAAGAAAAAAAAAAAG
Found at i:69799456 original size:14 final size:14
Alignment explanation
Indices: 69799398--69799456 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
69799388 ACCTAAACCG
*
69799398 ACCAATTCGTTCAT
1 ACCATTTCGTTCAT
*
69799412 ATCC-CTTCGTTCAT
1 A-CCATTTCGTTCAT
* *
69799426 ACCATTTCATTCCT
1 ACCATTTCGTTCAT
*
69799440 ACCATTTCGTTCGT
1 ACCATTTCGTTCAT
69799454 ACC
1 ACC
69799457 CCTCTTTATT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
13 2 0.05
14 33 0.89
15 2 0.05
ACGTcount: A:0.20, C:0.34, G:0.07, T:0.39
Consensus pattern (14 bp):
ACCATTTCGTTCAT
Found at i:69804828 original size:56 final size:56
Alignment explanation
Indices: 69804768--69804901 Score: 241
Period size: 56 Copynumber: 2.4 Consensus size: 56
69804758 TCCCAGACAG
* **
69804768 GGTCTTACTCGTACACATATATCGAAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAACAT
69804824 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAACAT
69804880 GGTCTTACTCGCACACATATAT
1 GGTCTTACTCGCACACATATAT
69804902 TGAAGCCATG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAACAT
Found at i:69805749 original size:21 final size:21
Alignment explanation
Indices: 69805725--69805768 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
69805715 GTTTTTATTC
69805725 TTTGTTTTCTTTCTTTAATAT
1 TTTGTTTTCTTTCTTTAATAT
69805746 TTTGTTTTCTTTCTTTAATAT
1 TTTGTTTTCTTTCTTTAATAT
69805767 TT
1 TT
69805769 GGCTATCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.09, G:0.05, T:0.73
Consensus pattern (21 bp):
TTTGTTTTCTTTCTTTAATAT
Found at i:69807826 original size:33 final size:33
Alignment explanation
Indices: 69807784--69807849 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
69807774 AATATTCAAA
* *
69807784 ATAGTCTAGG-CTTTAGCCCTATACAGTATCAGT
1 ATAGTCTAGGAC-CTAGCCCTATACAGTAACAGT
69807817 ATAGTCTAGGACCTAGCCCTATACAGTAACAGT
1 ATAGTCTAGGACCTAGCCCTATACAGTAACAGT
69807850 GTGGGCCTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (33 bp):
ATAGTCTAGGACCTAGCCCTATACAGTAACAGT
Found at i:69808097 original size:27 final size:27
Alignment explanation
Indices: 69808031--69808112 Score: 89
Period size: 27 Copynumber: 3.0 Consensus size: 27
69808021 TAAGTGTGAG
*
69808031 AATAGTAAGTGTGGCAAAGCCACCAGT
1 AATAGTAAGTGTGGCATAGCCACCAGT
*
69808058 -ATCAGTAATTGTGGCATAGCCACCAGT
1 AAT-AGTAAGTGTGGCATAGCCACCAGT
*
69808085 AATAGTGAA-TGTGACATA-CTCACCAGT
1 AATAGT-AAGTGTGGCATAGC-CACCAGT
69808112 A
1 A
69808113 CAGTACTTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
26 3 0.06
27 41 0.85
28 4 0.08
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (27 bp):
AATAGTAAGTGTGGCATAGCCACCAGT
Found at i:69808284 original size:27 final size:27
Alignment explanation
Indices: 69808253--69808560 Score: 323
Period size: 27 Copynumber: 11.4 Consensus size: 27
69808243 TGGCCTAATC
* * * *
69808253 GTCATTTTACCATATAAGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* *
69808280 ATCATTTTACCTTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
69808307 GTCATTTTACCCTAC-GTGGACATTACT
1 GTCATTTTACCCTACAG-GGGCATTACG
* *
69808334 GTTATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
69808361 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
69808388 GTCATTTTATCCTGCAAGGGCATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
69808415 GTCATTTTACCCTATAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* *
69808442 GTAATTTTACCCTATC-GGGGCATTATG
1 GTCATTTTACCCTA-CAGGGGCATTACG
*
69808469 ATCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
** ** *
69808496 GTTGTTTTACTGTACAGGGGCATTACT
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
69808523 GTCATTTTACCCAACATGGGTATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
69808550 GTCATTTTACC
1 GTCATTTTACC
69808561 TATTTTGGGG
Statistics
Matches: 229, Mismatches: 48, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.01
27 226 0.99
28 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:69810398 original size:47 final size:45
Alignment explanation
Indices: 69810338--69810505 Score: 187
Period size: 47 Copynumber: 3.6 Consensus size: 45
69810328 GAAGAAGGTT
69810338 AGTGTAAGACATGTCTGGGACATGCATCAGCCGCATCATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCGCAT-ATGATAGCC
* * * *
69810384 CGTGTAAGACCATGTCTGGGACATGGCAT-TGGCGTATAGGTGAGT-GCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCGCATA--TGA-TAGCC
* *
69810432 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCGC-AT-ATGATAGCC
*
69810479 AGTGTAAGACGTGTCTGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
69810506 TGGCTAAGTT
Statistics
Matches: 102, Mismatches: 11, Indels: 17
0.78 0.08 0.13
Matches are distributed among these distances:
46 14 0.14
47 66 0.65
48 20 0.20
49 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCGCATATGATAGCC
Found at i:69810436 original size:94 final size:92
Alignment explanation
Indices: 69810338--69810599 Score: 312
Period size: 94 Copynumber: 2.8 Consensus size: 92
69810328 GAAGAAGGTT
*
69810338 AGTGTAAGACATGTCTGGGACATGCATCAGCCGCATCATGATAGCCCGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCGCATCATGATAGCCAGTGTAAGACCATGTCTGG
69810403 GACATGGCATTGGCGTATAGGTGAGTGCC
66 GACATGGCATTGGC-TA-AGGTGAGTGCC
* * * *
69810432 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGTTAGCCAGTGTAAGA-CGTGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCGC-ATCATGATAGCCAGTGTAAGACCATGTCTG
* ** *
69810496 GGACAT-GCATTGGCTAAGTTTCGTGCT
65 GGACATGGCATTGGCTAAGGTGAGTGCC
* * * * * * * *
69810523 AGTGTAAGACATGTCTGGGACATGTATTAGCATGTATACACGAGAGCTAGTGTAAAACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-CGCAT-CATGATAGCCAGTGTAAGACCATGTCT
69810588 GGGACATGGCAT
64 GGGACATGGCAT
69810600 CGACCTCGAT
Statistics
Matches: 142, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
91 38 0.27
92 15 0.11
93 21 0.15
94 50 0.35
95 18 0.13
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCGCATCATGATAGCCAGTGTAAGACCATGTCTGG
GACATGGCATTGGCTAAGGTGAGTGCC
Found at i:69810539 original size:44 final size:43
Alignment explanation
Indices: 69810385--69810546 Score: 146
Period size: 47 Copynumber: 3.5 Consensus size: 43
69810375 ATGATAGCCC
**
69810385 GTGTAAGACCATGTCTGGGACATGGCATTGGCGTATAGGTGAGTGCCA
1 GTGTAAGA-CATGTCTGGGACAT-GCATTGGC-TA-A-GTTTGTGCCA
* * * *
69810433 GTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGTT-AGCCA
1 GTGTAAGACATGTCTGGGACATGCAT-TGGCT--AAG-T-TTGTGCCA
* *
69810480 GTGTAAGACGTGTCTGGGACATGCATTGGCTAAGTTTCGTGCTA
1 GTGTAAGACATGTCTGGGACATGCATTGGCTAAGTTT-GTGCCA
69810524 GTGTAAGACATGTCTGGGACATG
1 GTGTAAGACATGTCTGGGACATG
69810547 TATTAGCATG
Statistics
Matches: 94, Mismatches: 13, Indels: 18
0.75 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 27 0.29
46 9 0.10
47 46 0.49
48 9 0.10
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.27
Consensus pattern (43 bp):
GTGTAAGACATGTCTGGGACATGCATTGGCTAAGTTTGTGCCA
Found at i:69822170 original size:40 final size:40
Alignment explanation
Indices: 69822126--69822310 Score: 273
Period size: 40 Copynumber: 4.7 Consensus size: 40
69822116 GCCACTAGCT
* * *
69822126 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
69822166 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* *
69822205 CAAATGCCTTCGAGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * * *
69822245 CAAACGCCTTCGGGACTTAGCCTGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
69822285 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69822311 ATTAGCCACT
Statistics
Matches: 133, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 36 0.27
40 97 0.73
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:69822224 original size:79 final size:80
Alignment explanation
Indices: 69822126--69822310 Score: 273
Period size: 79 Copynumber: 2.3 Consensus size: 80
69822116 GCCACTAGCT
* * * *
69822126 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
69822191 -TATAATAACTCGCA
66 ATATAATAACTCGCA
* * *
69822205 CAAATGCCTTCGAGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCTGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
69822270 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
69822285 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69822311 ATTAGCCACT
Statistics
Matches: 94, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 58 0.62
80 36 0.38
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:69822331 original size:40 final size:39
Alignment explanation
Indices: 69822103--69822344 Score: 242
Period size: 40 Copynumber: 6.1 Consensus size: 39
69822093 CCTTCGGAGT
* * *
69822103 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-AACTCGCACAAATGCCTTCGGGAC
* *
69822142 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-AACTCGCACAAATGCCTTCGGGAC
* *
69822182 TTAGCCCGG-TATAATAACTCGCACAAATGCCTTCGAGAC
1 TTAGCCCGGATAT-AGAACTCGCACAAATGCCTTCGGGAC
*
69822221 TTAGCCCGGATATA-ATAGCTCGCACAAACGCCTTCGGGAC
1 TTAGCCCGGATATAGA-A-CTCGCACAAATGCCTTCGGGAC
* * *
69822261 TTAGCCTGGATATAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-AACTCGCACAAATGCCTTCGGGAC
* * *
69822301 TTAGCCCGGA-ATTAGCCACTAGCTCAAATGCTCTT-GGGAC
1 TTAGCCCGGATA-TAG-AACTCGCACAAATGC-CTTCGGGAC
69822341 TTAG
1 TTAG
69822345 TCTGGTTATC
Statistics
Matches: 173, Mismatches: 21, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 41 0.24
40 127 0.73
41 3 0.02
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATAGAACTCGCACAAATGCCTTCGGGAC
Found at i:69826107 original size:27 final size:27
Alignment explanation
Indices: 69826059--69826120 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
69826049 ACAGTAAGTA
* * ** *
69826059 TGGCAAAGCCACCAGTTTCAGTGATTG
1 TGGCATAGCCACCAATAACAGTGAATG
69826086 TGGCATAGCCACCAATAACAGTGAATG
1 TGGCATAGCCACCAATAACAGTGAATG
*
69826113 TGACATAG
1 TGGCATAG
69826121 TCACTAGTGC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (27 bp):
TGGCATAGCCACCAATAACAGTGAATG
Found at i:69826311 original size:27 final size:27
Alignment explanation
Indices: 69826269--69826574 Score: 265
Period size: 27 Copynumber: 11.4 Consensus size: 27
69826259 AGGCATAATC
* *
69826269 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
69826296 GTCATCTTACCCTACAGGGGCGTTATG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * ** *
69826323 GTCATTTTATCTTACATGAACATTACT
1 GTCATTTTACCCTACAGGGGCATTACG
** * *
69826350 GTCATTTTACCCTGTA-GGGTATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * **
69826376 ATTATTTTACCCTACAAGGGCATTATA
1 GTCATTTTACCCTACAGGGGCATTACG
69826403 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *** *
69826430 GTCATTTTACCTTACAAATGCAGTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
69826457 ATCATTTTACCCTACCGGAGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
*
69826484 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
69826511 GTCATTTTATCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
69826538 TTTATTTTACCCTATAGGGG-TTTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
69826564 ATCATTTTACC
1 GTCATTTTACC
69826575 TATTTTGGGG
Statistics
Matches: 219, Mismatches: 59, Indels: 3
0.78 0.21 0.01
Matches are distributed among these distances:
26 31 0.14
27 188 0.86
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:69826502 original size:134 final size:134
Alignment explanation
Indices: 69826260--69826575 Score: 323
Period size: 134 Copynumber: 2.4 Consensus size: 134
69826250 CGAAAAAAAA
* * * * ** * *
69826260 GGCATAATCGTCATTTTACCATACAGGGGTATTACGGTCATCTTACCCTACAGGGGCGTTATGGT
1 GGCATTATCGTCATTTTACCCTACAGGGG-ATTACGGTCATTTTACCTTACAAAGGCGTTACGAT
* * * * * * * *
69826325 CATTTTATCTTACATGAACATTACTGTCATTTTACCCTGTA-GGGTATTATGATTATTTTACCCT
65 CATTTTACCCTACAGGAACATTACAGTCATTTTACCCTATAGGGGCATTACGATCATTTTACCCT
69826389 ACAAG
130 ACAAG
* *
69826394 GGCATTATAGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACCTTACAAATGCAG-TACGA
1 GGCATTATCGTCATTTTACCCTACAGGGG-ATTACGGTCATTTTACCTTACAAAGGC-GTTACGA
* * * *
69826458 TCATTTTACCCTACCGGAGCATTACAGTCATTTTACCCTATAGGGGCATTACGGTCATTTTATCC
64 TCATTTTACCCTACAGGAACATTACAGTCATTTTACCCTATAGGGGCATTACGATCATTTTACCC
* *
69826523 TATAGG
129 TACAAG
* * * *
69826529 GGCATTA-CGTTTATTTTACCCTATAGGGGTTTACGATCATTTTACCT
1 GGCATTATCG-TCATTTTACCCTACAGGGGATTACGGTCATTTTACCT
69826576 ATTTTGGGGT
Statistics
Matches: 149, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
134 103 0.69
135 46 0.31
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (134 bp):
GGCATTATCGTCATTTTACCCTACAGGGGATTACGGTCATTTTACCTTACAAAGGCGTTACGATC
ATTTTACCCTACAGGAACATTACAGTCATTTTACCCTATAGGGGCATTACGATCATTTTACCCTA
CAAG
Found at i:69841418 original size:33 final size:34
Alignment explanation
Indices: 69841363--69841431 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 34
69841353 ATAGGGACAA
* *
69841363 TATCAGTTAGGGCCTTATCCCTTCACAGTAAT-AG
1 TATCAGTTAGGGCCTAAGCCCTTCACAG-AATCAG
* *
69841397 TATCAG-TGGGGCCTAAGCCCTTGACAGAATCAG
1 TATCAGTTAGGGCCTAAGCCCTTCACAGAATCAG
69841430 TA
1 TA
69841432 CAATATGCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
32 3 0.10
33 21 0.70
34 6 0.20
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (34 bp):
TATCAGTTAGGGCCTAAGCCCTTCACAGAATCAG
Found at i:69842393 original size:25 final size:25
Alignment explanation
Indices: 69842351--69842421 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
69842341 CCCTCTCTCA
* *
69842351 AGCCATATAATAGAAAGCTCATGTG
1 AGCCATATAATAGGAAGCTCATCTG
* * *
69842376 AGCCATGTAACAGGAAGCTTATCTG
1 AGCCATATAATAGGAAGCTCATCTG
69842401 -GCCTATATAATAGGAAGCTCA
1 AGCC-ATATAATAGGAAGCTCA
69842422 CACAGTTCTA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
24 3 0.08
25 34 0.92
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (25 bp):
AGCCATATAATAGGAAGCTCATCTG
Found at i:69844993 original size:80 final size:81
Alignment explanation
Indices: 69844874--69845057 Score: 257
Period size: 80 Copynumber: 2.3 Consensus size: 81
69844864 GCTACTCGTT
* * *
69844874 CAAATGCCTTCGGGACATAGCCCGGTTATAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
* *
69844939 TTATAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
* *
69844954 CAAATGCCTTCGGGACTTAACCCGAATT-TAGTAACTCGCACCAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCG-ATTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
* *
69845018 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
69845035 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
69845058 GACATCATTC
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 82 0.89
81 10 0.11
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
ATATAGTAACTTAGCA
Found at i:69845059 original size:40 final size:40
Alignment explanation
Indices: 69844855--69845059 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
69844845 CGAAATTTAA
** *
69844855 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69844895 CCGGTTATAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
69844935 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
69844975 CCGAATTTAGTAACTCGCACCAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
69845015 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
69845055 CCGGA
1 CCGGA
69845060 CATCATTCGA
Statistics
Matches: 137, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
39 7 0.05
40 117 0.85
41 13 0.09
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69853187 original size:78 final size:81
Alignment explanation
Indices: 69853065--69853246 Score: 268
Period size: 78 Copynumber: 2.3 Consensus size: 81
69853055 GCTACTCGTT
*
69853065 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTACTCGCACAAATGCCTTCGGATCTTAGTCCGG
* *
69853128 TTATAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
*
69853143 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTACTCGCAC-AATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTACTCGCACAAATGCCTTCGGATCTTAGTCCGG
* *
69853206 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
69853222 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69853247 CATCATTCGA
Statistics
Matches: 94, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
78 61 0.65
79 31 0.33
80 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTACTCGCACAAATGCCTTCGGATCTTAGTCCGG
ATATAGTAACTTAGCA
Found at i:69853246 original size:40 final size:38
Alignment explanation
Indices: 69853046--69853246 Score: 217
Period size: 40 Copynumber: 5.1 Consensus size: 38
69853036 CGGAATTTAA
** *
69853046 CCGGATATAGCTACTCGTTCAAATGCCTTCGGACATAGC
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGACTTAGC
* *
69853085 CCGGTTATAGTACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTACTCGCACAAATGCCTTCGGA-CTTAGC
* *
69853124 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGT-ACTCGCACAAATGCCTTC-GGACTTAGC
* *
69853164 CCGGATTTAGTACTCGCAC-AATGCCTTCGGATCTTAGT
1 CCGGATATAGTACTCGCACAAATGCCTTCGGA-CTTAGC
* *
69853202 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-AC-TCGCACAAATGCCTTC-GGACTTAGC
69853242 CCGGA
1 CCGGA
69853247 CATCATTCGA
Statistics
Matches: 139, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
37 3 0.02
38 42 0.30
39 34 0.24
40 52 0.37
41 8 0.06
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (38 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGACTTAGC
Found at i:69853837 original size:21 final size:22
Alignment explanation
Indices: 69853813--69853860 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
69853803 CACATAAATG
*
69853813 GCATACATTTTACTAACT-AAT-
1 GCATACATATTA-TAACTCAATA
69853834 GCATTACATATTATAACTCAATA
1 GCA-TACATATTATAACTCAATA
69853857 GCAT
1 GCAT
69853861 CCATCATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
21 8 0.35
22 12 0.52
23 3 0.13
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.35
Consensus pattern (22 bp):
GCATACATATTATAACTCAATA
Found at i:69863695 original size:40 final size:39
Alignment explanation
Indices: 69863641--69863774 Score: 108
Period size: 39 Copynumber: 3.4 Consensus size: 39
69863631 CAAATTCAAT
* * * *
69863641 TACCAACACAAAGCCTACGGGACTTTAAGCT-CAGATATAG
1 TACCAGCACGAAGCCTAC-GGACCTTAA-CTCCAAATATAG
** *
69863681 TACCAGTGCGAAGCCTGCGGACCTTAACTCCAAATATAG
1 TACCAGCACGAAGCCTACGGACCTTAACTCCAAATATAG
* * * * * *
69863720 TACCAGCACGAAGCCTATGGATCTTAAGTCCGAATACAA
1 TACCAGCACGAAGCCTACGGACCTTAACTCCAAATATAG
* *
69863759 TTCCAGTACGAAGCCT
1 TACCAGCACGAAGCCT
69863775 GCGGGTCTTT
Statistics
Matches: 75, Mismatches: 18, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
38 2 0.03
39 60 0.80
40 13 0.17
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.21
Consensus pattern (39 bp):
TACCAGCACGAAGCCTACGGACCTTAACTCCAAATATAG
Found at i:69863724 original size:39 final size:39
Alignment explanation
Indices: 69863675--69863778 Score: 118
Period size: 39 Copynumber: 2.7 Consensus size: 39
69863665 TTAAGCTCAG
*
69863675 ATATAGTACCAGTGCGAAGCCTGCGGACCTTAACTCCAA
1 ATATAGTACCAGTACGAAGCCTGCGGACCTTAACTCCAA
* ** * * *
69863714 ATATAGTACCAGCACGAAGCCTATGGATCTTAAGTCCGA
1 ATATAGTACCAGTACGAAGCCTGCGGACCTTAACTCCAA
* * *
69863753 ATACAATTCCAGTACGAAGCCTGCGG
1 ATATAGTACCAGTACGAAGCCTGCGG
69863779 GTCTTTAAGC
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (39 bp):
ATATAGTACCAGTACGAAGCCTGCGGACCTTAACTCCAA
Found at i:69863877 original size:39 final size:39
Alignment explanation
Indices: 69863689--69864346 Score: 753
Period size: 39 Copynumber: 16.7 Consensus size: 39
69863679 AGTACCAGTG
* ** * * *
69863689 CGAAGCCTGCGGACCTTAACTCCAAATATAGTACCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
** * * *
69863728 CGAAGCCTATGGATCTTAAGTCCGAATACAATTCCAGTA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
* * * *
69863767 CGAAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCA
1 CGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCA
* * * *
69863807 CGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA
1 CGAAGCCTG-CGGACCTTAAGTCCGGATACAATTCCAGCA
* *
69863847 CGAAGCCTGCGGACCTTAAGTCTGGATACAATTCCGGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
*** * * * *
69863886 TTTAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA
1 CGAAGCCTG-CGGACCTTAAGTCCGGATACAATTCCAGCA
*
69863926 CGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
* * *
69863965 TGAAGCTTGCGGACCTTAAGTCTGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
* * * * *
69864004 CGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCTAGCA
1 CGAAGCCTG-CGGACCTTAAGTCCGGATACAATTCCAGCA
69864044 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
69864083 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
* * * *
69864122 CAAAGCCTGCAGGTCTTTAAGCCCGGATA-AGATTCCAGCA
1 CGAAGCCTGC-GGACCTTAAGTCCGGATACA-ATTCCAGCA
* * * * *
69864162 -TATAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCA
1 CGA-AGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCA
*
69864202 CGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
* *
69864241 CAAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
*
69864280 CGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
* * *
69864319 TGAAGCCTGTGGACCTCAAGTCCGGATA
1 CGAAGCCTGCGGACCTTAAGTCCGGATA
69864347 TACATCAAAT
Statistics
Matches: 533, Mismatches: 77, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
39 338 0.63
40 193 0.36
41 2 0.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (39 bp):
CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
Found at i:69863994 original size:118 final size:118
Alignment explanation
Indices: 69863689--69864346 Score: 831
Period size: 118 Copynumber: 5.6 Consensus size: 118
69863679 AGTACCAGTG
* * ** * * * ** * *
69863689 CGAAGCCTGCGGACCTTAACTCCAAATATAGTACCAGCACGAAGCCTATGGATCTTAAGTCCGAA
1 CGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
* * * *
69863754 TACAATTCCAGTACGAAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCA
66 TACAATTCCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA
* * * *
69863807 CGAAGCCTGTG-GGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCTG
1 CGAAG-CT-TGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCG
* ***
69863871 GATACAATTCCGGCATTTAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA
64 GATACAATTCCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA
* * *
69863926 CGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCATGAAGCTTGCGGACCTTAAGTCTGGA
1 CGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
* *
69863991 TACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCTAGCA
66 TACAATTCCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA
*
69864044 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
1 CGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
**
69864109 TACAATTCCAGCACAAAGCCTGCAGGTCTTTAAGCCCGGATA-AGATTCCAGCA
66 TACAATTCCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACA-ATTCCAGCA
* * * * * * *
69864162 -TATAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCG
1 CGA-AGCTTGC-GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCG
* * *
69864226 GATACAATTCCAGCACAAAG-CT-TGCGGACCTTAAGTCCGGATACAATTCCAGCA
64 GATACAATTCCAGCACAAAGCCTGTG-GGTCTTTAAGCCCGGATACAATTCCAGCA
* * *
69864280 CGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCATGAAGCCTGTGGACCTCAAGTCCGGA
1 CGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
69864345 TA
66 TA
69864347 TACATCAAAT
Statistics
Matches: 470, Mismatches: 61, Indels: 19
0.85 0.11 0.03
Matches are distributed among these distances:
117 53 0.11
118 252 0.54
119 163 0.35
120 2 0.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (118 bp):
CGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
TACAATTCCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA
Found at i:69864058 original size:197 final size:198
Alignment explanation
Indices: 69863722--69864346 Score: 834
Period size: 197 Copynumber: 3.2 Consensus size: 198
69863712 AAATATAGTA
** * * * *
69863722 CCAGCACGAAGCCTATGGATCTTAAGTCCGAATACAATTCCAGTACGAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTTTAA
69863787 GCCCAGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAG
66 GCCCAGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAG
* * *** * * *
69863852 CCTGCGGACCTTAAGTCTGGATACAATTCCGGCATTTAGCCTGTGGGTCTTTAAGCCCGGATACA
131 CCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTGGGACCTTAAGTCCGGATACA
69863917 ATT
196 ATT
* * * *
69863920 CCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCATGAAGCTTGC-GGACCTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTTTAA
* ** *
69863984 GTCTGGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCTAGCACGAAG
66 GCCCAGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAG
*
69864049 CCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTG-CGGACCTTAAGTCCGGATACA
131 CCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTGGGACCTTAAGTCCGGATACA
69864113 ATT
196 ATT
* * * *
69864116 CCAGCACAAAGCCTGCAGGTCTTTAAGCCCGGATA-AGATTCCAGCAT-ATAGCCTGCGGGTCTT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACA-ATTCCAGCATGA-AGCCTGCGGGTCTT
* * *
69864179 TAAGCCCAGATACAATTCCAGCACGAAG-CT-TGCGGACCTTAAGTCCGGATACAATTCCAGCAC
63 TAAGCCCAGATACAATTCCAGCACGAAGCCTGTG-GGTCTTTAAGCCCGGATACAATTCCAGCAC
* *
69864242 AAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAG-CT-TGCGGACCTTAAGTCCGG
127 GAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTG-GGACCTTAAGTCCGG
69864305 ATACAATT
191 ATACAATT
* * *
69864313 CCAGCATGAAGCCTGTGGACCTCAAGTCCGGATA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
69864347 TACATCAAAT
Statistics
Matches: 372, Mismatches: 48, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
196 54 0.15
197 242 0.65
198 76 0.20
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (198 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTTTAA
GCCCAGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAG
CCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTGGGACCTTAAGTCCGGATACA
ATT
Found at i:69878316 original size:38 final size:38
Alignment explanation
Indices: 69878251--69878374 Score: 142
Period size: 38 Copynumber: 3.2 Consensus size: 38
69878241 ATTTGATGTG
* * * **
69878251 TATTCGGGCTTAAAGACCCACAGGCTTCGTGTTGGTAAAA
1 TATTCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTA
69878291 TATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * *
69878329 TA-TCTGGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATTC-GGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
69878367 TATTCGGG
1 TATTCGGG
69878375 CCTTCGTGCC
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
37 2 0.03
38 57 0.77
39 7 0.09
40 8 0.11
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (38 bp):
TATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
Found at i:69880991 original size:48 final size:48
Alignment explanation
Indices: 69880924--69881298 Score: 332
Period size: 48 Copynumber: 7.8 Consensus size: 48
69880914 ATATTAGGGT
* * *
69880924 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTAGGATTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTAGGCTTGA
* * * * ** **
69880972 TATGAGAGCTAATGTAAGACCATGTCTGGGACATGGCATCAACCTCAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTAGGCTTGA
* * * * *
69881020 TATGTGAGCCAATGTAAGACCATGTTCT-GAACATGGCA-TCGACATTGA
1 TATGAGAGCTAGTGTAAGACCATGTT-TGGAACATGGCATTAGGC-TTGA
* * * * *
69881068 TATGAGAGCTAGTATAAGACCATGTCTGGGACATGGCA-TCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTAGG-CTTGA
*
69881116 TATGTA-AGCTAGTGTAAGACCATGTTTGGAACATGGCA-TCGGCATTGA
1 TATG-AGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTAGGC-TTGA
* * ** *
69881164 TATGAGAGTTAGTGTAAGACCATGTCTGGGGCATGGCATT-GGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTAGG-CTTGA
* * * * * *
69881212 TATGTGAGCCAGTGTAAGCCCTTGTTTGGAACATGGCATCGATGCTT-A
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCAT-TAGGCTTGA
*
69881260 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCAT
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCAT
69881299 CGGCATCTTA
Statistics
Matches: 262, Mismatches: 54, Indels: 22
0.78 0.16 0.07
Matches are distributed among these distances:
47 4 0.02
48 250 0.95
49 7 0.03
50 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTAGGCTTGA
Found at i:69881088 original size:96 final size:97
Alignment explanation
Indices: 69880924--69881302 Score: 536
Period size: 96 Copynumber: 3.9 Consensus size: 97
69880914 ATATTAGGGT
* * *
69880924 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT-TAGGATTGATATGAGAGCTAATGTA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGAGCATTGATATGAGAGCTAGTGTA
** *
69880988 AGACCATGTCTGGGACATGGCATCAACCTCAA
66 AGACCATGTCTGGGACATGGCATCGGCCTCGA
* *
69881020 TATGTGAGCCAATGTAAGACCATGTTCT-GAACATGGCATCGA-CATTGATATGAGAGCTAGTAT
1 TATGTGAGCCAGTGTAAGACCATGTT-TGGAACATGGCATCGAGCATTGATATGAGAGCTAGTGT
69881083 AAGACCATGTCTGGGACATGGCATCGGCCTCGA
65 AAGACCATGTCTGGGACATGGCATCGGCCTCGA
* * *
69881116 TATGTAAGCTAGTGTAAGACCATGTTTGGAACATGGCATCG-GCATTGATATGAGAGTTAGTGTA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGAGCATTGATATGAGAGCTAGTGTA
* *
69881180 AGACCATGTCTGGGGCATGGCATTGGCCTCGA
66 AGACCATGTCTGGGACATGGCATCGGCCTCGA
* *
69881212 TATGTGAGCCAGTGTAAGCCCTTGTTTGGAACATGGCATCGATGC-TT-ATATGAGAGCTAGTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGA-GCATTGATATGAGAGCTAGTGT
* * *
69881275 AAGACCATGTTTAGAACATGGCATCGGC
65 AAGACCATGTCTGGGACATGGCATCGGC
69881303 ATCTTACCCT
Statistics
Matches: 252, Mismatches: 25, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
95 1 0.00
96 245 0.97
97 4 0.02
98 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (97 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGAGCATTGATATGAGAGCTAGTGTA
AGACCATGTCTGGGACATGGCATCGGCCTCGA
Found at i:69881199 original size:144 final size:142
Alignment explanation
Indices: 69880924--69881305 Score: 417
Period size: 144 Copynumber: 2.6 Consensus size: 142
69880914 ATATTAGGGT
* * *
69880924 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTAGGATTGATATGAGAGCTAATGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCA-TCGG-CTGATATGAGAGCTAGTGTAA
* * ** * *
69880989 GACCATGTCTGGGACATGGCATCAACCTCAATATGTGAGCCAATGTAAGACCATGTTCTGAACAT
64 GACCATGTTTGGAACATGGCATCGGCATCAATATGAGAGCCAATGTAAGACCATGTTCTGAACAT
*
69881054 GGCATCGACATTGA
129 GGCATCGACATCGA
* * * * *
69881068 TATGAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTA-AGCTAGTGTA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGG-CT-GATATG-AGAGCTAGTGTA
** ** * **
69881132 AGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGTTAGTGTAAGACCATG-TCTGGGGC
63 AGACCATGTTTGGAACATGGCATCGGCATCAATATGAGAGCCAATGTAAGACCATGTTCT-GAAC
* * *
69881196 ATGGCATTGGCCTCGA
127 ATGGCATCGACATCGA
* * *
69881212 TATGTGAGCCAGTGTAAGCCCTTGTTTGGAACATGGCATCGATGCTTATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG--GCTGATATGAGAGCTAGTGTAA
*
69881277 GACCATGTTTAGAACATGGCATCGGCATC
64 GACCATGTTTGGAACATGGCATCGGCATC
69881306 TTACCCTTTT
Statistics
Matches: 196, Mismatches: 36, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
143 8 0.04
144 184 0.94
145 3 0.02
146 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (142 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCTGATATGAGAGCTAGTGTAAGA
CCATGTTTGGAACATGGCATCGGCATCAATATGAGAGCCAATGTAAGACCATGTTCTGAACATGG
CATCGACATCGA
Found at i:69884326 original size:21 final size:20
Alignment explanation
Indices: 69884300--69884338 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
69884290 GTTAAGAGGA
69884300 CACACGGGCGTGTCGCCCTCC
1 CACACGGGCGTGT-GCCCTCC
*
69884321 CACACGGGTGTGTGCCCT
1 CACACGGGCGTGTGCCCT
69884339 TGTTTGCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.41, G:0.31, T:0.18
Consensus pattern (20 bp):
CACACGGGCGTGTGCCCTCC
Found at i:69889528 original size:47 final size:47
Alignment explanation
Indices: 69889471--69889576 Score: 149
Period size: 47 Copynumber: 2.2 Consensus size: 47
69889461 TTACATGGAT
* * * * *
69889471 CACATATCACACTGATGTCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACCGATGCCATATCCCAAATATGGTATTATACAGAAG
*
69889518 CACATATCACACCGATGCCATATCCCAAATATGGTATTATACGGAAG
1 CACATATCACACCGATGCCATATCCCAAATATGGTATTATACAGAAG
69889565 CACATAATCACA
1 CACAT-ATCACA
69889577 TCTCTCCGAT
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
47 46 0.88
48 6 0.12
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.25
Consensus pattern (47 bp):
CACATATCACACCGATGCCATATCCCAAATATGGTATTATACAGAAG
Found at i:69889647 original size:54 final size:53
Alignment explanation
Indices: 69889523--69889684 Score: 184
Period size: 54 Copynumber: 3.0 Consensus size: 53
69889513 AGTAGCACAT
* * * * *
69889523 ATCACACCGATGCCATATCCCAAATATGGTATTATACGG-AAGCACATAATCAC
1 ATCACATCGATGCCATAGCCCAACTATGGTCTTATACGGAAATCACAT-ATCAC
* * *
69889576 ATCTC-TCCGATGCCATAGCCCAACTGTGGTCTTATATGGAAATCACATGATCAC
1 ATCACAT-CGATGCCATAGCCCAACTATGGTCTTATACGGAAATCACAT-ATCAC
* * *
69889630 ATCACATCGATGTCATAGCCCAGCTATGGTCTTATACGAAAATCACATATCAC
1 ATCACATCGATGCCATAGCCCAACTATGGTCTTATACGGAAATCACATATCAC
69889683 AT
1 AT
69889685 GTTGCCATGG
Statistics
Matches: 91, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
53 38 0.42
54 52 0.57
55 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (53 bp):
ATCACATCGATGCCATAGCCCAACTATGGTCTTATACGGAAATCACATATCAC
Found at i:69892001 original size:21 final size:21
Alignment explanation
Indices: 69891975--69892019 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
69891965 GTTTATCATG
69891975 CATCAAACATTCATATTCCTC
1 CATCAAACATTCATATTCCTC
*
69891996 CATCAAACATTCATATTTCTC
1 CATCAAACATTCATATTCCTC
69892017 CAT
1 CAT
69892020 TAATAAACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.36
Consensus pattern (21 bp):
CATCAAACATTCATATTCCTC
Found at i:69894364 original size:27 final size:27
Alignment explanation
Indices: 69894332--69894391 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 27
69894322 CCCAATATTG
69894332 GTAAAATTA-CCGAAATACCCTTGTAGT
1 GTAAAATTAGCCGAAATA-CCTTGTAGT
*
69894359 GTAAAA-TAGCCGTAATACCTTGTAGT
1 GTAAAATTAGCCGAAATACCTTGTAGT
69894385 GTAAAAT
1 GTAAAAT
69894392 GACCATAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 17 0.57
27 13 0.43
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (27 bp):
GTAAAATTAGCCGAAATACCTTGTAGT
Found at i:69894400 original size:26 final size:26
Alignment explanation
Indices: 69894332--69894400 Score: 79
Period size: 26 Copynumber: 2.6 Consensus size: 26
69894322 CCCAATATTG
69894332 GTAAAATTACCGA-AATACCCTTGTAGT
1 GTAAAA-TACC-ATAATACCCTTGTAGT
*
69894359 GTAAAATAGCCGTAATA-CCTTGTAGT
1 GTAAAATA-CCATAATACCCTTGTAGT
69894385 GTAAAATGACCATAAT
1 GTAAAAT-ACCATAAT
69894401 GTCCCTGTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
26 24 0.65
27 13 0.35
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (26 bp):
GTAAAATACCATAATACCCTTGTAGT
Found at i:69894788 original size:127 final size:127
Alignment explanation
Indices: 69894554--69894807 Score: 357
Period size: 127 Copynumber: 2.0 Consensus size: 127
69894544 TAGACGGAGG
* *
69894554 AAGTGTACGGCATGTAGCCATCCTGTATAAGGCTTTCAGCCTTTCTGTGATACTTAGGGCTAATA
1 AAGTGTACGGCATGTAGCCATCCTGTATAAGGCTTTCAGCCTTTCTCTAATACTTAGGGCTAATA
* *
69894619 GTCGTTCTATTAACTGGCAGCGTGGCTGAGATACTTACGGCCTTTAGCCGTCCTGTCTATGA
66 GTCGTTCTATTAACTGGCAGCGTGGCTGAGATACTTACGGCCTTTAGCCGTACAGTCTATGA
* * * * * * *
69894681 AAGTGTATGGCCTGTAGCCGTCCTGTTTAAGGCTTTCAGCCTTTCTCTAATATTTATGGCTTATA
1 AAGTGTACGGCATGTAGCCATCCTGTATAAGGCTTTCAGCCTTTCTCTAATACTTAGGGCTAATA
* * * *
69894746 GTCGTTCTGTTAACTGGCAGCGTTGCT-ACGATATTTATGGCCTTTAGCCGTACAGTCTATGA
66 GTCGTTCTATTAACTGGCAGCGTGGCTGA-GATACTTACGGCCTTTAGCCGTACAGTCTATGA
69894808 CATTGAGTCA
Statistics
Matches: 111, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
126 1 0.01
127 110 0.99
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.35
Consensus pattern (127 bp):
AAGTGTACGGCATGTAGCCATCCTGTATAAGGCTTTCAGCCTTTCTCTAATACTTAGGGCTAATA
GTCGTTCTATTAACTGGCAGCGTGGCTGAGATACTTACGGCCTTTAGCCGTACAGTCTATGA
Found at i:69895965 original size:27 final size:27
Alignment explanation
Indices: 69895935--69896013 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
69895925 CCCAATATTG
* *
69895935 GTAAAATTACCGAAATACCCTTGTAGT
1 GTAAAATGACCGTAATACCCTTGTAGT
* * *
69895962 GTAAAATGACTGTAATGCCCTTGTTGT
1 GTAAAATGACCGTAATACCCTTGTAGT
69895989 GTAAAATGACCGTAATACCCTTGTA
1 GTAAAATGACCGTAATACCCTTGTA
69896014 TGGTGGAATG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCTTGTAGT
Found at i:69896430 original size:22 final size:22
Alignment explanation
Indices: 69896405--69896452 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
69896395 ACCCACCCTA
69896405 TCTACGATGTTGAGT-CATCCTG
1 TCTACGATGTTGA-TCCATCCTG
*
69896427 TCTACGATGTTGATCCGTCCTG
1 TCTACGATGTTGATCCATCCTG
69896449 TCTA
1 TCTA
69896453 TGGCATTGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 1 0.04
22 23 0.96
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.38
Consensus pattern (22 bp):
TCTACGATGTTGATCCATCCTG
Found at i:69900476 original size:22 final size:22
Alignment explanation
Indices: 69900446--69900499 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
69900436 TGTTTCGATG
*
69900446 CTTCGACGTTATAGATCTGATC
1 CTTCAACGTTATAGATCTGATC
69900468 CTTCAACGTTATAGATCTGATC
1 CTTCAACGTTATAGATCTGATC
*
69900490 CATCACACGT
1 CTTCA-ACGT
69900500 AATTAATCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 25 0.86
23 4 0.14
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (22 bp):
CTTCAACGTTATAGATCTGATC
Found at i:69902473 original size:40 final size:40
Alignment explanation
Indices: 69902414--69902616 Score: 302
Period size: 40 Copynumber: 5.1 Consensus size: 40
69902404 TGGATGAGAA
* * *
69902414 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
69902454 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
69902494 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
69902534 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
69902574 CCAGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
69902614 CCG
1 CCG
69902617 ATTAAATCCC
Statistics
Matches: 150, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 3 0.02
40 147 0.98
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:69907884 original size:28 final size:28
Alignment explanation
Indices: 69907852--69907921 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
69907842 AATGAGATTG
*
69907852 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
69907880 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
*
69907908 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
69907922 GACTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 36 0.95
29 2 0.05
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:69915765 original size:28 final size:28
Alignment explanation
Indices: 69915732--69915801 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
69915722 AATGAGATTG
* *
69915732 GCACTAAGCGTGCGAGTTTAATTGTATAA
1 GCACTAAGTGTGCGAGTTTAATTAT-TAA
*
69915761 -CACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
69915788 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69915802 GACTTACTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.08
28 34 0.92
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:69920845 original size:654 final size:654
Alignment explanation
Indices: 69919592--69920897 Score: 2130
Period size: 654 Copynumber: 2.0 Consensus size: 654
69919582 ATTTACTCTT
*
69919592 TAGGTGACTTCTAGGCTTGGGCCTTGGCTAGGTATTGGTAAGTCTTCTTCTTAGGGCTTGTCGTC
1 TAGGCGACTTCTAGGCTTGGGCCTTGGCTAGGTATTGGTAAGTCTTCTTCTTAGGGCTTGTCGTC
*
69919657 TTCTTCCTCTAAGGGCTAAATGTACCCTTCCTACTCATTCTCTTTTTCACCTTAATGATTAACTT
66 TTCTTCCTCTAAGGGCTAAATGTACCCTTCCTACTCATTCTCTTTTTCACCTTAATGATTAACTA
* * *
69919722 GTAATATTGGGATTTTATCGAATGTTACTGGGGGCTCGATTTCTATAAGCAATGTGTTGGGTCGT
131 GTAATACTGGGATTTTATCGAATGTTACTGGGGGCTCGATTTCTATAAGCAAGGTGTTGGGTAGT
*
69919787 TTACTTTTCCTTTACAAGTGATAATTCCTCTACTGGTAAAGGTTCAAGTTATAGACATATCTGTA
196 TTACTTTTCCTTTACAAGTGATAATTCCTCTACTAGTAAAGGTTCAAGTTATAGACATATCTGTA
* *
69919852 TGGGATTATGGTTGTTTATGAGTTAGTTAACTGTTCATGTGAAGGTAAAGCTTTTGAAAGGAGTA
261 TGGGATTATAGATGTTTATGAGTTAGTTAACTGTTCATGTGAAGGTAAAGCTTTTGAAAGGAGTA
* * * *
69919917 CGTGGAGTTAGATCAAAGGAAGATTGCGATTATTGTTTGGTAAGTAGATGTTTTGGTTGTAACGG
326 CGTGGAGTTAGAGCAAAGGAAGATTACGATTATAGTTTGGTAAGTAGATGTTTTGGTTGCAACGG
* *
69919982 TTTCAATATTATGGTATTAGATTAACAAGGGTTTAAGGCTAGTGAGGGATTGTGGTTGATCATAG
391 TTTCAATATTATGGTATTAGATTAACAAGGGTTTAAGGCTAATGAGGGATTATGGTTGATCATAG
* *
69920047 GTTCTCGTTTCAGAAGTGGTTCAGTTACAACTCCATAGCAGGTGTGTATTCACACACTGAATAGA
456 GTTCTCGTTTCAGAAGTGGTTCAGTTACAACTCCATAGCAGGTGTATATTCACACACTGAATAAA
* * * * * *
69920112 TTGTAGAACGGCAAAAGCCGAGAAGCCGAAAGATGAAAAGCCAAAAGAATGGCTTTTTGACCACA
521 CTGTAGAACGGCAAAAGACAAAAAGCCGAAAGATGAAAAGCCAAAAGAATGACCTTTTGACCACA
* *
69920177 TAGGTGTGCGAACGCTTATGTGGTAAGCCAAGCCTACGAATCATGGGCATAAGACTGTAGAAGCC
586 TAGGTGTGCGAACGCTCATGTGGTAAGCCAAGCCCACGAATCATGGGCATAAGACTGTAGAAGCC
69920242 ACAA
651 ACAA
69920246 TAGGCGACTTCTAGGCTTGGGCCTTGGCTAGGTATTGGTAAGTCTTCTTCTTAGGGCTTGTCGTC
1 TAGGCGACTTCTAGGCTTGGGCCTTGGCTAGGTATTGGTAAGTCTTCTTCTTAGGGCTTGTCGTC
*
69920311 TTCTTCCTCTAAGGGCTAAATGTACCCTTCCTACTCATTCTCTTTTTCACCTTAATGATTGACTA
66 TTCTTCCTCTAAGGGCTAAATGTACCCTTCCTACTCATTCTCTTTTTCACCTTAATGATTAACTA
*
69920376 GTAATACTGGGATTTTATCGAATGTTACTGGGGGCTCGATTTCTATAAGCAAGGTGTTGGGTATT
131 GTAATACTGGGATTTTATCGAATGTTACTGGGGGCTCGATTTCTATAAGCAAGGTGTTGGGTAGT
* * *
69920441 TTACTTTTCCTTTACAAGTGATAATTCCTCTACTAGTAAGGGTTCAAGTTTTAGACATATTTGTA
196 TTACTTTTCCTTTACAAGTGATAATTCCTCTACTAGTAAAGGTTCAAGTTATAGACATATCTGTA
69920506 TGGGATTATAGATGTTTATGAGTTAGTTAACTGTTCATGTGAAGGTAAAGCTTTTG-AAGGAAGT
261 TGGGATTATAGATGTTTATGAGTTAGTTAACTGTTCATGTGAAGGTAAAGCTTTTGAAAGG-AGT
*
69920570 ACGTGGAGTTAGAGC-AAGGTAAGGTTACGATTATAGTTTGGTAAGTAGATGTTTTGGTTGCAAC
325 ACGTGGAGTTAGAGCAAAGG-AAGATTACGATTATAGTTTGGTAAGTAGATGTTTTGGTTGCAAC
* * * * *
69920634 GGTTTTAATATTATGGTATTGGGTTAACAAGGGTTTGAGGCTAATGAGGGGTTATGGTTGATCAT
389 GGTTTCAATATTATGGTATTAGATTAACAAGGGTTTAAGGCTAATGAGGGATTATGGTTGATCAT
** * * *
69920699 AGGTTCTCGTTTCAGAAGTGGTTTGGTTGCAACTTCATAGCAGGTGTATATTCACATACTGAATA
454 AGGTTCTCGTTTCAGAAGTGGTTCAGTTACAACTCCATAGCAGGTGTATATTCACACACTGAATA
* * * * *
69920764 AACTGTAGAACGGCAAAAGACAAAAAGGCGAAAGCTGAATAGCCGAAAGAATGACCTTTTGATCA
519 AACTGTAGAACGGCAAAAGACAAAAAGCCGAAAGATGAAAAGCCAAAAGAATGACCTTTTGACCA
* * * * *
69920829 CATGGGTGTGCGAACGCTCATGTGGTAAGCCAAGCCCACGAATCATGGGCGTACGATTGTAGAGG
584 CATAGGTGTGCGAACGCTCATGTGGTAAGCCAAGCCCACGAATCATGGGCATAAGACTGTAGAAG
69920894 CCAC
649 CCAC
69920898 CATGAGCATT
Statistics
Matches: 600, Mismatches: 50, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
653 8 0.01
654 592 0.99
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.34
Consensus pattern (654 bp):
TAGGCGACTTCTAGGCTTGGGCCTTGGCTAGGTATTGGTAAGTCTTCTTCTTAGGGCTTGTCGTC
TTCTTCCTCTAAGGGCTAAATGTACCCTTCCTACTCATTCTCTTTTTCACCTTAATGATTAACTA
GTAATACTGGGATTTTATCGAATGTTACTGGGGGCTCGATTTCTATAAGCAAGGTGTTGGGTAGT
TTACTTTTCCTTTACAAGTGATAATTCCTCTACTAGTAAAGGTTCAAGTTATAGACATATCTGTA
TGGGATTATAGATGTTTATGAGTTAGTTAACTGTTCATGTGAAGGTAAAGCTTTTGAAAGGAGTA
CGTGGAGTTAGAGCAAAGGAAGATTACGATTATAGTTTGGTAAGTAGATGTTTTGGTTGCAACGG
TTTCAATATTATGGTATTAGATTAACAAGGGTTTAAGGCTAATGAGGGATTATGGTTGATCATAG
GTTCTCGTTTCAGAAGTGGTTCAGTTACAACTCCATAGCAGGTGTATATTCACACACTGAATAAA
CTGTAGAACGGCAAAAGACAAAAAGCCGAAAGATGAAAAGCCAAAAGAATGACCTTTTGACCACA
TAGGTGTGCGAACGCTCATGTGGTAAGCCAAGCCCACGAATCATGGGCATAAGACTGTAGAAGCC
ACAA
Found at i:69922952 original size:49 final size:49
Alignment explanation
Indices: 69922888--69923112 Score: 288
Period size: 49 Copynumber: 4.5 Consensus size: 49
69922878 CTGGTACGCA
*
69922888 TAGTAGCATGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
* * ** * *
69922937 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCAGGTACACG
* * * *
69922987 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCAGGTACACG
* *
69923038 TAGTAGCCTGCACTTAGTACTGCACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
* *
69923087 TAGTAGCCTACACTTAGCACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
69923113 CGTGACCTCA
Statistics
Matches: 149, Mismatches: 24, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
49 64 0.43
50 47 0.32
51 38 0.26
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
Found at i:69923058 original size:101 final size:98
Alignment explanation
Indices: 69922888--69923119 Score: 311
Period size: 100 Copynumber: 2.3 Consensus size: 98
69922878 CTGGTACGCA
* * *
69922888 TAGTAGCATGCACTTAGTACTACACATGCGACCAATTATCAGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
*
69922953 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCTGATACACG
* *
69922987 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* * ** *
69923052 TAGTACTGCACATGCGACCAATTATCTGGTACACG
64 TAGTACTACACACGCGACCAACCATCTGATACACG
* * *
69923087 TAGTAGCCTACACTTAGCACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
69923120 TCACAATAGT
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 30 0.26
100 44 0.38
101 42 0.36
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCTGATACACG
Found at i:69923812 original size:29 final size:28
Alignment explanation
Indices: 69923761--69923816 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
69923751 CTTCAATACG
69923761 AACTTTGGCAAAATTACCATTTTGCCCCA
1 AACTTTGGCAAAATTACCATTTT-CCCCA
* *
69923790 AACTTTTGCATAATTA-CACTTTTCCCC
1 AACTTTGGCAAAATTACCA-TTTTCCCC
69923817 TAGGCTCGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.36
Consensus pattern (28 bp):
AACTTTGGCAAAATTACCATTTTCCCCA
Found at i:69925889 original size:15 final size:15
Alignment explanation
Indices: 69925871--69925903 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
69925861 GAAGCCAATA
69925871 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
69925886 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
69925901 ATA
1 ATA
69925904 TGAGAATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:69927874 original size:93 final size:93
Alignment explanation
Indices: 69927747--69927920 Score: 249
Period size: 93 Copynumber: 1.9 Consensus size: 93
69927737 GAGTTCGTGT
* * * ** * *
69927747 TAGGCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACCTATGGATGCGAATGTCTGAACTCATTG
1 TAGGCATCCGAACTCATTAAGTTGAGTCCAAGTTCACCTATGGATGCGAATGCCCGAACTCATTG
69927812 AGTTGAGTCCGAGTTCGTGAGATGTAAC
66 AGTTGAGTCCGAGTTCGTGAGATGTAAC
* * * *
69927840 TAGGTATCCGAACTCATTAAGTTGAGTCCAAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTG
1 TAGGCATCCGAACTCATTAAGTTGAGTCCAAGTTCACCTATGGATGCGAATGCCCGAACTCATTG
69927905 AGTTGAGTCCGAGTTC
66 AGTTGAGTCCGAGTTC
69927921 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (93 bp):
TAGGCATCCGAACTCATTAAGTTGAGTCCAAGTTCACCTATGGATGCGAATGCCCGAACTCATTG
AGTTGAGTCCGAGTTCGTGAGATGTAAC
Found at i:69927920 original size:46 final size:46
Alignment explanation
Indices: 69927756--69927925 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
69927746 TTAGGCATCT
* * * *
69927756 GAACTCGTTGAGTTGAGTCTGAGTTCACCTATGGATGCGAATGTCT
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
69927802 GAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGTATCC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* * *
69927849 GAACTCATTAAGTTGAGTCCAAGTTCACTTATGGATGCGAATGCCC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* *
69927895 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTA
69927926 GGGGCGGGTT
Statistics
Matches: 98, Mismatches: 17, Indels: 18
0.74 0.13 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 2 0.02
46 53 0.54
47 26 0.27
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (46 bp):
GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:69931658 original size:51 final size:49
Alignment explanation
Indices: 69931470--69931714 Score: 301
Period size: 49 Copynumber: 4.9 Consensus size: 49
69931460 TAGCCGAAGC
* * * **
69931470 TATCTGGTACGCATAGTAGCCCGCACTTAGTACTACACATGCAACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* * *
69931519 TATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC-AAT
* * *
69931569 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-T
* * * *
69931620 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* * *
69931669 TATCTGGTACACGTAGTAGCCTACACTTAGTACTAGACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
69931715 TCACAATAGC
Statistics
Matches: 165, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 79 0.48
50 47 0.28
51 39 0.24
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
Found at i:69932198 original size:33 final size:33
Alignment explanation
Indices: 69932161--69932228 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
69932151 ATATGCAATA
69932161 ATAGTAAGAAATATAATTCAAATATAACATTGC
1 ATAGTAAGAAATATAATTCAAATATAACATTGC
69932194 ATAGTAAGAAATATAATTCAAATATAACATTGC
1 ATAGTAAGAAATATAATTCAAATATAACATTGC
69932227 AT
1 AT
69932229 TATTATTATC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (33 bp):
ATAGTAAGAAATATAATTCAAATATAACATTGC
Found at i:69932429 original size:30 final size:30
Alignment explanation
Indices: 69932395--69932454 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
69932385 CTTTAATACG
69932395 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* * *
69932425 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
69932455 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:69932900 original size:17 final size:17
Alignment explanation
Indices: 69932878--69932913 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
69932868 TATGGAGAAG
* *
69932878 ATAACCTTTTTTTTGTT
1 ATAACCATTTTTGTGTT
69932895 ATAACCATTTTTGTGTT
1 ATAACCATTTTTGTGTT
69932912 AT
1 AT
69932914 TTTTCCCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.22, C:0.11, G:0.08, T:0.58
Consensus pattern (17 bp):
ATAACCATTTTTGTGTT
Found at i:69939725 original size:29 final size:28
Alignment explanation
Indices: 69939670--69939784 Score: 140
Period size: 29 Copynumber: 4.0 Consensus size: 28
69939660 GTGAGCATGA
* * *
69939670 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
69939698 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
69939727 ATATATAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
69939756 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
69939784 A
1 A
69939785 GATACAAGTA
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
28 27 0.36
29 49 0.64
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:69948373 original size:39 final size:39
Alignment explanation
Indices: 69948206--69948356 Score: 257
Period size: 39 Copynumber: 3.9 Consensus size: 39
69948196 ATATATACGT
*
69948206 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGC
69948245 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGC
* * *
69948284 GAAAATTATATCTGGACTTCATGTCCGCAGGCTATATGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGC
*
69948323 GAGAATTATATCCGGACTTTAGGTCCGCAGGCTA
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTA
69948357 CGTGTTGGAC
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 104 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (39 bp):
GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGC
Found at i:69950099 original size:43 final size:42
Alignment explanation
Indices: 69950012--69950141 Score: 136
Period size: 42 Copynumber: 3.1 Consensus size: 42
69950002 AACTTAGTAC
* * * * * **
69950012 CATACCAATGCTATATCCCAGATATAGTCTTACATGGGATCT
1 CATACCGATGCCATAGCCCATATATGGTCTTACATGAAATCT
*
69950054 CATATCGATGCCAATAGCCCA-ACTATGGTCTTACATGAAATCT
1 CATACCGATGCC-ATAGCCCATA-TATGGTCTTACATGAAATCT
* * *
69950097 CATACCGATGTCATATCCCATATATGGTTTTACATGAAATCT
1 CATACCGATGCCATAGCCCATATATGGTCTTACATGAAATCT
69950139 CAT
1 CAT
69950142 CTAACCCTAA
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 39 0.53
43 35 0.47
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (42 bp):
CATACCGATGCCATAGCCCATATATGGTCTTACATGAAATCT
Found at i:69950133 original size:42 final size:42
Alignment explanation
Indices: 69950024--69950141 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
69950014 TACCAATGCT
* ** *
69950024 ATATCCCAGATATAGTCTTACATGGGATCTCATATCGATGCCA
1 ATATCCCA-ATATGGTCTTACATGAAATCTCATACCGATGCCA
* *
69950067 ATAGCCCAACTATGGTCTTACATGAAATCTCATACCGATGTC-
1 ATATCCCAA-TATGGTCTTACATGAAATCTCATACCGATGCCA
*
69950109 ATATCCCATATATGGTTTTACATGAAATCTCAT
1 ATATCCCA-ATATGGTCTTACATGAAATCTCAT
69950142 CTAACCCTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
42 30 0.46
43 35 0.54
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (42 bp):
ATATCCCAATATGGTCTTACATGAAATCTCATACCGATGCCA
Found at i:69955002 original size:15 final size:15
Alignment explanation
Indices: 69954982--69955029 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 15
69954972 GGAAATTCAC
69954982 TTATGTTTTATTTTA
1 TTATGTTTTATTTTA
69954997 TTATGTTTTCATTATTATA
1 TTATGTTTT-A-T-TT-TA
*
69955016 TTATTTTTTATTTT
1 TTATGTTTTATTTT
69955030 TTACGTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
15 10 0.36
16 3 0.11
17 2 0.07
18 3 0.11
19 10 0.36
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.73
Consensus pattern (15 bp):
TTATGTTTTATTTTA
Found at i:69960876 original size:39 final size:40
Alignment explanation
Indices: 69960751--69960935 Score: 168
Period size: 40 Copynumber: 4.7 Consensus size: 40
69960741 GCTACTCCTT
* *
69960751 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
*
69960791 CAAATGCCTTCGGGACTTAACCC-GAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TTAGTAACTCGCA
* *
69960831 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATA-TCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTA-ACTCGCA
* * * * *
69960870 CAAATGCCTT-TGGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
*
69960911 CAAAT-ACTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69960936 CATCATTCGA
Statistics
Matches: 118, Mismatches: 16, Indels: 21
0.76 0.10 0.14
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 74 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:69963855 original size:5 final size:5
Alignment explanation
Indices: 69963845--69963886 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
69963835 AACGTTAGTC
* *
69963845 CTTTT CTTTT CTTTT CTTTT CTTTT AGTTTT CTTTT CATTT C
1 CTTTT CTTTT CTTTT CTTTT CTTTT -CTTTT CTTTT CTTTT C
69963887 ATCTTCATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
5 29 0.88
6 4 0.12
ACGTcount: A:0.05, C:0.19, G:0.02, T:0.74
Consensus pattern (5 bp):
CTTTT
Found at i:69963877 original size:16 final size:15
Alignment explanation
Indices: 69963845--69963886 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
69963835 AACGTTAGTC
69963845 CTTTTCTTTTCTTTT
1 CTTTTCTTTTCTTTT
*
69963860 CTTTTCTTTTAGTTTT
1 CTTTTCTTTT-CTTTT
*
69963876 CTTTTCATTTC
1 CTTTTCTTTTC
69963887 ATCTTCATTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.05, C:0.19, G:0.02, T:0.74
Consensus pattern (15 bp):
CTTTTCTTTTCTTTT
Found at i:69967097 original size:23 final size:23
Alignment explanation
Indices: 69967042--69967098 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
69967032 GGTATCACTG
* * * *
69967042 AATACGCCAAAAAGGCTTTACAG
1 AATACACCACAAAGCCTTTACAA
69967065 AATACACCACAAAGCCTTTACAA
1 AATACACCACAAAGCCTTTACAA
*
69967088 AATACTCCACA
1 AATACACCACA
69967099 CAGGTGTCAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.46, C:0.28, G:0.09, T:0.18
Consensus pattern (23 bp):
AATACACCACAAAGCCTTTACAA
Found at i:69969088 original size:13 final size:13
Alignment explanation
Indices: 69969070--69969094 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69969060 TCGACAGGGG
69969070 CACGCCCGTGTGA
1 CACGCCCGTGTGA
69969083 CACGCCCGTGTG
1 CACGCCCGTGTG
69969095 CAATTGCTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.32, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTGA
Found at i:69972773 original size:28 final size:28
Alignment explanation
Indices: 69972733--69972801 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
69972723 TAGTAAGTCT
*
69972733 GCACACTTAGTGCT-TAATAATCAAACTC
1 GCACACTTAGTGCTAT-ACAATCAAACTC
*
69972761 GCACACTTAGTGCTATACAATTAAACTC
1 GCACACTTAGTGCTATACAATCAAACTC
69972789 GCACACTTAGTGC
1 GCACACTTAGTGC
69972802 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (28 bp):
GCACACTTAGTGCTATACAATCAAACTC
Found at i:69974600 original size:39 final size:41
Alignment explanation
Indices: 69974500--69974683 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
69974490 TTGAATGATG
* *
69974500 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
69974539 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
69974579 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
69974618 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
69974658 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69974684 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
39 46 0.37
40 69 0.55
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:69974635 original size:79 final size:80
Alignment explanation
Indices: 69974500--69974683 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 80
69974490 TTGAATGATG
* *
69974500 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
69974564 GTGCGAGA-TACTA-A
66 GTGCGA-ATTACTATA
* * * **
69974578 TTCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
69974641 TTGTGCGAATTACTATA
64 TTGTGCGAATTACTATA
* *
69974658 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
69974684 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 2 0.02
79 67 0.74
80 22 0.24
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAATTACTATA
Found at i:69974705 original size:79 final size:79
Alignment explanation
Indices: 69974552--69974716 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
69974542 GGACTAAGAT
* ** *
69974552 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
69974617 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
69974631 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
69974693 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
69974710 CCGAAGG
1 CCGAAGG
69974717 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:69985138 original size:39 final size:40
Alignment explanation
Indices: 69985093--69985317 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
69985083 GCTCCTCGTT
* * * *
69985093 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
69985133 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
69985172 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
69985212 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
69985252 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
69985293 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
69985318 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 105 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:69985326 original size:41 final size:41
Alignment explanation
Indices: 69985249--69985326 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
69985239 CTTGTATCTC
* * *
69985249 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
69985290 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
69985327 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:69987838 original size:28 final size:28
Alignment explanation
Indices: 69987798--69987867 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
69987788 ATAGTAAGTC
*
69987798 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
69987826 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
*
69987854 CACACACTTAGTGC
1 CGCACACTTAGTGC
69987868 CAATCTCATT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:69999144 original size:27 final size:26
Alignment explanation
Indices: 69999066--69999152 Score: 93
Period size: 27 Copynumber: 3.3 Consensus size: 26
69999056 AGCATGGCTG
* *
69999066 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* * * *
69999092 CCAAATACAGATAGTGTAGTAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
69999119 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
69999146 CCAGAAC
1 CCAGAAC
69999153 GCTTCCTCCA
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
26 11 0.23
27 37 0.77
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:69999587 original size:16 final size:16
Alignment explanation
Indices: 69999566--69999601 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
69999556 ACAAAATGCT
69999566 GGCTCTTCAGCATTTC
1 GGCTCTTCAGCATTTC
* *
69999582 GGCTCTTCGGCTTTTC
1 GGCTCTTCAGCATTTC
69999598 GGCT
1 GGCT
69999602 TTTGTCGATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.06, C:0.31, G:0.25, T:0.39
Consensus pattern (16 bp):
GGCTCTTCAGCATTTC
Found at i:70006907 original size:27 final size:26
Alignment explanation
Indices: 70006823--70006909 Score: 84
Period size: 27 Copynumber: 3.3 Consensus size: 26
70006813 AGCATGGCTG
* *
70006823 CCAGAACAGATATTGTGACAAAGTCA
1 CCAGAACAGATATTGTGGCAAAGCCA
* **
70006849 CCAGATACAGATATTGTGGCAGAGCTT
1 CCAGA-ACAGATATTGTGGCAAAGCCA
* *
70006876 TCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAAAGCCA
*
70006903 GCAGAAC
1 CCAGAAC
70006910 GCTTCCACCA
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
26 12 0.24
27 37 0.76
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAAAGCCA
Found at i:70027133 original size:21 final size:22
Alignment explanation
Indices: 70027109--70027157 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
70027099 ATTTAGTCTC
70027109 AATTCT-AAAATTCAAAAACAT
1 AATTCTAAAAATTCAAAAACAT
*
70027130 AATTATAAAAAATTCAAAAACAT
1 AATTCT-AAAAATTCAAAAACAT
70027153 -ATTCT
1 AATTCT
70027158 TATAAAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 5 0.21
22 4 0.17
23 15 0.62
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (22 bp):
AATTCTAAAAATTCAAAAACAT
Found at i:70027192 original size:19 final size:18
Alignment explanation
Indices: 70027161--70027199 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
70027151 ATATTCTTAT
*
70027161 AAAAATAAAAAATATATA
1 AAAAATAAAAAATACATA
*
70027179 AAAAATCAATAAATACATA
1 AAAAAT-AAAAAATACATA
70027198 AA
1 AA
70027200 TTTTCAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (18 bp):
AAAAATAAAAAATACATA
Found at i:70028723 original size:36 final size:36
Alignment explanation
Indices: 70028680--70028753 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
70028670 AAAGAATAAA
70028680 TATTTTAATATTTATTTAAAGTCTATAGGATTATAT
1 TATTTTAATATTTATTTAAAGTCTATAGGATTATAT
70028716 TATTTTAATATTTATTTAAAGTCTATAGGATTATAT
1 TATTTTAATATTTATTTAAAGTCTATAGGATTATAT
70028752 TA
1 TA
70028754 GGGTCGTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (36 bp):
TATTTTAATATTTATTTAAAGTCTATAGGATTATAT
Found at i:70032645 original size:28 final size:28
Alignment explanation
Indices: 70032579--70032706 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
70032569 CATGAGATTG
* * **
70032579 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
70032608 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70032636 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
*
70032665 GCACTAAGTGTCCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70032693 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
70032707 GACTTACTAT
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 44 0.51
29 43 0.49
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70032668 original size:57 final size:57
Alignment explanation
Indices: 70032579--70032706 Score: 177
Period size: 57 Copynumber: 2.2 Consensus size: 57
70032569 CATGAGATTG
* *
70032579 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTCCAAGTTTGATTATATA
* * * *
70032636 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTCCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTCCAAGTTTGATTATATA
*
70032693 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
70032707 GACTTACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTCCAAGTTTGATTATATA
Found at i:70037791 original size:27 final size:27
Alignment explanation
Indices: 70037760--70038099 Score: 273
Period size: 27 Copynumber: 12.7 Consensus size: 27
70037750 TTACACTACA
* *
70037760 AGGGTATTTCGATAAATTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
70037787 GGGGTGTTTC-AGTAGTTTTACAAATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
70037814 AGGGTATGTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
70037841 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
70037868 AAGGTGTTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * * *
70037895 AGGGTGTTTCAATAATTTCACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
** *
70037922 AGGGTATTTTAATAATTTCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
70037948 AGGGTAGTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
70037975 GGGGTATTTCAATAATTTTAC-AAGCTG
1 AGGGTATTTCGATAATTTTACAAATC-G
* *
70038002 GGGGTATTTC-AGTAATTTTACAAACCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
70038029 AGGGTACGTT-GGTAATTTTACAAACCG
1 AGGGTA-TTTCGATAATTTTACAAATCG
* * *
70038056 GGGGTACTTC-AGTAATTTTACAAACCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
70038083 A-GGTATTTCGGTAATTT
1 AGGGTATTTCGATAATTT
70038100 CTCTTTATTA
Statistics
Matches: 258, Mismatches: 42, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
26 40 0.16
27 212 0.82
28 6 0.02
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:70038456 original size:28 final size:28
Alignment explanation
Indices: 70038432--70038507 Score: 125
Period size: 28 Copynumber: 2.7 Consensus size: 28
70038422 CCTAATCTCG
*
70038432 TTCACATGGCCCATTAGGCCCAATCACA
1 TTCAAATGGCCCATTAGGCCCAATCACA
70038460 TTCAAATGGCCCATTAGGCCCAATCACA
1 TTCAAATGGCCCATTAGGCCCAATCACA
* *
70038488 TTCATATGGACCATTAGGCC
1 TTCAAATGGCCCATTAGGCC
70038508 AAACTACTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.24
Consensus pattern (28 bp):
TTCAAATGGCCCATTAGGCCCAATCACA
Found at i:70068337 original size:37 final size:37
Alignment explanation
Indices: 70068287--70068365 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
70068277 TTATTACGAA
* * *
70068287 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
70068324 GTCTTACCCGGACAAAATCCCCACACGTAGTCATTGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
70068361 GTCTT
1 GTCTT
70068366 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:70068571 original size:47 final size:47
Alignment explanation
Indices: 70068528--70068909 Score: 667
Period size: 47 Copynumber: 8.1 Consensus size: 47
70068518 TTGGCCACTC
* * *
70068528 GGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
70068575 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
70068622 GGCCTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
70068669 GGCCTTATCACACACATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
70068716 GGCCCTATCACACATATACATTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
70068763 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
70068810 GGCC-TATCACACATATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
70068856 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
70068903 GGCCTTA
1 GGCCTTA
70068910 CTATCATTTC
Statistics
Matches: 321, Mismatches: 13, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
46 45 0.14
47 276 0.86
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (47 bp):
GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
Found at i:70072243 original size:46 final size:48
Alignment explanation
Indices: 70072140--70072459 Score: 250
Period size: 46 Copynumber: 6.8 Consensus size: 48
70072130 GGGTTATTGT
* * *
70072140 GAGCAAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATG-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAGATGTA
* * *
70072188 GTGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGTCCTCGAGATGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG-CCTCGAGATGTA
** *
70072235 -AGCCAGTGTAAGA-CATGTCTAAGACAT-GCATCGGCCACGAGATGT-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAGATGTA
* * * * *
70072280 --GTCAATGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCTC-GAGATGT-A
* * **
70072328 GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCG-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAGAT-GTA
* * * ** * * *
70072377 TAGTCAGTGTAAGACCATGTTTGGGACATGGCATCAACT--TGTTGGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGAGATGTA
70072423 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
70072460 GCATTATACC
Statistics
Matches: 221, Mismatches: 37, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
44 10 0.05
45 18 0.08
46 64 0.29
47 47 0.21
48 14 0.06
49 31 0.14
50 33 0.15
51 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGAGATGTA
Found at i:70072405 original size:49 final size:47
Alignment explanation
Indices: 70072285--70072458 Score: 172
Period size: 49 Copynumber: 3.6 Consensus size: 47
70072275 GATGTGTCAA
** * * *
70072285 TGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGA-GAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCAACTC-G-T-T-CGATGAGCCAG
* * *
70072335 TGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCGAT-AGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCA-ACTCG--TTCGATGAGCCAG
* * *
70072384 TGTAAGACCATGTTTGGGACATGGCATCAACTTGTTGGATGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCAACTCGTTCGATGAGCCAG
70072431 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
70072459 GGCATTATAC
Statistics
Matches: 105, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
46 5 0.05
47 32 0.30
48 3 0.03
49 33 0.31
50 29 0.28
51 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCAACTCGTTCGATGAGCCAG
Found at i:70072455 original size:96 final size:95
Alignment explanation
Indices: 70072139--70072458 Score: 272
Period size: 96 Copynumber: 3.4 Consensus size: 95
70072129 TGGGTTATTG
* *
70072139 TGAGCAAGTGTAAGACCATGTCTGGGACATGGCATCAG--C-ATTGAGATGAGTGCTAGTGTAAG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCCGATT-TGAT-AGT-C-AGTGTAAG
** *
70072201 A-CATGTTTGGGACAT-GCATCGTCCTCGAGAT-G-
62 ACCATGTTTGGGACATGGCATCGAACT--AGTTGGA
* ** * ** *
70072233 TAAGCCAGTGTAAGA-CATGTCTAAGACAT-GCATCGGCCACGAGATG-T-GTCAATGTAAGACC
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCC-CGATTTGATAGTCAGTGTAAGACC
* *
70072294 ATGTCTGGGACATGGCATCGGCAC-AGATATGTGA
65 ATGTTTGGGACATGGCATC-GAACTAG-T-TG-GA
* *
70072328 -GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCGATAGTCAGTGTAAGAC
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCC-CGATTT-GATAGTCAGTGTAAGAC
*
70072392 CATGTTTGGGACATGGCATC-AACTTGTTGGA
64 CATGTTTGGGACATGGCATCGAACTAGTTGGA
70072423 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
70072459 GGCATTATAC
Statistics
Matches: 179, Mismatches: 28, Indels: 36
0.74 0.12 0.15
Matches are distributed among these distances:
90 10 0.06
91 14 0.08
92 14 0.08
93 14 0.08
94 27 0.15
95 16 0.09
96 47 0.26
97 4 0.02
98 2 0.01
99 31 0.17
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (95 bp):
TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCCGATTTGATAGTCAGTGTAAGACCA
TGTTTGGGACATGGCATCGAACTAGTTGGA
Found at i:70087129 original size:24 final size:24
Alignment explanation
Indices: 70087079--70087132 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
70087069 AATCGAATTT
*
70087079 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
70087103 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
70087127 GCACAC
1 GCACAC
70087133 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:70089555 original size:93 final size:93
Alignment explanation
Indices: 70089443--70089614 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
70089433 CGCCCATAAG
* *
70089443 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70089508 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
70089536 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70089601 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70089615 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70089611 original size:46 final size:46
Alignment explanation
Indices: 70089436--70089611 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
70089426 TGTAACCCGC
* * *
70089436 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
70089482 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
70089532 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
70089575 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70089612 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70097085 original size:93 final size:93
Alignment explanation
Indices: 70096972--70097143 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
70096962 CGCCCATAAG
* * *
70096972 CGAACTCGGTCTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
70097036 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
70097065 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
70097130 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
70097144 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:70097135 original size:46 final size:46
Alignment explanation
Indices: 70096965--70097140 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
70096955 TGTAACCCGC
* * *
70096965 CCATAAGCGAACTCGGTCTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
* * *
70097011 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
70097061 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
70097104 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70097141 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 60 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70097159 original size:46 final size:44
Alignment explanation
Indices: 70097016--70097159 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
70097006 CGCATCCATA
*
70097016 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
70097063 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
70097109 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
70097155 AGTGA
1 AGTGA
70097160 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 30 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:70104736 original size:24 final size:24
Alignment explanation
Indices: 70104686--70104739 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
70104676 AATCGAATTT
*
70104686 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
70104710 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
70104734 GCACAC
1 GCACAC
70104740 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:70107038 original size:8 final size:8
Alignment explanation
Indices: 70107027--70107075 Score: 80
Period size: 8 Copynumber: 5.9 Consensus size: 8
70107017 ATTTAAGTAA
70107027 ATATTATT
1 ATATTATT
70107035 ATATTATT
1 ATATTATT
70107043 ATATTATT
1 ATATTATT
70107051 ATATTTTATT
1 ATA--TTATT
70107061 ATATTATT
1 ATATTATT
70107069 ATATTAT
1 ATATTAT
70107076 ATTACTACAA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
8 31 0.79
10 8 0.21
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
ATATTATT
Found at i:70107041 original size:5 final size:5
Alignment explanation
Indices: 70107031--70107079 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
70107021 AAGTAAATAT
*
70107031 TATTA TATTA T-TATA TTATTA TATTT TATTA TA-T- TATTA TATTA TATTA
1 TATTA TATTA TAT-TA -TATTA TATTA TATTA TATTA TATTA TATTA TATTA
70107080 CTACAATTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
3 2 0.05
4 3 0.08
5 28 0.76
6 3 0.08
7 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TATTA
Found at i:70107049 original size:13 final size:13
Alignment explanation
Indices: 70107031--70107079 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
70107021 AAGTAAATAT
70107031 TATTATATTATTA
1 TATTATATTATTA
*
70107044 TATTAT-TATATTT
1 TATTATAT-TATTA
70107057 TATTATATTATTA
1 TATTATATTATTA
70107070 TATTATATTA
1 TATTATATTA
70107080 CTACAATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 1 0.03
13 30 0.94
14 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:70107186 original size:11 final size:12
Alignment explanation
Indices: 70107156--70107197 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
70107146 GAGGGAAGGA
70107156 AAAAAGGAGAAAG
1 AAAAA-GAGAAAG
70107169 AAAAAGAGAAAG
1 AAAAAGAGAAAG
*
70107181 AAAAGAAAGAAA-
1 AAAA-AGAGAAAG
70107193 AAAAA
1 AAAAA
70107198 ATAGGGTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 1 0.04
12 15 0.56
13 11 0.41
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:70111734 original size:40 final size:40
Alignment explanation
Indices: 70111685--70111833 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 40
70111675 CGGAATTTAA
** *
70111685 CCGGATATAGCT-ACTCGTTCAAATGCCTTCAGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCAGGACATAAC
* * *
70111725 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACATAAC
* * * * *
70111765 CCGGATTTAGTAACTCGCACCAATGCCTTC-GGGCTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCAGGACATAAC
70111804 CCGGA-ATTAGTAACTCGCACAAATGCCTTC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTC
70111834 GGATCTTAGT
Statistics
Matches: 94, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 35 0.37
40 59 0.63
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCAGGACATAAC
Found at i:70111818 original size:39 final size:39
Alignment explanation
Indices: 70111704--70111888 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
70111694 GCTACTCGTT
* *
70111704 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGGCTTAGCCCGGATT-TAGTAACTCGCA
*
70111744 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATTTAGTAACTCGCA
* *
70111784 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
* * * * * * *
70111823 CAAATGCCTTCGGATCTTAGTCCGGCTATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATTTAGTAAC-TCGCA
70111864 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
70111889 CATCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 37 0.30
40 75 0.61
41 10 0.08
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
Found at i:70111872 original size:79 final size:80
Alignment explanation
Indices: 70111704--70111888 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
70111694 GCTACTCGTT
* * *
70111704 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
70111768 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* **
70111785 CAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
70111848 CTATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
70111864 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
70111889 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.66
80 24 0.27
81 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:70128085 original size:46 final size:46
Alignment explanation
Indices: 70128035--70128207 Score: 212
Period size: 46 Copynumber: 3.7 Consensus size: 46
70128025 TGGTTGAGCA
70128035 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70128081 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
70128126 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
70128174 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70128208 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 8, Indels: 20
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 60 0.55
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70128191 original size:93 final size:93
Alignment explanation
Indices: 70128032--70128202 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
70128022 GGATGGTTGA
*
70128032 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
70128097 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
70128125 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGAG
70128189 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
70128203 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 1 0.01
93 74 0.99
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70135736 original size:46 final size:46
Alignment explanation
Indices: 70135614--70135738 Score: 205
Period size: 46 Copynumber: 2.7 Consensus size: 46
70135604 GGTTGAGCAT
* * *
70135614 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
70135660 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
70135706 CCGAGCTCGTTGGGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70135739 GGGGCGGGTT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:70139113 original size:27 final size:26
Alignment explanation
Indices: 70139068--70139278 Score: 160
Period size: 27 Copynumber: 7.8 Consensus size: 26
70139058 AAGACCTCAA
*
70139068 TTTGTAAAAATAATGAAATACCCCCAG
1 TTTGT-AAAATTATGAAATACCCCCAG
* *
70139095 TTTGTAAAATTACTAAAATACCTCCAG
1 TTTGTAAAATTA-TGAAATACCCCCAG
*
70139122 TTTGTAAAATTACCGAAATACCCCC-G
1 TTTGTAAAATTA-TGAAATACCCCCAG
* **
70139148 ATTTGTAAAATTACTGAAACA-CCCTTG
1 -TTTGTAAAATTA-TGAAATACCCCCAG
70139175 ATTTGTAAAATTATCGAAATA-CCCCAG
1 -TTTGTAAAATTAT-GAAATACCCCCAG
* * **
70139202 TTTGTAAAATTATCAAAATATCCTTAG
1 TTTGTAAAATTAT-GAAATACCCCCAG
* **
70139229 TTTGTAAAATTATCAAAATACCCTTA-
1 TTTGTAAAATTAT-GAAATACCCCCAG
*
70139255 TAGTGTAAAATTATCGAAATACCC
1 T-TTGTAAAATTAT-GAAATACCC
70139279 TTATAGTGTA
Statistics
Matches: 160, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
26 31 0.19
27 129 0.81
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.32
Consensus pattern (26 bp):
TTTGTAAAATTATGAAATACCCCCAG
Found at i:70139142 original size:54 final size:54
Alignment explanation
Indices: 70139068--70139251 Score: 218
Period size: 54 Copynumber: 3.4 Consensus size: 54
70139058 AAGACCTCAA
* *
70139068 TTTGTAAAAATAAT-GAAATACCCCCAGTTTGTAAAATTACTAAAATACCTCCAG
1 TTTGT-AAAATTATCGAAATACCCCCAGTTTGTAAAATTACTAAAATACCTCTAG
* * * *
70139122 TTTGTAAAATTACCGAAATACCCCC-GATTTGTAAAATTACTGAAACACC-CTTG
1 TTTGTAAAATTATCGAAATACCCCCAG-TTTGTAAAATTACTAAAATACCTCTAG
70139175 ATTTGTAAAATTATCGAAATA-CCCCAGTTTGTAAAATTA-TCAAAATATCCT-TAG
1 -TTTGTAAAATTATCGAAATACCCCCAGTTTGTAAAATTACT-AAAATA-CCTCTAG
*
70139229 TTTGTAAAATTATCAAAATACCC
1 TTTGTAAAATTATCGAAATACCC
70139252 TTATAGTGTA
Statistics
Matches: 111, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
52 1 0.01
53 48 0.43
54 62 0.56
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.32
Consensus pattern (54 bp):
TTTGTAAAATTATCGAAATACCCCCAGTTTGTAAAATTACTAAAATACCTCTAG
Found at i:70139233 original size:80 final size:79
Alignment explanation
Indices: 70139095--70139278 Score: 212
Period size: 80 Copynumber: 2.3 Consensus size: 79
70139085 ATACCCCCAG
* * *
70139095 TTTGTAAAATTA-CTAAAATACCTCCAGTTTGTAAAATTACCGAAATACCCCCGATTTGTAAAAT
1 TTTGTAAAATTATC-GAAATACC-CCAGTTTGTAAAATTACCAAAATACCCCAGATTTGTAAAAT
*
70139159 TA-CTGAAACACCCTTGA
64 TATC-AAAACACCCTT-A
* **
70139176 TTTGTAAAATTATCGAAATACCCCAGTTTGTAAAATTATCAAAATATCCTTAG-TTTGTAAAATT
1 TTTGTAAAATTATCGAAATACCCCAGTTTGTAAAATTACCAAAATA-CCCCAGATTTGTAAAATT
*
70139240 ATCAAAATACCCTTA
65 ATCAAAACACCCTTA
*
70139255 TAGTGTAAAATTATCGAAATACCC
1 T-TTGTAAAATTATCGAAATACCC
70139279 TTATAGTGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
79 2 0.02
80 64 0.71
81 23 0.26
82 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (79 bp):
TTTGTAAAATTATCGAAATACCCCAGTTTGTAAAATTACCAAAATACCCCAGATTTGTAAAATTA
TCAAAACACCCTTA
Found at i:70139262 original size:107 final size:106
Alignment explanation
Indices: 70139067--70139306 Score: 276
Period size: 107 Copynumber: 2.2 Consensus size: 106
70139057 TAAGACCTCA
*
70139067 ATTTGTAAAAATAAT-GAAATACCCCCAGTTTGTAAAATTACTAAAATACCTCCAGTTTGTAAAA
1 ATTTGT-AAAATTATCGAAATA-CCCCAGTTTGTAAAATTACTAAAATACCTCCAGTTTGTAAAA
* *
70139131 TTACCGAAATACCCCCGATTTGTAAAATTA-CTGAAACACCCTT
64 TTACCAAAATACCCCCGATGTGTAAAATTATC-GAAACACCCTT
*
70139174 GATTTGTAAAATTATCGAAATACCCCAGTTTGTAAAATTA-TCAAAATATCCT-TAGTTTGTAAA
1 -ATTTGTAAAATTATCGAAATACCCCAGTTTGTAAAATTACT-AAAATA-CCTCCAGTTTGTAAA
* ** *
70139237 ATTATCAAAATA-CCCTTATAGTGTAAAATTATCGAAATACCCTT
63 ATTACCAAAATACCCCCGAT-GTGTAAAATTATCGAAACACCCTT
*
70139281 ATAGTGTAAAATTA-CAGAAATACCCC
1 AT-TTGTAAAATTATC-GAAATACCCC
70139307 TGTAGCGCAA
Statistics
Matches: 116, Mismatches: 9, Indels: 15
0.83 0.06 0.11
Matches are distributed among these distances:
106 9 0.08
107 91 0.78
108 16 0.14
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.32
Consensus pattern (106 bp):
ATTTGTAAAATTATCGAAATACCCCAGTTTGTAAAATTACTAAAATACCTCCAGTTTGTAAAATT
ACCAAAATACCCCCGATGTGTAAAATTATCGAAACACCCTT
Found at i:70139279 original size:27 final size:26
Alignment explanation
Indices: 70139122--70139305 Score: 185
Period size: 27 Copynumber: 6.9 Consensus size: 26
70139112 ATACCTCCAG
* **
70139122 TTTGTAAAATTACCGAAATACCCCCGA
1 TTTGTAAAATTATCGAAATA-CCCTTA
*
70139149 TTTGTAAAATTA-CTGAAACACCCTTGA
1 TTTGTAAAATTATC-GAAATACCCTT-A
*
70139176 TTTGTAAAATTATCGAAATACCC-CA
1 TTTGTAAAATTATCGAAATACCCTTA
* *
70139201 GTTTGTAAAATTATCAAAATATCCTTA
1 -TTTGTAAAATTATCGAAATACCCTTA
*
70139228 GTTTGTAAAATTATCAAAATACCCTTA
1 -TTTGTAAAATTATCGAAATACCCTTA
*
70139255 TAGTGTAAAATTATCGAAATACCCTTA
1 T-TTGTAAAATTATCGAAATACCCTTA
*
70139282 TAGTGTAAAATTA-CAGAAATACCC
1 T-TTGTAAAATTATC-GAAATACCC
70139306 CTGTAGCGCA
Statistics
Matches: 139, Mismatches: 11, Indels: 14
0.85 0.07 0.09
Matches are distributed among these distances:
25 1 0.01
26 27 0.19
27 110 0.79
28 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (26 bp):
TTTGTAAAATTATCGAAATACCCTTA
Found at i:70139281 original size:54 final size:52
Alignment explanation
Indices: 70139083--70139306 Score: 190
Period size: 54 Copynumber: 4.2 Consensus size: 52
70139073 AAAAATAATG
* * * *
70139083 AAATACCCCCAGTTTGTAAAATTA-CTAAAATA-CCTCCAGTTTGTAAAATTACCG
1 AAATA-CCCCA-TTTGTAAAATTATC-GAAATACCCT-TAGTTTGTAAAATTATCA
* *
70139137 AAATACCCCCGATTTGTAAAATTA-CTGAAACACCCTT-GATTTGTAAAATTATCG
1 AAATA-CCCC-ATTTGTAAAATTATC-GAAATACCCTTAG-TTTGTAAAATTATCA
* *
70139191 AAATACCCCAGTTTGTAAAATTATCAAAATATCCTTAGTTTGTAAAATTATCA
1 AAATACCCCA-TTTGTAAAATTATCGAAATACCCTTAGTTTGTAAAATTATCA
* * *
70139244 AAATACCCTTATAGTGTAAAATTATCGAAATACCCTTA-TAGTGTAAAATTA-CA
1 AAATACCC-CAT-TTGTAAAATTATCGAAATACCCTTAGT-TTGTAAAATTATCA
70139297 GAAATACCCC
1 -AAATACCCC
70139307 TGTAGCGCAA
Statistics
Matches: 146, Mismatches: 14, Indels: 21
0.81 0.08 0.12
Matches are distributed among these distances:
52 1 0.01
53 51 0.35
54 90 0.62
55 4 0.03
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (52 bp):
AAATACCCCATTTGTAAAATTATCGAAATACCCTTAGTTTGTAAAATTATCA
Found at i:70139319 original size:54 final size:54
Alignment explanation
Indices: 70139207--70139319 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 54
70139197 CCCAGTTTGT
* * * * *
70139207 AAAATTATCAAAATATCCTTAGTTTGTAAAATTATCAAAATACCCTTATAGTGT
1 AAAATTATCAAAATACCCTTAGTGTGTAAAATTATCAAAATACCCCTATAGCGC
* *
70139261 AAAATTATCGAAATACCCTTA-TAGTGTAAAATTA-CAGAAATACCCCTGTAGCGC
1 AAAATTATCAAAATACCCTTAGT-GTGTAAAATTATCA-AAATACCCCTATAGCGC
70139315 AAAAT
1 AAAAT
70139320 GACTATTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 3 0.06
54 47 0.94
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (54 bp):
AAAATTATCAAAATACCCTTAGTGTGTAAAATTATCAAAATACCCCTATAGCGC
Found at i:70142119 original size:56 final size:56
Alignment explanation
Indices: 70142052--70142318 Score: 408
Period size: 56 Copynumber: 4.8 Consensus size: 56
70142042 GAAGTATATG
* *
70142052 TGGCATCGATATGTGACTTTGATATATATGTGCGAGTAAGTCCACGTTTAATACGT
1 TGGCATCGATATGTGACTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGT
* * * *
70142108 TGGCATCGATATGTGACTCCGATATATATGTGCGAGTAAGTCCACATTTAATACAT
1 TGGCATCGATATGTGACTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGT
* *
70142164 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGACCATGTTTAATACGT
1 TGGCATCGATATGTGACTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGT
* *
70142220 TGGCATCAATATGTGACTCCGATATATATGTGCGAGTAAGACCACGTTTAATACGT
1 TGGCATCGATATGTGACTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGT
* * * *
70142276 TGGCATCGATATATGACTCTGATATTTGTGTACGAGTAAGACC
1 TGGCATCGATATGTGACTCTGATATATATGTGCGAGTAAGACC
70142319 TTGTCTGAGG
Statistics
Matches: 191, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 191 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.33
Consensus pattern (56 bp):
TGGCATCGATATGTGACTCTGATATATATGTGCGAGTAAGACCACGTTTAATACGT
Found at i:70147962 original size:24 final size:24
Alignment explanation
Indices: 70147913--70147965 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
70147903 ATCGAATTTC
*
70147913 CACACATAGTGCTCGTCACACTCG
1 CACACATAGTGCTAGTCACACTCG
70147937 CACACATAGTGCCATAGT-ACAC-CG
1 CACACATAGTG-C-TAGTCACACTCG
70147961 CACAC
1 CACAC
70147966 TCAGTGCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 18 0.69
25 5 0.19
26 3 0.12
ACGTcount: A:0.30, C:0.38, G:0.15, T:0.17
Consensus pattern (24 bp):
CACACATAGTGCTAGTCACACTCG
Found at i:70150577 original size:27 final size:27
Alignment explanation
Indices: 70150536--70150696 Score: 186
Period size: 27 Copynumber: 6.0 Consensus size: 27
70150526 TTAAGACCTT
70150536 AGTTTGTAAAATTACTAAAATACCCCC
1 AGTTTGTAAAATTACTAAAATACCCCC
*
70150563 AGCTTGTAAAATTACTAAAATACCCCC
1 AGTTTGTAAAATTACTAAAATACCCCC
*
70150590 -GATTTGTAAAATTAC-AGAAATAGCCCC
1 AG-TTTGTAAAATTACTA-AAATACCCCC
*
70150617 AGTTTGTAAAATTACCAAAATACCCCC
1 AGTTTGTAAAATTACTAAAATACCCCC
* ** *
70150644 -GATTTGTAAAATTACCAAAATAATCTC
1 AG-TTTGTAAAATTACTAAAATACCCCC
*
70150671 AATTTGTAAAATTA-TCAAAATACCCC
1 AGTTTGTAAAATTACT-AAAATACCCC
70150697 TGTAGTGTAA
Statistics
Matches: 115, Mismatches: 12, Indels: 14
0.82 0.09 0.10
Matches are distributed among these distances:
26 3 0.03
27 110 0.96
28 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AGTTTGTAAAATTACTAAAATACCCCC
Found at i:70150624 original size:54 final size:53
Alignment explanation
Indices: 70150538--70150696 Score: 212
Period size: 54 Copynumber: 2.9 Consensus size: 53
70150528 AAGACCTTAG
* *
70150538 TTTGTAAAATTACTAAAATACCCCCAGCTTGTAAAATTACTAAAATACCCCCGA
1 TTTGTAAAATTAC-AAAATAACCCCAGTTTGTAAAATTACTAAAATACCCCCGA
* *
70150592 TTTGTAAAATTACAGAAATAGCCCCAGTTTGTAAAATTACCAAAATACCCCCGA
1 TTTGTAAAATTACA-AAATAACCCCAGTTTGTAAAATTACTAAAATACCCCCGA
* * *
70150646 TTTGTAAAATTACCAAAATAATCTCAATTTGTAAAATTA-TCAAAATACCCC
1 TTTGTAAAATTA-CAAAATAACCCCAGTTTGTAAAATTACT-AAAATACCCC
70150697 TGTAGTGTAA
Statistics
Matches: 94, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
53 1 0.01
54 91 0.97
55 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (53 bp):
TTTGTAAAATTACAAAATAACCCCAGTTTGTAAAATTACTAAAATACCCCCGA
Found at i:70150676 original size:81 final size:80
Alignment explanation
Indices: 70150536--70150711 Score: 221
Period size: 81 Copynumber: 2.2 Consensus size: 80
70150526 TTAAGACCTT
* * * *
70150536 AGTTTGTAAAATTACTAAAATACCCCCAGCTTGTAAAATTACTAAAATACCCCCGATTTGTAAAA
1 AGTTTGTAAAATTACCAAAATACCCCCAGCTTGTAAAATTACCAAAATAACCCCAATTTGTAAAA
70150601 TTA-CAGAAATAGCCCC
66 TTATCA-AAATA-CCCC
* * *
70150617 AGTTTGTAAAATTACCAAAATACCCCC-GATTTGTAAAATTACCAAAATAATCTCAATTTGTAAA
1 AGTTTGTAAAATTACCAAAATACCCCCAG-CTTGTAAAATTACCAAAATAACCCCAATTTGTAAA
70150681 ATTATCAAAATACCCC
65 ATTATCAAAATACCCC
* *
70150697 TGTAGTGTAAAATTA
1 AGT-TTGTAAAATTA
70150712 TCGAAATTCC
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
80 7 0.08
81 74 0.89
82 2 0.02
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (80 bp):
AGTTTGTAAAATTACCAAAATACCCCCAGCTTGTAAAATTACCAAAATAACCCCAATTTGTAAAA
TTATCAAAATACCCC
Found at i:70150705 original size:27 final size:27
Alignment explanation
Indices: 70150539--70150754 Score: 147
Period size: 27 Copynumber: 8.0 Consensus size: 27
70150529 AGACCTTAGT
* * *
70150539 TTGTAAAATTACTAAAATACCCCCAG-C
1 TTGTAAAATTACCAAAATA-CCCCTGTA
* *
70150566 TTGTAAAATTACTAAAATACCCCCG-A
1 TTGTAAAATTACCAAAATACCCCTGTA
*
70150592 TTTGTAAAATTA-CAGAAATAGCCCCAGT-
1 -TTGTAAAATTACCA-AAATA-CCCCTGTA
*
70150620 TTGTAAAATTACCAAAATACCCCCG-A
1 TTGTAAAATTACCAAAATACCCCTGTA
** **
70150646 TTTGTAAAATTACCAAAATA-ATCTCAA
1 -TTGTAAAATTACCAAAATACCCCTGTA
*
70150673 TTTGTAAAATTATCAAAATACCCCTGTA
1 -TTGTAAAATTACCAAAATACCCCTGTA
* * * * * *
70150701 GTGTAAAATTATCGAAATTCCCTTATA
1 TTGTAAAATTACCAAAATACCCCTGTA
* * *
70150728 GTGTAAAATTACCGAAATACCCTTGTA
1 TTGTAAAATTACCAAAATACCCCTGTA
70150755 GGGCAAAATG
Statistics
Matches: 158, Mismatches: 22, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
26 12 0.08
27 136 0.86
28 10 0.06
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGTA
Done.