Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 215 of 352
Found at i:70894181 original size:92 final size:92
Alignment explanation
Indices: 70894045--70894238 Score: 286
Period size: 92 Copynumber: 2.1 Consensus size: 92
70894035 TTGATTTTAG
* *
70894045 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
*
70894109 TAT-TAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
70894136 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
70894201 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
70894229 CAAATTCATA
1 TAAATTCATA
70894239 AACTATAATC
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 17 0.18
92 43 0.46
93 30 0.32
94 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:70894286 original size:48 final size:52
Alignment explanation
Indices: 70894216--70894314 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
70894206 AATAATTATT
70894216 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
70894264 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
70894315 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:70894296 original size:17 final size:17
Alignment explanation
Indices: 70894271--70894304 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
70894261 ATAATTTTAA
*
70894271 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
70894288 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
70894305 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:70894321 original size:17 final size:16
Alignment explanation
Indices: 70894276--70894323 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
70894266 TTTAAATTTT
70894276 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
70894293 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
70894307 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
70894324 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:70894395 original size:18 final size:17
Alignment explanation
Indices: 70894364--70894398 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
70894354 ATTATTAAGA
70894364 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
70894381 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
70894399 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:70894464 original size:129 final size:130
Alignment explanation
Indices: 70894311--70894544 Score: 416
Period size: 129 Copynumber: 1.8 Consensus size: 130
70894301 ATATTAGTTA
*
70894311 TAATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* *
70894376 TATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
*
70894441 TAATAATA-ATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
*
70894505 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
70894545 TAAATATGAT
Statistics
Matches: 99, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
129 92 0.93
130 7 0.07
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.49
Consensus pattern (130 bp):
TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
Found at i:70894521 original size:18 final size:17
Alignment explanation
Indices: 70894493--70894527 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
70894483 ATTATTAAGA
*
70894493 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
70894510 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
70894528 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:70894648 original size:124 final size:127
Alignment explanation
Indices: 70894502--70894732 Score: 396
Period size: 124 Copynumber: 1.8 Consensus size: 127
70894492 AATTTTATTA
* *
70894502 AATTATATATTTTAATTAAAATATATTTAATAGTAATTATGTTTAAATATGATTAAATTATTTAT
1 AATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAAATATGATTAAATTATTTAT
70894567 TATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTACCAAAACAAATTTCTGCT
66 TATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTACCAAAACAAATTTCTGCT
70894626 AATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAAATATGATTAAATTATTTAT
1 AATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAAATATGATTAAATTATTTAT
*
70894691 TTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 TATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
70894733 CAATAATCAT
Statistics
Matches: 99, Mismatches: 3, Indels: 5
0.93 0.03 0.05
Matches are distributed among these distances:
124 69 0.70
125 2 0.02
128 23 0.23
129 5 0.05
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (127 bp):
AATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAAATATGATTAAATTATTTAT
TATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTACCAAAACAAATTTCTGCT
Found at i:70894862 original size:44 final size:45
Alignment explanation
Indices: 70894813--70894907 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
70894803 TTACACCTCT
* *
70894813 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
70894857 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
70894902 ATTACA
1 ATTACA
70894908 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:70894907 original size:16 final size:16
Alignment explanation
Indices: 70894888--70894955 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
70894878 GATTTGCTAT
* *
70894888 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
70894904 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
70894920 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
70894936 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
70894952 TACA
1 TACA
70894956 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:70902315 original size:40 final size:40
Alignment explanation
Indices: 70902260--70902443 Score: 255
Period size: 40 Copynumber: 4.6 Consensus size: 40
70902250 TCGAATGATA
* * *
70902260 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCCAGTGACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
70902300 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
70902340 TTCGGGCAAAGTCACGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
**
70902379 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
70902421 T-CGGGCTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70902444 CGAGTGAGTA
Statistics
Matches: 128, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 2 0.02
40 123 0.96
41 1 0.01
42 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:70902395 original size:80 final size:80
Alignment explanation
Indices: 70902257--70902478 Score: 263
Period size: 80 Copynumber: 2.8 Consensus size: 80
70902247 TATTCGAATG
* * * *
70902257 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCCAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGC
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
* **
70902321 ATTTGTGTGAGTTACT
65 ATTTGTGCGAACTACT
* *
70902337 A-ATTTCGGGCAAAGTCACGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
1 ATA-TTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
70902401 ATTTGTGCGAACTACT
65 ATTTGTGCGAACTACT
* * * * *
70902417 ATATTCGGGCTAAGTCCCGAAGGCATTCGAGTGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
70902479 TACTTGGTTT
Statistics
Matches: 122, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
79 17 0.14
80 103 0.84
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAACTACT
Found at i:70902459 original size:40 final size:39
Alignment explanation
Indices: 70902257--70902478 Score: 234
Period size: 40 Copynumber: 5.6 Consensus size: 39
70902247 TATTCGAATG
* * *
70902257 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCCAGTGACT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACT
*
70902297 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATATT-CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACT
* *
70902337 A-ATTTCGGGCAAAGTCACGAAGGCATTTGTGCGAGTTACT
1 ATA-TTCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACT
* *
70902377 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACT
* * *
70902417 ATATTCGGGCTAAGTCCCGAAGGCATTCGAGTGAGTAGCT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CT
* * *
70902457 ATA-TCCGGTTAAATCCCGAAGG
1 ATATTCGGGCTAAGTCCCGAAGG
70902479 TACTTGGTTT
Statistics
Matches: 157, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 21 0.13
40 131 0.83
41 5 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACT
Found at i:70910390 original size:40 final size:40
Alignment explanation
Indices: 70910299--70910518 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
70910289 GTATTCGATG
* *
70910299 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGC-AGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
70910338 A-ATTCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
70910378 A-ATTCCGGGCTAAGTCCC-AAGGCATTTGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
**
70910417 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
70910457 ATATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
70910497 ATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
70910519 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
38 1 0.01
39 81 0.49
40 83 0.50
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:70910433 original size:79 final size:80
Alignment explanation
Indices: 70910299--70910518 Score: 290
Period size: 79 Copynumber: 2.8 Consensus size: 80
70910289 GTATTCGATG
* * *
70910299 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGC-AGTGACTA-ATTCTGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
**
70910362 ATTTGTGCGAGTTACT
65 ATTTGTGCGAACTACT
70910378 A-ATTCCGGGCTAAGTCCC-AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
70910441 ATTTGTGCGAACTACT
65 ATTTGTGCGAACTACT
* * * *
70910457 ATATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
70910519 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
78 13 0.10
79 89 0.71
80 24 0.19
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAACTACT
Found at i:70913614 original size:49 final size:49
Alignment explanation
Indices: 70913559--70913676 Score: 157
Period size: 49 Copynumber: 2.4 Consensus size: 49
70913549 GTCGTTGTCG
* *
70913559 TGTCCCAGACAGGTTTTACACTGGCTTTCATATATCGAG-GCCAATGCCA
1 TGTCCCAGACAGGTCTTACACTGGCTCTCATATATC-AGTGCCAATGCCA
* * * * *
70913608 TGTCCCAGACAAGTCTTACGCTGGCTCTCATCTATCAGTGTCGATGCCA
1 TGTCCCAGACAGGTCTTACACTGGCTCTCATATATCAGTGCCAATGCCA
70913657 TGTCCCAGACAGGTCTTACA
1 TGTCCCAGACAGGTCTTACA
70913677 TTGACACACA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 2 0.03
49 57 0.97
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
TGTCCCAGACAGGTCTTACACTGGCTCTCATATATCAGTGCCAATGCCA
Found at i:70916807 original size:41 final size:40
Alignment explanation
Indices: 70916704--70916897 Score: 280
Period size: 40 Copynumber: 4.8 Consensus size: 40
70916694 ATAGCAAATC
* * *
70916704 GCACAAATGCCTTCAGGACTTAGCCCGGATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
70916744 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* *
70916784 GCACAAAATGCCTTCGGGTCTTAGCCCGGATATCGTCACTA
1 GCAC-AAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
** *
70916825 GTGCAAATGCCTTCGGGACTTAACCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* *
70916865 GCACAAAGCGCCTTCGGGTCTTAGCCCGGATAT
1 GCACAAA-TGCCTTCGGGACTTAGCCCGGATAT
70916898 CATTCGAATA
Statistics
Matches: 137, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
40 79 0.58
41 58 0.42
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
Found at i:70916898 original size:81 final size:80
Alignment explanation
Indices: 70916674--70916898 Score: 292
Period size: 81 Copynumber: 2.8 Consensus size: 80
70916664 AACCCAAGTA
* * * * * * *
70916674 CCTTCGGGATTTAA-CCAGATATAG-CAAATCGCACAAATGCCTTCAGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATC
*
70916737 GTAACTCGCACAAATG
65 GTAACTAGCACAAATG
*
70916753 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCCGGATATC
1 CCTTCGGGACTTAACCCGGATATAGTCACTAGCAC-AAATGCCTTCGGGTCTTAGCCCGGATATC
* **
70916818 GTCACTAGTGCAAATG
65 GTAACTAGCACAAATG
*
70916834 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAGCGCCTTCGGGTCTTAGCCCGGATATC
1 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAA-TGCCTTCGGGTCTTAGCCCGGATATC
70916899 ATTCGAATAA
Statistics
Matches: 128, Mismatches: 14, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
79 12 0.09
80 18 0.14
81 98 0.77
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATCG
TAACTAGCACAAATG
Found at i:70921596 original size:20 final size:20
Alignment explanation
Indices: 70921571--70921613 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
70921561 TTTAAGAGCC
*
70921571 ACACGCCCGTATGGCTTGAG
1 ACACGCCCGTATAGCTTGAG
*
70921591 ACACGCCCGTATAGCTTGGG
1 ACACGCCCGTATAGCTTGAG
70921611 ACA
1 ACA
70921614 TGCTTGTGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (20 bp):
ACACGCCCGTATAGCTTGAG
Found at i:70922862 original size:42 final size:42
Alignment explanation
Indices: 70922757--70922907 Score: 187
Period size: 42 Copynumber: 3.6 Consensus size: 42
70922747 ACACCAATGA
** * **
70922757 CATATCCCAGATACAGTCTTACATGGGATCT-AGTATCGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCA-TATCGATGC
* * *
70922799 CAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCGATTC
1 C-ATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
* *
70922842 CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
70922884 CATATCCCAGATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
70922908 ATAGTCTCGG
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
42 61 0.65
43 32 0.34
44 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
Found at i:70924406 original size:28 final size:28
Alignment explanation
Indices: 70924359--70924424 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
70924349 GCCAGAACAG
70924359 AGCCACCAG-AATAGATATTTGTGGCAT
1 AGCCACCAGAAATAGATATTTGTGGCAT
70924386 AGCCACCAGAAATAGATATTTGTGGCAT
1 AGCCACCAGAAATAGATATTTGTGGCAT
70924414 AGCCACCAGAA
1 AGCCACCAGAA
70924425 CGCTTCCTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 9 0.24
28 29 0.76
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (28 bp):
AGCCACCAGAAATAGATATTTGTGGCAT
Found at i:70932165 original size:27 final size:28
Alignment explanation
Indices: 70932120--70932209 Score: 103
Period size: 28 Copynumber: 3.3 Consensus size: 28
70932110 CTGACAGTGT
* * * *
70932120 CACCAGATATAGATA-TTGTGGTAGAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
*
70932147 CACCA-TAACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
* *
70932174 CACTAGAAACAAATATTTGTGGCATAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
70932202 CACCAGAA
1 CACCAGAA
70932210 CGCTTCCTCC
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 6 0.12
27 19 0.37
28 27 0.52
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (28 bp):
CACCAGAAACAGATATTTGTGGCATAGC
Found at i:70935007 original size:18 final size:18
Alignment explanation
Indices: 70934984--70935020 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
70934974 CTTGGCCTAT
*
70934984 TGCAATAACAGTAAACAG
1 TGCAATAACAATAAACAG
70935002 TGCAATAACAATAAACAG
1 TGCAATAACAATAAACAG
70935020 T
1 T
70935021 ATGCAAGTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.16, G:0.14, T:0.19
Consensus pattern (18 bp):
TGCAATAACAATAAACAG
Found at i:70935399 original size:27 final size:27
Alignment explanation
Indices: 70935331--70935543 Score: 232
Period size: 27 Copynumber: 8.0 Consensus size: 27
70935321 AAACATACAT
* * *
70935331 CACAT-AGGGTAAAACAATCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
70935357 CATA-AAGGTCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
70935383 AACATAAGGGAAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
** * *
70935410 CTTATAAGGGTAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
70935437 CTCATAAGGGCAAAATAGTTATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
70935464 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
70935491 CACATAAAGGCAAAACAGTCATTTTTC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
70935518 CACATAAGAGCAAAATAGTCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
70935544 TCAATTAAGG
Statistics
Matches: 157, Mismatches: 28, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
26 22 0.14
27 135 0.86
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:70950855 original size:27 final size:27
Alignment explanation
Indices: 70950824--70950929 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 27
70950814 AGGAAGCGTC
70950824 CTGGTGGCTAC-GCCACAATTATCTGAT
1 CTGGTGGCT-CTGCCACAATTATCTGAT
* *
70950851 CTGGTGGCTCTGCCA-TATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
70950878 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* *
70950906 CTGGTGACTCTGTCAC-ATTATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
70950930 TTCTAGCAGC
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
26 3 0.04
27 49 0.71
28 17 0.25
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:70950928 original size:54 final size:54
Alignment explanation
Indices: 70950824--70950933 Score: 152
Period size: 54 Copynumber: 2.0 Consensus size: 54
70950814 AGGAAGCGTC
* *
70950824 CTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCATATATATCTGTT
1 CTGGTGGCTACGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* *
70950878 CTGGTGGCT-CTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTAC-GCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
70950932 CT
1 CT
70950934 AGCAGCCATG
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
53 1 0.02
54 32 0.64
55 17 0.34
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTACGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:70955628 original size:17 final size:18
Alignment explanation
Indices: 70955591--70955628 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
70955581 GATTGAGAGT
* *
70955591 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
70955609 GAAAAGAAAT-TGAAAAA
1 GAAAAGAAATGTGAAAAA
70955626 GAA
1 GAA
70955629 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.24, T:0.11
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:70955641 original size:13 final size:12
Alignment explanation
Indices: 70955610--70955664 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
70955600 TGTGAAACAG
*
70955610 AAAAGAAATTGA
1 AAAAGAAGTTGA
70955622 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
70955634 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
70955646 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
70955658 AAAAGAA
1 AAAAGAA
70955665 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:70963533 original size:27 final size:26
Alignment explanation
Indices: 70963493--70963596 Score: 93
Period size: 27 Copynumber: 3.8 Consensus size: 26
70963483 GGAAGCGTCT
70963493 TGGTGGCTAC-GCCACAATTATCTAATC
1 TGGTGGCT-CTGCCAC-ATTATCTAATC
* **
70963520 TGGTTGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACAT-TATCTAATC
* *
70963547 TGGTGGCTCTGCCACGATTATTTGTATC
1 TGGTGGCTCTGCCAC-ATTATCT-AATC
* *
70963575 TGGTGACTCTGTCACATTATCT
1 TGGTGGCTCTGCCACATTATCT
70963597 GTTCTGGCAG
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
26 3 0.05
27 43 0.68
28 17 0.27
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (26 bp):
TGGTGGCTCTGCCACATTATCTAATC
Found at i:70966144 original size:67 final size:67
Alignment explanation
Indices: 70966036--70966172 Score: 274
Period size: 67 Copynumber: 2.0 Consensus size: 67
70966026 TATACAAATA
70966036 AATGTGTTTGAATTGATTTATTCATGTTTATATGATATTGAATTGTGATGAATGGTTATAGAAGT
1 AATGTGTTTGAATTGATTTATTCATGTTTATATGATATTGAATTGTGATGAATGGTTATAGAAGT
70966101 TG
66 TG
70966103 AATGTGTTTGAATTGATTTATTCATGTTTATATGATATTGAATTGTGATGAATGGTTATAGAAGT
1 AATGTGTTTGAATTGATTTATTCATGTTTATATGATATTGAATTGTGATGAATGGTTATAGAAGT
70966168 TG
66 TG
70966170 AAT
1 AAT
70966173 ATGTGAAATT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 70 1.00
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (67 bp):
AATGTGTTTGAATTGATTTATTCATGTTTATATGATATTGAATTGTGATGAATGGTTATAGAAGT
TG
Found at i:70967041 original size:14 final size:13
Alignment explanation
Indices: 70967021--70967057 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
70967011 AATATTTGAC
70967021 TTGTTCTTAATTA
1 TTGTTCTTAATTA
70967034 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
70967048 TTGTT-TTAAT
1 TTGTTCTTAAT
70967058 ATTCCAGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:70967759 original size:42 final size:42
Alignment explanation
Indices: 70967698--70967805 Score: 130
Period size: 42 Copynumber: 2.6 Consensus size: 42
70967688 GATTTGAGAT
* *
70967698 TTACGTGTAAAACCATGTCTGGGACA-TCGGCATCG-TATTTGA
1 TTACATGTAAGACCATGTCTGGGA-AGT-GGCATCGATATTTGA
* *
70967740 TTTCATGTAAGACCCTGTCTGGGAAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGAAGTGGCATCGATATTTGA
* *
70967782 TTACATGTAAGACCACGTTTGGGA
1 TTACATGTAAGACCATGTCTGGGA
70967806 TGTTGGTATT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 8 0.14
42 48 0.86
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGAAGTGGCATCGATATTTGA
Found at i:70970646 original size:119 final size:120
Alignment explanation
Indices: 70970464--70970686 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
70970454 TTCTCGTTCA
* *
70970464 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
70970529 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
70970584 AATGCCTTCAGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCAGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
70970646 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
70970687 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.74
120 19 0.21
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:70970686 original size:40 final size:40
Alignment explanation
Indices: 70970462--70970686 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
70970452 GCTTCTCGTT
* *
70970462 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
70970502 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
70970542 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
70970582 CCAATGCCTTCAGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
70970621 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
70970662 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70970687 CATCATTCAA
Statistics
Matches: 163, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 118 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:70977239 original size:40 final size:40
Alignment explanation
Indices: 70977179--70977316 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 40
70977169 CGGATGATAA
* *
70977179 CCGGACTAAGATC-CGAAGGCATTTGTGCTAGTGACTATAT
1 CCGGGCTAAG-TCTCGAAGGCATTTGTGCGAGTGACTATAT
*
70977219 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTGACTATAT
*
70977259 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATAT
1 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAG-TGACTATAT
* *
70977299 CC-AGCTAAATCTCGAAGG
1 CCGGGCTAAGTCTCGAAGG
70977317 TACTTGGGTT
Statistics
Matches: 88, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 15 0.17
40 72 0.82
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:70985247 original size:40 final size:40
Alignment explanation
Indices: 70985199--70985404 Score: 333
Period size: 40 Copynumber: 5.2 Consensus size: 40
70985189 GGACTAAGAT
* *
70985199 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
70985239 TCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
70985279 CCGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
70985319 TCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
70985359 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
70985398 CCGAAGG
1 CCGAAGG
70985405 TACTTGGGTT
Statistics
Matches: 154, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 15 0.10
40 139 0.90
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:70986579 original size:32 final size:32
Alignment explanation
Indices: 70986518--70986608 Score: 87
Period size: 32 Copynumber: 2.8 Consensus size: 32
70986508 ACTAAGTGTG
**
70986518 TATATATGTGTAGTTGGATAAAGTTGAATGTC
1 TATATATGTGTAGTTGGATAAAGCCGAATGTC
*
70986550 TATATATGTGT-GATTGGATATAA-CCGAATGTG
1 TATATATGTGTAG-TTGGATA-AAGCCGAATGTC
* * * *
70986582 TATCTAGGTGTAGTTTGATATAGCCGA
1 TATATATGTGTAGTTGGATAAAGCCGA
70986609 TTGAGATGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
31 2 0.04
32 43 0.90
33 3 0.06
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (32 bp):
TATATATGTGTAGTTGGATAAAGCCGAATGTC
Found at i:70986776 original size:27 final size:26
Alignment explanation
Indices: 70986745--70986893 Score: 147
Period size: 27 Copynumber: 5.6 Consensus size: 26
70986735 TTTGAGGGAT
70986745 GCACTAAGTGTGCGAATTTGATACTGA
1 GCACTAAGTGTGCGAATTTGAT-CTGA
* * * *
70986772 GCACTAAGTGTGCGAGTTGGATTTAA
1 GCACTAAGTGTGCGAATTTGATCTGA
*
70986798 GCACTATGTGTGCGAATTTGATACTGA
1 GCACTAAGTGTGCGAATTTGAT-CTGA
* * * *
70986825 GCACTAAGTGTGCGAGTTGGATTTAA
1 GCACTAAGTGTGCGAATTTGATCTGA
* * *
70986851 GCACTACGTGTGTGAATTAAT-TTCTGA
1 GCACTAAGTGTGCGAATT--TGATCTGA
70986878 GCACTAAGTGTGCGAA
1 GCACTAAGTGTGCGAA
70986894 ATCAGTTATT
Statistics
Matches: 96, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
26 38 0.40
27 58 0.60
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (26 bp):
GCACTAAGTGTGCGAATTTGATCTGA
Found at i:70986825 original size:53 final size:53
Alignment explanation
Indices: 70986745--70986892 Score: 235
Period size: 53 Copynumber: 2.8 Consensus size: 53
70986735 TTTGAGGGAT
70986745 GCACTAAGTGTGCGAATTTGATACTGAGCACTAAGTGTGCGAGTTGGATTTAA
1 GCACTAAGTGTGCGAATTTGATACTGAGCACTAAGTGTGCGAGTTGGATTTAA
*
70986798 GCACTATGTGTGCGAATTTGATACTGAGCACTAAGTGTGCGAGTTGGATTTAA
1 GCACTAAGTGTGCGAATTTGATACTGAGCACTAAGTGTGCGAGTTGGATTTAA
* * * *
70986851 GCACTACGTGTGTGAA-TTAATTTCTGAGCACTAAGTGTGCGA
1 GCACTAAGTGTGCGAATTTGA-TACTGAGCACTAAGTGTGCGA
70986893 AATCAGTTAT
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
52 3 0.03
53 86 0.97
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (53 bp):
GCACTAAGTGTGCGAATTTGATACTGAGCACTAAGTGTGCGAGTTGGATTTAA
Found at i:70990774 original size:39 final size:40
Alignment explanation
Indices: 70990729--70990896 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
70990719 CGGGGTTTAG
* * *
70990729 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
70990768 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
70990808 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
70990848 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
70990889 CCGGATAT
1 CCGGATAT
70990897 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:70990879 original size:41 final size:40
Alignment explanation
Indices: 70990752--70990896 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
70990742 CTCGCACAAG
* * * * *
70990752 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
70990792 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
70990832 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
70990873 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
70990897 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:70998818 original size:40 final size:40
Alignment explanation
Indices: 70998748--70998914 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
70998738 TCGGGGTTAG
** * *
70998748 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * *
70998787 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * **
70998827 CCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * * *
70998867 CCGGATGTAGTGC-TTAGCACAAAAGCCTTCGAGACTTAGC
1 CCGGATATAGT-CACTAGCACAAATGCCTTCGGGTCTTAAC
70998907 CCGGATAT
1 CCGGATAT
70998915 CATTCGAGTA
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 15 0.14
40 88 0.85
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:71007636 original size:49 final size:50
Alignment explanation
Indices: 71007508--71007640 Score: 196
Period size: 50 Copynumber: 2.7 Consensus size: 50
71007498 AGCTATTGTG
* **
71007508 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
71007558 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
71007608 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
71007641 TGCATACCAG
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 30 0.41
50 44 0.59
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:71009572 original size:972 final size:972
Alignment explanation
Indices: 71007689--71009634 Score: 3439
Period size: 972 Copynumber: 2.0 Consensus size: 972
71007679 GAAAATGTGC
* *
71007689 AGGCAATTGTGTATCTGTTGTTATCCCGATGAGTTCAACGGGAAATCGATTAAGTGAAAATAAAT
1 AGGCAATTATGTATCTGTTATTATCCCGATGAGTTCAACGGGAAATCGATTAAGTGAAAATAAAT
71007754 GTGAAAGTGATTATATGATGAACAAGTGCAAGTATATGTTTATTTAAATTTATGAGCAATATGCT
66 GTGAAAGTGATTATATGATGAACAAGTGCAAGTATATGTTTATTTAAATTTATGAGCAATATGCT
71007819 CGATATTTGAGCGAACCTCGGTAAAATGGAAGGGATTAAGTGAAATTGTGCAAAAGTGAACTTTA
131 CGATATTTGAGCGAACCTCGGTAAAATGGAAGGGATTAAGTGAAATTGTGCAAAAGTGAACTTTA
71007884 GTAGTAAAACAGTGTTGGACAGCAACAGTGCATGAATTTGAAAATTTACCAAAAATTGTGTAAGT
196 GTAGTAAAACAGTGTTGGACAGCAACAGTGCATGAATTTGAAAATTTACCAAAAATTGTGTAAGT
71007949 TGAATTAAATTTCAAATAAAATATGTAATTAAATTTTATTGAGTCTATTTTCACATAAAAGAAAC
261 TGAATTAAATTTCAAATAAAATATGTAATTAAATTTTATTGAGTCTATTTTCACATAAAAGAAAC
* *
71008014 AGGGGAAGCAAAAGAATTCCGTATTATGTGATATTTGAATTCTTGTGAGACAGTGTCTAAATGAA
326 AGGGGAAGCAAAACAATTCCATATTATGTGATATTTGAATTCTTGTGAGACAGTGTCTAAATGAA
*
71008079 TTCGAGATCCCCTATTCTGAATTGGAAAAATTGTTAAAAATTATAGAAAAATAATTTTTGGGTAT
391 TTCGAGATCCCCTATTCTGAATTAGAAAAATTGTTAAAAATTATAGAAAAATAATTTTTGGGTAT
* *
71008144 AATTTATATTCCTAGAATCTGAGATGAGTCTAATTTTAACAAAAACAAACGAGAACATCATCCGA
456 AATTTATATCCCTAGAATCTGAGATGAGTCTAATTTTAACAAAAACAAACAAGAACATCATCCGA
* * * *
71008209 GTTTTGTACTATGATATAAATAAATTTTAGTAAAGAAAGGTTGAAGCTGTTAAACAGCAAAACAG
521 GTTTTATACTATGAGATAAATAAATTTTAGTAAAGAAAGGTCGAAGCTGTTAAACAGAAAAACAG
* * *
71008274 GGGAGAATTTGAATAATAAACTGTACTTATTGGCTGGACTAGAAATTCTGAAAATTTTATGGTGG
586 GGGAGAATTTGAATAATAAAATGTACTTATTGGCTGGACTAAAAATTCTGAAAATTTTATGGTGC
*
71008339 AAAGATATATGAGTCTAGTTTGTTGGAAAATTTATGGATCTTAATTTGGAGTTCCTTAACTCTAA
651 AAAGATATATGAGTCTAGTTTGTTGGAAAATTTATGGATCTTAATTTGGAGTTCCGTAACTCTAA
*
71008404 ATAAAAATGATTTAGTGACTATTACTCAAGAAAATAGCTTAACCAGAACATGTGTAAATGTACAA
716 ATAAAAATGATTTAGTGACTATTACTCAAGAAAACAGCTTAACCAGAACATGTGTAAATGTACAA
*
71008469 ATGAGTAAGTTTTATTGTGGGAAGCATGTTAGTAAATTGCTTATTATTATTTCATGTGAGCTTAC
781 ATGAGTAAGTTTTATTATGGGAAGCATGTTAGTAAATTGCTTATTATTATTTCATGTGAGCTTAC
*
71008534 TAAGCATAAAGCTTACCCCCCTCCTTTCCATTTCTTTTAGTGTTGTCAGGTTAGCTCAGGGTTGG
846 TAAGCATAAAGCTTACCCCCCTCATTTCCATTTCTTTTAGTGTTGTCAGGTTAGCTCAGGGTTGG
*
71008599 AGACCGTCGGAGGAAGCATCACACTATCAAGCCAACACCTTGACAGTATAAACACATATGCT
911 AGACCGTCGGAGGAAGCATCACACTATCAAGCCAACACCTTGACAATATAAACACATATGCT
**
71008661 AGGCAATTATGTATCTGTTATTATTTCGATGAGTTCAACGGGAAATCGATTAAGTGAAAATAAAT
1 AGGCAATTATGTATCTGTTATTATCCCGATGAGTTCAACGGGAAATCGATTAAGTGAAAATAAAT
* *
71008726 GTGAAAGTGATTATGTGATGAACAAGTGCAAGTATATGTTTATTTGAATTTATGAGCAATATGCT
66 GTGAAAGTGATTATATGATGAACAAGTGCAAGTATATGTTTATTTAAATTTATGAGCAATATGCT
71008791 CGATATTTGAGCGAACCTCGGTAAAATGGAAGGGATTAAGTGAAATTGTGCAAAAGTGAACTTTA
131 CGATATTTGAGCGAACCTCGGTAAAATGGAAGGGATTAAGTGAAATTGTGCAAAAGTGAACTTTA
*
71008856 GTAGTAAAACAGTGTTGGACAGCAACAGTGCATGAATTTGAAAATTTACTAAAAATTGTGTAAGT
196 GTAGTAAAACAGTGTTGGACAGCAACAGTGCATGAATTTGAAAATTTACCAAAAATTGTGTAAGT
* *
71008921 TGAATTAAATTTCAAATAAAATATGTAATTAAATTTTATTGAGTTTATTTTCACATAAAAGAAAT
261 TGAATTAAATTTCAAATAAAATATGTAATTAAATTTTATTGAGTCTATTTTCACATAAAAGAAAC
*
71008986 AGGGGAAGCAAAACAATTCCATATTATGTGATATTTGAATTCTTGTGAGACAGTGTCTGAATGAA
326 AGGGGAAGCAAAACAATTCCATATTATGTGATATTTGAATTCTTGTGAGACAGTGTCTAAATGAA
* * *
71009051 TTTGAGATCCCCTTTTTTGAATTAGAAAAATTGTTAAAAATTATAGAAAAATAATTTTTGGGTAT
391 TTCGAGATCCCCTATTCTGAATTAGAAAAATTGTTAAAAATTATAGAAAAATAATTTTTGGGTAT
* * *
71009116 AATTTATATCCCTAGAATCTTG-GATGAGTTTAATTTTAATAAAAAGAAACAAGAACATCATCCG
456 AATTTATATCCCTAGAATC-TGAGATGAGTCTAATTTTAACAAAAACAAACAAGAACATCATCCG
* *
71009180 AGTTTTATACTATGAGATAAATAAATTTTAGTGAAGAAAGGTCGAAGCTGTTAAACAGAAAAATA
520 AGTTTTATACTATGAGATAAATAAATTTTAGTAAAGAAAGGTCGAAGCTGTTAAACAGAAAAACA
* *
71009245 GGGGAGATTTTGAATAATAAAATGTACTTATTGGCTGGACTAAAAATTCTGATAATTTTATGGTG
585 GGGGAGAATTTGAATAATAAAATGTACTTATTGGCTGGACTAAAAATTCTGAAAATTTTATGGTG
*
71009310 CAAATATATATGAGTCTAGTTT-TTGGAAAAATTTATGGATCTTAATTTGGAGTTCCGTAACTCT
650 CAAAGATATATGAGTCTAGTTTGTTGG-AAAATTTATGGATCTTAATTTGGAGTTCCGTAACTCT
* * * *
71009374 GAATATAAGTGATTTAGTGACTATTACTGAAGAAAACAGCTTAACCAGAACATGTGTAAATGTAC
714 AAATAAAAATGATTTAGTGACTATTACTCAAGAAAACAGCTTAACCAGAACATGTGTAAATGTAC
71009439 AAATGAGTTAA-TTTTATTATGGGAAGCATGTTAGTAAATTGCTTATTATTATTTCATGTGAGCT
779 AAATGAG-TAAGTTTTATTATGGGAAGCATGTTAGTAAATTGCTTATTATTATTTCATGTGAGCT
* *
71009503 TACTAAGCATAAAGCTTACCCCCCTTATTTCCATTTCTTTTAGTGTTGTCAGGTTAGCTTAGGGT
843 TACTAAGCATAAAGCTTACCCCCCTCATTTCCATTTCTTTTAGTGTTGTCAGGTTAGCTCAGGGT
*
71009568 TGGAGACCGTCGGAGGCAGCATCACACTATCAAGCCAACACCTTGACAATATAAACACATATGCT
908 TGGAGACCGTCGGAGGAAGCATCACACTATCAAGCCAACACCTTGACAATATAAACACATATGCT
71009633 AG
1 AG
71009635 ATTTATCAAG
Statistics
Matches: 926, Mismatches: 45, Indels: 6
0.95 0.05 0.01
Matches are distributed among these distances:
971 4 0.00
972 917 0.99
973 5 0.01
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (972 bp):
AGGCAATTATGTATCTGTTATTATCCCGATGAGTTCAACGGGAAATCGATTAAGTGAAAATAAAT
GTGAAAGTGATTATATGATGAACAAGTGCAAGTATATGTTTATTTAAATTTATGAGCAATATGCT
CGATATTTGAGCGAACCTCGGTAAAATGGAAGGGATTAAGTGAAATTGTGCAAAAGTGAACTTTA
GTAGTAAAACAGTGTTGGACAGCAACAGTGCATGAATTTGAAAATTTACCAAAAATTGTGTAAGT
TGAATTAAATTTCAAATAAAATATGTAATTAAATTTTATTGAGTCTATTTTCACATAAAAGAAAC
AGGGGAAGCAAAACAATTCCATATTATGTGATATTTGAATTCTTGTGAGACAGTGTCTAAATGAA
TTCGAGATCCCCTATTCTGAATTAGAAAAATTGTTAAAAATTATAGAAAAATAATTTTTGGGTAT
AATTTATATCCCTAGAATCTGAGATGAGTCTAATTTTAACAAAAACAAACAAGAACATCATCCGA
GTTTTATACTATGAGATAAATAAATTTTAGTAAAGAAAGGTCGAAGCTGTTAAACAGAAAAACAG
GGGAGAATTTGAATAATAAAATGTACTTATTGGCTGGACTAAAAATTCTGAAAATTTTATGGTGC
AAAGATATATGAGTCTAGTTTGTTGGAAAATTTATGGATCTTAATTTGGAGTTCCGTAACTCTAA
ATAAAAATGATTTAGTGACTATTACTCAAGAAAACAGCTTAACCAGAACATGTGTAAATGTACAA
ATGAGTAAGTTTTATTATGGGAAGCATGTTAGTAAATTGCTTATTATTATTTCATGTGAGCTTAC
TAAGCATAAAGCTTACCCCCCTCATTTCCATTTCTTTTAGTGTTGTCAGGTTAGCTCAGGGTTGG
AGACCGTCGGAGGAAGCATCACACTATCAAGCCAACACCTTGACAATATAAACACATATGCT
Found at i:71011400 original size:16 final size:15
Alignment explanation
Indices: 71011362--71011400 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
71011352 TGGATTCTCG
*
71011362 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
71011377 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
71011392 TATTCTTGG
1 TA-TCTTGG
71011401 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:71013859 original size:49 final size:49
Alignment explanation
Indices: 71013692--71013884 Score: 235
Period size: 49 Copynumber: 3.8 Consensus size: 49
71013682 TGAGGTCACG
71013692 TGTGTAGTACTAAGTGCAGGCTACTACGATCGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACG--C--GTACCAGATAATTGGTCGCA
* * * * * * *
71013745 TTTTTCGTACTAATTGCAGGCTACTATGCGTACCTA-ATAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACC-AGATAA-TT-GGTCGCA
*
71013796 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
*
71013845 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA
71013885 CTTCGGCTAC
Statistics
Matches: 119, Mismatches: 17, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
49 52 0.44
50 6 0.05
51 38 0.32
53 23 0.19
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:71013869 original size:100 final size:102
Alignment explanation
Indices: 71013687--71013889 Score: 313
Period size: 100 Copynumber: 2.0 Consensus size: 102
71013677 TATTGTGAGG
* * * *
71013687 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGATCGTGTACCAGATAATTGGTCGCATTTTTCG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA--ATCGTGTACCAGATAATTGGTCGCATGTGTAG
*
71013752 TACTAATTGCAGGCTACTATGCGTACCTA-ATAACTTCGA
64 TACTAAGTGCAGGCTACTATGCGTACC-AGATAACTTCGA
71013791 TCACATGTGTAGTACTAAGTGCAGGCTACT-A-CGTGTACCAGATAATTGGTCGCATGTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTAATCGTGTACCAGATAATTGGTCGCATGTGTAGTA
71013854 CTAAGTGCAGGCTACTATGCGTACCAGATAACTTCG
66 CTAAGTGCAGGCTACTATGCGTACCAGATAACTTCG
71013890 GCTACAAGTG
Statistics
Matches: 93, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
99 1 0.01
100 62 0.67
101 1 0.01
104 29 0.31
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (102 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTAATCGTGTACCAGATAATTGGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:71019061 original size:47 final size:47
Alignment explanation
Indices: 71019010--71019438 Score: 660
Period size: 47 Copynumber: 9.1 Consensus size: 47
71019000 TTAGGATTTT
71019010 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
71019057 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
71019104 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
71019151 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
71019198 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
71019245 ATGTGATGAATGTGAGCATGCATATGTGTAATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
71019292 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
71019339 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGTCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
71019386 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
71019433 ATGTGA
1 ATGTGA
71019439 AATATGTATG
Statistics
Matches: 342, Mismatches: 40, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 342 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:71019114 original size:94 final size:94
Alignment explanation
Indices: 71019010--71019438 Score: 786
Period size: 94 Copynumber: 4.6 Consensus size: 94
71019000 TTAGGATTTT
* *
71019010 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
71019075 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
71019104 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
71019169 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
71019198 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
*
71019263 TGCATATGTGTAATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
*
71019292 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
*
71019357 TGCATATGTGTGATAAGTCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* * *
71019386 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
71019439 AATATGTATG
Statistics
Matches: 325, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 325 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (94 bp):
ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:71019566 original size:98 final size:96
Alignment explanation
Indices: 71019409--71019592 Score: 307
Period size: 98 Copynumber: 1.9 Consensus size: 96
71019399 GAACATGCAT
*
71019409 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
71019474 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
71019505 ATATGTGGTAAAGCCGAAT-GATCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
71019569 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
71019593 GGCGATGTGC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 2 0.02
96 25 0.30
97 2 0.02
98 53 0.65
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:71019608 original size:50 final size:48
Alignment explanation
Indices: 71019408--71019592 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
71019398 TGAACATGCA
71019408 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
71019456 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
71019504 CATATGTGGTAAAGCCGAAT-GATCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
71019554 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
71019593 GGCGATGTGC
Statistics
Matches: 126, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
47 2 0.02
48 79 0.63
49 4 0.03
50 39 0.31
51 2 0.02
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:71019788 original size:37 final size:37
Alignment explanation
Indices: 71019738--71019845 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
71019728 GGAAATATAT
71019738 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
71019775 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
** * **
71019812 TCTAGGTAAGACCCGATAACTTTGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
71019846 TCGTCTGAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:71037005 original size:25 final size:25
Alignment explanation
Indices: 71036971--71037022 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
71036961 ATTATAAATG
71036971 AATGTTATATGCTTTGATATTGCAT
1 AATGTTATATGCTTTGATATTGCAT
71036996 AATGTTATATGCTTTGATATTGCAT
1 AATGTTATATGCTTTGATATTGCAT
71037021 AA
1 AA
71037023 AATTTGTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (25 bp):
AATGTTATATGCTTTGATATTGCAT
Found at i:71043589 original size:40 final size:40
Alignment explanation
Indices: 71043545--71043729 Score: 291
Period size: 40 Copynumber: 4.7 Consensus size: 40
71043535 AGTGGCTAAT
*
71043545 TCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATA
* *
71043585 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATA
* *
71043625 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATA
* *
71043665 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATA
*
71043704 ACCGGGCTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71043730 AGCTAGTGGC
Statistics
Matches: 137, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 37 0.27
40 100 0.73
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATA
Found at i:71043709 original size:79 final size:80
Alignment explanation
Indices: 71043546--71043729 Score: 289
Period size: 79 Copynumber: 2.3 Consensus size: 80
71043536 GTGGCTAATT
* *
71043546 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
71043611 TGCGAGCTATTATAT
66 TGCAAGCTACTATAA
* *
71043626 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
71043690 TGCAAGTTACTATAA
66 TGCAAGCTACTATAA
71043705 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
71043730 AGCTAGTGGC
Statistics
Matches: 96, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 60 0.62
80 36 0.38
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACTATAA
Found at i:71043743 original size:40 final size:39
Alignment explanation
Indices: 71043506--71043752 Score: 277
Period size: 40 Copynumber: 6.2 Consensus size: 39
71043496 CGGATGATAA
* * * *
71043506 CCGGGCTAAGTCTCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTATA-T
*
71043546 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
71043586 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
71043626 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
71043665 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
71043705 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAT
71043745 CC-GGCTAA
1 CCGGGCTAA
71043753 ACTCCGAAGG
Statistics
Matches: 188, Mismatches: 14, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
39 44 0.23
40 140 0.74
41 4 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:71043762 original size:79 final size:79
Alignment explanation
Indices: 71043546--71043752 Score: 283
Period size: 79 Copynumber: 2.6 Consensus size: 79
71043536 GTGGCTAATT
* *
71043546 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
71043611 TGCGAGCTATTATAT
65 TGCAAGCTACTATAA
*
71043626 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
71043690 TGCAAGTTACTATAA
65 TGCAAGCTACTATAA
* * *
71043705 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
71043753 ACTCCGAAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 74 0.65
80 38 0.34
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACTATAA
Found at i:71051696 original size:40 final size:40
Alignment explanation
Indices: 71051635--71051880 Score: 260
Period size: 40 Copynumber: 6.2 Consensus size: 40
71051625 GGATGATAAT
* *
71051635 CGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-TC
1 CGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATATC
* *
71051675 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATATC
71051715 CGGGCTAAGTCCCGAAGGCATTTGTGCGA--GCTATTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATATC
*
71051755 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTATAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT-C
* * *
71051794 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATATC
* *
71051834 CGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTAATATC
71051874 C-GGCTAA
1 CGGGCTAA
71051881 ACTCCGAAGG
Statistics
Matches: 179, Mismatches: 14, Indels: 27
0.81 0.06 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 39 0.22
40 129 0.72
41 5 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATATC
Found at i:71051837 original size:79 final size:80
Alignment explanation
Indices: 71051635--71051857 Score: 308
Period size: 80 Copynumber: 2.8 Consensus size: 80
71051625 GGATGATAAT
* * ** *
71051635 CGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGGCATTC
1 CGGGCTAAGTCCCGAAG-GCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTT
71051698 GTGCGAGCTACTATATC
64 GTGCGAGCTACTATATC
* * *
71051715 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
* *
71051780 GCGAGTTATTATA-C
66 GCGAGCTACTATATC
*
71051794 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
71051858 AGCTAGTGGC
Statistics
Matches: 128, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
79 61 0.48
80 64 0.50
81 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGCTACTATATC
Found at i:71051890 original size:79 final size:79
Alignment explanation
Indices: 71051674--71051880 Score: 292
Period size: 79 Copynumber: 2.6 Consensus size: 79
71051664 GTGGCTAATT
*
71051674 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
71051739 TGCGAGCTATTATAT
65 TGCAAGCTACTATAA
*
71051754 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
71051818 TGCAAGTTACTATAA
65 TGCAAGCTACTATAA
* * *
71051833 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
71051881 ACTCCGAAGG
Statistics
Matches: 114, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 75 0.66
80 38 0.33
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACTATAA
Found at i:71056610 original size:47 final size:47
Alignment explanation
Indices: 71056559--71056732 Score: 154
Period size: 47 Copynumber: 3.7 Consensus size: 47
71056549 TTTTGAAAGG
71056559 AGTTACCTTGATTTGGCTACGAGCCATGGTATAAGTACTCCGGGATA
1 AGTTACCTTGATTTGGCTACGAGCCATGGTATAAGTACTCCGGGATA
* ** * * ** ** * **
71056606 AGTTATCTTGATTTTTCTTCGAGCCATGAT-TAAGGTTTTTTGAGAGG
1 AGTTACCTTGATTTGGCTACGAGCCATGGTATAA-GTACTCCGGGATA
* * *
71056653 AGATACCTTGATTTGGCTAC-AGACCATGGTATAGGTACTCCGGAATA
1 AGTTACCTTGATTTGGCTACGAG-CCATGGTATAAGTACTCCGGGATA
* * *
71056700 AGTTATCTTGATTTGGCTAAGGGCCATGGTATA
1 AGTTACCTTGATTTGGCTACGAGCCATGGTATA
71056733 GATTACTTAT
Statistics
Matches: 92, Mismatches: 31, Indels: 8
0.70 0.24 0.06
Matches are distributed among these distances:
46 5 0.05
47 84 0.91
48 3 0.03
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (47 bp):
AGTTACCTTGATTTGGCTACGAGCCATGGTATAAGTACTCCGGGATA
Found at i:71056692 original size:94 final size:94
Alignment explanation
Indices: 71056531--71056713 Score: 296
Period size: 94 Copynumber: 1.9 Consensus size: 94
71056521 GCCATGACTA
* *
71056531 CGAGCCATGATTTAGGTATTTTGAAAGGAGTTACCTTGATTTGGCTACGAGCCATGGTATAAGTA
1 CGAGCCATGATTAAGGTATTTTGAAAGGAGATACCTTGATTTGGCTACGAGCCATGGTATAAGTA
*
71056596 CTCCGGGATAAGTTATCTTGATTTTTCTT
66 CTCCGGAATAAGTTATCTTGATTTTTCTT
* * *
71056625 CGAGCCATGATTAAGGTTTTTTGAGAGGAGATACCTTGATTTGGCTAC-AGACCATGGTATAGGT
1 CGAGCCATGATTAAGGTATTTTGAAAGGAGATACCTTGATTTGGCTACGAG-CCATGGTATAAGT
71056689 ACTCCGGAATAAGTTATCTTGATTT
65 ACTCCGGAATAAGTTATCTTGATTT
71056714 GGCTAAGGGC
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
93 2 0.02
94 80 0.98
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.36
Consensus pattern (94 bp):
CGAGCCATGATTAAGGTATTTTGAAAGGAGATACCTTGATTTGGCTACGAGCCATGGTATAAGTA
CTCCGGAATAAGTTATCTTGATTTTTCTT
Found at i:71057018 original size:16 final size:17
Alignment explanation
Indices: 71056997--71057028 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
71056987 TGAATTGCTC
71056997 AACTATGAA-CTTACTA
1 AACTATGAAGCTTACTA
71057013 AACTATGAAGCTTACT
1 AACTATGAAGCTTACT
71057029 GTGTGTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (17 bp):
AACTATGAAGCTTACTA
Found at i:71057824 original size:25 final size:25
Alignment explanation
Indices: 71057780--71057832 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
71057770 TTTTCCCATA
71057780 GCCAAGGCAAACAGACGTGTCTCCG
1 GCCAAGGCAAACAGACGTGTCTCCG
* * * *
71057805 GCCAAGGCACACGGATGTGTCTCTG
1 GCCAAGGCAAACAGACGTGTCTCCG
71057830 GCC
1 GCC
71057833 GTGTGGTGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.23, C:0.32, G:0.30, T:0.15
Consensus pattern (25 bp):
GCCAAGGCAAACAGACGTGTCTCCG
Found at i:71061122 original size:36 final size:36
Alignment explanation
Indices: 71061082--71061197 Score: 135
Period size: 36 Copynumber: 3.2 Consensus size: 36
71061072 CGGGTGGTTC
*
71061082 AGCTCTTATGAGCATTTGGCATGTTTCGTTTGGACT
1 AGCTCTTATGAGCATTTGGCATGTTTCGGTTGGACT
* * * *
71061118 AGCTCTTAGGAGCAATTGGCATGTTATCGGGTGG-TT
1 AGCTCTTATGAGCATTTGGCATGTT-TCGGTTGGACT
* * *
71061154 AAGCTCTTATGAGCATTTGGCGTCTTTAGGTTGGACT
1 -AGCTCTTATGAGCATTTGGCATGTTTCGGTTGGACT
71061191 AGCTCTT
1 AGCTCTT
71061198 GAAAGCAATT
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
36 37 0.57
37 28 0.43
ACGTcount: A:0.18, C:0.16, G:0.28, T:0.38
Consensus pattern (36 bp):
AGCTCTTATGAGCATTTGGCATGTTTCGGTTGGACT
Found at i:71061159 original size:73 final size:73
Alignment explanation
Indices: 71061066--71061246 Score: 238
Period size: 73 Copynumber: 2.5 Consensus size: 73
71061056 TGTTTTGGTG
* * * * *
71061066 TGTTATCGGGTGGTTCAGCTCTTATGAGCATTTGGCATGTTTCGTTTGGACTAGCTCTT-AGGAG
1 TGTTATCGGGTGGTTAAGCTCTTATGAGCATTTGGCATCTTTAGGTTGGACTAGCTCTTGA-AAG
71061130 CAATTGGCA
65 CAATTGGCA
*
71061139 TGTTATCGGGTGGTTAAGCTCTTATGAGCATTTGGCGTCTTTAGGTTGGACTAGCTCTTGAAAGC
1 TGTTATCGGGTGGTTAAGCTCTTATGAGCATTTGGCATCTTTAGGTTGGACTAGCTCTTGAAAGC
**
71061204 AATTGGTG
66 AATTGGCA
* * * *
71061212 TGTTATCGGGTGGATGAGGTCTTATGTGCATTTGG
1 TGTTATCGGGTGGTTAAGCTCTTATGAGCATTTGG
71061247 TGCGTTTTCA
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
73 94 0.99
74 1 0.01
ACGTcount: A:0.18, C:0.14, G:0.31, T:0.38
Consensus pattern (73 bp):
TGTTATCGGGTGGTTAAGCTCTTATGAGCATTTGGCATCTTTAGGTTGGACTAGCTCTTGAAAGC
AATTGGCA
Found at i:71061168 original size:37 final size:36
Alignment explanation
Indices: 71061066--71061174 Score: 139
Period size: 36 Copynumber: 3.0 Consensus size: 36
71061056 TGTTTTGGTG
71061066 TGTTATCGGGTGGTTCAGCTCTTATGAGCATTTGGCA
1 TGTTATCGGGTGGTT-AGCTCTTATGAGCATTTGGCA
** * * *
71061103 TGTT-TCGTTTGGACTAGCTCTTAGGAGCAATTGGCA
1 TGTTATCGGGTGG-TTAGCTCTTATGAGCATTTGGCA
71061139 TGTTATCGGGTGGTTAAGCTCTTATGAGCATTTGGC
1 TGTTATCGGGTGGTT-AGCTCTTATGAGCATTTGGC
71061175 GTCTTTAGGT
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
36 30 0.51
37 29 0.49
ACGTcount: A:0.17, C:0.16, G:0.29, T:0.38
Consensus pattern (36 bp):
TGTTATCGGGTGGTTAGCTCTTATGAGCATTTGGCA
Found at i:71061588 original size:24 final size:24
Alignment explanation
Indices: 71061544--71061589 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
71061534 AGGTTAGATT
**
71061544 TTATTTTTATTTGTTTTGTTTTGC
1 TTATTTTTATTTGTTAAGTTTTGC
71061568 TTATTTTTATTT-TTGAAGTTTT
1 TTATTTTTATTTGTT-AAGTTTT
71061590 TATTTTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 2 0.11
24 17 0.89
ACGTcount: A:0.13, C:0.02, G:0.11, T:0.74
Consensus pattern (24 bp):
TTATTTTTATTTGTTAAGTTTTGC
Found at i:71061910 original size:23 final size:20
Alignment explanation
Indices: 71061867--71061911 Score: 54
Period size: 23 Copynumber: 2.1 Consensus size: 20
71061857 ACCTCTTCTC
*
71061867 TTCAATTTTTGATTTGTTAA
1 TTCAATTTTTGATTTGATAA
71061887 TTCAATTTTGTGGTATTTGATAA
1 TTCAATTTT-T-G-ATTTGATAA
71061910 TT
1 TT
71061912 TCGAGTGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 1 0.05
22 1 0.05
23 10 0.48
ACGTcount: A:0.24, C:0.04, G:0.13, T:0.58
Consensus pattern (20 bp):
TTCAATTTTTGATTTGATAA
Found at i:71066081 original size:49 final size:49
Alignment explanation
Indices: 71066028--71066136 Score: 130
Period size: 49 Copynumber: 2.2 Consensus size: 49
71066018 CCAAATAGTT
* **
71066028 CTTACACTGACTTTCATATATCGAG-GCCGATGCCATGTCTTAGACAAGC
1 CTTACACTGACTCTCATATATCG-GTGCCGATGCCATGTCCCAGACAAGC
* * * * *
71066077 CTTACACTGGCTCTCATCTATCGGTGTCGATGCCATGTCCCAGACAGGT
1 CTTACACTGACTCTCATATATCGGTGCCGATGCCATGTCCCAGACAAGC
71066126 CTTACACTGAC
1 CTTACACTGAC
71066137 ACACAACAAG
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 49 0.98
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
CTTACACTGACTCTCATATATCGGTGCCGATGCCATGTCCCAGACAAGC
Found at i:71067666 original size:38 final size:38
Alignment explanation
Indices: 71067610--71067802 Score: 275
Period size: 38 Copynumber: 5.1 Consensus size: 38
71067600 TAACCCGGAT
71067610 ATTT-TTCCAGCACT-TAGCCTGCGGACTTTAAGTCCAG
1 ATTTATTCCAGCA-TATAGCCTGCGGACTTTAAGTCCAG
**
71067647 ATTTATTCCAGCATATAGCCTGTAGACTTTAAGTCC-G
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
* *
71067684 AATTTATTCTAGCATATAGCTTGCGGACTTTAAGTCCAG
1 -ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
* **
71067723 ATTTATTCCAGCATATAGCCTGTGGACTTTAAGTCTGG
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
*
71067761 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCGG
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
71067799 ATTT
1 ATTT
71067803 CTTCTTTTAT
Statistics
Matches: 139, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
37 6 0.04
38 132 0.95
39 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (38 bp):
ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
Found at i:71067719 original size:76 final size:76
Alignment explanation
Indices: 71067610--71067802 Score: 309
Period size: 76 Copynumber: 2.6 Consensus size: 76
71067600 TAACCCGGAT
71067610 ATTT-TTCCAGCACT-TAGCCTGCGGACTTTAAGTCCAGATTTATTCCAGCATATAGCCTGTAGA
1 ATTTATTCCAGCA-TATAGCCTGCGGACTTTAAGTCCAGATTTATTCCAGCATATAGCCTGTAGA
71067673 CTTTAAGTCCGA
65 CTTTAAGTCCGA
* * *
71067685 ATTTATTCTAGCATATAGCTTGCGGACTTTAAGTCCAGATTTATTCCAGCATATAGCCTGTGGAC
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAGATTTATTCCAGCATATAGCCTGTAGAC
* *
71067750 TTTAAGTCTGG
66 TTTAAGTCCGA
*
71067761 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCGGATTT
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAGATTT
71067803 CTTCTTTTAT
Statistics
Matches: 108, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
75 5 0.05
76 103 0.95
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (76 bp):
ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAGATTTATTCCAGCATATAGCCTGTAGAC
TTTAAGTCCGA
Found at i:71074115 original size:38 final size:38
Alignment explanation
Indices: 71074065--71074251 Score: 277
Period size: 38 Copynumber: 4.9 Consensus size: 38
71074055 GGATATTTTA
71074065 CCAGCACT-TAGCCTGCGGACTTTAAGTCCGGATTTATT
1 CCAGCA-TATAGCCTGCGGACTTTAAGTCCGGATTTATT
71074103 CCAGCATATAGCCTGCGGACTTTAAGTCCGGATTTATT
1 CCAGCATATAGCCTGCGGACTTTAAGTCCGGATTTATT
** **
71074141 CCAGCATATAGCCCACAAACTTTAAGTCCGGATTTATT
1 CCAGCATATAGCCTGCGGACTTTAAGTCCGGATTTATT
* * *
71074179 CCATCATATAGCCTACGGACTTTAAGTCCGAATTTATT
1 CCAGCATATAGCCTGCGGACTTTAAGTCCGGATTTATT
* *
71074217 CTAGCATATAGCCTGTGGACTTTAAGTCCGGATTT
1 CCAGCATATAGCCTGCGGACTTTAAGTCCGGATTT
71074252 CTTCTTTTAC
Statistics
Matches: 134, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
37 1 0.01
38 133 0.99
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (38 bp):
CCAGCATATAGCCTGCGGACTTTAAGTCCGGATTTATT
Found at i:71078691 original size:41 final size:40
Alignment explanation
Indices: 71078638--71078805 Score: 166
Period size: 41 Copynumber: 4.2 Consensus size: 40
71078628 AGCCCGATTC
*
71078638 TTAG-CACAGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
71078677 TTAGACCACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGA-CACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * * *
71078717 TTATGACACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGG--A
71078760 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
71078799 TTTAGAC
1 -TTAGAC
71078806 CCCGATTAGC
Statistics
Matches: 106, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
39 5 0.05
40 37 0.35
41 60 0.57
42 1 0.01
43 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:71083567 original size:49 final size:49
Alignment explanation
Indices: 71083299--71083950 Score: 1035
Period size: 49 Copynumber: 13.6 Consensus size: 49
71083289 CCCTTCGGGA
* *
71083299 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * ** *
71083346 CCTGTCAC--ATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
71083393 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
71083440 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
71083487 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
71083534 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
71083583 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
71083630 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
71083679 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
71083728 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
71083777 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
71083824 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
71083873 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
71083922 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
71083951 TATTCAAATA
Statistics
Matches: 570, Mismatches: 27, Indels: 14
0.93 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 268 0.47
49 301 0.53
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:71083760 original size:194 final size:194
Alignment explanation
Indices: 71083299--71083950 Score: 1131
Period size: 194 Copynumber: 3.4 Consensus size: 194
71083289 CCCTTCGGGA
* * * *
71083299 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC--ATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
** *
71083360 ACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
* * *
71083425 CATCGGCTATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
71083487 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
71083550 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
*
71083615 CATCGGCGATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
71083679 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
71083744 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
71083809 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
71083873 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
71083938 ACACTTTCACATT
66 ACACTTTCACATT
71083951 TATTCAAATA
Statistics
Matches: 442, Mismatches: 14, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
187 1 0.00
188 48 0.11
190 90 0.20
192 45 0.10
194 258 0.58
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (194 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:71091057 original size:40 final size:41
Alignment explanation
Indices: 71091010--71091110 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 41
71091000 CGGATTAGAC
* ** *
71091010 CACTGGCT-TGAAGGCCCTTCGGAACTAAGTCCGGTTATGA-
1 CACTGGCTCT-AAAGCCCTTCAAAACTAAATCCGGTTATGAG
* *
71091050 CACTGGCTCTAAAGCCCTTCAAAACTAAATTCGGTTATTAG
1 CACTGGCTCTAAAGCCCTTCAAAACTAAATCCGGTTATGAG
*
71091091 CACTGGCTCAAAAGCCCTTC
1 CACTGGCTCTAAAGCCCTTC
71091111 GAGACCAAGC
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 32 0.62
41 20 0.38
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (41 bp):
CACTGGCTCTAAAGCCCTTCAAAACTAAATCCGGTTATGAG
Found at i:71091107 original size:41 final size:41
Alignment explanation
Indices: 71090965--71091112 Score: 140
Period size: 41 Copynumber: 3.6 Consensus size: 41
71090955 AGCCCGATTC
* * * *
71090965 TTAGCACTAGCTCAAAAGCCCTTCGAGACCAAGCTCGG--A
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
** * * *
71091004 TTAGACCACTGGCTTGAAGGCCCTTCGGAACTAAGTCCGGTTA
1 TTAG--CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
* * * *
71091047 TGA-CACTGGCTCTAAAGCCCTTCAAAACTAAATTCGGTTA
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
71091087 TTAGCACTGGCTCAAAAGCCCTTCGA
1 TTAGCACTGGCTCAAAAGCCCTTCGA
71091113 GACCAAGCTC
Statistics
Matches: 84, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
39 4 0.05
40 32 0.38
41 45 0.54
43 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (41 bp):
TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
Found at i:71096621 original size:14 final size:15
Alignment explanation
Indices: 71096579--71096627 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
71096569 ATGGAGAAGC
*
71096579 CCAAAATAAAGAAAT
1 CCAAGATAAAGAAAT
71096594 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
* *
71096609 TCATGAT-AAGAAAAT
1 CCAAGATAAAG-AAAT
71096624 CCAA
1 CCAA
71096628 TTTACAACAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 3 0.11
15 25 0.89
ACGTcount: A:0.59, C:0.14, G:0.10, T:0.16
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:71111481 original size:43 final size:43
Alignment explanation
Indices: 71111422--71111561 Score: 137
Period size: 43 Copynumber: 3.3 Consensus size: 43
71111412 TCCCAAACGT
*
71111422 GGTCTTACATGT-AATCAAATATCGATGCCACTATCCCAGACAG
1 GGTCTTACACGTAAATCAAATATCGATGCCAC-ATCCCAGACAG
* *
71111465 GGTTTTACACG-AAATCAAATAT-GATGCCAACATCCCAGACAT
1 GGTCTTACACGTAAATCAAATATCGATGCC-ACATCCCAGACAG
* * * *
71111507 TGTCTTACACGTAAATCATAA-GTCGATGCCAACATCCTAGA-TG
1 GGTCTTACACGTAAATCA-AATATCGATGCC-ACATCCCAGACAG
71111550 TGGTCTTACACG
1 -GGTCTTACACG
71111562 ATAACACAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
42 25 0.31
43 28 0.35
44 28 0.35
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAAATATCGATGCCACATCCCAGACAG
Found at i:71111503 original size:42 final size:43
Alignment explanation
Indices: 71111422--71111561 Score: 137
Period size: 44 Copynumber: 3.3 Consensus size: 43
71111412 TCCCAAACGT
*
71111422 GGTCTTACATGT-AATCAAATATCGATGCC-ACTATCCCAGACAG
1 GGTCTTACACGTAAATCAAATAT-GATGCCAAC-ATCCCAGACAG
* *
71111465 GGTTTTACACG-AAATCAAATATGATGCCAACATCCCAGACAT
1 GGTCTTACACGTAAATCAAATATGATGCCAACATCCCAGACAG
* * * *
71111507 TGTCTTACACGTAAATCATAAGT-CGATGCCAACATCCTAGA-TG
1 GGTCTTACACGTAAATCA-AA-TATGATGCCAACATCCCAGACAG
71111550 TGGTCTTACACG
1 -GGTCTTACACG
71111562 ATAACACAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
42 25 0.31
43 27 0.33
44 28 0.35
45 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAAATATGATGCCAACATCCCAGACAG
Found at i:71113871 original size:11 final size:11
Alignment explanation
Indices: 71113855--71113880 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
71113845 TGAAGCCCAC
71113855 ATCACAATAAT
1 ATCACAATAAT
71113866 ATCACAATAAT
1 ATCACAATAAT
71113877 ATCA
1 ATCA
71113881 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:71115664 original size:46 final size:44
Alignment explanation
Indices: 71115597--71115769 Score: 204
Period size: 46 Copynumber: 3.8 Consensus size: 44
71115587 TGTAACCCGC
71115597 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC--TCGCAT
* *
71115643 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CTCGCAT
* *** * *
71115689 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCTCGCAT
*
71115734 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
71115770 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
44 31 0.29
45 5 0.05
46 41 0.38
47 29 0.27
48 1 0.01
49 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTCGCAT
Found at i:71115762 original size:91 final size:92
Alignment explanation
Indices: 71115605--71115773 Score: 295
Period size: 91 Copynumber: 1.8 Consensus size: 92
71115595 GCCCATAAGT
*
71115605 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-TCGCATCCATAAGTGAACTCGGACTCAACTCAA
71115670 CGAGCTCGGATGCCTAGTTACATCTCTC
65 CGAGCTCGGATGCCTAGTTACATCTCTC
*
71115698 GAACTCGGACTCAACTCAACGAGTTCGGAC-TCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
71115762 GAGTTCGGATGC
66 GAGCTCGGATGC
71115774 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 45 0.62
93 28 0.38
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:71118181 original size:29 final size:29
Alignment explanation
Indices: 71118142--71118229 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
71118132 CAAAGATAAC
*
71118142 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
71118171 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
71118200 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
71118230 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:71118200 original size:15 final size:15
Alignment explanation
Indices: 71118142--71118220 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
71118132 CAAAGATAAC
*
71118142 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
71118156 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
71118171 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
71118185 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
71118200 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
71118215 AAGAAA
1 AAGAAA
71118221 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:71118229 original size:15 final size:15
Alignment explanation
Indices: 71118153--71118229 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
71118143 AGAAAACCGA
71118153 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
71118168 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
71118182 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
71118196 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
71118212 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
71118227 ATA
1 ATA
71118230 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:71121221 original size:93 final size:93
Alignment explanation
Indices: 71121109--71121279 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
71121099 GCCCATAAGT
* *
71121109 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71121174 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
71121202 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
71121267 CGAGTTCGGATGC
66 CGAGCTCGGATGC
71121280 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:71121276 original size:46 final size:46
Alignment explanation
Indices: 71121101--71121276 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
71121091 TGTAACCCGC
* *
71121101 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
71121147 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
71121193 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
71121240 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
71121277 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:71122628 original size:27 final size:27
Alignment explanation
Indices: 71122590--71122641 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
71122580 AAGGGCAAAA
* *
71122590 CAGTCATTTTACCCTACAGGGGTATGT
1 CAGTCATTTTACACTACAAGGGTATGT
71122617 CAGTCATTTTACACTACAAGGGTAT
1 CAGTCATTTTACACTACAAGGGTAT
71122642 TTTGATAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
CAGTCATTTTACACTACAAGGGTATGT
Found at i:71122707 original size:16 final size:15
Alignment explanation
Indices: 71122687--71122754 Score: 82
Period size: 16 Copynumber: 4.3 Consensus size: 15
71122677 GGGAGGAATG
71122687 GAATAGAGCTGTAAT
1 GAATAGAGCTGTAAT
*
71122702 GCAATAGAGTTGTAAT
1 G-AATAGAGCTGTAAT
*
71122718 GGAATAGAGCTATAAT
1 -GAATAGAGCTGTAAT
*
71122734 AGAATAGACCTGTAAT
1 -GAATAGAGCTGTAAT
71122750 GAATA
1 GAATA
71122755 ATTCAGTTGT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
15 6 0.13
16 38 0.84
17 1 0.02
ACGTcount: A:0.43, C:0.07, G:0.24, T:0.26
Consensus pattern (15 bp):
GAATAGAGCTGTAAT
Found at i:71122724 original size:32 final size:32
Alignment explanation
Indices: 71122683--71122754 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
71122673 GGTTGGGAGG
* **
71122683 AATGGAATAGAGCTGTAAT-GCAATAGAGTTGT
1 AATGGAATAGAGCTATAATAG-AATAGACCTGT
71122715 AATGGAATAGAGCTATAATAGAATAGACCTGT
1 AATGGAATAGAGCTATAATAGAATAGACCTGT
71122747 AAT-GAATA
1 AATGGAATA
71122755 ATTCAGTTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 5 0.14
32 30 0.83
33 1 0.03
ACGTcount: A:0.43, C:0.07, G:0.24, T:0.26
Consensus pattern (32 bp):
AATGGAATAGAGCTATAATAGAATAGACCTGT
Found at i:71122931 original size:28 final size:27
Alignment explanation
Indices: 71122884--71122948 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
71122874 AGTAGAATTT
**
71122884 TTTTAGAT-AAATGATTATTATTTTAAAA
1 TTTTA-ATAAAATGATTATTA-AATAAAA
*
71122912 TTTTAATAAAATTATTATTAAATAAAA
1 TTTTAATAAAATGATTATTAAATAAAA
71122939 -TTTAATAAAA
1 TTTTAATAAAA
71122949 ATAATAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 10 0.30
27 7 0.21
28 16 0.48
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (27 bp):
TTTTAATAAAATGATTATTAAATAAAA
Found at i:71122959 original size:26 final size:27
Alignment explanation
Indices: 71122907--71122962 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
71122897 ATTATTATTT
* * *
71122907 TAAAATTTTAATAAAATTATTATTAAA
1 TAAAATTTTAATAAAAATAATAATAAA
71122934 TAAAA-TTTAATAAAAATAATAATAAA
1 TAAAATTTTAATAAAAATAATAATAAA
71122960 TAA
1 TAA
71122963 TAAATAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (27 bp):
TAAAATTTTAATAAAAATAATAATAAA
Found at i:71122970 original size:26 final size:26
Alignment explanation
Indices: 71122915--71122970 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
71122905 TTTAAAATTT
* * * *
71122915 TAATAAAATTATTATTAAATAAAATT
1 TAATAAAAATAATAATAAATAAAATA
71122941 TAATAAAAATAATAATAAATAATAA-A
1 TAATAAAAATAATAATAAATAA-AATA
71122967 TAAT
1 TAAT
71122971 TTAATCATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (26 bp):
TAATAAAAATAATAATAAATAAAATA
Found at i:71126517 original size:27 final size:27
Alignment explanation
Indices: 71126487--71126743 Score: 292
Period size: 27 Copynumber: 9.7 Consensus size: 27
71126477 ACAAGGCCTA
*
71126487 AGGGTATATCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
71126514 AGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
71126541 AGTGTGTTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
71126568 AGGGTGTTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
71126595 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
71126622 -GAGGTATTTCGATAATTTTACAAATTG
1 AG-GGTATTTCGATAATTTTACAAATCG
* * *
71126649 AGGGTATTTCAATAATATCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
71126675 AGGGTATTTCGGT-A--TTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
71126699 AGGGTACTTCGATAATTTTACAATTCG
1 AGGGTATTTCGATAATTTTACAAATCG
71126726 -GGGTTATTTCGATAATTT
1 AGGG-TATTTCGATAATTT
71126744 CTCTTTGTTA
Statistics
Matches: 198, Mismatches: 25, Indels: 14
0.84 0.11 0.06
Matches are distributed among these distances:
23 3 0.02
24 15 0.08
25 2 0.01
26 19 0.10
27 158 0.80
28 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:71127096 original size:28 final size:28
Alignment explanation
Indices: 71127060--71127124 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
71127050 TTGCCCCTTT
* *
71127060 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
* *
71127088 GGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
71127116 AAGCCCAAT
1 AGGCCCAAT
71127125 TACTTCTAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.26, C:0.37, G:0.17, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:71129933 original size:27 final size:27
Alignment explanation
Indices: 71129898--71129976 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
71129888 AAGGGAAAAA
* *
71129898 CAGTCATTTTACCCTACAGGGGTATGT
1 CAGTCATTTTACACTACAAGGGTATGT
71129925 CAGTCATTTTACACTACAAGGGTAT-T
1 CAGTCATTTTACACTACAAGGGTATGT
** * *
71129951 TTGATAATTTTACACTATAAGGGTAT
1 CAG-TCATTTTACACTACAAGGGTAT
71129977 ATCGATAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.04
27 43 0.96
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (27 bp):
CAGTCATTTTACACTACAAGGGTATGT
Found at i:71129983 original size:27 final size:27
Alignment explanation
Indices: 71129930--71130045 Score: 110
Period size: 27 Copynumber: 4.3 Consensus size: 27
71129920 TATGTCAGTC
* *
71129930 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTATAAGGGTATTTCGATA
*
71129957 ATTTTACACTATAAGGGTATATCGATA
1 ATTTTACACTATAAGGGTATTTCGATA
* * *
71129984 ATTTTACA-AATCAAAGGTATTTCGGTA
1 ATTTTACACTAT-AAGGGTATTTCGATA
* * * *
71130011 ATTTTACA-AATCAAGAGTGTTTCGGTA
1 ATTTTACACTAT-AAGGGTATTTCGATA
71130038 ATTTTACA
1 ATTTTACA
71130046 AATCGAGAAT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.03
27 76 0.97
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (27 bp):
ATTTTACACTATAAGGGTATTTCGATA
Found at i:71130267 original size:27 final size:27
Alignment explanation
Indices: 71129943--71130265 Score: 312
Period size: 27 Copynumber: 12.0 Consensus size: 27
71129933 TTACACTACA
* * * *
71129943 AGGGTATTTTGATAATTTTACACTAT-A
1 AGGGTATTTCGGTAATTTTACA-AATCG
* * *
71129970 AGGGTATATCGATAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
71129997 AAGGTATTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
71130024 AGAGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
**
71130051 AGAATATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
71130078 AGGGTGTTTCGGTAATTTCATAAAT-T
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
71130104 AGGGGTATTTAGATAATTTTACAAATCG
1 A-GGGTATTTCGGTAATTTTACAAATCG
* * *
71130132 AGTGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** *
71130158 AGGGTATTTAAGTAATTTTACAAAT-T
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
71130184 AGGGGTATTTCGATAATTTTATAAATTG
1 A-GGGTATTTCGGTAATTTTACAAATCG
*
71130212 AGGGTATTTCGGTAATTTTACAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
71130239 GGGGTACTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
71130266 GGATTATTTC
Statistics
Matches: 245, Mismatches: 45, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
26 27 0.11
27 216 0.88
28 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:71130275 original size:81 final size:81
Alignment explanation
Indices: 71129944--71130263 Score: 365
Period size: 81 Copynumber: 4.0 Consensus size: 81
71129934 TACACTACAA
* * * * * * *
71129944 GGGTATTTTGATAATTTTACACTAT-AAGGGTATATCGATAATTTTACAAATCAAAGGTATTTCG
1 GGGTATTTCGATAATTTTACA-AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCG
* *
71130008 GTAATTTTACAAATCAA
65 GTAATTTTACAAATTAG
* * * ** *
71130025 GAGTGTTTCGGTAATTTTACAAATCGAGAATATTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
1 GGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGG
* *
71130090 TAATTTCATAAATTAG
66 TAATTTTACAAATTAG
* * * * **
71130106 GGGTATTTAGATAATTTTACAAATCGAGTGTATTTCAGTAATTTCAC-AATCGAGGGTATTTAAG
1 GGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGG
71130170 TAATTTTACAAATTAG
66 TAATTTTACAAATTAG
* * * * *
71130186 GGGTATTTCGATAATTTTATAAATTGAGGGTATTTCGGTAATTTTACAAACCGGGGGTACTTCGG
1 GGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGG
71130251 TAATTTTACAAAT
66 TAATTTTACAAAT
71130264 CGGGATTATT
Statistics
Matches: 196, Mismatches: 41, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
80 71 0.36
81 125 0.64
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (81 bp):
GGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGG
TAATTTTACAAATTAG
Found at i:71130954 original size:49 final size:49
Alignment explanation
Indices: 71130893--71130991 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
71130883 TTAATCACCT
71130893 TTTTCTTTTTCACCAACTCATCTTGTTTGCTCTATTTAAAGCCAACTTC
1 TTTTCTTTTTCACCAACTCATCTTGTTTGCTCTATTTAAAGCCAACTTC
71130942 TTTTCTTTTTCACCAACTCATCTTGTTTGCTCTATTTAAAGCCAACTTC
1 TTTTCTTTTTCACCAACTCATCTTGTTTGCTCTATTTAAAGCCAACTTC
71130991 T
1 T
71130992 CGCCAATTCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.20, C:0.26, G:0.06, T:0.47
Consensus pattern (49 bp):
TTTTCTTTTTCACCAACTCATCTTGTTTGCTCTATTTAAAGCCAACTTC
Found at i:71132267 original size:44 final size:45
Alignment explanation
Indices: 71132190--71132295 Score: 117
Period size: 44 Copynumber: 2.4 Consensus size: 45
71132180 TGCTATAACC
* ** *
71132190 ATCCGCACACTTAGTGCCTTAAGGGTTAGCCGAAGCTATAATAAT
1 ATCCGCACACTTAGTGCCATAAGAATTAACCGAAGCTATAATAAT
** * **
71132235 -TCCGCACACTTAGTGCCATCTGAATTAACCGAAGCTATATTGGT
1 ATCCGCACACTTAGTGCCATAAGAATTAACCGAAGCTATAATAAT
71132279 AT-CGCACACTTAGTGCC
1 ATCCGCACACTTAGTGCC
71132296 TCAAGTAGCC
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
44 50 0.98
45 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (45 bp):
ATCCGCACACTTAGTGCCATAAGAATTAACCGAAGCTATAATAAT
Found at i:71133332 original size:7 final size:7
Alignment explanation
Indices: 71133320--71133355 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
71133310 TTAGGTCCTT
71133320 TTTTACA
1 TTTTACA
71133327 TTTTACA
1 TTTTACA
71133334 TTTTACA
1 TTTTACA
71133341 TTTTACA
1 TTTTACA
71133348 TTTTACA
1 TTTTACA
71133355 T
1 T
71133356 ACGAAGGATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.28, C:0.14, G:0.00, T:0.58
Consensus pattern (7 bp):
TTTTACA
Found at i:71157085 original size:19 final size:20
Alignment explanation
Indices: 71157057--71157097 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
71157047 TACGATCTCT
*
71157057 AAAATCTATA-AAACAAAGA
1 AAAATATATACAAACAAAGA
*
71157076 AAAATATATACACACAAAGA
1 AAAATATATACAAACAAAGA
71157096 AA
1 AA
71157098 GCTAACTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.68, C:0.12, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAATATATACAAACAAAGA
Found at i:71159173 original size:27 final size:27
Alignment explanation
Indices: 71158750--71159170 Score: 574
Period size: 27 Copynumber: 15.6 Consensus size: 27
71158740 TTAGTTTACC
*
71158750 AAATTACCAAAATATCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
71158777 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
71158804 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
71158831 AAATTACCAAAATACCGTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
71158858 AAATTACTAAAA-ACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
71158884 AAATCACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
71158911 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
71158938 AAATTACCAAAATGCCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
71158965 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
71158992 AAATTCCCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
71159019 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
71159046 AAATTATAAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
71159073 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
71159100 AAATTACCAAAAAACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
71159127 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
71159154 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
71159171 TTGTAGGGTA
Statistics
Matches: 344, Mismatches: 49, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 21 0.06
27 323 0.94
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:71159185 original size:27 final size:27
Alignment explanation
Indices: 71159155--71159485 Score: 349
Period size: 27 Copynumber: 12.3 Consensus size: 27
71159145 TGATTTGTGA
*
71159155 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
** * *
71159182 AATTACTGAAATACCCCTATATGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
71159209 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* ** * * *
71159236 AATTATCGCAATACCCTTATAGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
*
71159263 AATTACCAGAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
71159290 AATTACCAGAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* **
71159317 AATTACCGAAATACCTTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*** * *
71159344 AATTATTGAAATACCCCTGCAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
71159371 AATTATCACAATACACCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
71159398 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
71159425 AATTACAAAAATACCTCTGTAGGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
71159452 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
71159478 AATTACCA
1 AATTACCA
71159486 TTTTGCCCCT
Statistics
Matches: 252, Mismatches: 52, Indels: 1
0.83 0.17 0.00
Matches are distributed among these distances:
26 15 0.06
27 237 0.94
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:71159198 original size:81 final size:80
Alignment explanation
Indices: 71158750--71159227 Score: 546
Period size: 81 Copynumber: 5.9 Consensus size: 80
71158740 TTAGTTTACC
* * * *
71158750 AAATTACCAAAATATCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATA-CCCTTGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAA
71158815 ATACCCCTGGTTTGTA
65 ATACCCCTGGTTTGTA
* * * * *
71158831 AAATTACCAAAATACCGTTGGTTTGTAAAATTACTAAAA-ACCCCTGGTTTATAAAATCACTAGA
1 AAATTACCAAAATACCCTT-GTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAA
* *
71158895 ATACCCTTGGTTTATA
65 ATACCCCTGGTTTGTA
* * * * **
71158911 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATGCCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATA-CCCTTGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAA
71158976 ATACCCCTGGTTTGTA
65 ATACCCCTGGTTTGTA
* * * **
71158992 AAATTCCCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATAAAA
1 AAATTACCAAAATA-CCCTTGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAA
71159057 ATACCCCTGGTTTGTA
65 ATACCCCTGGTTTGTA
* * * *
71159073 AAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAAAACCCCTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCC-TTGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAA
* * *
71159138 ATACCCTTGATTTGTG
65 ATACCCCTGGTTTGTA
** * * * * * *
71159154 AAATTACCAAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCT-ATATGGTAGAATTACCGA
1 AAATTACCAAAATACCCTTGT-TTGTAAAATTACTAAAATACCCCTGGT-TTGTAAAATTACCAA
71159218 AATACCCCTG
64 AATACCCCTG
71159228 TAGGGTAGAA
Statistics
Matches: 343, Mismatches: 48, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
80 79 0.23
81 264 0.77
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCTTGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAA
TACCCCTGGTTTGTA
Found at i:71159240 original size:81 final size:81
Alignment explanation
Indices: 71159155--71159458 Score: 396
Period size: 81 Copynumber: 3.8 Consensus size: 81
71159145 TGATTTGTGA
* * *
71159155 AATTACCAAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATATGGTAGAATTACCGA-A
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACC-ACA
71159219 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * * * * *
71159236 AATTATCGCAATACCCTTATAGGGTAAAATTAC-CAGAATACCCCTGTAGGGTAGAATTACCAGA
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGA-AATACCCCTGTAGGGTAGAATTACCACA
71159300 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * * * *
71159317 AATTACCGAAATACCTTTGTAGGGTAGAATTATTGAAATACCCCTGCAAGGTAGAATTATCACAA
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCACAA
*
71159382 TACACCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* ** * *
71159398 AATTACCGAAATACCCCTGTAGGGTAGAATTACAAAAATACCTCTGTAGGGTGGAATTACC
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACC
71159459 GAGATACCTT
Statistics
Matches: 190, Mismatches: 30, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
80 2 0.01
81 187 0.98
82 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (81 bp):
AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCACAA
TACCCCTGTAGGGTAG
Found at i:71159954 original size:22 final size:22
Alignment explanation
Indices: 71159910--71159974 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
71159900 CTAAAGCCTT
* * **
71159910 CTGATTATGGCTTTGTGTTAAC
1 CTGAATATGGCTATGTGCCAAC
71159932 CT-ACATATGGCTATGTGCCAAC
1 CTGA-ATATGGCTATGTGCCAAC
* *
71159954 CTGATTATGGCTGTGTGCCAA
1 CTGAATATGGCTATGTGCCAA
71159975 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGAATATGGCTATGTGCCAAC
Found at i:71160163 original size:27 final size:27
Alignment explanation
Indices: 71160133--71160234 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
71160123 ATTCTGTTAA
* *
71160133 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
71160160 GTGGCTATGCCACAAATATCT-TTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
71160187 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
71160214 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
71160235 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 7 0.10
27 54 0.81
28 6 0.09
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:71160417 original size:31 final size:31
Alignment explanation
Indices: 71160379--71160438 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
71160369 ACATTCTGAT
71160379 TTTTGATTCTATTACCTGATACTGATTCTCA
1 TTTTGATTCTATTACCTGATACTGATTCTCA
*
71160410 TTTTGATTCTGTTACCTGATACTGATTCT
1 TTTTGATTCTATTACCTGATACTGATTCT
71160439 GATTCTGTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (31 bp):
TTTTGATTCTATTACCTGATACTGATTCTCA
Found at i:71160440 original size:6 final size:6
Alignment explanation
Indices: 71160371--71160484 Score: 56
Period size: 6 Copynumber: 18.3 Consensus size: 6
71160361 TTGCATTCAC
* * * *
71160371 ATTCTG ATTTTTG ATTCT- ATTACCTG ATACTG ATTCTC ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
71160421 -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTTTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
71160471 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
71160485 AATGTTTCTT
Statistics
Matches: 80, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
5 7 0.09
6 56 0.70
7 13 0.16
8 4 0.05
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:71160441 original size:25 final size:25
Alignment explanation
Indices: 71160413--71160467 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
71160403 ATTCTCATTT
* *
71160413 TGATTCTGTTACCTGATACTGATTC
1 TGATTCTGTCACCTAATACTGATTC
*
71160438 TGATTCTGTCACCTAATTCTGATTC
1 TGATTCTGTCACCTAATACTGATTC
71160463 TGATT
1 TGATT
71160468 TTGATTCTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (25 bp):
TGATTCTGTCACCTAATACTGATTC
Found at i:71162465 original size:27 final size:27
Alignment explanation
Indices: 71162441--71162889 Score: 547
Period size: 27 Copynumber: 16.6 Consensus size: 27
71162431 TTAGTTTGCC
71162441 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
71162468 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
71162495 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
71162522 AAATTACCAAAATACCTTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
71162549 AAAGTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
71162576 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
71162603 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
71162630 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
71162657 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
71162684 AAATTACTAAAATACCCTTTTTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
71162711 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
71162738 AAATTACCAAAATACCCCAGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * * *
71162765 AAATTATTAAAATACTCATAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * ** *
71162792 AAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
71162819 AAATTACCAAAATATCCCTGGTTGGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
71162846 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
71162873 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
71162890 TTGTAGGGTA
Statistics
Matches: 353, Mismatches: 69, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 353 1.00
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:71162510 original size:54 final size:54
Alignment explanation
Indices: 71162441--71162889 Score: 619
Period size: 54 Copynumber: 8.3 Consensus size: 54
71162431 TTAGTTTGCC
*
71162441 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
71162495 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCTTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
71162549 AAAGTACCAAAATACCCCTGGTTTGTAAAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
71162603 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* ** *
71162657 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTTTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
** *
71162711 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCAGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
** * * * * **
71162765 AAATTATTAAAATACTCATAGTTTGTAAAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * *
71162819 AAATTACCAAAATATCCCTGGTTGGTAAAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
**
71162873 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
71162890 TTGTAGGGTA
Statistics
Matches: 344, Mismatches: 51, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 344 1.00
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:71162904 original size:27 final size:27
Alignment explanation
Indices: 71162874--71163201 Score: 409
Period size: 27 Copynumber: 12.2 Consensus size: 27
71162864 TGATTTGTGA
*
71162874 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
71162901 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
71162928 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
71162955 AATTA-TCGCAATACCCCTGTAGGGTAA
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
71162982 AATTAC-CAGAATACCCCTGTAGGGTAG
1 AATTACTGA-AATACCCCTGTAGGGTAG
71163009 AATTACT-AGAATACCCCTGTAGGGTAG
1 AATTACTGA-AATACCCCTGTAGGGTAG
* *
71163036 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
71163063 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
71163090 AATTA-TCGCAATACCCCTGTAAGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
71163117 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
71163144 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
71163171 AATTACCGAGATA-CCTTGTGGGGTA-
1 AATTACTGAAATACCCCTGTAGGGTAG
71163196 AATTAC
1 AATTAC
71163202 CATTTTGCCC
Statistics
Matches: 270, Mismatches: 24, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
25 6 0.02
26 11 0.04
27 252 0.93
28 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:71163681 original size:22 final size:22
Alignment explanation
Indices: 71163629--71163693 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
71163619 TTAAAGCCTT
* *
71163629 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
71163651 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
71163673 CTGATTATGGCTGTGTACCAA
1 CTGATTATGGCTCTGTGCCAA
71163694 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:71163882 original size:27 final size:26
Alignment explanation
Indices: 71163852--71163953 Score: 87
Period size: 27 Copynumber: 3.8 Consensus size: 26
71163842 ATTCTGTTAA
* * *
71163852 GTGGCTTTGCCATATTATTTGTTTCTG
1 GTGGCTATGCCATAATATCTG-TTCTG
*
71163879 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCA-TAATATCTGTTCTG
* *
71163906 GTGGCTCTGCCATAATAACTGTATCTG
1 GTGGCTATGCCATAATATCTGT-TCTG
* * * *
71163933 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCATAATATCTG
71163954 ATAACTGAGC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 8 0.13
27 48 0.77
28 6 0.10
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.38
Consensus pattern (26 bp):
GTGGCTATGCCATAATATCTGTTCTG
Found at i:71163933 original size:54 final size:53
Alignment explanation
Indices: 71163852--71163953 Score: 123
Period size: 54 Copynumber: 1.9 Consensus size: 53
71163842 ATTCTGTTAA
* * ** * *
71163852 GTGGCTTTGCCATATTATTTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCATAATAACTGTATCTGGTGACTATGCCAC-AATATCTGTTCTG
* *
71163906 GTGGCTCTGCCATAATAACTGTATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCATAATAACTGTATCTGGTGACTATGCCACAATATCTG
71163954 ATAACTGAGC
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 8 0.20
54 32 0.80
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.38
Consensus pattern (53 bp):
GTGGCTCTGCCATAATAACTGTATCTGGTGACTATGCCACAATATCTGTTCTG
Done.