Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 213 of 352
Found at i:70151293 original size:32 final size:32
Alignment explanation
Indices: 70151243--70151338 Score: 77
Period size: 32 Copynumber: 3.0 Consensus size: 32
70151233 TCAATCATAT
* **
70151243 TTACCCATGGCTGTGTGCCGATTATATTACCG
1 TTACCGATGGCTACGTGCCGATTATATTACCG
* * * *
70151275 TTGCTGATGGCTACGTGCCAGACT-TATTACAG
1 TTACCGATGGCTACGTGCC-GATTATATTACCG
** * *
70151307 TTACCGATGGCTTTGTGCCAATTATAATACCG
1 TTACCGATGGCTACGTGCCGATTATATTACCG
70151339 CTACTGAAGT
Statistics
Matches: 47, Mismatches: 15, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
31 2 0.04
32 42 0.89
33 3 0.06
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (32 bp):
TTACCGATGGCTACGTGCCGATTATATTACCG
Found at i:70160028 original size:57 final size:57
Alignment explanation
Indices: 70159937--70160051 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
70159927 AAATTTAAAG
* *
70159937 AAGGACAATGACTAAATTGGAAATTGAAATAATTAAAAGATGGTAATAGAAAATATC
1 AAGGACAAGGACTAAATTGGAAATTGAAACAATTAAAAGATGGTAATAGAAAATATC
70159994 AAGGACAAGGACTAAATTGGAAATTGAAACAATTAAAAGATGGTAATAGAAAATATC
1 AAGGACAAGGACTAAATTGGAAATTGAAACAATTAAAAGATGGTAATAGAAAATATC
70160051 A
1 A
70160052 TCTTATTTTC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.53, C:0.06, G:0.18, T:0.23
Consensus pattern (57 bp):
AAGGACAAGGACTAAATTGGAAATTGAAACAATTAAAAGATGGTAATAGAAAATATC
Found at i:70165174 original size:26 final size:26
Alignment explanation
Indices: 70165117--70165200 Score: 104
Period size: 26 Copynumber: 3.3 Consensus size: 26
70165107 CTGGAGGCCT
70165117 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
70165141 AGCCCTTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
70165167 AGCCCTTTTCAATAAACTGGGGCAT-
1 AGCCCTTTTCAATAAACTGGGGCATA
70165192 AGCCCTTTT
1 AGCCCTTTT
70165201 GCACTTCCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 5 0.10
24 5 0.10
25 18 0.35
26 23 0.45
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:70165303 original size:20 final size:20
Alignment explanation
Indices: 70165250--70165324 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
70165240 TTATGATTAC
* *
70165250 ATCATGTGCATTTAATACAT
1 ATCATGTGCATATCATACAT
*
70165270 ATAATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
70165290 ATCATGTGCATATCATATCAT
1 ATCATGTGCATATCATA-CAT
70165311 -TCATGT--ATATCATA
1 ATCATGTGCATATCATA
70165325 TCCCACATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
18 8 0.16
20 39 0.78
21 3 0.06
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:70165308 original size:5 final size:5
Alignment explanation
Indices: 70165278--70165326 Score: 50
Period size: 5 Copynumber: 10.2 Consensus size: 5
70165268 ATATAATGTG
* *
70165278 CATAT CATA- CATAT CATGT GCATAT CATAT CAT-T CATGT -ATAT CATAT
1 CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CATAT CATAT CATAT
70165326 C
1 C
70165327 CCACATATCA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
4 11 0.30
5 22 0.59
6 4 0.11
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.39
Consensus pattern (5 bp):
CATAT
Found at i:70168012 original size:47 final size:47
Alignment explanation
Indices: 70167932--70168101 Score: 259
Period size: 47 Copynumber: 3.6 Consensus size: 47
70167922 ATATTTGAGT
* * ** * *
70167932 TCCGAACTCATTGAGATGAGTCTAAGTTTGTGAGATGTAACTAAGCA
1 TCCGAACTCCTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
70167979 TCCGAACTCCTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCCTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* *
70168026 TCCGAACTCGTTGAGTTGAATCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCCTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
*
70168073 TCCAAACTCCTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCCTTGAGTTGAGTCCGAGTTC
70168102 ACTTATGGAT
Statistics
Matches: 112, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 112 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (47 bp):
TCCGAACTCCTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:70169399 original size:29 final size:29
Alignment explanation
Indices: 70169357--70169418 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
70169347 ATGCATGAGT
70169357 TATTGGTATTTTGATGGATTATGGAGGAA
1 TATTGGTATTTTGATGGATTATGGAGGAA
70169386 TATTGGTATTTTGATGGATTATGGAGGAA
1 TATTGGTATTTTGATGGATTATGGAGGAA
70169415 TATT
1 TATT
70169419 AAAAATACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.44
Consensus pattern (29 bp):
TATTGGTATTTTGATGGATTATGGAGGAA
Found at i:70174264 original size:47 final size:47
Alignment explanation
Indices: 70174198--70174510 Score: 332
Period size: 47 Copynumber: 6.7 Consensus size: 47
70174188 ATTTTTGGCT
** *
70174198 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCA-GATGAGAGCC
* * * * *
70174244 AGTGTAAGACCATGTTTGGGAAATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTCAGATGAGAGCC
* * * *
70174292 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGACGAAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTC-AGATGAGAGCC
* * * * *
70174338 AGTGTAAGA-CATGTTTGGGACAT-GCATAGGCTATGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TCAGATGAGAGCC
* * * *
70174384 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCAGATGAGAGCC
* * *
70174431 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCAGATGAGAGCC
70174478 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
70174511 ACCTTACCCA
Statistics
Matches: 228, Mismatches: 32, Indels: 13
0.84 0.12 0.05
Matches are distributed among these distances:
45 1 0.00
46 71 0.31
47 124 0.54
48 31 0.14
49 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCAGATGAGAGCC
Found at i:70174453 original size:140 final size:140
Alignment explanation
Indices: 70174198--70174502 Score: 373
Period size: 140 Copynumber: 2.2 Consensus size: 140
70174188 ATTTTTGGCT
* * * *
70174198 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATAGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAG
* * *
70174263 GAAATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCG
66 GAAATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCTAGGACATGGCATC-GACTCG
70174327 AGACGAAAGCC
130 AGACGAAAGCC
* * * * *
70174338 AGTGTAAGACATGTTTGGGACATGCATAGGCTATGA-GATGATAGTCAGTGTAAGACCATGTCTA
1 AGTGTAAGACATGTCTGGGACATGCATAGGCCA-CATGATGAGAGCCAGTGTAAGACCATGTCTA
* * * * *
70174402 GGACATGGCATCGAC-TTGAGATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTT
65 GGAAATGGCATCGACATTGAGACGAGAGCCAGTGTAAGA-CATGTCTAGGACATGGCATCGACTC
* **
70174466 GAGATGTGAGCC
129 GAGACGAAAGCC
70174478 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
70174503 GCATCGGCAC
Statistics
Matches: 140, Mismatches: 21, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
139 20 0.14
140 100 0.71
141 20 0.14
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATAGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAG
GAAATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCGACTCGA
GACGAAAGCC
Found at i:70177047 original size:4 final size:4
Alignment explanation
Indices: 70177038--70177068 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
70177028 ATATGAGTCC
70177038 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTA
70177069 GAAAGAAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:70178538 original size:165 final size:165
Alignment explanation
Indices: 70178266--70178597 Score: 610
Period size: 165 Copynumber: 2.0 Consensus size: 165
70178256 TTTTTAGAAT
*
70178266 TATAAGAATTACATAAACATCCATTTATTAATAAATTTAAACCTTGTTATAACGTAGACCAAGAG
1 TATAAGAATTACATAAACATCCATTTATTAATAAATTTAAACCTTGTTATAACGTAGACAAAGAG
*
70178331 TCCGCCACTAACGAGACTCTTGCCACTGATCGGCGAAAAAGTTGTAAGGTTAAAAATGGGGCGGT
66 TCCGCCACTAACGAGACTCTTGCCACTGATCGGCGAAAAAGTTATAAGGTTAAAAATGGGGCGGT
*
70178396 TTACCCTTCAGACTGAACTGACCTGGTTTATTTCC
131 TTACCCTTCAGACTGAACTGACATGGTTTATTTCC
* * *
70178431 TATAAGAATTACATAAATATCCATTTATTAATAAATTTAAATCTTGTTATAGCGTAGACAAAGAG
1 TATAAGAATTACATAAACATCCATTTATTAATAAATTTAAACCTTGTTATAACGTAGACAAAGAG
70178496 TCCGCCACTAACGAGACTCTTGCCACTGATCGGCGAAAAAGTTATAAGGTTAAAAATGGGGCGGT
66 TCCGCCACTAACGAGACTCTTGCCACTGATCGGCGAAAAAGTTATAAGGTTAAAAATGGGGCGGT
70178561 TTACCCTTCAGACTGAACTGACATGGTTTATTTCC
131 TTACCCTTCAGACTGAACTGACATGGTTTATTTCC
70178596 TA
1 TA
70178598 CTATTTGGTT
Statistics
Matches: 161, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
165 161 1.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (165 bp):
TATAAGAATTACATAAACATCCATTTATTAATAAATTTAAACCTTGTTATAACGTAGACAAAGAG
TCCGCCACTAACGAGACTCTTGCCACTGATCGGCGAAAAAGTTATAAGGTTAAAAATGGGGCGGT
TTACCCTTCAGACTGAACTGACATGGTTTATTTCC
Found at i:70180038 original size:24 final size:24
Alignment explanation
Indices: 70180009--70180080 Score: 144
Period size: 24 Copynumber: 3.0 Consensus size: 24
70179999 AATATTTGCA
70180009 GAAAAAGTTCAATTTTGAGTCTTT
1 GAAAAAGTTCAATTTTGAGTCTTT
70180033 GAAAAAGTTCAATTTTGAGTCTTT
1 GAAAAAGTTCAATTTTGAGTCTTT
70180057 GAAAAAGTTCAATTTTGAGTCTTT
1 GAAAAAGTTCAATTTTGAGTCTTT
70180081 CTGTTGAAGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (24 bp):
GAAAAAGTTCAATTTTGAGTCTTT
Found at i:70183472 original size:29 final size:29
Alignment explanation
Indices: 70183439--70183512 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
70183429 GTTGTGAGAT
* *
70183439 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
70183468 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
70183497 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70183513 CAATTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:70192471 original size:41 final size:41
Alignment explanation
Indices: 70192426--70192556 Score: 101
Period size: 39 Copynumber: 3.1 Consensus size: 41
70192416 AAAACATGTC
70192426 ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
1 ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
* * ** * *
70192467 ATAAAGA-GCAT-GGGT-G-GACAAGATGTTATGG-TTAAAAACA
1 ATAAACATG-TTGGGGTAGTG-CATTATG-TAAGGATTAATAA-A
70192507 TGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
1 ----ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
70192552 ATAAA
1 ATAAA
70192557 GGGCATGGGC
Statistics
Matches: 65, Mismatches: 12, Indels: 26
0.63 0.12 0.25
Matches are distributed among these distances:
38 1 0.02
39 12 0.18
40 10 0.15
41 12 0.18
44 7 0.11
45 10 0.15
46 12 0.18
47 1 0.02
ACGTcount: A:0.40, C:0.06, G:0.24, T:0.29
Consensus pattern (41 bp):
ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
Found at i:70192530 original size:85 final size:85
Alignment explanation
Indices: 70192387--70192565 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
70192377 GGCCGGCCAT
70192387 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
70192452 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
70192472 GAGCATGGGTGGACAAGATGTTATGGTTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
70192537 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
70192557 GGGCATGGG
1 GAGCATGGG
70192566 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:70194799 original size:47 final size:47
Alignment explanation
Indices: 70194748--70195021 Score: 415
Period size: 47 Copynumber: 5.7 Consensus size: 47
70194738 TTAGGATTCT
* * * *
70194748 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
70194795 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
70194842 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
70194891 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
70194940 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
70194987 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
70195022 TCCCGAAGGG
Statistics
Matches: 215, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 118 0.55
49 96 0.45
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:70194886 original size:96 final size:94
Alignment explanation
Indices: 70194748--70195021 Score: 424
Period size: 96 Copynumber: 2.9 Consensus size: 94
70194738 TTAGGATTCT
* * *
70194748 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
70194812 GTGTATATATGTGATAAGGCCTAATGGCCG
65 GTGTATATATGTGATAAGGCCTAATGGCCG
*
70194842 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
70194907 AGTGTATATATATGTGATAAGGCCTAATGGCCG
64 AGTG--TATATATGTGATAAGGCCTAATGGCCG
* * *
70194940 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
*
70195005 TGTATAAATGTGATAAG
66 TGTATATATGTGATAAG
70195022 TCCCGAAGGG
Statistics
Matches: 166, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
93 1 0.01
94 31 0.19
96 87 0.52
98 47 0.28
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:70194887 original size:49 final size:49
Alignment explanation
Indices: 70194769--70195021 Score: 410
Period size: 49 Copynumber: 5.3 Consensus size: 49
70194759 GTGAACATGC
* *
70194769 ATATATGAGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
70194816 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
70194865 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
70194914 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * *
70194961 ATATATGTGATAAGGCCTAATAGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
70195010 A-A-ATGTGATAAG
1 ATATATGTGATAAG
70195022 TCCCGAAGGG
Statistics
Matches: 196, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
47 97 0.49
48 1 0.01
49 98 0.50
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:70195196 original size:37 final size:37
Alignment explanation
Indices: 70195140--70195218 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
70195130 CCGAGCTCTA
* * *
70195140 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGCT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGCT
* * *
70195177 AAGATCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGCT
70195214 AAGAC
1 AAGAC
70195219 TTCGTAATAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGCT
Found at i:70199835 original size:29 final size:29
Alignment explanation
Indices: 70199765--70199854 Score: 103
Period size: 29 Copynumber: 3.1 Consensus size: 29
70199755 AAAGCATGAC
* *
70199765 TATGAATATCATTTGGGTCTAATGGGCCA
1 TATGAATATGATTTGGGCCTAATGGGCCA
* *
70199794 TACGAATATGATTTGGGCCTAATGGGCTA
1 TATGAATATGATTTGGGCCTAATGGGCCA
* *
70199823 TATGAATGA-GA-TTGGGCTTAGTGGGCCA
1 TATGAAT-ATGATTTGGGCCTAATGGGCCA
70199851 TATG
1 TATG
70199855 CATGTATGTA
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
28 18 0.35
29 33 0.63
30 1 0.02
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.32
Consensus pattern (29 bp):
TATGAATATGATTTGGGCCTAATGGGCCA
Found at i:70207656 original size:28 final size:29
Alignment explanation
Indices: 70207575--70207668 Score: 136
Period size: 29 Copynumber: 3.3 Consensus size: 29
70207565 AAAGCATGAC
*
70207575 ATGAATGTGATTTGGGCCTAATGGACCAT
1 ATGAATGTGATTTGGGCCTAATGGGCCAT
* *
70207604 ACGAATATGATTTGGGCCTAATGGGCCAT
1 ATGAATGTGATTTGGGCCTAATGGGCCAT
*
70207633 ATGAATGTGA-TTGGGCCTAGTGGGCCAT
1 ATGAATGTGATTTGGGCCTAATGGGCCAT
*
70207661 ATGCATGT
1 ATGAATGT
70207669 ATATAGACTT
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 24 0.41
29 34 0.59
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.30
Consensus pattern (29 bp):
ATGAATGTGATTTGGGCCTAATGGGCCAT
Found at i:70209444 original size:41 final size:41
Alignment explanation
Indices: 70209387--70209532 Score: 195
Period size: 41 Copynumber: 3.6 Consensus size: 41
70209377 GTTTTAAATT
* *
70209387 CGAGCTTTGTCTCGAAGGGCTTTTGAGCCGGTGTCATAATC
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
70209428 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAA-C
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
* * * * * * * *
70209468 CGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCATAATC
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
70209509 CGAGCTTGGTCTCGAAGGGCTTTT
1 CGAGCTTGGTCTCGAAGGGCTTTT
70209533 TGAGTCAGCG
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 32 0.36
41 56 0.64
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (41 bp):
CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
Found at i:70210675 original size:46 final size:46
Alignment explanation
Indices: 70210624--70210719 Score: 192
Period size: 46 Copynumber: 2.1 Consensus size: 46
70210614 TTTTATGAGA
70210624 TGTTTTAATTTTTGTGAAACAGGGCCAGAGCGATTTCTGGATCCCC
1 TGTTTTAATTTTTGTGAAACAGGGCCAGAGCGATTTCTGGATCCCC
70210670 TGTTTTAATTTTTGTGAAACAGGGCCAGAGCGATTTCTGGATCCCC
1 TGTTTTAATTTTTGTGAAACAGGGCCAGAGCGATTTCTGGATCCCC
70210716 TGTT
1 TGTT
70210720 ATGATGTTGG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (46 bp):
TGTTTTAATTTTTGTGAAACAGGGCCAGAGCGATTTCTGGATCCCC
Found at i:70217631 original size:40 final size:41
Alignment explanation
Indices: 70217511--70217660 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
70217501 TCGGGGTTTA
*
70217511 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* *
70217552 AATCCGAGCTTGGTCTCGAAGGGCTTTTGATCCAGTGTCAT
1 AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * *
70217593 AA-CCGAACCTAGTTTCGAAGGGCCTTCGAGCCAATGTCAT
1 AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
70217633 AATCCGAGCTTAGTCTCGAAGGGCTTTT
1 AATCCGAGCTTAGTCTCGAAGGGCTTTT
70217661 TGAGTCAGCG
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 32 0.34
41 62 0.66
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:70223220 original size:96 final size:96
Alignment explanation
Indices: 70223045--70223779 Score: 1261
Period size: 96 Copynumber: 7.7 Consensus size: 96
70223035 ATACGTGAAA
*
70223045 GTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
70223108 GCCTAATGGCCGATGTGATGAATGTGAAAGT
66 GCCTAATGGCCGATGTGATGAATGTGAAAGT
70223139 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
70223204 GCCTAATGGCCGATGTGATGAATGTGAAAGT
66 GCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
70223235 GTATATATATGTGATAAGGCCTAATGGCTGATGTGATGGATGTGAAAGTG--TATATATGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
70223298 AGGCCTAATGGCCGATGTGATGAATGTGAAAGT
64 AGGCCTAATGGCCGATGTGATGAATGTGAAAGT
70223331 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
70223396 GCCTAATGGCCGATGTGATGAATGTGAAAGT
66 GCCTAATGGCCGATGTGATGAATGTGAAAGT
*
70223427 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCG--TATATATGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
70223490 AGGCCTAATGGCCGATGTGATGAATGTGAAAGT
64 AGGCCTAATGGCCGATGTGATGAATGTGAAAGT
70223523 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
70223588 AGGCCTAATGGCCGATGTGATGAATGTGAAAGT
64 AGGCCTAATGGCCGATGTGATGAATGTGAAAGT
70223621 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
70223686 GCCTAATGGCCGATGTGATGAATGTGAAAGT
66 GCCTAATGGCCGATGTGATGAATGTGAAAGT
* * * * * * *
70223717 GTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
70223780 TCCCGAAGGG
Statistics
Matches: 617, Mismatches: 14, Indels: 20
0.95 0.02 0.03
Matches are distributed among these distances:
94 102 0.17
95 1 0.00
96 376 0.61
98 138 0.22
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
GCCTAATGGCCGATGTGATGAATGTGAAAGT
Found at i:70223282 original size:145 final size:143
Alignment explanation
Indices: 70223045--70223779 Score: 1294
Period size: 145 Copynumber: 5.1 Consensus size: 143
70223035 ATACGTGAAA
*
70223045 GTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
70223108 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
66 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
70223173 TGAATGTGAAAGT
131 TGAATGTGAAAGT
70223186 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
* *
70223251 AGGCCTAATGGCTGATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
64 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
70223316 GATGAATGTGAAAGT
129 GATGAATGTGAAAGT
70223331 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
70223396 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
66 GCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
*
70223461 GATGAATGTGAAAGC
129 GATGAATGTGAAAGT
70223476 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
70223541 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
66 GCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
70223606 GATGAATGTGAAAGT
129 GATGAATGTGAAAGT
70223621 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
* * * * * *
70223686 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGA
66 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
*
70223751 TGGATGTGAAAGT
131 TGAATGTGAAAGT
*
70223764 GTATAAATGTGATAAG
1 GTATATATGTGATAAG
70223780 TCCCGAAGGG
Statistics
Matches: 573, Mismatches: 15, Indels: 10
0.96 0.03 0.02
Matches are distributed among these distances:
141 1 0.00
143 194 0.34
145 378 0.66
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (143 bp):
GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
TGAATGTGAAAGT
Found at i:70234255 original size:33 final size:33
Alignment explanation
Indices: 70234218--70234280 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
70234208 AAAGAAAGAT
70234218 AGAATAAAGAGAAATTTAATCCTCTCCCTTGAC
1 AGAATAAAGAGAAATTTAATCCTCTCCCTTGAC
70234251 AGAATAAAGAGAAATTTAATCCTCTCCCTT
1 AGAATAAAGAGAAATTTAATCCTCTCCCTT
70234281 AGTAAGATGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.29
Consensus pattern (33 bp):
AGAATAAAGAGAAATTTAATCCTCTCCCTTGAC
Found at i:70237893 original size:27 final size:27
Alignment explanation
Indices: 70237863--70238040 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
70237853 ATATTGAGCC
* * *
70237863 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
70237890 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
70237917 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
70237945 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
70237972 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
70237999 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
70238026 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70238041 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:70237956 original size:55 final size:55
Alignment explanation
Indices: 70237863--70238040 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
70237853 ATATTGAGCC
* * *
70237863 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
70237917 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
70237972 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
70238026 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70238041 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:70238002 original size:82 final size:81
Alignment explanation
Indices: 70237884--70238039 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
70237874 TGCTATACAA
* * *
70237884 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
70237949 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
70237966 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
70238030 CACTTAGTGC
65 CACTTAGTGC
70238040 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70245962 original size:27 final size:27
Alignment explanation
Indices: 70245932--70246109 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
70245922 ATATTGAGCC
* * *
70245932 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
70245959 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
70245986 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
70246014 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
70246041 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
70246068 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
70246095 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70246110 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:70246025 original size:55 final size:55
Alignment explanation
Indices: 70245932--70246109 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
70245922 ATATTGAGCC
* * *
70245932 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
70245986 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
70246041 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
70246095 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70246110 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:70246071 original size:82 final size:81
Alignment explanation
Indices: 70245953--70246108 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
70245943 TGCTATACAA
* * *
70245953 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
70246018 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
70246035 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
70246099 CACTTAGTGC
65 CACTTAGTGC
70246109 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70248747 original size:43 final size:44
Alignment explanation
Indices: 70248613--70248763 Score: 164
Period size: 43 Copynumber: 3.5 Consensus size: 44
70248603 AAAACACTAC
* * * * ** *
70248613 AAAAGCCATGACTTTTAGCGGCGTCTGTT-AAAAAAGCGTTGCT
1 AAAAGTCATGGCTTTTAGCGGCATTTGTTGGGAAAAGCGTCGCT
* *
70248656 AAAAGCCATGGCTTTTAGTGGCATTTGTTGGGAAAA-CGTCGCT
1 AAAAGTCATGGCTTTTAGCGGCATTTGTTGGGAAAAGCGTCGCT
*
70248699 AAAAGTCATGGCTTTTAGCGGCATTTG-TGGGAAAAGCGCCGCT
1 AAAAGTCATGGCTTTTAGCGGCATTTGTTGGGAAAAGCGTCGCT
* **
70248742 AAAAGTCGTTACTTTTAGCGGC
1 AAAAGTCATGGCTTTTAGCGGC
70248764 GCTTTTCCCA
Statistics
Matches: 93, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
42 8 0.09
43 81 0.87
44 4 0.04
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (44 bp):
AAAAGTCATGGCTTTTAGCGGCATTTGTTGGGAAAAGCGTCGCT
Found at i:70248875 original size:31 final size:31
Alignment explanation
Indices: 70248840--70248921 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 31
70248830 CTTCTTGCAT
* *
70248840 TAAAATCCAACCAAATACAACAAATATAGTA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
* * * *
70248871 TAAAATGCAGCCAAAAATAACAAATTTAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
* *
70248902 TAAAAATACAACGAAAAACA
1 T-AAAATCCAACCAAAAACA
70248922 TTAATTCTAA
Statistics
Matches: 40, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
31 26 0.65
32 14 0.35
ACGTcount: A:0.60, C:0.17, G:0.06, T:0.17
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAGCA
Found at i:70254718 original size:9 final size:9
Alignment explanation
Indices: 70254704--70254841 Score: 74
Period size: 9 Copynumber: 15.3 Consensus size: 9
70254694 TAACTCTAAT
70254704 TAAGTTATG
1 TAAGTTATG
*
70254713 TAAGTTTTG
1 TAAGTTATG
* * *
70254722 ATATGATATA
1 -TAAGTTATG
*
70254732 T-ATTTATG
1 TAAGTTATG
70254740 T-A-TTATG
1 TAAGTTATG
70254747 TAAGTTATG
1 TAAGTTATG
*
70254756 TAAATTATG
1 TAAGTTATG
70254765 TAAGTTATCCG
1 TAAGTTAT--G
70254776 -AA-TTATG
1 TAAGTTATG
*
70254783 TAAATTATG
1 TAAGTTATG
*
70254792 TAAGATATGATA
1 TAAG-T-T-ATG
*
70254804 TATATTTATG
1 TA-AGTTATG
70254814 T-A-TTATG
1 TAAGTTATG
70254821 TAAGTTATG
1 TAAGTTATG
*
70254830 TAAATTATG
1 TAAGTTATG
70254839 TAA
1 TAA
70254842 AATATGATAT
Statistics
Matches: 100, Mismatches: 16, Indels: 26
0.70 0.11 0.18
Matches are distributed among these distances:
7 13 0.13
8 10 0.10
9 57 0.57
10 11 0.11
11 3 0.03
12 5 0.05
13 1 0.01
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:70254764 original size:18 final size:18
Alignment explanation
Indices: 70254741--70254841 Score: 98
Period size: 18 Copynumber: 5.5 Consensus size: 18
70254731 ATATTTATGT
70254741 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
***
70254759 ATTATGTAAGTTATCCGA
1 ATTATGTAAGTTATGTAA
*
70254777 ATTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
* *
70254795 GATATGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
70254815 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
70254833 ATTATGTAA
1 ATTATGTAA
70254842 AATATGATAT
Statistics
Matches: 66, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
16 7 0.11
17 4 0.06
18 39 0.59
19 4 0.06
20 1 0.02
21 4 0.06
22 7 0.11
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.45
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:70254842 original size:9 final size:9
Alignment explanation
Indices: 70254741--70254847 Score: 85
Period size: 9 Copynumber: 11.7 Consensus size: 9
70254731 ATATTTATGT
70254741 ATTATGTAA
1 ATTATGTAA
*
70254750 GTTATGTAA
1 ATTATGTAA
70254759 ATTATGTAA
1 ATTATGTAA
* ***
70254768 GTTATCCGA
1 ATTATGTAA
70254777 ATTATGTAA
1 ATTATGTAA
70254786 ATTATGTAA
1 ATTATGTAA
70254795 GA-TATGATATA
1 -ATTATG-TA-A
70254806 TATTTATGT--
1 -A-TTATGTAA
70254815 ATTATGTAA
1 ATTATGTAA
*
70254824 GTTATGTAA
1 ATTATGTAA
70254833 ATTATGTAA
1 ATTATGTAA
*
70254842 AATATG
1 ATTATG
70254848 ATATATATTT
Statistics
Matches: 77, Mismatches: 14, Indels: 14
0.73 0.13 0.13
Matches are distributed among these distances:
7 6 0.08
8 1 0.01
9 60 0.78
10 3 0.04
11 2 0.03
12 1 0.01
13 4 0.05
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (9 bp):
ATTATGTAA
Found at i:70255237 original size:5 final size:5
Alignment explanation
Indices: 70255227--70255256 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
70255217 TTTTCTTGAT
70255227 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
70255257 CTTTAAATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:70255336 original size:5 final size:5
Alignment explanation
Indices: 70255326--70255350 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
70255316 TTTTCCTGAT
70255326 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
70255351 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:70255349 original size:194 final size:189
Alignment explanation
Indices: 70255026--70255497 Score: 812
Period size: 194 Copynumber: 2.5 Consensus size: 189
70255016 ATTTAATTAG
*
70255026 GTTTTTTCGTGATTAAAATAAAATAAAATAAAAT-AAACTTTAAATACAATTTAATTTAATTAGG
1 GTTTTTTCTTGA-TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
70255090 TAATTTAAAAATAAAATAAAAGTAGACAAGTTTTTTCCTGATTAAAATAAAATAAAATAAAAT-A
65 TAATTTAAAAATAAAATAAAAGTAGACAAGTTTTTTCCTGATTAAAATAAAATAAAATAAAATAA
70255154 AACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAATTTGACAAAA
130 AACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAATTTGACAAAA
70255214 GTTTTTTCTTGATTAAAATAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAA
1 GTTTTTTCTTG------ATAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAA
*
70255279 TTAGGTAATTTAAAAATAAAATAAAAGTATACAAGTTTTTTCCTGATTAAAATAAAATAAAATAA
60 TTAGGTAATTTAAAAATAAAATAAAAGTAGACAAGTTTTTTCCTGATTAAAATAAAATAAAATAA
*
70255344 AATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAATTTTGACAAAA
125 AATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAATTTGACAAAA
70255409 GTTTTTTCTTGAT----TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
1 GTTTTTTCTTGATAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
70255470 AATTTAAAAATAAAATAAAAGTAGACAA
66 AATTTAAAAATAAAATAAAAGTAGACAA
70255498 AATATTTTAA
Statistics
Matches: 272, Mismatches: 4, Indels: 19
0.92 0.01 0.06
Matches are distributed among these distances:
185 75 0.28
188 10 0.04
189 2 0.01
193 21 0.08
194 93 0.34
195 71 0.26
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.36
Consensus pattern (189 bp):
GTTTTTTCTTGATAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT
AATTTAAAAATAAAATAAAAGTAGACAAGTTTTTTCCTGATTAAAATAAAATAAAATAAAATAAA
ACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAATTTGACAAAA
Found at i:70255480 original size:43 final size:43
Alignment explanation
Indices: 70255342--70255484 Score: 117
Period size: 43 Copynumber: 3.2 Consensus size: 43
70255332 AAAATAAAAT
70255342 AAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
1 AAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
* ** * * ** * ** **
70255385 AAAATAAAATAAATTTTGACAAAAGTTTTTTCTTGATTAAAATAAAAT-
1 AAAAT--AA-AACTTTAAATACAA-TTTAAT-TTAATT-AGGTAATTTA
70255433 AAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
1 AAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
70255476 AAAATAAAA
1 AAAATAAAA
70255485 TAAAAGTAGA
Statistics
Matches: 69, Mismatches: 24, Indels: 14
0.64 0.22 0.13
Matches are distributed among these distances:
42 5 0.07
43 19 0.28
44 4 0.06
45 11 0.16
46 11 0.16
47 4 0.06
48 10 0.14
49 5 0.07
ACGTcount: A:0.54, C:0.04, G:0.05, T:0.37
Consensus pattern (43 bp):
AAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
Found at i:70255764 original size:24 final size:23
Alignment explanation
Indices: 70255722--70255766 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
70255712 AACTTAAATG
* *
70255722 ATAAAAGAATGATAATATTTTTT
1 ATAAAAGAACGAGAATATTTTTT
70255745 ATAAAACGAACGAGAATATTTT
1 ATAAAA-GAACGAGAATATTTT
70255767 AATAATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.36
Consensus pattern (23 bp):
ATAAAAGAACGAGAATATTTTTT
Found at i:70255766 original size:23 final size:23
Alignment explanation
Indices: 70255722--70255771 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
70255712 AACTTAAATG
* * *
70255722 ATAAAAGAATGATAATATTTTTT
1 ATAAAAGAACGAGAATATTTTTA
70255745 ATAAAACGAACGAGAATA-TTTTA
1 ATAAAA-GAACGAGAATATTTTTA
70255768 ATAA
1 ATAA
70255772 TATTTAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.34
Consensus pattern (23 bp):
ATAAAAGAACGAGAATATTTTTA
Found at i:70256318 original size:8 final size:8
Alignment explanation
Indices: 70256301--70256355 Score: 58
Period size: 8 Copynumber: 7.0 Consensus size: 8
70256291 CAAAAAATTC
*
70256301 CACTAATA
1 CACTATTA
70256309 CACTATTA
1 CACTATTA
70256317 CACTA-TA
1 CACTATTA
* *
70256324 CGCAATTA
1 CACTATTA
*
70256332 CACTATTC
1 CACTATTA
*
70256340 CACTATTC
1 CACTATTA
70256348 CACTATTA
1 CACTATTA
70256356 TCATAATCAC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
7 5 0.13
8 34 0.87
ACGTcount: A:0.36, C:0.29, G:0.02, T:0.33
Consensus pattern (8 bp):
CACTATTA
Found at i:70259674 original size:158 final size:156
Alignment explanation
Indices: 70259304--70259685 Score: 389
Period size: 158 Copynumber: 2.4 Consensus size: 156
70259294 ATCTCCAAAC
* * *
70259304 AAAACAACGCCGTTTT-TGTTAAGCACT-AA-TGTTTTTTGCGGCGTTTATTTAAAAAACGCCGC
1 AAAACGACGCCGTTTTCT-TTAA--ACTAAACTGTTTTTTGTGGCGTTT-TTTAAAAAACACCGC
**
70259366 TAATCCCTATATATTCAACTAAAACAACAACATGTACAGTAAACTTTACTTATTTTGCGGCGTTT
62 TAATCCCTATATATTCAACTAAAACAACAACATGTACAGTAAACTTTACTTATGCTGCGGCGTTT
* *
70259431 CTAAAAGCGCCACTAATACCCTCATATACT
127 CTAAAAGCGCCACTAATACCCTCATACACA
* * * *
70259461 AAAACGGCGCCGTTTTCTTTAAACTAAACTGTCTTTTGTGGCGTTTTCTATAAAAATACCGCTAA
1 AAAACGACGCCGTTTTCTTTAAACTAAACTGTTTTTTGTGGCGTTTTTTA-AAAAACACCGCTAA
* ** * * * * *
70259526 TCCCCTATATATTCAACTAAAACGATGACGCT-TCCAGTACACTTTACTTCTGCTGCGGCGTTTT
65 T-CCCTATATATTCAACTAAAACAACAAC-ATGTACAGTAAACTTTACTTATGCTGCGGCGTTTC
* *
70259590 TCAAAA-CGCCACTAATACTCT-ATCCCACA
128 T-AAAAGCGCCACTAATACCCTCAT-ACACA
* * * * * *
70259619 AAAACGACGCCGTTTTCTTTCAACTATACTATTTTTTTGTGGCATTTTTTAAAAAACGCCACTAA
1 AAAACGACGCCGTTTTCTTTAAACTAAACT-GTTTTTTGTGGCGTTTTTTAAAAAACACCGCTAA
70259684 TC
65 TC
70259686 TCTTAATATT
Statistics
Matches: 185, Mismatches: 31, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
155 3 0.02
156 5 0.03
157 49 0.26
158 107 0.58
159 21 0.11
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.34
Consensus pattern (156 bp):
AAAACGACGCCGTTTTCTTTAAACTAAACTGTTTTTTGTGGCGTTTTTTAAAAAACACCGCTAAT
CCCTATATATTCAACTAAAACAACAACATGTACAGTAAACTTTACTTATGCTGCGGCGTTTCTAA
AAGCGCCACTAATACCCTCATACACA
Found at i:70260609 original size:14 final size:14
Alignment explanation
Indices: 70260589--70260633 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
70260579 TCCTACACCT
70260589 TAAACCCTAAACCA
1 TAAACCCTAAACCA
* *
70260603 TATACCCTAAATCA
1 TAAACCCTAAACCA
*
70260617 TAAACCCTAAACTA
1 TAAACCCTAAACCA
70260631 TAA
1 TAA
70260634 TGATAATTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:70260939 original size:40 final size:41
Alignment explanation
Indices: 70260895--70260990 Score: 117
Period size: 41 Copynumber: 2.4 Consensus size: 41
70260885 CGCGCTTGCT
* *
70260895 AAAAACGCCTCTA-ATA-CTGA-CTTGTAGCGGCGTTTTTTTG
1 AAAAACGCCTCTATAGATC-GATCTT-TAGCGGCGCTTTTTTG
*
70260935 AAAAACGCCTCTATAGATCGATCTTTTGCGGCGCTTTTTTG
1 AAAAACGCCTCTATAGATCGATCTTTAGCGGCGCTTTTTTG
*
70260976 AAAAACGCCGCTATA
1 AAAAACGCCTCTATA
70260991 AGTCAGTATT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
40 13 0.27
41 32 0.65
42 4 0.08
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (41 bp):
AAAAACGCCTCTATAGATCGATCTTTAGCGGCGCTTTTTTG
Found at i:70261249 original size:40 final size:40
Alignment explanation
Indices: 70261172--70261246 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 40
70261162 GTTTCTTTAT
70261172 AAGCGCCGCTAATGCTCGTTTTTTAGTGGCGTTTTTGTGG
1 AAGCGCCGCTAATGCTCGTTTTTTAGTGGCGTTTTTGTGG
*
70261212 AAGCGCCGCTAATGCTC-TTTTTTAGTGGTGTTTTT
1 AAGCGCCGCTAATGCTCGTTTTTTAGTGGCGTTTTT
70261247 TGTTAAAACA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
39 17 0.50
40 17 0.50
ACGTcount: A:0.13, C:0.17, G:0.27, T:0.43
Consensus pattern (40 bp):
AAGCGCCGCTAATGCTCGTTTTTTAGTGGCGTTTTTGTGG
Found at i:70265136 original size:41 final size:41
Alignment explanation
Indices: 70265091--70265172 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
70265081 AAATATTTGA
* *
70265091 TATAATTTATGAGTATTTTATATTTAAAATTTATTTAATTT
1 TATAATTGATGAATATTTTATATTTAAAATTTATTTAATTT
*
70265132 TATAATTGATGAATATTTTATATTTAAGATTTATTTAATTT
1 TATAATTGATGAATATTTTATATTTAAAATTTATTTAATTT
70265173 CATTATTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (41 bp):
TATAATTGATGAATATTTTATATTTAAAATTTATTTAATTT
Found at i:70265188 original size:41 final size:41
Alignment explanation
Indices: 70265104--70265191 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
70265094 AATTTATGAG
* *
70265104 TATTTTATATTTAAAATTTATTTAATTTTATAATTGATGAA
1 TATTTTATATTTAAAATTTATTTAATTTCATAATTGATAAA
* * **
70265145 TATTTTATATTTAAGATTTATTTAATTTCATTATTTTTAAA
1 TATTTTATATTTAAAATTTATTTAATTTCATAATTGATAAA
70265186 TATTTT
1 TATTTT
70265192 CTATATACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.60
Consensus pattern (41 bp):
TATTTTATATTTAAAATTTATTTAATTTCATAATTGATAAA
Found at i:70267135 original size:21 final size:19
Alignment explanation
Indices: 70267103--70267141 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
70267093 ATAATTCTTG
70267103 ATATTTATTTAAAATATAT
1 ATATTTATTTAAAATATAT
*
70267122 ATATGTTAGTTTAATATATA
1 ATAT-TTA-TTTAAAATATA
70267142 AAAAAACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 3 0.18
21 10 0.59
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
ATATTTATTTAAAATATAT
Found at i:70269175 original size:21 final size:21
Alignment explanation
Indices: 70269143--70269183 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
70269133 ACAATGTTAC
70269143 AAAACTTTTGGTGTAAGAAAG
1 AAAACTTTTGGTGTAAGAAAG
70269164 AAAA-TTTGTGGTGTAAGAAA
1 AAAACTTT-TGGTGTAAGAAA
70269184 ACGAAATTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.44, C:0.02, G:0.24, T:0.29
Consensus pattern (21 bp):
AAAACTTTTGGTGTAAGAAAG
Found at i:70269527 original size:32 final size:32
Alignment explanation
Indices: 70269452--70269528 Score: 93
Period size: 32 Copynumber: 2.3 Consensus size: 32
70269442 AACGAACAAA
*
70269452 ATATTTAAATATAAATATAAATAAACAATCATTT
1 ATATTTAAA-ATAAATATAAAT-AACAATAATTT
* *
70269486 ATATATAAAATAAACTATAAAT-AGAATAATTT
1 ATATTTAAAATAAA-TATAAATAACAATAATTT
70269518 ATATTTAAAAT
1 ATATTTAAAAT
70269529 TTCAAATACG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
32 18 0.47
33 5 0.13
34 15 0.39
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.38
Consensus pattern (32 bp):
ATATTTAAAATAAATATAAATAACAATAATTT
Found at i:70279153 original size:285 final size:285
Alignment explanation
Indices: 70278643--70279217 Score: 918
Period size: 285 Copynumber: 2.0 Consensus size: 285
70278633 ACTCCATAAG
* * * *
70278643 CTCCTTCAGTGCCATTCTATAAGGGGCGATAGACATCGGAGCTCTGCTAGGCAGGAGCTCAATCC
1 CTCCTTCAGTGCCATTCTATAAGGGGCGATAGACATCGGAGCTATACCAGGCAGGAACTCAATCC
* * **
70278708 CAAACTCAACTTCAAGGCTTGGAGGTAACCTAGGCTACTCATCAGGAAAAGTGTCCAAAAAGTCT
66 CAAAATCAACTTCAAGGCTTGGAGGTAACCCAGGCTACTCATCAGGAAAAGCATCCAAAAAGTCT
* * *
70278773 TTAACTGTTCTGATGTCCCTAACAGAAGAAATCTCAGAATCTGAAACATCGATGTAGGCTAGATA
131 TTAACTGTTCTAATGTCCCTAACAGAAGAAATCTCAGAATCTAAAACACCGATGTAGGCTAGATA
* * *
70278838 CACCTCACAACCCTTACGAACCAATTTCTCGGCCTTTAATGCAGATATCACATTTGACAAGTAGT
196 CACCTCACAACCCTCACGAACCAATTTCTCGGCCCTTAATGCAGATATCACATTTGACAAGTAAT
* *
70278903 TTCGACGCTCCCCAATTACAATTAC
261 TCCAACGCTCCCCAATTACAATTAC
* *
70278928 CTCCTTCGGTGCCATTCTATAAGGGGCGATAGACATCGGAGCTATACCAGGCAGGAATTCAATCC
1 CTCCTTCAGTGCCATTCTATAAGGGGCGATAGACATCGGAGCTATACCAGGCAGGAACTCAATCC
* * *
70278993 CAAAATCAACTTCACGGCTTGGAGGTAACCCAGGC-AGCTCATCAGGAAAAGCATTCAGAAAGTC
66 CAAAATCAACTTCAAGGCTTGGAGGTAACCCAGGCTA-CTCATCAGGAAAAGCATCCAAAAAGTC
* *
70279057 TTTAACTGTTCTAATGTCCCTAACAGAAGAAATCTTAGAATCTAAAACACCGATGTGGGCTAGAT
130 TTTAACTGTTCTAATGTCCCTAACAGAAGAAATCTCAGAATCTAAAACACCGATGTAGGCTAGAT
*
70279122 ACGCCTCACAACCCTCACGAACCAATTTCTCGGCCCTTAATGCAGATATCACATTTGACAAGTAA
195 ACACCTCACAACCCTCACGAACCAATTTCTCGGCCCTTAATGCAGATATCACATTTGACAAGTAA
70279187 TTCCAACGCTCCCCAATTACAATTAC
260 TTCCAACGCTCCCCAATTACAATTAC
70279213 CTCCT
1 CTCCT
70279218 CATCCTCCGC
Statistics
Matches: 265, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
284 1 0.00
285 264 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (285 bp):
CTCCTTCAGTGCCATTCTATAAGGGGCGATAGACATCGGAGCTATACCAGGCAGGAACTCAATCC
CAAAATCAACTTCAAGGCTTGGAGGTAACCCAGGCTACTCATCAGGAAAAGCATCCAAAAAGTCT
TTAACTGTTCTAATGTCCCTAACAGAAGAAATCTCAGAATCTAAAACACCGATGTAGGCTAGATA
CACCTCACAACCCTCACGAACCAATTTCTCGGCCCTTAATGCAGATATCACATTTGACAAGTAAT
TCCAACGCTCCCCAATTACAATTAC
Found at i:70281233 original size:31 final size:31
Alignment explanation
Indices: 70281173--70281267 Score: 154
Period size: 31 Copynumber: 3.0 Consensus size: 31
70281163 CCCATCACAG
*
70281173 TATCAATTGGGCCTAGCCCATCTCAAAATCAA
1 TATCAGTTGGGCCTAGCCCAT-TCAAAATCAA
70281205 TATCAGTTGGGCCTAGCCCATTCAAAATCAA
1 TATCAGTTGGGCCTAGCCCATTCAAAATCAA
*
70281236 TATCAGTTGGGCCTAGCCCATTTCAATATCAA
1 TATCAGTTGGGCCTAGCCCA-TTCAAAATCAA
70281268 ACCTATATGA
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 30 0.50
32 30 0.50
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (31 bp):
TATCAGTTGGGCCTAGCCCATTCAAAATCAA
Found at i:70285369 original size:27 final size:27
Alignment explanation
Indices: 70285339--70285392 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
70285329 ATATACATCT
*
70285339 CATAAGGGTATAA-TAGTCATTTTAGCA
1 CATAAGGGCATAACT-GTCATTTTAGCA
*
70285366 CATAAGGGCATAACTGTTATTTTAGCA
1 CATAAGGGCATAACTGTCATTTTAGCA
70285393 ATTTTGGGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (27 bp):
CATAAGGGCATAACTGTCATTTTAGCA
Found at i:70287359 original size:27 final size:27
Alignment explanation
Indices: 70287328--70287422 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 27
70287318 ACAGAAATTG
70287328 AAGCCTTTGTGGCAATCTATGAAATGA
1 AAGCCTTTGTGGCAATCTATGAAATGA
* * * *
70287355 AAGCCTTTGTGTCAATCCAAGAAATGG
1 AAGCCTTTGTGGCAATCTATGAAATGA
* * * *
70287382 AAGCATTTGTAGCGATCTATGGAAAGGA
1 AAGCCTTTGTGGCAATCTAT-GAAATGA
* *
70287410 ACGCCTTCGTGGC
1 AAGCCTTTGTGGC
70287423 GCATTCTAAA
Statistics
Matches: 51, Mismatches: 16, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
27 37 0.73
28 14 0.27
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (27 bp):
AAGCCTTTGTGGCAATCTATGAAATGA
Found at i:70289342 original size:31 final size:31
Alignment explanation
Indices: 70289307--70289430 Score: 81
Period size: 31 Copynumber: 3.9 Consensus size: 31
70289297 AGACTCTTTT
**
70289307 TGTGTTTATTGTCCTAGTGGACTATCTCTCC
1 TGTGTTTATTGTCCTAGTAAACTATCTCTCC
*
70289338 TGTGTTTACTAT-TCC-AGTAAACTATCTATCC
1 TGTGTTTA-T-TGTCCTAGTAAACTATCTCTCC
* * * ** *
70289369 TATGTTTACTGTCCCAACAAACTATCTCTATTC
1 TGTGTTTATTGTCCTAGTAAACTATCTC--TCC
* * **
70289402 TGTGTTTATTATCTTAGTGGACTATCTCT
1 TGTGTTTATTGTCCTAGTAAACTATCTCT
70289431 GTAGATGCCA
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
29 1 0.01
30 3 0.04
31 39 0.57
32 4 0.06
33 22 0.32
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (31 bp):
TGTGTTTATTGTCCTAGTAAACTATCTCTCC
Found at i:70289408 original size:33 final size:31
Alignment explanation
Indices: 70289327--70289414 Score: 86
Period size: 31 Copynumber: 2.8 Consensus size: 31
70289317 GTCCTAGTGG
* * **
70289327 ACTATCTCTCCTGTGTTTACTATTCCAGTAA
1 ACTATCTATCCTGTGTTTACTATCCCAACAA
* *
70289358 ACTATCTATCCTATGTTTACTGTCCCAACAA
1 ACTATCTATCCTGTGTTTACTATCCCAACAA
* *
70289389 ACTATCTCTATTCTGTGTTTATTATC
1 ACTA--TCTATCCTGTGTTTACTATC
70289415 TTAGTGGACT
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
31 29 0.64
33 16 0.36
ACGTcount: A:0.24, C:0.25, G:0.08, T:0.43
Consensus pattern (31 bp):
ACTATCTATCCTGTGTTTACTATCCCAACAA
Found at i:70295081 original size:22 final size:22
Alignment explanation
Indices: 70295056--70295099 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
70295046 CACTAATCAC
70295056 AATAAGCTTT-TATTTTACTAGA
1 AATAAG-TTTATATTTTACTAGA
70295078 AATAAGTTTATATTTTACTAGA
1 AATAAGTTTATATTTTACTAGA
70295100 TTATGATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.45
Consensus pattern (22 bp):
AATAAGTTTATATTTTACTAGA
Found at i:70298960 original size:19 final size:19
Alignment explanation
Indices: 70298936--70298973 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
70298926 GACTAATCAA
70298936 CTTGATTCGCCGTTTTAAC
1 CTTGATTCGCCGTTTTAAC
70298955 CTTGATTCGCCGTTTTAAC
1 CTTGATTCGCCGTTTTAAC
70298974 ATTCGAGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (19 bp):
CTTGATTCGCCGTTTTAAC
Found at i:70299134 original size:40 final size:41
Alignment explanation
Indices: 70299087--70299192 Score: 142
Period size: 41 Copynumber: 2.6 Consensus size: 41
70299077 GATTCAGAGA
** *
70299087 TATATATGGCACTTAGTGTGCGATTC-GAGATAGCTTTGGT
1 TATATATGGCACTTAGTGTGCGAGACTGAGATAGCTTCGGT
*
70299127 TATATATGGCACTTAGTGTACGAGACTGAGATAGCTTCGGT
1 TATATATGGCACTTAGTGTGCGAGACTGAGATAGCTTCGGT
* * *
70299168 TATTTATGACAGTTAGTGTGCGAGA
1 TATATATGGCACTTAGTGTGCGAGA
70299193 TTATAATAGC
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 23 0.40
41 34 0.60
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.35
Consensus pattern (41 bp):
TATATATGGCACTTAGTGTGCGAGACTGAGATAGCTTCGGT
Found at i:70299202 original size:41 final size:40
Alignment explanation
Indices: 70299087--70299235 Score: 131
Period size: 41 Copynumber: 3.6 Consensus size: 40
70299077 GATTCAGAGA
* * * *
70299087 TATATATGGCACTTAGTGTGCGA-TTCGAGATAGCTTTGGT
1 TATATATGACACTTAGTGTGCGAGAT-GAAATAGCTTCGGT
* * *
70299127 TATATATGGCACTTAGTGTACGAGACTGAGATAGCTTCGGT
1 TATATATGACACTTAGTGTGCGAGA-TGAAATAGCTTCGGT
* * * *
70299168 TATTTATGACAGTTAGTGTGCGAGATTATAATAGCTTCGGC
1 TATATATGACACTTAGTGTGCGAGATGA-AATAGCTTCGGT
*
70299209 TATGA-ATTGACACTTAGTGTGTGAGAT
1 TAT-ATA-TGACACTTAGTGTGCGAGAT
70299236 ATCGAGTACT
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 24 0.26
41 48 0.53
42 19 0.21
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (40 bp):
TATATATGACACTTAGTGTGCGAGATGAAATAGCTTCGGT
Found at i:70299235 original size:42 final size:41
Alignment explanation
Indices: 70299157--70299235 Score: 104
Period size: 42 Copynumber: 1.9 Consensus size: 41
70299147 CGAGACTGAG
* ** *
70299157 ATAGCTTCGGTTATTTATGACAGTTAGTGTGCGAGATTATA
1 ATAGCTTCGGCTATGAATGACACTTAGTGTGCGAGATTATA
*
70299198 ATAGCTTCGGCTATGAATTGACACTTAGTGTGTGAGAT
1 ATAGCTTCGGCTATGAA-TGACACTTAGTGTGCGAGAT
70299236 ATCGAGTACT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
41 14 0.44
42 18 0.56
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.37
Consensus pattern (41 bp):
ATAGCTTCGGCTATGAATGACACTTAGTGTGCGAGATTATA
Found at i:70310986 original size:28 final size:29
Alignment explanation
Indices: 70310904--70310988 Score: 109
Period size: 29 Copynumber: 3.0 Consensus size: 29
70310894 GCATGACTAT
*
70310904 GAATGTGATTTGGGCCTATTGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* *
70310933 GAATGTGATTTGGGCCTAATGAGCCATAG
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* * *
70310962 GAATGAGA-TTGGGTCTAGTGGGCCATA
1 GAATGTGATTTGGGCCTAATGGGCCATA
70310989 TGCGTTTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 16 0.33
29 33 0.67
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.28
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:70324159 original size:13 final size:13
Alignment explanation
Indices: 70324141--70324165 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70324131 TGTGGGTGCA
70324141 CACAGTCGTGTCG
1 CACAGTCGTGTCG
70324154 CACAGTCGTGTC
1 CACAGTCGTGTC
70324166 TGTCTTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.28, T:0.24
Consensus pattern (13 bp):
CACAGTCGTGTCG
Found at i:70328200 original size:46 final size:46
Alignment explanation
Indices: 70328028--70328200 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
70328018 AACCCGCCCC
* * * * *
70328028 TAAGTGAACTCGGACTCAACTCAATGAGATCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
70328074 TAAATGAACTCTGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
70328122 TCA-CGAAGTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
70328167 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70328201 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 55 0.55
47 27 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:70335598 original size:46 final size:46
Alignment explanation
Indices: 70335430--70335599 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
70335420 AACCCGCCCC
* * * *
70335430 TAAGTGAACTCGGACTCAACTCACCGAGCTCTGGC-TTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTT-ACATCCA
* * * *
70335476 TAAATGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAG-TT-CA-GAC-ATTTACATCCA
* * * *
70335524 TCA-CGAAGTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTACATCCA
70335569 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
70335600 GGATGCTCAA
Statistics
Matches: 99, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 53 0.54
47 23 0.23
48 2 0.02
49 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTACATCCA
Found at i:70336059 original size:30 final size:30
Alignment explanation
Indices: 70336025--70336084 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
70336015 ATTTAATACG
*
70336025 AACTTTGAGAAAATTACACTTTTGCCCCTA
1 AACTTTGACAAAATTACACTTTTGCCCCTA
* *
70336055 AACTTTTACATAATTACACTTTTGCCCCTA
1 AACTTTGACAAAATTACACTTTTGCCCCTA
70336085 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGACAAAATTACACTTTTGCCCCTA
Found at i:70341966 original size:29 final size:30
Alignment explanation
Indices: 70341929--70341987 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 30
70341919 CTATAGAATT
*
70341929 TTTGTTTGGGCCAATTAGTACAG-TTATTA
1 TTTGGTTGGGCCAATTAGTACAGTTTATTA
70341958 TTTGGTTGGGCCAATTAGTACAGTTTATTA
1 TTTGGTTGGGCCAATTAGTACAGTTTATTA
70341988 ATTAAATTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 22 0.79
30 6 0.21
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.44
Consensus pattern (30 bp):
TTTGGTTGGGCCAATTAGTACAGTTTATTA
Found at i:70343207 original size:93 final size:93
Alignment explanation
Indices: 70343048--70343218 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
70343038 GCCCCTAAGT
* * *
70343048 GAACTCGGACTCAACTCAACGAGCTCGGGCTTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACTTTCGCATCCATAAATGAACTCAGACTCAACTCAA
*
70343113 CGAGTTCGGATGCCTAGTTACCTCTCAC
66 CGAGCTCGGATGCCTAGTTACCTCTCAC
* * *
70343141 GAACTCAGACTCAACTCAATGAGTTCGGACATTT-GCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCGGAC-TTTCGCATCCATAAATGAACTCAGACTCAACTCA
70343205 ACGAGCTCGGATGC
65 ACGAGCTCGGATGC
70343219 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 67 0.96
94 3 0.04
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACTTTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACCTCTCAC
Found at i:70343215 original size:46 final size:46
Alignment explanation
Indices: 70343043--70343215 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
70343033 AACCCGCCCC
* *
70343043 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTT-GCATCCA
* * * * * *
70343089 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACCT-C-
1 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGA---C-ATTTGCATCCA
* * * *
70343137 TCA-CGAACTCAGACTCAACTCAATGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCATCCA
70343182 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
1 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
70343216 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 17, Indels: 16
0.76 0.13 0.12
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 58 0.57
47 27 0.26
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:70364945 original size:39 final size:39
Alignment explanation
Indices: 70364835--70364949 Score: 149
Period size: 39 Copynumber: 2.9 Consensus size: 39
70364825 GAGGTTTCAG
* * * * *
70364835 TTTAGCACTCATGTGCTTCAATTAGCCTCCGGTCTTCCG
1 TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCA
*
70364874 TTTAGCACTTATGTGCTTCAGTTAGCCGTCGGGCTTCCA
1 TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCA
* **
70364913 TTTAGCACTTATGTGCTTCAGCTAGATTTCGGGCTTC
1 TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTC
70364950 AGATCACGAT
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 66 1.00
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (39 bp):
TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCA
Found at i:70366302 original size:54 final size:53
Alignment explanation
Indices: 70366221--70366417 Score: 198
Period size: 54 Copynumber: 3.8 Consensus size: 53
70366211 CCATGGCAAC
* * *
70366221 ATGTGATATCTGATTTTCATATAAGACCATAGCTGGGCTATGGCATCAATGTG
1 ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCAATGTG
70366274 ATGTGATCATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCAGA-GAT-
1 ATGTGAT-ATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCA-ATG-TG
* * * *
70366328 ATGTGATTATGTG-CTTCCGTATAAGACCATATCTGGGATATGGAATC-A---G
1 ATGTGA-TATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCAATGTG
* * *
70366377 -TGTGATATGTGA--TCCGTGTAAGACCATGGTTGGGCTATGGC
1 ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGC
70366418 TTCGGTGTGT
Statistics
Matches: 125, Mismatches: 13, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
46 23 0.18
47 6 0.05
48 5 0.04
51 1 0.01
53 37 0.30
54 50 0.40
55 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (53 bp):
ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCAATGTG
Found at i:70369759 original size:39 final size:39
Alignment explanation
Indices: 70369650--70369764 Score: 158
Period size: 39 Copynumber: 2.9 Consensus size: 39
70369640 GGGGTTTCAG
* * * *
70369650 TTTAGCACTTCTGTACTTCAGTTAGCCTCCGGGCTTCCG
1 TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCA
*
70369689 GTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCA
1 TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCA
* **
70369728 TTTAGCACTTATGTGCTTCAGCTAGATTTCGGGCTTC
1 TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTC
70369765 AGATCACGAT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (39 bp):
TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCA
Found at i:70371043 original size:55 final size:53
Alignment explanation
Indices: 70370851--70371095 Score: 175
Period size: 55 Copynumber: 4.6 Consensus size: 53
70370841 CTTACCATTT
* * * * * *
70370851 CCATGACTTGTCATGGTCTTACATGGTATCC-T---TT-TGAAACTTACCATTT
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTCACTAATG
* *
70370900 CCATGTCTCGACATGGTCTTACAAGGTATCCTTGCCTTATGAACTCACTAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACTAATG
* * * *
70370953 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACT-TCTCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G-AACTCACT-AATG
* * * * * *
70371008 CCATGTCTTAACATGGACTTACATGATATCCTTGCCTTA-GAAACCTGACCAATTT
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACTAA-TG
*
70371063 CCAT-TCCTTGGCATGGTCTTACATGGTATCCTT
1 CCATGT-CTTGACATGGTCTTACATGGTATCCTT
70371096 AAACCCTAAT
Statistics
Matches: 154, Mismatches: 28, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
49 27 0.18
50 1 0.01
52 2 0.01
53 45 0.29
54 10 0.06
55 67 0.44
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACTAATG
Found at i:70373837 original size:24 final size:24
Alignment explanation
Indices: 70373789--70373840 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
70373779 CGAATTTGCT
*
70373789 ACACATAGTGCTCGTCACACTCGC
1 ACACATAGTGCTAGTCACACTCGC
70373813 ACACATAGTGCCATAGT-ACAC-CGC
1 ACACATAGTG-C-TAGTCACACTCGC
70373837 ACAC
1 ACAC
70373841 TCAGTGCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 17 0.68
25 5 0.20
26 3 0.12
ACGTcount: A:0.31, C:0.37, G:0.15, T:0.17
Consensus pattern (24 bp):
ACACATAGTGCTAGTCACACTCGC
Found at i:70377280 original size:20 final size:20
Alignment explanation
Indices: 70377247--70377321 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
70377237 ATACGTGGGA
70377247 TATGATAT--ACATGA-ATG
1 TATGATATGCACATGATATG
70377264 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
*
70377285 TATGACATGCACATGATATG
1 TATGATATGCACATGATATG
*
70377305 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
70377322 GAATTCATAA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
18 8 0.15
20 41 0.79
21 3 0.06
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.32
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:70377402 original size:26 final size:26
Alignment explanation
Indices: 70377366--70377502 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
70377356 GAGGAAGTGA
* *
70377366 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
* * *
70377392 AAAAGCGCTTATGCCCCAGTATACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
70377418 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
70377444 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
70377470 AAAAGGGCTT-TGCCCCAG-TTA-TG
1 AAAAGGGCTTATGCCCCAGTTTACTG
70377493 AAAAGAGGCT
1 AAAAG-GGCT
70377503 AGGCCTCCAG
Statistics
Matches: 98, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
23 6 0.06
24 7 0.07
25 8 0.08
26 77 0.79
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:70377443 original size:52 final size:52
Alignment explanation
Indices: 70377366--70377497 Score: 216
Period size: 52 Copynumber: 2.6 Consensus size: 52
70377356 GAGGAAGTGA
*
70377366 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGCGCTTATGCCCCAGTATACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGCGCTTATGCCCCAGTATACCG
* *
70377418 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGCGCTTATGCCCCAGTATACCG
70377470 AAAAGGGCTT-TGCCCCAG-TTA-TGAAAAG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG
70377498 AGGCTAGGCC
Statistics
Matches: 77, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
49 7 0.09
50 3 0.04
51 8 0.10
52 59 0.77
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.26
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGCGCTTATGCCCCAGTATACCG
Found at i:70390263 original size:93 final size:93
Alignment explanation
Indices: 70390150--70390321 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
70390140 CGCCCATAAG
* *
70390150 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70390215 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
70390243 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70390308 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70390322 TCAACATCCT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70390318 original size:46 final size:46
Alignment explanation
Indices: 70390143--70390318 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
70390133 TGTAACCCGC
* * *
70390143 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
70390189 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
70390239 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
70390282 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70390319 TGCTCAACAT
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70394870 original size:16 final size:16
Alignment explanation
Indices: 70394851--70394881 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70394841 CTTCTTCACG
70394851 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
70394867 TACTTACTTACTTAA
1 TACTCACTTACTTAA
70394882 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:70395263 original size:55 final size:53
Alignment explanation
Indices: 70395076--70395327 Score: 162
Period size: 55 Copynumber: 4.8 Consensus size: 53
70395066 CGGGTACCTT
* * * * *
70395076 ACCATTGCCATGACTTGTCATGGTCTTACATGGTATCC-T---TT-TGAAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AACTC
* * * * *
70395125 ACCATTTCCATGTCTCGACATGGTCTTACATGGTATCCTTGTCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC
* * *
70395178 ACCAATGTCATGCCTT-AGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTT
1 ACCAATGCCATGTCTTGA-CATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTC
* * ** *
70395233 ATCAATGCCATGTCTTGACATGGACTTACATGATATCCTTGCCTTA-GAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTC
* * * *
70395287 ACCAATTTCCAT-TCCTTGGCACGGTCTTACATGGTATCCTT
1 ACCAA-TGCCATGT-CTTGACATGGTCTTACATGGGATCCTT
70395328 AAACCCTAAT
Statistics
Matches: 163, Mismatches: 26, Indels: 22
0.77 0.12 0.10
Matches are distributed among these distances:
49 34 0.21
50 1 0.01
52 3 0.02
53 44 0.27
54 11 0.07
55 67 0.41
56 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC
Found at i:70397862 original size:45 final size:45
Alignment explanation
Indices: 70397799--70397973 Score: 164
Period size: 45 Copynumber: 3.9 Consensus size: 45
70397789 ATATTTGGGC
70397799 ATCCGAACTCGTTG-GTTGAGTCCGAGTTC-ACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCGACTTATGGATGCGA
*** * *
70397842 ATGTCCGAA-TCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGACTTATG-GA-T-GCGA
*
70397890 ATCCGAACTCGTTGAGTTGAGTCTGAGTTC-ACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCGACTTATGGATGCG-A
* * *
70397935 CACCCGAGCTC-TTGAGTTGAGTCCGAGTTCGCCTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCGACTTATGG
70397974 CGGGTTACAT
Statistics
Matches: 105, Mismatches: 15, Indels: 21
0.74 0.11 0.15
Matches are distributed among these distances:
43 2 0.02
44 8 0.08
45 40 0.38
46 29 0.28
47 22 0.21
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCGACTTATGGATGCGA
Found at i:70397952 original size:92 final size:91
Alignment explanation
Indices: 70397796--70397965 Score: 270
Period size: 92 Copynumber: 1.9 Consensus size: 91
70397786 AGGATATTTG
***
70397796 GGCATCCGAACTCGTTGGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAATCGTTGAGTT
1 GGCATCCGAACTCGTTGGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAATCGTTGAGTT
70397861 GAGTCCGAGTTCGAGAGATGTAACTA
66 GAGTCCGAGTTCGAGAGATGTAACTA
* *
70397887 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACACCCGAGCTC-TTGAG
1 GGCATCCGAACTCGTTG-GTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGA-ATCGTTGAG
70397951 TTGAGTCCGAGTTCG
64 TTGAGTCCGAGTTCG
70397966 CCTTATGGCG
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
91 17 0.24
92 53 0.74
93 2 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (91 bp):
GGCATCCGAACTCGTTGGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAATCGTTGAGTT
GAGTCCGAGTTCGAGAGATGTAACTA
Found at i:70400011 original size:15 final size:15
Alignment explanation
Indices: 70399991--70400068 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
70399981 CATAGTATCG
*
70399991 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTT
* *
70400006 TATCTTGCATCTCTT
1 TATCTTGGATTTCTT
70400021 TAT-TCTGGATTTCTT
1 TATCT-TGGATTTCTT
* *
70400036 TAT-TCTGGGTTTCTC
1 TATCT-TGGATTTCTT
70400051 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
70400066 TAT
1 TAT
70400069 TCGGTTTTCT
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
14 1 0.02
15 50 0.96
16 1 0.02
ACGTcount: A:0.12, C:0.17, G:0.14, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:70402502 original size:46 final size:44
Alignment explanation
Indices: 70402448--70402624 Score: 158
Period size: 46 Copynumber: 3.9 Consensus size: 44
70402438 ATATTTGGGC
*
70402448 ATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * *
70402492 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
* *
70402541 ATCCGAACTCGTTGAGTTGACTCCAAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* * * * *
70402586 CACCCGAGCTCATTGAGTTGAGTCCGACTTCGCTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70402625 GCTGGTCACA
Statistics
Matches: 104, Mismatches: 20, Indels: 16
0.74 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 63 0.61
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:70402604 original size:93 final size:93
Alignment explanation
Indices: 70402445--70402617 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
70402435 AGGATATTTG
* * *** *
70402445 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTAAGTTGACTCCAAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
*
70402510 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGACTTCGAGAGATGTAACTA
* *
70402538 GGCATCCGAACTCGTTGAGTTGACTCCAAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTAAGTTGACTCCAAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
70402603 TTGAGTCCGACTTCG
66 TTGAGTCCGACTTCG
70402618 CTTATGGGCT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTAAGTTGACTCCAAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
TTGAGTCCGACTTCGAGAGATGTAACTA
Found at i:70404516 original size:24 final size:25
Alignment explanation
Indices: 70404476--70404523 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
70404466 AGTTAGTAAT
*
70404476 AAAGAAATGGAGAAAAA-AAAAGAG
1 AAAGAAAAGGAGAAAAACAAAAGAG
70404500 AAAGAAAAGGATG-AAAACAAAAGA
1 AAAGAAAAGGA-GAAAAACAAAAGA
70404524 AAAAAATGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.71, C:0.02, G:0.23, T:0.04
Consensus pattern (25 bp):
AAAGAAAAGGAGAAAAACAAAAGAG
Found at i:70404521 original size:25 final size:24
Alignment explanation
Indices: 70404476--70404523 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
70404466 AGTTAGTAAT
*
70404476 AAAGAAATGGAGAAAAAAAAAGAG
1 AAAGAAAAGGAGAAAAAAAAAGAG
*
70404500 AAAGAAAAGGATGAAAACAAAAGA
1 AAAGAAAAGGA-GAAAAAAAAAGA
70404524 AAAAAATGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.71, C:0.02, G:0.23, T:0.04
Consensus pattern (24 bp):
AAAGAAAAGGAGAAAAAAAAAGAG
Found at i:70405908 original size:79 final size:81
Alignment explanation
Indices: 70405772--70405954 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
70405762 TCGAATGATG
* *
70405772 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
70405836 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
70405851 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
70405913 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
70405931 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70405955 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:70405970 original size:40 final size:40
Alignment explanation
Indices: 70405773--70405956 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
70405763 CGAATGATGT
* * * *
70405773 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
70405813 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
70405853 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70405891 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70405932 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70405957 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70405978 original size:79 final size:79
Alignment explanation
Indices: 70405825--70405989 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
70405815 GGACTAAGAT
* **
70405825 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
70405890 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
70405904 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
70405967 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
70405983 CCGAAGG
1 CCGAAGG
70405990 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:70409947 original size:48 final size:48
Alignment explanation
Indices: 70409879--70410251 Score: 602
Period size: 48 Copynumber: 7.8 Consensus size: 48
70409869 CAAGATAAAT
* * *
70409879 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
*
70409927 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* * * * *
70409975 ATATGTATATGTGGTAAAGCCGAATGACGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* *
70410023 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
70410071 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
*
70410119 ATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* * * *
70410167 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
70410215 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
70410252 TGTTGTAACA
Statistics
Matches: 303, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 303 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
Found at i:70416751 original size:24 final size:23
Alignment explanation
Indices: 70416711--70416765 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
70416701 AGTTAGTAAT
*
70416711 AAAGAAATGGAGAAAAACAAAGAG
1 AAAGAAAAGGAGAAAAACAAA-AG
70416735 AAAGAAAAGGATG-AAAACAAAAG
1 AAAGAAAAGGA-GAAAAACAAAAG
*
70416758 AAAAAAAA
1 AAAGAAAA
70416766 TGTGTCCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 9 0.32
24 18 0.64
25 1 0.04
ACGTcount: A:0.73, C:0.04, G:0.20, T:0.04
Consensus pattern (23 bp):
AAAGAAAAGGAGAAAAACAAAAG
Found at i:70418192 original size:40 final size:39
Alignment explanation
Indices: 70418003--70418185 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
70417993 CGAATGATGT
* * * *
70418003 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
70418043 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
70418083 CC-GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70418120 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
70418161 CCGGGCTATGTCCTGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70418186 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
38 27 0.22
39 13 0.11
40 73 0.59
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70421091 original size:34 final size:33
Alignment explanation
Indices: 70421044--70421117 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 33
70421034 GTTGCATTAC
* *
70421044 TGATACTGTTACTGTAATA-GGCTAAGGCCCACAT
1 TGATACTGCTACTG--ATACGGCTAAGGCCCACAA
70421078 TGATACTGCTACTGATACGGGCTAAGGCCCACAA
1 TGATACTGCTACTGATAC-GGCTAAGGCCCACAA
70421112 TGATAC
1 TGATAC
70421118 CAAACTGTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
32 3 0.08
34 33 0.92
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (33 bp):
TGATACTGCTACTGATACGGCTAAGGCCCACAA
Found at i:70427817 original size:15 final size:15
Alignment explanation
Indices: 70427797--70427861 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
70427787 GTATCTTGGG
70427797 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
70427812 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
70427827 TTTCTCTA-TCTTAGA
1 TTTCTTTATTC-TGGA
*
70427842 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
70427856 TTTCTT
1 TTTCTT
70427862 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
14 9 0.22
15 30 0.73
16 2 0.05
ACGTcount: A:0.11, C:0.15, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:70427827 original size:30 final size:30
Alignment explanation
Indices: 70427793--70427861 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
70427783 GTATGTATCT
*
70427793 TGGGTTTCTTTAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTTATCT-TAGATTTCTTTATTC
*
70427823 TGGGTTTCTCTATCTTAGATTTCTTTATTC
1 TGGGTTTCTTTATCTTAGATTTCTTTATTC
*
70427853 -GGTTTTCTT
1 TGGGTTTCTT
70427862 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.21
30 26 0.76
31 1 0.03
ACGTcount: A:0.10, C:0.14, G:0.16, T:0.59
Consensus pattern (30 bp):
TGGGTTTCTTTATCTTAGATTTCTTTATTC
Found at i:70448469 original size:33 final size:34
Alignment explanation
Indices: 70448415--70448521 Score: 128
Period size: 33 Copynumber: 3.2 Consensus size: 34
70448405 TGCATTACTA
* *
70448415 ATACTGTTACTATAATAGGCTAAGGCCCACATTG
1 ATACTGTTACTGTAATGGGCTAAGGCCCACATTG
70448449 AT-CTGTTACTGTAATGGGCTAAGGCCCACATTG
1 ATACTGTTACTGTAATGGGCTAAGGCCCACATTG
** * * *
70448482 ATACTACTACTGCT-ATGGGTTAAGGCCCACACTC
1 ATACTGTTACTG-TAATGGGCTAAGGCCCACATTG
70448516 ATACTG
1 ATACTG
70448522 GACTGTCACT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
33 31 0.49
34 31 0.49
35 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (34 bp):
ATACTGTTACTGTAATGGGCTAAGGCCCACATTG
Found at i:70449503 original size:40 final size:40
Alignment explanation
Indices: 70449451--70449637 Score: 146
Period size: 40 Copynumber: 4.6 Consensus size: 40
70449441 GTTTGACGAT
* *
70449451 GATTTGGATATATATGGCACTTAGTGTGCGATTC-GAGATG
1 GATTTGGCTATATATGGCACTTAGTGTGCGATTCGGA-ATA
*
70449491 GATTTGGCTATATATGGCACTTAGTGTGCGATTTGGAATA
1 GATTTGGCTATATATGGCACTTAGTGTGCGATTCGGAATA
* * * *** *
70449531 GCTTCGGCTAT-TATGGTACTTAGTGTGCGGGACCGAGATA
1 GATTTGGCTATATATGGCACTTAGTGTGCGATTCGGA-ATA
* * * * * *
70449571 GCTTCGGTTATACATGGCACTTAGTTTGCAAGATT-GTAATA
1 GATTTGGCTATATATGGCACTTAGTGTGC--GATTCGGAATA
* *
70449612 GCTTTGGCTATGTATTGGCACTTAGT
1 GATTTGGCTATATA-TGGCACTTAGT
70449638 ATGTGAGATA
Statistics
Matches: 117, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
39 19 0.16
40 56 0.48
41 29 0.25
42 12 0.10
43 1 0.01
ACGTcount: A:0.23, C:0.13, G:0.28, T:0.36
Consensus pattern (40 bp):
GATTTGGCTATATATGGCACTTAGTGTGCGATTCGGAATA
Found at i:70451477 original size:28 final size:28
Alignment explanation
Indices: 70451432--70451491 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
70451422 ATGCTGTTGA
* *
70451432 ATACTCAATGTCTTGCACACTAAGTGCC
1 ATACTCAATATCTCGCACACTAAGTGCC
* *
70451460 ATACTCGATATCTCGCACACTAAGTGCT
1 ATACTCAATATCTCGCACACTAAGTGCC
70451488 ATAC
1 ATAC
70451492 ATATCTGAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.28
Consensus pattern (28 bp):
ATACTCAATATCTCGCACACTAAGTGCC
Found at i:70451540 original size:40 final size:40
Alignment explanation
Indices: 70451474--70451608 Score: 191
Period size: 40 Copynumber: 3.4 Consensus size: 40
70451464 TCGATATCTC
* * *
70451474 GCACACTAAGTGCTATACATATCTGAAGCTATCTCAAATT
1 GCACACTAAGTGCCATATATAGCTGAAGCTATCTCAAATT
*
70451514 GCACACTAAGTGCCATATATAGCTGAAGCTATCTCAAATC
1 GCACACTAAGTGCCATATATAGCTGAAGCTATCTCAAATT
* * *
70451554 GCACACTAAGTGCCATATATAGCCGAAGCTATGTC-GATT
1 GCACACTAAGTGCCATATATAGCTGAAGCTATCTCAAATT
70451593 CGCACACTAAGTGCCA
1 -GCACACTAAGTGCCA
70451609 CAAATAACTG
Statistics
Matches: 86, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.02
40 84 0.98
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (40 bp):
GCACACTAAGTGCCATATATAGCTGAAGCTATCTCAAATT
Found at i:70458759 original size:40 final size:40
Alignment explanation
Indices: 70458632--70458748 Score: 207
Period size: 40 Copynumber: 2.9 Consensus size: 40
70458622 CGTACATATC
70458632 CGAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGT
1 CGAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGT
* *
70458672 CAAAGCTATGTCAAATCGCACACTAAGTGCCATATATAGT
1 CGAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGT
*
70458712 CGAAGCTATCTCAAATCGCACGCTAAGTGCCATATAT
1 CGAAGCTATCTCAAATCGCACACTAAGTGCCATATAT
70458749 TGCTGAAGCT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (40 bp):
CGAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGT
Found at i:70458777 original size:80 final size:80
Alignment explanation
Indices: 70458632--70458779 Score: 208
Period size: 80 Copynumber: 1.9 Consensus size: 80
70458622 CGTACATATC
* *
70458632 CGAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGTCAAAGCTATGTCAAATCGCACACTA
1 CGAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGTCAAAGCTACGTCAAATCGCAAACTA
70458697 AGTGCCATATATAGT
66 AGTGCCATATATAGT
* * * ** *
70458712 CGAAGCTATCTCAAATCGCACGCTAAGTGCCATATATTG-CTGAAGCTACGTTGAATTGCAAACT
1 CGAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGTC-AAAGCTACGTCAAATCGCAAACT
70458776 AAGT
65 AAGT
70458780 TCCACAAATA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
79 1 0.02
80 58 0.98
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (80 bp):
CGAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGTCAAAGCTACGTCAAATCGCAAACTA
AGTGCCATATATAGT
Found at i:70466523 original size:20 final size:21
Alignment explanation
Indices: 70466500--70466542 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
70466490 ATAAGCATGT
*
70466500 ATTTTG-ATGTTTGATGATAG
1 ATTTTGAATGCTTGATGATAG
*
70466520 ATTTTGAATGCTTGTTGATAG
1 ATTTTGAATGCTTGATGATAG
70466541 AT
1 AT
70466543 ATACAAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.26, C:0.02, G:0.23, T:0.49
Consensus pattern (21 bp):
ATTTTGAATGCTTGATGATAG
Found at i:70468758 original size:28 final size:28
Alignment explanation
Indices: 70468692--70468819 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
70468682 CATGAGATTG
* * **
70468692 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
70468721 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70468749 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
70468778 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70468806 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
70468820 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70468781 original size:57 final size:57
Alignment explanation
Indices: 70468692--70468819 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
70468682 CATGAGATTG
*
70468692 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
70468749 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
70468806 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
70468820 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:70472049 original size:47 final size:47
Alignment explanation
Indices: 70471971--70472138 Score: 246
Period size: 47 Copynumber: 3.6 Consensus size: 47
70471961 CCCTTCGGGA
* * * * * *
70471971 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
70472018 CCTGTCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
70472065 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
70472112 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
70472139 ACCAACCCTT
Statistics
Matches: 107, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 107 1.00
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:70472400 original size:40 final size:40
Alignment explanation
Indices: 70472363--70472455 Score: 152
Period size: 40 Copynumber: 2.3 Consensus size: 40
70472353 GCTACTCGTT
*
70472363 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
70472403 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
70472443 CAAATGCCTTCGG
1 CAAATGCCTTCGG
70472456 ATCTTAGTCC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
40 48 0.96
41 2 0.04
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:70476086 original size:34 final size:34
Alignment explanation
Indices: 70476034--70476114 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 34
70476024 TAACAACTAA
* *
70476034 GGCCTTAGCCCATTTCAGTAACAATAGCAATCTG
1 GGCCTAAGCCCATCTCAGTAACAATAGCAATCTG
* * * * *
70476068 GGCTTGAGCCCATCTCAGTAACAGTATCAGTCTG
1 GGCCTAAGCCCATCTCAGTAACAATAGCAATCTG
70476102 GGCCTAAGCCCAT
1 GGCCTAAGCCCAT
70476115 TAACATATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (34 bp):
GGCCTAAGCCCATCTCAGTAACAATAGCAATCTG
Found at i:70482664 original size:289 final size:289
Alignment explanation
Indices: 70482145--70482723 Score: 1113
Period size: 289 Copynumber: 2.0 Consensus size: 289
70482135 GCAATCCCAT
70482145 CCCAATGATCCATCCGCTACACACCAACTCCGTCCCCCGATACACATCATGTGAGGATATAAATA
1 CCCAATGATCCATCCGCTACACACCAACTCCGTCCCCCGATACACATCATGTGAGGATATAAATA
*
70482210 TCGACCCACCCAACCAATACACATTCATGGTAGCCCGGTTGCGGAACTACCTTCATTTATACATT
66 TCGACCCACCCAACCAATACACATCCATGGTAGCCCGGTTGCGGAACTACCTTCATTTATACATT
70482275 GGGCTTATAAGCCGTCGGTAGATCCACGGTTGTCAAGCAACCATGCGGTCCTCATATACTTCCTC
131 GGGCTTATAAGCCGTCGGTAGATCCACGGTTGTCAAGCAACCATGCGGTCCTCATATACTTCCTC
70482340 CGTTCCATAATTCCCAACCCATATGCAACCTAAGCAGAATATCATATGCGTGCAGCAGATATGCA
196 CGTTCCATAATTCCCAACCCATATGCAACCTAAGCAGAATATCATATGCGTGCAGCAGATATGCA
*
70482405 TGTAACATCCATAACACTTACATTCAACA
261 TATAACATCCATAACACTTACATTCAACA
* * *
70482434 CCCAATGATCCATCCGCTACACACCAACTCTGTCCCTCGATACACATCATGTGGGGATATAAATA
1 CCCAATGATCCATCCGCTACACACCAACTCCGTCCCCCGATACACATCATGTGAGGATATAAATA
70482499 TCGACCCACCCAACCAATACACATCCATGGTAGCCCGGTTGCGGAACTACCTTCATTTATACATT
66 TCGACCCACCCAACCAATACACATCCATGGTAGCCCGGTTGCGGAACTACCTTCATTTATACATT
70482564 GGGCTTATAAGCCGTCGGTAGATCCACGGTTGTCAAGCAACCATGCGGTCCTCATATACTTCCTC
131 GGGCTTATAAGCCGTCGGTAGATCCACGGTTGTCAAGCAACCATGCGGTCCTCATATACTTCCTC
70482629 CGTTCCATAATTCCCAACCCATATGCAACCTAAGCAGAATATCATATGCGTGCAGCAGATATGCA
196 CGTTCCATAATTCCCAACCCATATGCAACCTAAGCAGAATATCATATGCGTGCAGCAGATATGCA
70482694 TATAACATCCATAACACTTACATTCAACA
261 TATAACATCCATAACACTTACATTCAACA
70482723 C
1 C
70482724 TTAGGGGTAA
Statistics
Matches: 285, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
289 285 1.00
ACGTcount: A:0.30, C:0.31, G:0.15, T:0.24
Consensus pattern (289 bp):
CCCAATGATCCATCCGCTACACACCAACTCCGTCCCCCGATACACATCATGTGAGGATATAAATA
TCGACCCACCCAACCAATACACATCCATGGTAGCCCGGTTGCGGAACTACCTTCATTTATACATT
GGGCTTATAAGCCGTCGGTAGATCCACGGTTGTCAAGCAACCATGCGGTCCTCATATACTTCCTC
CGTTCCATAATTCCCAACCCATATGCAACCTAAGCAGAATATCATATGCGTGCAGCAGATATGCA
TATAACATCCATAACACTTACATTCAACA
Found at i:70483144 original size:29 final size:28
Alignment explanation
Indices: 70483038--70483155 Score: 114
Period size: 29 Copynumber: 4.1 Consensus size: 28
70483028 ACATACATGC
* *
70483038 ATATGGCCCACTT-GGCCC-AATCTCATTT
1 ATATGGCCCA-TTAGGCCCAAATCAC-CTT
* * **
70483066 ATATGGCCCATCAGGCCCAATTCATATT
1 ATATGGCCCATTAGGCCCAAATCACCTT
70483094 CATATGGCCCATTAGGCCCAAATCACCTTT
1 -ATATGGCCCATTAGGCCCAAATCACC-TT
* *
70483124 ATATGGCCCGTTAGGCCCAAATTACCTT
1 ATATGGCCCATTAGGCCCAAATCACCTT
70483152 ATAT
1 ATAT
70483156 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
27 1 0.01
28 23 0.31
29 49 0.65
30 2 0.03
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAAATCACCTT
Found at i:70486093 original size:46 final size:46
Alignment explanation
Indices: 70485929--70486099 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
70485919 GGTTGAGCAT
*
70485929 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * * *
70485974 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
* *
70486019 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
*
70486067 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70486100 GGGCGGGTTA
Statistics
Matches: 105, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
42 6 0.06
44 4 0.04
45 27 0.26
46 31 0.30
47 27 0.26
48 5 0.05
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:70493518 original size:46 final size:46
Alignment explanation
Indices: 70493468--70493593 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
70493458 TGGTTGAGCA
*
70493468 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
70493514 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
70493560 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70493594 GGGCGGGTTA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:70496992 original size:33 final size:33
Alignment explanation
Indices: 70496905--70497006 Score: 105
Period size: 33 Copynumber: 3.1 Consensus size: 33
70496895 TAATAGCTAG
* * * * *
70496905 GGCCTTAGCCCATTTCAGTAACAGTAGCAATTT
1 GGCCTGAGCCCGTCTCAGTAACAGTAGCAGTCT
70496938 GGGCCTGAGCCCGTCTCAGTAACAGTAGCAGTCT
1 -GGCCTGAGCCCGTCTCAGTAACAGTAGCAGTCT
* * * * *
70496972 GGCTTGAGCTCGTTTTAGTAATAGTAGCAGTCT
1 GGCCTGAGCCCGTCTCAGTAACAGTAGCAGTCT
70497005 GG
1 GG
70497007 GCCGAAGCCC
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
33 30 0.52
34 28 0.48
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (33 bp):
GGCCTGAGCCCGTCTCAGTAACAGTAGCAGTCT
Found at i:70499668 original size:40 final size:40
Alignment explanation
Indices: 70499519--70499698 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
70499509 CGAATGATGT
* * * *
70499519 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATC
* * *
70499559 CGGACTAAGAT-CCGAAGGCA-TTGTGCGAGATACTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
70499598 CGGGCTAAG-CCTGAAGGCA-TTGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
70499636 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
*
70499676 CGGGCTATGT-CCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
70499699 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
38 33 0.28
39 37 0.31
40 46 0.39
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:70499720 original size:78 final size:77
Alignment explanation
Indices: 70499570--70499731 Score: 181
Period size: 78 Copynumber: 2.1 Consensus size: 77
70499560 GGACTAAGAT
*
70499570 CCGAAGGCATTGTGCGAGATACTAATTCCGGGCTAAGCCTGAAGGCATTGTGCGAGTTACTAAAT
1 CCGAAGGCATTGTGCGAGATACTAATACCGGGCTAAGCCTGAAGGCATTGTGCGAGTTACTAAAT
*
70499635 CCGGGTTAAGTC
66 CCGGGTTAAATC
* *
70499647 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCC-GAAGGCATT-TGAACGAG-TAG
1 CCGAAGGCA-TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCTGAAGGCATTGTG--CGAGTTA-
* *
70499708 CTATATCC-GGTTAAATT
60 CTAAATCCGGGTTAAATC
70499725 CCGAAGG
1 CCGAAGG
70499732 TACGTGATTT
Statistics
Matches: 73, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
77 13 0.18
78 47 0.64
79 13 0.18
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTGTGCGAGATACTAATACCGGGCTAAGCCTGAAGGCATTGTGCGAGTTACTAAAT
CCGGGTTAAATC
Done.