Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 214 of 352
Found at i:70563902 original size:17 final size:17
Alignment explanation
Indices: 70563880--70563913 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
70563870 AGACAAGAAT
*
70563880 TTCCGTTCAAATTTAAA
1 TTCCGTCCAAATTTAAA
70563897 TTCCGTCCAAATTTAAA
1 TTCCGTCCAAATTTAAA
70563914 ACTTTTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (17 bp):
TTCCGTCCAAATTTAAA
Found at i:70564754 original size:16 final size:16
Alignment explanation
Indices: 70564733--70564788 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
70564723 TTAGACTCAT
70564733 TAACCATAAGCAACCA
1 TAACCATAAGCAACCA
* *** *
70564749 TAACCACATTAAAGCA
1 TAACCATAAGCAACCA
*
70564765 TAAACATAAGCAACCA
1 TAACCATAAGCAACCA
70564781 TAACCATA
1 TAACCATA
70564789 TTAAAGCATA
Statistics
Matches: 28, Mismatches: 12, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.52, C:0.27, G:0.05, T:0.16
Consensus pattern (16 bp):
TAACCATAAGCAACCA
Found at i:70564773 original size:32 final size:32
Alignment explanation
Indices: 70564737--70564802 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
70564727 ACTCATTAAC
70564737 CATAAGCAACCATAACCACATTAAAGCATAAA
1 CATAAGCAACCATAACCACATTAAAGCATAAA
*
70564769 CATAAGCAACCATAACCATATTAAAGCATAAA
1 CATAAGCAACCATAACCACATTAAAGCATAAA
70564801 CA
1 CA
70564803 CATTTGCATG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.53, C:0.24, G:0.06, T:0.17
Consensus pattern (32 bp):
CATAAGCAACCATAACCACATTAAAGCATAAA
Found at i:70564798 original size:16 final size:16
Alignment explanation
Indices: 70564747--70564799 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
70564737 CATAAGCAAC
*
70564747 CATAACCACATTAAAG
1 CATAACCATATTAAAG
* *** *
70564763 CATAAACATAAGCAAC
1 CATAACCATATTAAAG
70564779 CATAACCATATTAAAG
1 CATAACCATATTAAAG
70564795 CATAA
1 CATAA
70564800 ACACATTTGC
Statistics
Matches: 26, Mismatches: 11, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.53, C:0.23, G:0.06, T:0.19
Consensus pattern (16 bp):
CATAACCATATTAAAG
Found at i:70565634 original size:45 final size:45
Alignment explanation
Indices: 70565570--70565657 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 45
70565560 CCAAAACATG
* * *
70565570 TGTCACATACATCATGAACTCAGACCATAACTCAATGAGTTCAAA
1 TGTCACAAACATCATGAACTCAAACCACAACTCAATGAGTTCAAA
* * *
70565615 TGTCACAAATATCATGAACTTAAACCACAATTCAATGAGTTCA
1 TGTCACAAACATCATGAACTCAAACCACAACTCAATGAGTTCA
70565658 GATCACAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.41, C:0.23, G:0.10, T:0.26
Consensus pattern (45 bp):
TGTCACAAACATCATGAACTCAAACCACAACTCAATGAGTTCAAA
Found at i:70578537 original size:47 final size:47
Alignment explanation
Indices: 70578483--70578814 Score: 495
Period size: 47 Copynumber: 7.1 Consensus size: 47
70578473 TTAGGATTTT
** * * *
70578483 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
70578530 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
70578577 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
70578624 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
70578671 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
70578718 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
70578765 ATGTGATGAACGTAGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
70578812 ATG
1 ATG
70578815 CAAAATGTGT
Statistics
Matches: 267, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 264 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:70578607 original size:25 final size:25
Alignment explanation
Indices: 70578578--70578702 Score: 76
Period size: 25 Copynumber: 5.2 Consensus size: 25
70578568 GAATGGCCAA
70578578 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
70578603 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
70578625 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
70578650 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
70578672 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
70578697 TGTGAT
1 TGTGAT
70578703 AAGGCCGAAT
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 18 0.24
23 16 0.22
24 16 0.22
25 24 0.32
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATATG
Found at i:70578630 original size:22 final size:22
Alignment explanation
Indices: 70578603--70578677 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
70578593 CATGCATATG
70578603 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
70578625 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
70578648 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
70578672 TGTGAT
1 TGTGAT
70578678 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:70578844 original size:46 final size:46
Alignment explanation
Indices: 70578788--70578970 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
70578778 AGAAGTGTAT
* * * **
70578788 ATATGTGGTAAAGCCGAATGGCTAATGCAAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
*
70578834 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
*
70578880 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * * *
70578926 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
70578971 TGTATATATA
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 126 1.00
ACGTcount: A:0.36, C:0.09, G:0.30, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:70581619 original size:40 final size:40
Alignment explanation
Indices: 70581522--70581724 Score: 313
Period size: 40 Copynumber: 5.1 Consensus size: 40
70581512 GGACTAAGAT
* *
70581522 GAAGGCATTTATGCT-AGTGACTATATCCGGGCTAAGT-CC
1 GAAGGCATTTGTG-TGAGTTACTATATCCGGGCTAAGTCCC
*
70581561 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCC
70581601 GAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCC
* *
70581641 GAAGGCATTTATGCGAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCC
* *
70581681 GAAGGCATTTGTGTGAGTTGCTATATCC-GGCTAAATCCC
1 GAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCC
70581720 GAAGG
1 GAAGG
70581725 TACTTGGGTT
Statistics
Matches: 152, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 48 0.32
40 104 0.68
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
GAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCC
Found at i:70588845 original size:40 final size:40
Alignment explanation
Indices: 70588780--70588985 Score: 324
Period size: 40 Copynumber: 5.2 Consensus size: 40
70588770 GGACTAAGAT
* * * *
70588780 CCGAAGGCATTTGTGCTAGTGACTATATCTGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
70588820 TCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
70588860 CCGAAGGCATTTGTGCGAGTTACTATATCCGTGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
70588900 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
70588940 CTGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
70588979 CCGAAGG
1 CCGAAGG
70588986 TACTTGGGTT
Statistics
Matches: 154, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 14 0.09
40 140 0.91
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:70591489 original size:175 final size:175
Alignment explanation
Indices: 70591198--70591550 Score: 697
Period size: 175 Copynumber: 2.0 Consensus size: 175
70591188 TTAGGGACAA
*
70591198 ATTGTATGAATAAAGTTGTTTTAAAGAAAAATTTTATAGTCTGATTTTTGCATGAAGATTATGTA
1 ATTGTATGAATAAAGTTGTTTTAAAGAAAAATTTTATAGTCCGATTTTTGCATGAAGATTATGTA
70591263 TGTGTTCGGTAATGCCTCATATCCTATCCCAGCCTCGAGTACGTGTAAGAGGTGTTACATTTAGT
66 TGTGTTCGGTAATGCCTCATATCCTATCCCAGCCTCGAGTACGTGTAAGAGGTGTTACATTTAGT
70591328 GGTATCAGAGCTATGGTTTAGTCGATTCTCAAACTAGCCTAGCAT
131 GGTATCAGAGCTATGGTTTAGTCGATTCTCAAACTAGCCTAGCAT
70591373 ATTGTATGAATAAAGTTGTTTTAAAGAAAAATTTTATAGTCCGATTTTTGCATGAAGATTATGTA
1 ATTGTATGAATAAAGTTGTTTTAAAGAAAAATTTTATAGTCCGATTTTTGCATGAAGATTATGTA
70591438 TGTGTTCGGTAATGCCTCATATCCTATCCCAGCCTCGAGTACGTGTAAGAGGTGTTACATTTAGT
66 TGTGTTCGGTAATGCCTCATATCCTATCCCAGCCTCGAGTACGTGTAAGAGGTGTTACATTTAGT
70591503 GGTATCAGAGCTATGGTTTAGTCGATTCTCAAACTAGCCTAGCAT
131 GGTATCAGAGCTATGGTTTAGTCGATTCTCAAACTAGCCTAGCAT
70591548 ATT
1 ATT
70591551 TGTGTAATGC
Statistics
Matches: 177, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
175 177 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (175 bp):
ATTGTATGAATAAAGTTGTTTTAAAGAAAAATTTTATAGTCCGATTTTTGCATGAAGATTATGTA
TGTGTTCGGTAATGCCTCATATCCTATCCCAGCCTCGAGTACGTGTAAGAGGTGTTACATTTAGT
GGTATCAGAGCTATGGTTTAGTCGATTCTCAAACTAGCCTAGCAT
Found at i:70597918 original size:15 final size:15
Alignment explanation
Indices: 70597887--70597947 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
70597877 AGAAAATCGA
* *
70597887 ATAAAGAAGTCCGAG
1 ATAAAGAAATCCAAG
*
70597902 ATAGAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
70597917 ATAAATAAACTCCCAAG
1 ATAAAGAAA-T-CCAAG
**
70597934 ATTTAGAAATCCAA
1 ATAAAGAAATCCAA
70597948 TTTAGAATAC
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
15 23 0.64
16 2 0.06
17 11 0.31
ACGTcount: A:0.51, C:0.16, G:0.15, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:70601657 original size:40 final size:40
Alignment explanation
Indices: 70601419--70601643 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
70601409 TTGAATGATG
* * * *
70601419 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
70601459 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
70601499 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70601538 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70601578 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70601619 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70601644 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 122 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70601665 original size:119 final size:119
Alignment explanation
Indices: 70601419--70601676 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
70601409 TTGAATGATG
* *
70601419 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
70601484 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
* * * **
70601538 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
70601601 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAA
* *
70601658 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
70601677 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.70
120 32 0.27
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
Found at i:70609678 original size:40 final size:40
Alignment explanation
Indices: 70609440--70609664 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
70609430 TTGAATGATG
* * * *
70609440 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
70609480 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
70609520 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70609559 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70609599 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70609640 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70609665 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 122 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70609686 original size:119 final size:119
Alignment explanation
Indices: 70609440--70609697 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
70609430 TTGAATGATG
* *
70609440 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
70609505 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
* * * **
70609559 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
70609622 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAA
* *
70609679 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
70609698 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.70
120 32 0.27
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
Found at i:70615906 original size:14 final size:14
Alignment explanation
Indices: 70615883--70615912 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70615873 AGGGTGTTAC
70615883 ATCATCATATACAT
1 ATCATCATATACAT
*
70615897 ATCATTATATACAT
1 ATCATCATATACAT
70615911 AT
1 AT
70615913 AACTCAATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (14 bp):
ATCATCATATACAT
Found at i:70617555 original size:15 final size:15
Alignment explanation
Indices: 70617537--70617567 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
70617527 ACATAATAGC
70617537 ATATATCATAAAACT
1 ATATATCATAAAACT
70617552 ATATATCATAAAACT
1 ATATATCATAAAACT
70617567 A
1 A
70617568 AGTCCCTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (15 bp):
ATATATCATAAAACT
Found at i:70622712 original size:43 final size:40
Alignment explanation
Indices: 70622485--70622705 Score: 302
Period size: 40 Copynumber: 5.5 Consensus size: 40
70622475 AAACCAAGTA
* * *
70622485 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
70622524 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
70622564 CCTTCGGGACTTATCCCGGATATACTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
70622604 CCTTCGAGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70622644 CCTTCGGGACTTAGCCCGGTTATCATAGTAACTCGCACAAATT
1 CCTTCGGGACTTAGCCCGG--AT-ATAGTAACTCGCACAAATG
*
70622687 CCTTCCGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70622706 TTATCATCCG
Statistics
Matches: 162, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 14 0.09
40 111 0.69
42 2 0.01
43 35 0.22
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70630720 original size:40 final size:40
Alignment explanation
Indices: 70630640--70630816 Score: 261
Period size: 40 Copynumber: 4.5 Consensus size: 40
70630630 AAACCAAGTA
* * *
70630640 CCTTCGGGATTTAG-CC-GATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
70630678 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70630718 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
70630758 CCTTCGAGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70630798 CCTTGGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70630817 TTATCATCCG
Statistics
Matches: 127, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
38 13 0.10
39 3 0.02
40 111 0.87
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70639775 original size:28 final size:29
Alignment explanation
Indices: 70639713--70639768 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 29
70639703 GCATGACTAT
70639713 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
70639742 GAATGTGA-TTGGGCCTAATGGGCCATA
1 GAATGTGATTTGGGCCTAATGGGCCATA
70639769 TACATGTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:70649101 original size:23 final size:23
Alignment explanation
Indices: 70649071--70649116 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
70649061 ATTGTAAATA
70649071 ATGAAAAGTTTCTTTCTTCTCTT
1 ATGAAAAGTTTCTTTCTTCTCTT
70649094 ATGAAAAGTTTCTTTCTTCTCTT
1 ATGAAAAGTTTCTTTCTTCTCTT
70649117 CTCTTCTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.17, G:0.09, T:0.52
Consensus pattern (23 bp):
ATGAAAAGTTTCTTTCTTCTCTT
Found at i:70653368 original size:27 final size:27
Alignment explanation
Indices: 70653338--70653391 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
70653328 CTTTATAATT
70653338 GAAAGGTCCTTATGTGGTTATTATGCC
1 GAAAGGTCCTTATGTGGTTATTATGCC
70653365 GAAAGGTCCTTATGTGGTTATTATGCC
1 GAAAGGTCCTTATGTGGTTATTATGCC
70653392 ATTTACTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.37
Consensus pattern (27 bp):
GAAAGGTCCTTATGTGGTTATTATGCC
Found at i:70657581 original size:39 final size:40
Alignment explanation
Indices: 70657536--70657703 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
70657526 CGGGGTTTAG
* * *
70657536 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
70657575 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
70657615 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
70657655 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
70657696 CCGGATAT
1 CCGGATAT
70657704 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:70657686 original size:41 final size:40
Alignment explanation
Indices: 70657559--70657703 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
70657549 CTCGCACAAG
* * * * *
70657559 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
70657599 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
70657639 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
70657680 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
70657704 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:70658932 original size:38 final size:38
Alignment explanation
Indices: 70658890--70658965 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
70658880 CAATAACTCC
*
70658890 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAAAAATGAA
70658928 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAAAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAAAAATGAA
70658966 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAAAAATGAA
Found at i:70660650 original size:29 final size:29
Alignment explanation
Indices: 70660608--70660665 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
70660598 TATATGAAAG
70660608 TTTTGAGTATTGTGAGAAAGGGCAGTGAA
1 TTTTGAGTATTGTGAGAAAGGGCAGTGAA
*
70660637 TTTTGAGTATTGTGAGAAAGGGCTGTGAA
1 TTTTGAGTATTGTGAGAAAGGGCAGTGAA
70660666 GCTTACTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.29, C:0.03, G:0.34, T:0.33
Consensus pattern (29 bp):
TTTTGAGTATTGTGAGAAAGGGCAGTGAA
Found at i:70667616 original size:30 final size:30
Alignment explanation
Indices: 70667582--70667640 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
70667572 GGAAGTTATG
* *
70667582 GCACTAGGTGTGCAATTTAAAGTAGCTTTC
1 GCACTAAGTGTGCAATTTAAACTAGCTTTC
*
70667612 GCACTAAGTGTGCGATTTAAACTAGCTTT
1 GCACTAAGTGTGCAATTTAAACTAGCTTT
70667641 GGCTACTTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (30 bp):
GCACTAAGTGTGCAATTTAAACTAGCTTTC
Found at i:70680946 original size:93 final size:93
Alignment explanation
Indices: 70680834--70681005 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
70680824 CACCCATAAG
* *
70680834 CGAACTCGGACTCAACTCAACGAGCTC-AGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGA-ACATTCGCATCCATAAGTGAACTCGGACTCAACTC
70680898 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
70680927 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70680992 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70681006 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 74 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70681000 original size:46 final size:47
Alignment explanation
Indices: 70680827--70681000 Score: 198
Period size: 46 Copynumber: 3.7 Consensus size: 47
70680817 TGTAACCCAC
* * *
70680827 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-AGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
* * *
70680873 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GA-GAC-A-TTCGCAT
*
70680923 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGA-ACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
*
70680966 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
70681001 GATGCTCAAT
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 26 0.24
48 3 0.03
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
Found at i:70707372 original size:47 final size:47
Alignment explanation
Indices: 70707318--70707774 Score: 707
Period size: 47 Copynumber: 9.6 Consensus size: 47
70707308 GTATATTTGA
*
70707318 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
70707365 ATGAATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
70707412 ATGAATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
70707461 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
70707508 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
70707555 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
70707604 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
70707651 ATGAATGTGACAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
70707698 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
70707745 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
70707775 TCCCGAAGGG
Statistics
Matches: 375, Mismatches: 31, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 287 0.77
49 88 0.23
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:70707477 original size:143 final size:143
Alignment explanation
Indices: 70707318--70707774 Score: 765
Period size: 143 Copynumber: 3.2 Consensus size: 143
70707308 GTATATTTGA
*
70707318 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTAT
* *
70707383 ATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCCT
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
70707448 AATGGCCGATGTG
131 AATGGCCGATGTG
70707461 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTAT
70707526 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
70707591 AATGGCCGATGTG
131 AATGGCCGATGTG
* *
70707604 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGACAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTAT
* * * * *
70707669 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCG
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
* * *
70707732 AGTGGCCAACGTG
131 AATGGCCGATGTG
* *
70707745 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
70707775 TCCCGAAGGG
Statistics
Matches: 299, Mismatches: 15, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
141 54 0.18
143 245 0.82
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
AATGGCCGATGTG
Found at i:70707648 original size:190 final size:191
Alignment explanation
Indices: 70707318--70707774 Score: 726
Period size: 190 Copynumber: 2.4 Consensus size: 191
70707308 GTATATTTGA
* * *
70707318 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTG--T
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
*
70707381 ATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATATGATAAGGC
66 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATATATATGATAAGGC
*
70707446 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATG
130 CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATG
70707508 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* * *
70707573 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
66 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATATATGATAAGGCC
* * *
70707637 TAATAGCCGATGTGATGAATGTGACAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
131 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATG
* * * * *
70707698 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
70707763 A-A-ATGTGATAAG
66 ATATATGTGATAAG
70707775 TCCCGAAGGG
Statistics
Matches: 249, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
188 10 0.04
189 1 0.00
190 194 0.78
192 44 0.18
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (191 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATATATGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATG
Found at i:70710053 original size:40 final size:40
Alignment explanation
Indices: 70709969--70710152 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
70709959 TTGAATGCTG
* * * *
70709969 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
70710008 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
70710049 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
70710089 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
70710129 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70710153 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:70710106 original size:80 final size:81
Alignment explanation
Indices: 70709969--70710149 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
70709959 TTGAATGCTG
* * *
70709969 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
70710033 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
70710049 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
70710110 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
70710129 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
70710150 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:70710173 original size:39 final size:38
Alignment explanation
Indices: 70710050--70710199 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
70710040 GTTATTAATT
* ** * *
70710050 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
70710090 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
70710129 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
70710169 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
70710200 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:70717934 original size:40 final size:39
Alignment explanation
Indices: 70717804--70717986 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 39
70717794 TTGAATGCTG
* *
70717804 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTAAT
** * *
70717843 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTACTAAT
*
70717883 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT
* ** *
70717923 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTACT-AAT
70717963 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70717987 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 30 0.24
40 84 0.68
41 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTACTAAT
Found at i:70717940 original size:79 final size:81
Alignment explanation
Indices: 70717804--70717983 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
70717794 TTGAATGCTG
* * *
70717804 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
70717868 TGTGCGAGTATT-AAT
66 CGTGCGAGTATTAAAA
**
70717883 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
*
70717944 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTATTAAAA
70717963 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
70717984 ATTGAATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
78 2 0.02
79 54 0.61
80 32 0.36
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTATTAAAA
Found at i:70717999 original size:79 final size:79
Alignment explanation
Indices: 70717838--70718023 Score: 198
Period size: 79 Copynumber: 2.4 Consensus size: 79
70717828 GTGCTAAGTG
* * * * *
70717838 ACTATATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTATTAATTCCGGGTTAAGTCCCGAAG
1 ACTATAACCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTATTAAATCCGGGTTAAGTCCCGAAG
* **
70717902 GCCTTTGTGCGAGAT
65 GCCATTGAACGAGAT
* * *
70717917 ACTA-ATTCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTCCCGAA
1 ACTATA-ACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTATT-AAATCCGGGTTAAGTCCCGAA
* *
70717981 GG-CATTGAATGAGTT
64 GGCCATTGAACGAGAT
*
70717996 ACTATAACCGGGCTATGTCCCGAAGGCA
1 ACTATAACCGGGCTAAGTCCCGAAGGCA
70718024 CTTGAACGAG
Statistics
Matches: 89, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.02
79 64 0.72
80 23 0.26
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
ACTATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTATTAAATCCGGGTTAAGTCCCGAAGG
CCATTGAACGAGAT
Found at i:70718007 original size:39 final size:38
Alignment explanation
Indices: 70717884--70718033 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
70717874 AGTATTAATT
* ** * *
70717884 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
70717924 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
70717963 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
70718003 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
70718034 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:70720464 original size:40 final size:40
Alignment explanation
Indices: 70720101--70720446 Score: 566
Period size: 40 Copynumber: 8.7 Consensus size: 40
70720091 GAGAATTGAG
*
70720101 AGTGATATATCCGGGCTAAGTCTCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
70720141 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
70720181 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
70720221 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
70720261 AGTGGTATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
70720301 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
70720341 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* ** * *
70720381 AGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
70720421 GGTGTTATATCTGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
70720447 AGAGTAATCA
Statistics
Matches: 286, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 286 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:70724351 original size:47 final size:47
Alignment explanation
Indices: 70724297--70724657 Score: 569
Period size: 47 Copynumber: 7.6 Consensus size: 47
70724287 GTATATTTGA
* *
70724297 ATGAATGTGAAAGTGTATATATGTGAAAAGGCCTAATGGCCGATATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
70724344 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
70724391 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
70724440 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
70724487 ATGAATGTGACAGTGTATATATGTGATAAGGCCTAAGGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
70724534 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
70724581 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
70724628 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
70724658 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 22, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
47 245 0.84
49 45 0.16
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:70724455 original size:143 final size:141
Alignment explanation
Indices: 70724297--70724668 Score: 573
Period size: 143 Copynumber: 2.6 Consensus size: 141
70724287 GTATATTTGA
*
70724297 ATGAATGTGAAAGTGTATATATGTGAAAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGAAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
70724362 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
66 ATATGTGATAAGGCCGAAGGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
70724427 AATGGCCGATGTG
129 AATGGCCGATGTG
* * *
70724440 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGACAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGAAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
70724505 ATATGTGATAAGGCCTAAGGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
66 ATATGTGATAAGGCCGAAGGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
70724570 TGGCCGATGTG
131 TGGCCGATGTG
* * * * * * *
70724581 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGAAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
70724646 AAATGTGATAAGTCCCGAAGGGC
66 ATATGTGATAAG-GCCGAAGGGC
70724669 ATTTGTGTCA
Statistics
Matches: 209, Mismatches: 19, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
141 99 0.47
142 8 0.04
143 102 0.49
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (141 bp):
ATGAATGTGAAAGTGTATATATGTGAAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCGAAGGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TGGCCGATGTG
Found at i:70730487 original size:29 final size:29
Alignment explanation
Indices: 70730445--70730535 Score: 116
Period size: 28 Copynumber: 3.2 Consensus size: 29
70730435 ACATGGCTTG
*
70730445 GAAT-TGATTCGGGCC-AGATGGGCCATAT
1 GAATGTGATTTGGGCCTAG-TGGGCCATAT
70730473 GAATGTGATTTGGGCCTAGTGGGCCATAT
1 GAATGTGATTTGGGCCTAGTGGGCCATAT
* *
70730502 GAATGAGA-TTGGGCCTAGCGGGCCATAT
1 GAATGTGATTTGGGCCTAGTGGGCCATAT
*
70730530 GCATGT
1 GAATGT
70730536 ATGTAGACTT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
28 27 0.48
29 27 0.48
30 2 0.04
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.26
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAGTGGGCCATAT
Found at i:70733695 original size:37 final size:36
Alignment explanation
Indices: 70733591--70733763 Score: 129
Period size: 36 Copynumber: 4.7 Consensus size: 36
70733581 CTTGTTTTAA
* *
70733591 CGTGTTATCGGGTGGTTTAGCTCTTATGAGCATTTGG
1 CGTGTTATCGGGTGG-CTAGCTCTTATGAGCAATTGG
** *
70733628 CGTGTT-TCGATTAGACTAGCTCTTCA-GAGCAATTGG
1 CGTGTTATCGGGT-GGCTAGCTCTT-ATGAGCAATTGG
* * * *
70733664 CGTGTTATTGGGTGGTTGAGCTCTTATGAGCATTTGA
1 CGTGTTATCGGGTGGCT-AGCTCTTATGAGCAATTGG
* * * *
70733701 CGTGTT-TTGGTTGAACTAGCTCTTCA-AAGCAATTGG
1 CGTGTTATCGGGTG-GCTAGCTCTT-ATGAGCAATTGG
*
70733737 CGTGTTATCGGGTGGATGAGCTCTTAT
1 CGTGTTATCGGGTGGCT-AGCTCTTAT
70733764 CAGCGTCTGG
Statistics
Matches: 104, Mismatches: 22, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
36 58 0.56
37 46 0.44
ACGTcount: A:0.18, C:0.15, G:0.29, T:0.38
Consensus pattern (36 bp):
CGTGTTATCGGGTGGCTAGCTCTTATGAGCAATTGG
Found at i:70733719 original size:73 final size:73
Alignment explanation
Indices: 70733591--70733763 Score: 267
Period size: 73 Copynumber: 2.4 Consensus size: 73
70733581 CTTGTTTTAA
* * *
70733591 CGTGTTATCGGGTGGTTTAGCTCTTATGAGCATTTGGCGTGTTTCGATTAGACTAGCTCTTCAGA
1 CGTGTTATCGGGTGGTTGAGCTCTTATGAGCATTTGACGTGTTTCGATTAGACTAGCTCTTCAAA
70733656 GCAATTGG
66 GCAATTGG
* * *
70733664 CGTGTTATTGGGTGGTTGAGCTCTTATGAGCATTTGACGTGTTTTGGTT-GAACTAGCTCTTCAA
1 CGTGTTATCGGGTGGTTGAGCTCTTATGAGCATTTGACGTGTTTCGATTAG-ACTAGCTCTTCAA
70733728 AGCAATTGG
65 AGCAATTGG
*
70733737 CGTGTTATCGGGTGGATGAGCTCTTAT
1 CGTGTTATCGGGTGGTTGAGCTCTTAT
70733764 CAGCGTCTGG
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
72 1 0.01
73 90 0.99
ACGTcount: A:0.18, C:0.15, G:0.29, T:0.38
Consensus pattern (73 bp):
CGTGTTATCGGGTGGTTGAGCTCTTATGAGCATTTGACGTGTTTCGATTAGACTAGCTCTTCAAA
GCAATTGG
Found at i:70736256 original size:47 final size:47
Alignment explanation
Indices: 70736158--70736257 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 47
70736148 TCGGGACTTA
* * * *
70736158 TCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTG
* * * *
70736205 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTT
1 TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTG
70736252 TCACAT
1 TCACAT
70736258 TCATCACATC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.25, C:0.33, G:0.10, T:0.32
Consensus pattern (47 bp):
TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTG
Found at i:70736257 original size:31 final size:31
Alignment explanation
Indices: 70736219--70736288 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 31
70736209 ATATATACAC
70736219 TTTCACATTCATCACATCGGCCATTAGGCCT
1 TTTCACATTCATCACATCGGCCATTAGGCCT
**
70736250 TTTCACATTCATCACATCGGCTGTTAGGCCT
1 TTTCACATTCATCACATCGGCCATTAGGCCT
*
70736281 TATCACAT
1 TTTCACAT
70736289 ATATACACTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.34
Consensus pattern (31 bp):
TTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:70736359 original size:49 final size:49
Alignment explanation
Indices: 70736250--70736813 Score: 749
Period size: 49 Copynumber: 11.2 Consensus size: 49
70736240 CATTAGGCCT
* ** *
70736250 TTTCACATTCATCACATCGGCTGTTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
* *
70736297 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
70736346 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
70736395 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
*
70736444 TTTCACATTCATCACATTGGCCATTCGACCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
* *
70736491 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
70736540 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
*** * *
70736589 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAGGCCATTCGGCC
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA-TATATAC--AC
** *
70736641 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 TT-TCAC--AT-T-CA---TCACATT-GGC-CAT---TC----GGCCTTATCACATATATATACA
70736706 C
49 C
*
70736707 TTTCATATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
*
70736756 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
70736805 TTTCACATT
1 TTTCACATT
70736814 TATTCAAATA
Statistics
Matches: 464, Mismatches: 29, Indels: 46
0.86 0.05 0.09
Matches are distributed among these distances:
47 79 0.17
49 318 0.69
50 3 0.01
52 3 0.01
53 5 0.01
55 2 0.00
56 4 0.01
57 3 0.01
58 7 0.02
60 7 0.02
61 3 0.01
62 4 0.01
63 2 0.00
65 4 0.01
66 3 0.01
68 3 0.01
69 14 0.03
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACAC
Found at i:70736495 original size:145 final size:146
Alignment explanation
Indices: 70736250--70736813 Score: 801
Period size: 145 Copynumber: 3.7 Consensus size: 146
70736240 CATTAGGCCT
* ** *
70736250 TTTCACATTCATCACATCGGCTGTTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACA
* * *
70736313 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTT
66 TTGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
70736378 ATCACATATATATACAC
130 ATCACATATATATACAC
70736395 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACA
* *
70736460 TTGGCCATTCGACCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 TTGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
70736524 TCACATATATATACAC
131 TCACATATATATACAC
70736540 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
70736605 TTGGCCATTCGGCCTTATCACATAGGCCATTCGGCCTTATCACATATATACACTTTCACATTCAT
66 TTGGCCATTAGGCCTTATCAC--A----A--------TAT-A------TACACTTTCACATTCAT
70736670 CACATCGGCCATTAGGCCTTATCACATATATATACAC
110 CACATCGGCCATTAGGCCTTATCACATATATATACAC
*
70736707 TTTCATATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACA
70736772 TTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
66 TTGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATT
70736814 TATTCAAATA
Statistics
Matches: 382, Mismatches: 13, Indels: 46
0.87 0.03 0.10
Matches are distributed among these distances:
145 175 0.46
147 58 0.15
152 1 0.00
153 1 0.00
154 3 0.01
160 3 0.01
161 1 0.00
162 1 0.00
165 1 0.00
167 138 0.36
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (146 bp):
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
TCACATATATATACAC
Found at i:70736627 original size:22 final size:22
Alignment explanation
Indices: 70736599--70736650 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
70736589 TTTCACATTC
*
70736599 ATCACATTGGCCATTCGGCCTT
1 ATCACATAGGCCATTCGGCCTT
70736621 ATCACATAGGCCATTCGGCCTT
1 ATCACATAGGCCATTCGGCCTT
70736643 ATCACATA
1 ATCACATA
70736651 TATACACTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (22 bp):
ATCACATAGGCCATTCGGCCTT
Found at i:70736635 original size:167 final size:167
Alignment explanation
Indices: 70736454--70736795 Score: 648
Period size: 167 Copynumber: 2.0 Consensus size: 167
70736444 TTTCACATTC
*
70736454 ATCACATTGGCCATTCGACCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 ATCACATAGGCCATTCGACCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
70736519 CCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
66 CCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
*
70736584 TACACTTTCACATTCATCACATTGGCCATTCGGCCTT
131 TACACTTTCACATTCATCACATTGGCCATTAGGCCTT
*
70736621 ATCACATAGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 ATCACATAGGCCATTCGACCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
*
70736686 CCTTATCACATATATATACACTTTCATATTCATCACATTGGCCATTCGGCCTTATCACATATATA
66 CCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
70736751 TACACTTTCACATTCATCACATTGGCCATTAGGCCTT
131 TACACTTTCACATTCATCACATTGGCCATTAGGCCTT
70736788 ATCACATA
1 ATCACATA
70736796 TATATACACT
Statistics
Matches: 171, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
167 171 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (167 bp):
ATCACATAGGCCATTCGACCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
CCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
TACACTTTCACATTCATCACATTGGCCATTAGGCCTT
Found at i:70736635 original size:216 final size:215
Alignment explanation
Indices: 70736405--70736813 Score: 712
Period size: 216 Copynumber: 1.9 Consensus size: 215
70736395 TTTCACATTC
* * *
70736405 ATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTC
1 ATCACATAGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA
70736470 GACCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
64 GACCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
70736534 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTC
129 ATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
70736599 ATCACATTGGCCATTCGGCCTT
194 ATCACATTGGCCATTCGGCCTT
*
70736621 ATCACATAGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 ATCACATAGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGA
* * *
70736686 CCTTATCACATATATATACACTTTCATATTCATCACATTGGCCATTCGGCCTTATCACATATATA
66 CCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
70736751 TACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
130 TACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
70736814 TATTCAAATA
Statistics
Matches: 183, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
214 44 0.24
216 139 0.76
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (215 bp):
ATCACATAGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGA
CCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
CACATTGGCCATTCGGCCTT
Found at i:70736672 original size:118 final size:119
Alignment explanation
Indices: 70736273--70736746 Score: 435
Period size: 118 Copynumber: 4.0 Consensus size: 119
70736263 ACATCGGCTG
70736273 TTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 TTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
*
70736337 TATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA---TA
66 TATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAGGCCA
* ** * * **
70736388 TATA--CACTT-TCAC-AT-TCAT-CACATTGGC-CATTCGGC-CTTATC-ACATATATATACAC
1 T-TAGGC-CTTATCACAATAT-ATACAC-TT-TCACATTCATCAC--ATCGGC-CAT-TAGGC-C
* * * * ** * * *
70736444 TT-TCACATTCATCACATTGGC-CATTCGACCTT-ATCACATATATACACTTTC-ACATTCATCA
56 TTATCACA-T-AT-ATA-T-ACACTTTC-ACATTCATCACAT-T-GGC-CATTCGGCCTT-ATCA
*
70736505 CATCGGCCA
111 CATAGGCCA
* *
70736514 TTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 TTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
70736579 ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAGGCCA
65 ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAGGCCA
*
70736634 TTCGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 TTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
*
70736698 TATATACACTTTCATATTCATCACATTGGCCATTCGGCCTTATCACATA
66 TATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
70736747 TATATACACT
Statistics
Matches: 281, Mismatches: 41, Indels: 71
0.72 0.10 0.18
Matches are distributed among these distances:
113 5 0.02
114 18 0.06
115 10 0.04
116 10 0.04
117 4 0.01
118 98 0.35
119 2 0.01
120 41 0.15
121 10 0.04
122 10 0.04
123 23 0.08
124 2 0.01
125 4 0.01
126 9 0.03
127 12 0.04
128 5 0.02
129 13 0.05
130 5 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (119 bp):
TTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
TATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAGGCCA
Found at i:70736681 original size:69 final size:70
Alignment explanation
Indices: 70736550--70736697 Score: 253
Period size: 69 Copynumber: 2.1 Consensus size: 70
70736540 TTTCACATTC
* * *
70736550 ATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTC
1 ATCACATAGGCCATTCGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTA
70736615 GGCCTT
65 GGCCTT
70736621 ATCACATAGGCCATTCGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAG
1 ATCACATAGGCCATTCGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAG
70736685 GCCTT
66 GCCTT
70736690 ATCACATA
1 ATCACATA
70736698 TATATACACT
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
69 48 0.65
71 26 0.35
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.32
Consensus pattern (70 bp):
ATCACATAGGCCATTCGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAG
GCCTT
Found at i:70744143 original size:11 final size:11
Alignment explanation
Indices: 70744127--70744155 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
70744117 GTGTTACATG
70744127 TCATTTAAGGT
1 TCATTTAAGGT
70744138 TCATTTAAGGT
1 TCATTTAAGGT
70744149 TCATTTA
1 TCATTTA
70744156 GGTATACAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (11 bp):
TCATTTAAGGT
Found at i:70748572 original size:18 final size:18
Alignment explanation
Indices: 70748549--70748585 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
70748539 CTTGGCCTAT
*
70748549 TGCAGTAACAGTAAACAG
1 TGCAGTAACAATAAACAG
70748567 TGCAGTAACAATAAACAG
1 TGCAGTAACAATAAACAG
70748585 T
1 T
70748586 ATGCAAGTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (18 bp):
TGCAGTAACAATAAACAG
Found at i:70748963 original size:27 final size:27
Alignment explanation
Indices: 70748901--70749106 Score: 222
Period size: 27 Copynumber: 7.7 Consensus size: 27
70748891 TACATCAAAT
* * *
70748901 AGGGTAAAACAATCATCTTA-C-CATGA
1 AGGGCAAAACAGTCATTTTACCACAT-A
* *
70748927 AGGTCAAAACAGTCATTTTACAACATA
1 AGGGCAAAACAGTCATTTTACCACATA
* **
70748954 AGGGCAAAACAATCATTTTACCTTATA
1 AGGGCAAAACAGTCATTTTACCACATA
* * * *
70748981 GGGGTAAAACAATCATTTTACCTCATA
1 AGGGCAAAACAGTCATTTTACCACATA
*
70749008 AGGGCAAAACAGTTATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCACATA
*
70749035 AGGGCAAAATAGTCATTTTACCACA-A
1 AGGGCAAAACAGTCATTTTACCACATA
*
70749061 A-GGCAAAACAGTCATTTTTCCACATA
1 AGGGCAAAACAGTCATTTTACCACATA
* *
70749087 AGAGCAAAATAGTCATTTTA
1 AGGGCAAAACAGTCATTTTA
70749107 TCGATTAAGG
Statistics
Matches: 151, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
25 21 0.14
26 20 0.13
27 107 0.71
28 3 0.02
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (27 bp):
AGGGCAAAACAGTCATTTTACCACATA
Found at i:70764327 original size:27 final size:27
Alignment explanation
Indices: 70764296--70764407 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
70764286 AGGAAGCGTC
*
70764296 CTGGTGGCTAC-GCCATAATTATCTGAT
1 CTGGTGGCT-CTGCCACAATTATCTGAT
* *
70764323 CTGGTGGCTCTGCCACAAATATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
70764350 CTAGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
70764378 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
70764404 CTGG
1 CTGG
70764408 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.08
27 52 0.72
28 14 0.19
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:70767934 original size:46 final size:45
Alignment explanation
Indices: 70767884--70768059 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
70767874 TGGTTAAGCA
70767884 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
70767930 TCCGAACTCGTTCAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
70767977 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
70768023 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70768060 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:70768040 original size:93 final size:93
Alignment explanation
Indices: 70767881--70768051 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
70767871 GGATGGTTAA
* *
70767881 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTCAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
70767946 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
70767974 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
70768039 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
70768052 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:70781843 original size:40 final size:41
Alignment explanation
Indices: 70781749--70781969 Score: 219
Period size: 40 Copynumber: 5.6 Consensus size: 41
70781739 TATTCGAATG
*
70781749 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTA-GTGACT
* * * *
70781790 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
* *
70781830 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGTTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
70781870 ATATCCGAGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * * *
70781910 ACATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGA-CT
70781949 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
70781970 ATTACTTGAG
Statistics
Matches: 148, Mismatches: 24, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
37 1 0.01
38 14 0.09
39 14 0.09
40 89 0.60
41 29 0.20
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:70789972 original size:40 final size:40
Alignment explanation
Indices: 70789849--70790069 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 40
70789839 TATTCGAATG
* * *
70789849 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * * *
70789890 ATA-ACGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
* * *
70789929 ATATCCGGGTTAAGACCCGAAGGCATTTGTGTTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* *
70789969 ATATCCAGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * *
70790009 ATATCC-GG-TAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
70790047 ACAT-CGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
70790070 CTTGTGCAAG
Statistics
Matches: 147, Mismatches: 28, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
37 1 0.01
38 30 0.20
39 22 0.15
40 91 0.62
41 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:70794030 original size:42 final size:43
Alignment explanation
Indices: 70793969--70794078 Score: 152
Period size: 43 Copynumber: 2.6 Consensus size: 43
70793959 GATTTAAGAT
*
70793969 TTACGTGTAAGACCATGTCTGGGACA-TCGGCATC-GTATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGT-GGCATCGGTATTTGA
* *
70794011 TTTCATGTAAGACCCTGTCTGGGACAGTGGCATCGGTATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGTGGCATCGGTATTTGA
* *
70794054 TTACATGTAAGACCACGTTTGGGAC
1 TTACATGTAAGACCATGTCTGGGAC
70794079 GTTGGTATTG
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
42 29 0.49
43 30 0.51
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACAGTGGCATCGGTATTTGA
Found at i:70798689 original size:32 final size:32
Alignment explanation
Indices: 70798628--70798718 Score: 87
Period size: 32 Copynumber: 2.8 Consensus size: 32
70798618 ACAAAGTGTG
**
70798628 TATATATGTGTAGTTGGATAAAGTTGAATGTC
1 TATATATGTGTAGTTGGATAAAGCCGAATGTC
*
70798660 TATATATGTGT-GATTGGATATAA-CCGAATGTG
1 TATATATGTGTAG-TTGGATA-AAGCCGAATGTC
* * * *
70798692 TATCTAGGTGTAGTTTGATATAGCCGA
1 TATATATGTGTAGTTGGATAAAGCCGA
70798719 TTGAGATGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
31 2 0.04
32 43 0.90
33 3 0.06
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (32 bp):
TATATATGTGTAGTTGGATAAAGCCGAATGTC
Found at i:70798928 original size:53 final size:52
Alignment explanation
Indices: 70798853--70799000 Score: 197
Period size: 53 Copynumber: 2.8 Consensus size: 52
70798843 TTTAAGGGAT
* *
70798853 GCACTAAGTGTGCGAATTTGATACTGAGCACTAAGTGTTCGAGTTGGATTTAA
1 GCACTAAGTGTGCG-ATTTGATACTGAGCACTAAGTGTGCGAGTTGGATCTAA
*
70798906 GCACTATGTGTGCGAGTTTGATACTGAGCACTAAGTGTGCGAGTTGGATCTAA
1 GCACTAAGTGTGCGA-TTTGATACTGAGCACTAAGTGTGCGAGTTGGATCTAA
* * * * *
70798959 GCACTACGTGTGTGAATTAATTTCTGAGCACTAAGTGTGCGA
1 GCACTAAGTGTGCGATTTGA-TACTGAGCACTAAGTGTGCGA
70799001 AATCAGTTAT
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 4 0.05
53 81 0.95
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (52 bp):
GCACTAAGTGTGCGATTTGATACTGAGCACTAAGTGTGCGAGTTGGATCTAA
Found at i:70798943 original size:27 final size:26
Alignment explanation
Indices: 70798853--70799000 Score: 145
Period size: 27 Copynumber: 5.6 Consensus size: 26
70798843 TTTAAGGGAT
*
70798853 GCACTAAGTGTGCGAATTTGATACTGA
1 GCACTAAGTGTGCGAGTTTGAT-CTGA
* * * *
70798880 GCACTAAGTGTTCGAGTTGGATTTAA
1 GCACTAAGTGTGCGAGTTTGATCTGA
*
70798906 GCACTATGTGTGCGAGTTTGATACTGA
1 GCACTAAGTGTGCGAGTTTGAT-CTGA
* *
70798933 GCACTAAGTGTGCGAGTTGGATCTAA
1 GCACTAAGTGTGCGAGTTTGATCTGA
* * * *
70798959 GCACTACGTGTGTGAATTAAT-TTCTGA
1 GCACTAAGTGTGCGAGTT--TGATCTGA
70798986 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
70799001 AATCAGTTAT
Statistics
Matches: 97, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
26 39 0.40
27 58 0.60
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (26 bp):
GCACTAAGTGTGCGAGTTTGATCTGA
Found at i:70799268 original size:52 final size:52
Alignment explanation
Indices: 70799212--70799324 Score: 201
Period size: 52 Copynumber: 2.2 Consensus size: 52
70799202 GGTGATCTAA
70799212 AGTGATGAATGGTTTTAATGGATGTATATTGAGGTAGTCAAATATAATTTAT
1 AGTGATGAATGGTTTTAATGGATGTATATTGAGGTAGTCAAATATAATTTAT
*
70799264 AGTGATGAATGGTTTTAATGGATGTATTTTGAGGTAGTCAAATATAATTTAT
1 AGTGATGAATGGTTTTAATGGATGTATATTGAGGTAGTCAAATATAATTTAT
*
70799316 AATG-TGAAT
1 AGTGATGAAT
70799325 AATATATATG
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
51 5 0.08
52 54 0.92
ACGTcount: A:0.35, C:0.02, G:0.23, T:0.41
Consensus pattern (52 bp):
AGTGATGAATGGTTTTAATGGATGTATATTGAGGTAGTCAAATATAATTTAT
Found at i:70808643 original size:50 final size:49
Alignment explanation
Indices: 70808470--70808705 Score: 278
Period size: 50 Copynumber: 4.7 Consensus size: 49
70808460 GCTATTGTGA
70808470 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGATCGTGTACCTGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTAC--T-A-CGTGTACCTGATAATT
* * * * *
70808523 GGTCGCATGTGTAGGACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAA-TT
* * **
70808573 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TTAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCT-GATAATT
70808623 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTAGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCT-GATAATT
* *
70808673 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
70808706 TGCGTACCAG
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
49 43 0.27
50 51 0.32
51 37 0.23
53 28 0.18
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAATT
Found at i:70808718 original size:49 final size:50
Alignment explanation
Indices: 70808469--70808718 Score: 270
Period size: 49 Copynumber: 4.9 Consensus size: 50
70808459 AGCTATTGTG
* *
70808469 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGATCGTGTACCTGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATG--C--GTACCAGATAATT
* * *
70808523 -GGTCGCATGTGTAGGACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT
* * * * * ** **
70808573 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
* * * *
70808623 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
*
70808673 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
70808719 GCTTCAGCTA
Statistics
Matches: 170, Mismatches: 24, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
49 52 0.31
50 49 0.29
51 37 0.22
53 32 0.19
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
Found at i:70810072 original size:49 final size:50
Alignment explanation
Indices: 70809992--70810237 Score: 262
Period size: 49 Copynumber: 4.9 Consensus size: 50
70809982 AGCTATTGTG
* * * *
70809992 AGGTCACGTGTGTAGTACTAAGAGCAAGCTACTACGTGTGCCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
70810042 -GGTCGCATGTGTAGTAATAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * **
70810092 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTCTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * *
70810142 AGGTCATGTGTGTAGTAATAAGTGCAGGCTATTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
70810192 A-GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
70810238 GCTTCGGCTA
Statistics
Matches: 158, Mismatches: 36, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
49 76 0.48
50 46 0.29
51 36 0.23
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:70813421 original size:40 final size:40
Alignment explanation
Indices: 70813364--70813559 Score: 248
Period size: 40 Copynumber: 4.9 Consensus size: 40
70813354 CGAATACACG
* * * * *
70813364 TCACCAGCATGATTGCTCTTCGGGACCTAGCCTGGACATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * ** * *
70813404 ACACCAGCACGAATGCTCTTCGGGTTTTAGCACGAATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
70813444 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
70813484 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
70813524 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
70813560 CATCATTCAA
Statistics
Matches: 136, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 136 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:70813904 original size:29 final size:29
Alignment explanation
Indices: 70813865--70813943 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
70813855 CTTAATAATC
*
70813865 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
70813895 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
70813924 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70813944 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:70813986 original size:43 final size:43
Alignment explanation
Indices: 70813925--70814070 Score: 292
Period size: 43 Copynumber: 3.4 Consensus size: 43
70813915 TGCATTTCAA
70813925 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
70813968 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
70814011 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
70814054 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
70814071 TGAAAACCAA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:70815973 original size:37 final size:37
Alignment explanation
Indices: 70815923--70816001 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70815913 TTATTACGAA
* * *
70815923 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
70815960 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
70815997 GTCTT
1 GTCTT
70816002 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:70816206 original size:47 final size:47
Alignment explanation
Indices: 70816163--70816492 Score: 564
Period size: 47 Copynumber: 7.1 Consensus size: 47
70816153 TTGGCCACTC
* * *
70816163 GGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
70816210 GGCCTTAT--CACATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
70816255 GGCCTTATCACACATAT-CACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
70816301 GGCC-TATCACACATATACA-TTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
70816346 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
70816393 GGCCCTATCACACATATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
70816440 GGCCTTATCACA-ATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
70816486 GGCCTTA
1 GGCCTTA
70816493 CTATCATTTC
Statistics
Matches: 269, Mismatches: 9, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
45 84 0.31
46 90 0.33
47 95 0.35
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
Found at i:70816240 original size:45 final size:46
Alignment explanation
Indices: 70816176--70816492 Score: 518
Period size: 46 Copynumber: 6.9 Consensus size: 46
70816166 CTTGTCACAT
*
70816176 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT-CAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATACAC
70816221 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT-ACAC
70816268 ATAT-CACTTTCACATTCATCACATCGGCTATTAGGCC-TATCACAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT-ACAC
*
70816313 ATATACA-TTTCACATTCATCACGTCGGCTATTAGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT-ACAC
*
70816359 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCCTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT-ACAC
*
70816406 ATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTAT-CAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATACAC
70816451 AATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 -ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
70816493 CTATCATTTC
Statistics
Matches: 259, Mismatches: 7, Indels: 11
0.94 0.03 0.04
Matches are distributed among these distances:
45 85 0.33
46 90 0.35
47 84 0.32
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (46 bp):
ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATACAC
Found at i:70819983 original size:39 final size:39
Alignment explanation
Indices: 70819940--70820093 Score: 154
Period size: 39 Copynumber: 4.0 Consensus size: 39
70819930 GAATACACGT
* *
70819940 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGACATA
* * * *
70819979 CACCAGCA-CAATGCTCTTCGGG-TTTAGCACGGATATA
1 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGACATA
* * **
70820016 TCACTAGCACGAATGCTCTTCGAAACTTAG-CCGGATACAT-
1 -CACCAGCATGAATGCTCTTCGGGACTTAGCCCGG--ACATA
*
70820056 CACTAGCATGAATGCTCTTCGGGACTTAGCCCGGACAT
1 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGACAT
70820094 CATTCAAATA
Statistics
Matches: 93, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
37 11 0.12
38 23 0.25
39 48 0.52
40 8 0.09
41 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGACATA
Found at i:70820432 original size:29 final size:29
Alignment explanation
Indices: 70820393--70820471 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
70820383 CTTAATAATC
*
70820393 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
70820423 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
70820452 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70820472 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:70820514 original size:43 final size:43
Alignment explanation
Indices: 70820453--70820555 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
70820443 TGCATTTCAA
70820453 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
70820496 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
70820539 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
70820556 TGAAACCAAC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:70822450 original size:37 final size:37
Alignment explanation
Indices: 70822400--70822478 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70822390 TTATTACGAA
* * *
70822400 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
70822437 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
70822474 GTCTT
1 GTCTT
70822479 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:70822684 original size:47 final size:47
Alignment explanation
Indices: 70822641--70823013 Score: 572
Period size: 47 Copynumber: 8.1 Consensus size: 47
70822631 TTGGCCACTC
* * *
70822641 GGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
70822688 GGCCTTATCACATATATACACTTTCACATTCA-CACATC-GCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
70822733 GGCC-TAT--CAC----ACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
70822773 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
* *
70822820 GGCCCTATCACACATATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
70822867 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGC--TTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
*
70822912 GGCC-TATCACACATATATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACAC--ATATACACTTTCACATTCATCACATCGGCTATTA
*
70822960 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
70823007 GGCCTTA
1 GGCCTTA
70823014 CTATCATTTC
Statistics
Matches: 302, Mismatches: 10, Indels: 28
0.89 0.03 0.08
Matches are distributed among these distances:
38 15 0.05
39 6 0.02
40 11 0.04
41 3 0.01
42 2 0.01
43 3 0.01
44 11 0.04
45 17 0.06
46 34 0.11
47 185 0.61
48 7 0.02
49 8 0.03
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
Found at i:70822897 original size:179 final size:181
Alignment explanation
Indices: 70822648--70823010 Score: 572
Period size: 187 Copynumber: 2.0 Consensus size: 181
70822638 CTCGGCCTTG
* *
70822648 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
70822713 ACATTCA-CACATC-GCTATTAGGCCTAT-CAC-ACACTTTCACATTCATCACATCGGCTATTAG
66 ACATTCATCACATCGGC--TTAGGCCTATACACAACACTTTCACATTCATCACATCGGCTATTAG
*
70822774 GCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCCTA
129 GCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTA
* *
70822827 TCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
*
70822892 ACATTCATCACATCGGCTTAGGCCTATCACACATATATACACTTTCACATTCATCACGTCGGCTA
66 ACATTCATCACATCGGCTTAGGCCTAT-ACAC----A-ACACTTTCACATTCATCACATCGGCTA
70822957 TTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
125 TTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
70823011 TTACTATCAT
Statistics
Matches: 168, Mismatches: 6, Indels: 12
0.90 0.03 0.06
Matches are distributed among these distances:
179 78 0.46
180 6 0.04
181 5 0.03
187 79 0.47
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (181 bp):
TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
ACATTCATCACATCGGCTTAGGCCTATACACAACACTTTCACATTCATCACATCGGCTATTAGGC
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTA
Found at i:70822958 original size:140 final size:136
Alignment explanation
Indices: 70822649--70823013 Score: 564
Period size: 140 Copynumber: 2.7 Consensus size: 136
70822639 TCGGCCTTGT
* *
70822649 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCA
70822714 CATTCA-CACATC-GCTATTAGGCC-TATCACACACTTTCACATTCATCACATCGGCTATTAGGC
66 CATTCATCACATCGGCTATTAGGCCTTATCACACACTTTCACATTCATCACATCGGC-ATTAGGC
70822776 CTTATCA
130 CTTATCA
*
70822783 CAC--ATATACACTTTCACATTCATCACATCGGCTATTAGGCCCTATCACACATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCA
*
70822846 CATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGC-T
66 CATTCATCACATCGGCTATTAGGCCTTAT--CAC----ACACTTTCACATTCATCACATCGGCAT
70822910 TAGGCC-TATCA
125 TAGGCCTTATCA
*
70822921 CACATATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCA
1 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCA
*
70822986 CATTCATCACATCGGCCATTAGGCCTTA
66 CATTCATCACATCGGCTATTAGGCCTTA
70823014 CTATCATTTC
Statistics
Matches: 212, Mismatches: 8, Indels: 16
0.90 0.03 0.07
Matches are distributed among these distances:
132 63 0.30
133 5 0.02
134 14 0.07
135 3 0.01
137 3 0.01
138 8 0.04
139 7 0.03
140 84 0.40
141 25 0.12
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (136 bp):
CACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCA
CATTCATCACATCGGCTATTAGGCCTTATCACACACTTTCACATTCATCACATCGGCATTAGGCC
TTATCA
Found at i:70827454 original size:40 final size:40
Alignment explanation
Indices: 70827136--70827442 Score: 466
Period size: 40 Copynumber: 7.8 Consensus size: 40
70827126 GAGAATTGAG
*
70827136 AGTGATATATCCGGGTACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGG--CTAAGTCCCGAAGAGCATTCGTGCT
70827178 AGTGA--TATCC-GGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
70827214 AGTGATGTATCC-GGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
70827252 AGTGATGTATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
70827291 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
70827331 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
70827371 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * **
70827411 GGTGTTATATCCGGGCTCGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
70827443 ATCATGCTGG
Statistics
Matches: 252, Mismatches: 9, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
36 23 0.09
37 6 0.02
38 51 0.20
39 32 0.13
40 135 0.54
42 5 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:70831514 original size:47 final size:47
Alignment explanation
Indices: 70831460--70831653 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
70831450 TTAGGATTTT
** * *
70831460 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
70831507 ATGTGATGAATGTGAACATGCACATATGTGAGAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
70831554 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
70831601 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
70831648 ATGTGA
1 ATGTGA
70831654 AATATGTATG
Statistics
Matches: 127, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 127 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:70831559 original size:22 final size:23
Alignment explanation
Indices: 70831492--70831563 Score: 69
Period size: 23 Copynumber: 3.1 Consensus size: 23
70831482 TATATGAGAT
70831492 AAGGCCGAATGGCCAATGTGATG
1 AAGGCCGAATGGCCAATGTGATG
* *
70831515 AATG-TGAACAT-GCACATATGTGA-G
1 AAGGCCG-A-ATGGC-CA-ATGTGATG
70831539 AAGGCCGAATGGCCAATGTGATG
1 AAGGCCGAATGGCCAATGTGATG
70831562 AA
1 AA
70831564 TGTGAGCATG
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
22 7 0.18
23 13 0.34
24 11 0.29
25 7 0.18
ACGTcount: A:0.35, C:0.15, G:0.31, T:0.19
Consensus pattern (23 bp):
AAGGCCGAATGGCCAATGTGATG
Found at i:70831685 original size:48 final size:48
Alignment explanation
Indices: 70831624--70831759 Score: 202
Period size: 50 Copynumber: 2.8 Consensus size: 48
70831614 GAACATGCAT
70831624 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* * *
70831672 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGC
*
70831722 ATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
70831760 GGCGATGTGC
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
47 1 0.01
48 32 0.41
49 4 0.05
50 40 0.51
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:70831774 original size:50 final size:50
Alignment explanation
Indices: 70831618--70831780 Score: 192
Period size: 50 Copynumber: 3.3 Consensus size: 50
70831608 GAATATGAAC
*
70831618 ATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
* *
70831668 ATGC--ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGAT
* * *
70831718 AT--GTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTAGGCGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
70831766 GTGCGTATATTGTGG
1 ATGCGTATA-TGTGG
70831781 CCGAACGACC
Statistics
Matches: 96, Mismatches: 8, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
47 1 0.01
48 37 0.39
49 4 0.04
50 48 0.50
51 6 0.06
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (50 bp):
ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
Found at i:70832003 original size:36 final size:37
Alignment explanation
Indices: 70831906--70832011 Score: 178
Period size: 37 Copynumber: 2.9 Consensus size: 37
70831896 GAAATATATT
*
70831906 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
70831943 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
* *
70831980 CGGGTAAGA-CCGATAACTTCGTGTGGAGATTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTT
70832012 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
36 21 0.32
37 45 0.68
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
Found at i:70836130 original size:25 final size:25
Alignment explanation
Indices: 70836096--70836148 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
70836086 TGCACCACAA
70836096 GGCCAGAGACACATCCGTGTGCCTT
1 GGCCAGAGACACATCCGTGTGCCTT
* * * *
70836121 GGCCGGAGACACGTCTGTTTGCCTT
1 GGCCAGAGACACATCCGTGTGCCTT
70836146 GGC
1 GGC
70836149 TATGGGAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.15, C:0.30, G:0.32, T:0.23
Consensus pattern (25 bp):
GGCCAGAGACACATCCGTGTGCCTT
Found at i:70837313 original size:47 final size:47
Alignment explanation
Indices: 70837256--70837413 Score: 172
Period size: 47 Copynumber: 3.4 Consensus size: 47
70837246 ACCTTGGCAT
* *
70837256 GTAGCCAAATCAAGGTATCTTCTCTCAAAAAACCTAAATCATGGCTC
1 GTAGCCAAATCAAGGTAACTTCTCTCAAAATACCTAAATCATGGCTC
* ** * * * ** * * * * *
70837303 GAAGAAAAATCAAGATAACTTATCCCGGAGTACTTATACCATGGCCC
1 GTAGCCAAATCAAGGTAACTTCTCTCAAAATACCTAAATCATGGCTC
*
70837350 GTAGCCAAATCAAGGTAACTCCTCTCAAAATACCTAAATCATGGCTC
1 GTAGCCAAATCAAGGTAACTTCTCTCAAAATACCTAAATCATGGCTC
70837397 GTAGCCAAATCAAGGTA
1 GTAGCCAAATCAAGGTA
70837414 TTATTTGCAC
Statistics
Matches: 82, Mismatches: 29, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
47 82 1.00
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.23
Consensus pattern (47 bp):
GTAGCCAAATCAAGGTAACTTCTCTCAAAATACCTAAATCATGGCTC
Found at i:70837407 original size:94 final size:94
Alignment explanation
Indices: 70837210--70837410 Score: 303
Period size: 94 Copynumber: 2.1 Consensus size: 94
70837200 CCATGGACCT
* * * * *
70837210 TAGCCAAATCAAGATAACTTATTCTGGAGTACTTATACCTTGGCATGTAGCCAAATCAAGGTATC
1 TAGCCAAATCAAGATAACTTATCCCGGAGTACTTATACCATGGCACGTAGCCAAATCAAGGTAAC
*
70837275 TTCTCTCAAAAAACCTAAATCATGGCTCG
66 TCCTCTCAAAAAACCTAAATCATGGCTCG
* ** *
70837304 AAGAAAAATCAAGATAACTTATCCCGGAGTACTTATACCATGGCCCGTAGCCAAATCAAGGTAAC
1 TAGCCAAATCAAGATAACTTATCCCGGAGTACTTATACCATGGCACGTAGCCAAATCAAGGTAAC
*
70837369 TCCTCTCAAAATACCTAAATCATGGCTCG
66 TCCTCTCAAAAAACCTAAATCATGGCTCG
70837398 TAGCCAAATCAAG
1 TAGCCAAATCAAG
70837411 GTATTATTTG
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (94 bp):
TAGCCAAATCAAGATAACTTATCCCGGAGTACTTATACCATGGCACGTAGCCAAATCAAGGTAAC
TCCTCTCAAAAAACCTAAATCATGGCTCG
Found at i:70838572 original size:13 final size:13
Alignment explanation
Indices: 70838554--70838578 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70838544 ACAAACGATA
70838554 AAATTTTCACACG
1 AAATTTTCACACG
70838567 AAATTTTCACAC
1 AAATTTTCACAC
70838579 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:70845568 original size:25 final size:25
Alignment explanation
Indices: 70845539--70845590 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
70845529 TAAACAAATT
70845539 TTATGCAATATCAAAGCATATAACA
1 TTATGCAATATCAAAGCATATAACA
70845564 TTATGCAATATCAAAGCATATAACA
1 TTATGCAATATCAAAGCATATAACA
70845589 TT
1 TT
70845591 CATTTATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (25 bp):
TTATGCAATATCAAAGCATATAACA
Found at i:70856396 original size:25 final size:25
Alignment explanation
Indices: 70856367--70856443 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
70856357 CTAATGCCGA
70856367 TGTGATGAATGTGAAAGTGTATATG
1 TGTGATGAATGTGAAAGTGTATATG
* *** ***
70856392 TGTGAT-AAGGCCTAA-TGCCGA--
1 TGTGATGAATGTGAAAGTGTATATG
70856413 TGTGATGAATGTGAAAGTGTATATG
1 TGTGATGAATGTGAAAGTGTATATG
70856438 TGTGAT
1 TGTGAT
70856444 AGGCCTAATA
Statistics
Matches: 34, Mismatches: 14, Indels: 8
0.61 0.25 0.14
Matches are distributed among these distances:
21 6 0.18
22 5 0.15
23 6 0.18
24 5 0.15
25 12 0.35
ACGTcount: A:0.30, C:0.05, G:0.31, T:0.34
Consensus pattern (25 bp):
TGTGATGAATGTGAAAGTGTATATG
Found at i:70856547 original size:93 final size:93
Alignment explanation
Indices: 70856353--70856722 Score: 672
Period size: 93 Copynumber: 4.0 Consensus size: 93
70856343 AATGATAGTA
70856353 AGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAAT-GCCGATGT
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGT
70856416 GATGAATGTGAAAGTGTATATGTGTGAT
66 GATGAATGTGAAAGTGTATATGTGTGAT
*
70856444 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGT
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGT
70856509 GATGAATGTGAAAGTGTATATGTGTGAT
66 GATGAATGTGAAAGTGTATATGTGTGAT
70856537 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGT
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGT
*
70856602 GATGAATGTGAAAGTGTATGTGTGTGAT
66 GATGAATGTGAAAGTGTATATGTGTGAT
* *
70856630 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 -AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
*
70856695 TGATGAATGTGAAAGTGTATATATGTGA
65 TGATGAATGTGAAAGTGTATATGTGTGA
70856723 CAAGGCCGAG
Statistics
Matches: 269, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
91 9 0.03
92 46 0.17
93 126 0.47
94 88 0.33
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (93 bp):
AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGT
GATGAATGTGAAAGTGTATATGTGTGAT
Found at i:70856758 original size:47 final size:47
Alignment explanation
Indices: 70856351--70856729 Score: 676
Period size: 47 Copynumber: 8.1 Consensus size: 47
70856341 GAAATGATAG
70856351 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
70856397 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
70856443 T-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
70856489 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
70856536 T-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
70856582 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
70856629 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
70856676 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
70856723 CAAGGCC
1 TAAGGCC
70856730 GAGTGGCCAA
Statistics
Matches: 323, Mismatches: 7, Indels: 5
0.96 0.02 0.01
Matches are distributed among these distances:
45 9 0.03
46 128 0.40
47 186 0.58
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:70856948 original size:37 final size:37
Alignment explanation
Indices: 70856892--70856970 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70856882 CCGAGCTCTA
* * *
70856892 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
70856929 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70856966 AAGAC
1 AAGAC
70856971 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70858860 original size:43 final size:43
Alignment explanation
Indices: 70858812--70858914 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
70858802 TTGGTTTTCA
70858812 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
70858855 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
70858898 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
70858915 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:70858931 original size:29 final size:29
Alignment explanation
Indices: 70858896--70858969 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
70858886 GTTGTGAGAT
* *
70858896 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
70858925 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
70858954 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70858970 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:70859345 original size:39 final size:40
Alignment explanation
Indices: 70859281--70859434 Score: 186
Period size: 39 Copynumber: 3.9 Consensus size: 40
70859271 TTGAATGATG
*
70859281 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
70859321 TCCGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * * * *
70859360 TCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
70859399 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
70859435 CGTGTATTCG
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 64 0.66
40 33 0.34
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:70863146 original size:136 final size:139
Alignment explanation
Indices: 70862894--70863211 Score: 561
Period size: 136 Copynumber: 2.3 Consensus size: 139
70862884 GAAATGATAG
70862894 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA--TGTGATAAGGCCTAATAGCCGAT
*
70862959 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
64 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG
70863024 TATATGTGTGA
129 TATATGTGTGA
*
70863035 TAAGGCCTAATAGCCGACGTGATGAATGTGAAA-TGTATATGTGAT-AGGCCTAATAGCCGATGT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATAGCCGATGT
*
70863098 GATGAAT-TGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTTAAAGTGTA
66 GATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTA
*
70863162 TGTGTGTGA
131 TATGTGTGA
70863171 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
70863212 ATGTGACAAG
Statistics
Matches: 171, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
136 95 0.56
137 32 0.19
138 6 0.04
140 6 0.04
141 32 0.19
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (139 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATAGCCGATGT
GATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTA
TATGTGTGA
Found at i:70863247 original size:47 final size:47
Alignment explanation
Indices: 70862894--70863224 Score: 573
Period size: 47 Copynumber: 7.1 Consensus size: 47
70862884 GAAATGATAG
70862894 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
70862941 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
70862988 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
70863035 TAAGGCCTAATAGCCGACGTGATGAATGTGAAA-TGTATA--TGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
70863079 T-AGGCCTAATAGCCGATGTGATGAAT-TGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * *
70863124 TAAGGCCTAATAGCCGACGTGATGAATGTTAAAGTGTATGTGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
70863171 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
70863218 CAAGGCC
1 TAAGGCC
70863225 GAGTGGCCAA
Statistics
Matches: 269, Mismatches: 10, Indels: 10
0.93 0.03 0.03
Matches are distributed among these distances:
42 5 0.02
43 30 0.11
44 6 0.02
45 6 0.02
46 30 0.11
47 192 0.71
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:70863264 original size:94 final size:94
Alignment explanation
Indices: 70862894--70863268 Score: 571
Period size: 94 Copynumber: 4.0 Consensus size: 94
70862884 GAAATGATAG
*
70862894 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
*
70862959 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
70862988 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
70863053 GTGATGAATGTGAAA-TG--TATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
70863079 T-AGGCCTAATAGCCGATGTGATGAAT-TGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
* * *
70863142 GTGATGAATGTTAAAGTGTATGTGTGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
70863171 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAAC
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
* * * * *
70863236 GTAATGGATGTGGAAGTGCATAAATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
70863265 TAAG
1 TAAG
70863269 TCCCGAAAGG
Statistics
Matches: 257, Mismatches: 19, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
89 51 0.20
90 27 0.11
91 9 0.04
92 8 0.03
93 27 0.11
94 135 0.53
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (94 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:70863443 original size:37 final size:37
Alignment explanation
Indices: 70863387--70863465 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70863377 CCGAGCTCTA
* * *
70863387 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
70863424 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70863461 AAGAC
1 AAGAC
70863466 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70869409 original size:40 final size:40
Alignment explanation
Indices: 70869377--70869686 Score: 498
Period size: 40 Copynumber: 7.8 Consensus size: 40
70869367 CCAGCATGAT
* * * *
70869377 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70869417 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70869457 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
70869497 TGCT-TCCCGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70869536 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
70869576 TGCTCTTCGGGACTTAG-CCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70869615 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70869655 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
70869687 CTCAATTCTC
Statistics
Matches: 256, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
39 76 0.30
40 180 0.70
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:70869539 original size:79 final size:80
Alignment explanation
Indices: 70869377--70869686 Score: 464
Period size: 79 Copynumber: 3.9 Consensus size: 80
70869367 CCAGCATGAT
* * * * *
70869377 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCT-TCGGAACTTAGCCCGGAT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTCCCGG-ACTTAGCCCGGAT
70869441 ACATCACTAGCACGAA
65 ACATCACTAGCACGAA
* *
70869457 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCT-TCCCGGACTTAGTCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTCCCGGACTTAGCCCGGATA
70869521 CATCACTAGCACGAA
66 CATCACTAGCACGAA
* * *
70869536 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTCCCGGACTTAGCCCGGATA
70869600 CATCACTAGCACGAA
66 CATCACTAGCACGAA
* * *
70869615 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTCCCGGACTTAGCCCGGATA
*
70869680 TATCACT
66 CATCACT
70869687 CTCAATTCTC
Statistics
Matches: 215, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
79 150 0.70
80 65 0.30
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTCCCGGACTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:70869628 original size:119 final size:120
Alignment explanation
Indices: 70869377--70869686 Score: 516
Period size: 119 Copynumber: 2.6 Consensus size: 120
70869367 CCAGCATGAT
* * * *
70869377 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
70869442 CATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* * * * *
70869497 TGCT-TCCCGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
70869561 CATCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
70869615 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
70869680 TATCACT
66 CATCACT
70869687 CTCAATTCTC
Statistics
Matches: 174, Mismatches: 15, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
118 26 0.15
119 144 0.83
120 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (120 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
CATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
Found at i:70871076 original size:37 final size:36
Alignment explanation
Indices: 70870955--70871094 Score: 239
Period size: 37 Copynumber: 3.9 Consensus size: 36
70870945 AGCTCAGACG
* *
70870955 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGAC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
70870991 AAATCTCCACACGTAGT-ATCGGGTCTTACCC-GAC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
70871025 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
70871061 ATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 A-AATCTCCACACGTAGTCATCGGGTCTTACCCG
70871095 AATATATTTC
Statistics
Matches: 100, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
34 20 0.20
35 28 0.28
36 20 0.20
37 32 0.32
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.24
Consensus pattern (36 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
Found at i:70871366 original size:48 final size:49
Alignment explanation
Indices: 70871240--70871376 Score: 206
Period size: 50 Copynumber: 2.8 Consensus size: 49
70871230 GCACATCGCC
*
70871240 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* * *
70871290 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAA
70871338 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
70871377 TGCATGTTCA
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
48 35 0.45
49 2 0.03
50 41 0.53
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:70871408 original size:47 final size:47
Alignment explanation
Indices: 70871346--70871539 Score: 264
Period size: 47 Copynumber: 4.1 Consensus size: 47
70871336 CATACATATT
* * *
70871346 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
* * * *
70871393 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
70871440 TCACATTGGCCATTCGGCCTT-CTCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTAC-CACATATATGCATGTTCACATTCA
* * * **
70871487 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
70871534 TCACAT
1 TCACAT
70871540 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
Found at i:70874309 original size:73 final size:73
Alignment explanation
Indices: 70874188--70874323 Score: 186
Period size: 73 Copynumber: 1.9 Consensus size: 73
70874178 CATGTTTCGT
* * * *
70874188 TTGGACTAGTTCTTAGGAGCAATTGGCGTGTTATCGGGTGGTTAAGCTCTTATGAGCATTTGGCG
1 TTGGACTAGCTCTTAGAAGCAATTGGCGTGTTATCAGGTGGATAAGCTCTTATGAGCATTTGGCG
70874253 TCTTTAGG
66 TCTTTAGG
* *
70874261 TTGGACTAGCTCTT-GAAAGCAATTGGTC-TGTTATCAGGTGGATGAGCTCTTATGTGCATTTGG
1 TTGGACTAGCTCTTAG-AAGCAATTGG-CGTGTTATCAGGTGGATAAGCTCTTATGAGCATTTGG
70874324 TGTGTTTTCA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
72 1 0.02
73 53 0.96
74 1 0.02
ACGTcount: A:0.19, C:0.14, G:0.30, T:0.37
Consensus pattern (73 bp):
TTGGACTAGCTCTTAGAAGCAATTGGCGTGTTATCAGGTGGATAAGCTCTTATGAGCATTTGGCG
TCTTTAGG
Found at i:70874633 original size:5 final size:6
Alignment explanation
Indices: 70874619--70874674 Score: 51
Period size: 6 Copynumber: 8.7 Consensus size: 6
70874609 AAAGGTTAGA
*
70874619 TTTTAT TTTTAT TTTTAT TTGTT-T TGCTTAT TTTTAT TTTTGAAGT TTTTAT
1 TTTTAT TTTTAT TTTTAT TT-TTAT T-TTTAT TTTTAT TTTT--A-T TTTTAT
70874671 TTTT
1 TTTT
70874675 TGATATAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
6 31 0.74
7 5 0.12
8 1 0.02
9 5 0.12
ACGTcount: A:0.14, C:0.02, G:0.07, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:70874668 original size:25 final size:25
Alignment explanation
Indices: 70874621--70874668 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
70874611 AGGTTAGATT
**
70874621 TTATTTTTATTTTTATTTGTTTTGC
1 TTATTTTTATTTTTAAGTGTTTTGC
70874646 TTATTTTTATTTTTGAAGT-TTTT
1 TTATTTTTATTTTT-AAGTGTTTT
70874669 ATTTTTTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.15, C:0.02, G:0.08, T:0.75
Consensus pattern (25 bp):
TTATTTTTATTTTTAAGTGTTTTGC
Found at i:70874989 original size:23 final size:20
Alignment explanation
Indices: 70874946--70874990 Score: 54
Period size: 23 Copynumber: 2.1 Consensus size: 20
70874936 ACCTCTTCTC
*
70874946 TTCAATTTTTGATTTGTTAA
1 TTCAATTTTTGATTTGATAA
70874966 TTCAATTTTGTGGTATTTGATAA
1 TTCAATTTT-T-G-ATTTGATAA
70874989 TT
1 TT
70874991 TCGAGTGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 1 0.05
22 1 0.05
23 10 0.48
ACGTcount: A:0.24, C:0.04, G:0.13, T:0.58
Consensus pattern (20 bp):
TTCAATTTTTGATTTGATAA
Found at i:70879046 original size:48 final size:49
Alignment explanation
Indices: 70878940--70879071 Score: 151
Period size: 48 Copynumber: 2.7 Consensus size: 49
70878930 GCACATTAAA
* * * * * *
70878940 GTCGATGCCGTGTCCCAAATAGGTCTTACACTGACTTTCATATATCGAG
1 GTCGATGCCATGTCCCAGACAAGCCTTACACTGACTCTCATATATCGAG
* *
70878989 GTCGATGCCATGTCTCAGACAAGCCTTACACTG-CTCTCATCTATCG-G
1 GTCGATGCCATGTCCCAGACAAGCCTTACACTGACTCTCATATATCGAG
* *
70879036 TGTCGATGCCATGTCCCAGACAGGTCTTACACTGAC
1 -GTCGATGCCATGTCCCAGACAAGCCTTACACTGAC
70879072 ACACAACAAG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
47 1 0.01
48 41 0.59
49 28 0.40
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAAGCCTTACACTGACTCTCATATATCGAG
Found at i:70885351 original size:14 final size:15
Alignment explanation
Indices: 70885314--70885357 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
70885304 GAAGCCCAGA
70885314 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
70885329 ATAAAGAAATTCATG
1 ATAAAGAAATCCAAG
70885344 AT-AAGAAAATCCAA
1 ATAAAG-AAATCCAA
70885358 TTTACAACAC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 3 0.12
15 21 0.88
ACGTcount: A:0.59, C:0.11, G:0.11, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:70892640 original size:11 final size:11
Alignment explanation
Indices: 70892624--70892650 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
70892614 TAGAAATTAG
70892624 TTTGTGAAACT
1 TTTGTGAAACT
70892635 TTTGTGAAACT
1 TTTGTGAAACT
70892646 TTTGT
1 TTTGT
70892651 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Done.