Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 216 of 352
Found at i:71164128 original size:6 final size:6
Alignment explanation
Indices: 71164090--71164209 Score: 86
Period size: 6 Copynumber: 19.3 Consensus size: 6
71164080 TTGCATTCAC
* * *
71164090 ATTCTG ATTTTTG ATTCT- ATTACTTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
71164140 -TTACCTG ATACTG ATTTTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
71164190 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
71164210 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
5 7 0.08
6 65 0.72
7 14 0.16
8 4 0.04
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:71164136 original size:31 final size:31
Alignment explanation
Indices: 71164090--71164201 Score: 143
Period size: 31 Copynumber: 3.6 Consensus size: 31
71164080 TTGCATTCAC
* *
71164090 ATTCTGATTTTTGATTCTATTACTTGATACTG
1 ATTCTGA-TTCTGATTCTATTACCTGATACTG
* *
71164122 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTATTACCTGATACTG
* * * *
71164153 ATTTTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTATTACCTGATACTG
71164184 ATTCTGATTCTGATTCTA
1 ATTCTGATTCTGATTCTA
71164202 GTTCTGATAA
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 65 0.90
32 7 0.10
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATTACCTGATACTG
Found at i:71164178 original size:25 final size:24
Alignment explanation
Indices: 71164114--71164197 Score: 91
Period size: 25 Copynumber: 3.4 Consensus size: 24
71164104 TTCTATTACT
* *
71164114 TGATACTGATTCTGATTTTGATTC
1 TGATTCTGATACTGATTTTGATTC
71164138 TG-TTACCTGATACTGATTTTGATTC
1 TGATT--CTGATACTGATTTTGATTC
*
71164163 TGATTCTG-TCACCTGATTCTGATTC
1 TGATTCTGAT-A-CTGATTTTGATTC
71164188 TGATTCTGAT
1 TGATTCTGAT
71164198 TCTAGTTCTG
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
23 2 0.04
24 6 0.12
25 40 0.78
26 3 0.06
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.48
Consensus pattern (24 bp):
TGATTCTGATACTGATTTTGATTC
Found at i:71169119 original size:43 final size:40
Alignment explanation
Indices: 71169035--71169188 Score: 139
Period size: 42 Copynumber: 3.6 Consensus size: 40
71169025 TACTACACAA
* * * *
71169035 ATGCCATATCTCAAATATGGTCTTACATGAGATATAGTATCG
1 ATGCCATATC-CCAATATGGTCTTACACGAAATCTA-TATCG
*
71169077 ATGCCAATAGCCCAACTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCCAA-TATGGTCTTACACGAAATCT-ATATCG
* * *
71169120 ATTCCATATTCCATATATGGTCTTACAC-AAAGTCTTATATTG
1 ATGCCATATCCCA-ATATGGTCTTACACGAAA-TC-TATATCG
*
71169162 ATGCCATATCCCTGATATGGTCTTACA
1 ATGCCATATCCC-AATATGGTCTTACA
71169189 AATAGTCTCG
Statistics
Matches: 93, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
41 3 0.03
42 57 0.61
43 32 0.34
44 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (40 bp):
ATGCCATATCCCAATATGGTCTTACACGAAATCTATATCG
Found at i:71172076 original size:22 final size:22
Alignment explanation
Indices: 71172050--71172093 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
71172040 ATATTAAATA
71172050 ATTTATTAAAATAATAATTTAT
1 ATTTATTAAAATAATAATTTAT
* *
71172072 ATTTATTATATTAATAATTTAT
1 ATTTATTAAAATAATAATTTAT
71172094 TATATGACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTTATTAAAATAATAATTTAT
Found at i:71186558 original size:50 final size:49
Alignment explanation
Indices: 71186313--71186558 Score: 293
Period size: 50 Copynumber: 5.0 Consensus size: 49
71186303 ACACTGCTGT
*
71186313 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTG--A
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATA
* ** * ** *
71186360 TAT--GTGTTAGTGTAAGACCATGTCTGGGACATGGCATTGGCACCGACA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGATA
* * * *
71186408 GATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCTTGATA
*
71186458 TATGAGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCTTCGATA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTT-GATA
* *
71186508 TATGAGAGCCAGTGTAAGACCATATCTGGGATATGGCATCGGCATTGATA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGATA
71186558 T
1 T
71186559 GTGTAAGATT
Statistics
Matches: 172, Mismatches: 19, Indels: 13
0.84 0.09 0.06
Matches are distributed among these distances:
45 34 0.20
46 1 0.01
47 3 0.02
48 3 0.02
49 3 0.02
50 124 0.72
51 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATA
Found at i:71189872 original size:15 final size:15
Alignment explanation
Indices: 71189854--71189886 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
71189844 TGGATTCTCG
71189854 TATCATGGATTTCTT
1 TATCATGGATTTCTT
*
71189869 TATCTTGGATTTCTT
1 TATCATGGATTTCTT
71189884 TAT
1 TAT
71189887 TCTGGGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (15 bp):
TATCATGGATTTCTT
Found at i:71192735 original size:49 final size:50
Alignment explanation
Indices: 71192657--71192889 Score: 294
Period size: 49 Copynumber: 4.7 Consensus size: 50
71192647 ATCTATTGTG
*
71192657 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
* *
71192707 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA--TGCATACGCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAT-CG-GATAA-TT
* * * * **
71192757 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
* *
71192807 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
* *
71192857 -GGTCGCATGTGTAGTACCAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
71192890 TGCGTACTAG
Statistics
Matches: 157, Mismatches: 20, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
47 3 0.02
48 2 0.01
49 66 0.42
50 48 0.31
51 33 0.21
52 1 0.01
53 4 0.03
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
Found at i:71196701 original size:6 final size:6
Alignment explanation
Indices: 71196683--71196795 Score: 72
Period size: 6 Copynumber: 18.3 Consensus size: 6
71196673 AAGAAACATT
* *
71196683 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
71196732 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCGGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
71196782 ATCAAA ATCAGA AT
1 ATCAGA ATCAGA AT
71196796 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 14, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
5 6 0.07
6 64 0.78
7 9 0.11
8 3 0.04
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:71196728 original size:25 final size:25
Alignment explanation
Indices: 71196697--71196792 Score: 106
Period size: 25 Copynumber: 3.8 Consensus size: 25
71196687 GAACTAGAAT
* *
71196697 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
71196722 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
71196747 CAGAATCAAAATCAGAATC-GGTAT
1 CAGAATCAGAATCAGAATCAGGTAA
*
71196771 CAGGTAA-CAGAATCAAAATCAG
1 CA-G-AATCAGAATCAGAATCAG
71196793 AATGTGAATG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.10
25 51 0.85
26 3 0.05
ACGTcount: A:0.46, C:0.16, G:0.20, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:71196728 original size:31 final size:29
Alignment explanation
Indices: 71196692--71196795 Score: 108
Period size: 31 Copynumber: 3.6 Consensus size: 29
71196682 TATCAGAACT
* * *
71196692 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATC-G-ATCAGGTAAC
*
71196723 AGAATCAGAATCAG--T--ATCAGGTAAC
1 AGAATCAAAATCAGAATCGATCAGGTAAC
71196748 AGAATCAAAATCAGAATCGGTATCAGGTAAC
1 AGAATCAAAATCAGAATC-G-ATCAGGTAAC
71196779 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
71196796 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
25 21 0.33
27 1 0.02
29 1 0.02
31 41 0.64
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.19
Consensus pattern (29 bp):
AGAATCAAAATCAGAATCGATCAGGTAAC
Found at i:71197227 original size:27 final size:27
Alignment explanation
Indices: 71197197--71197369 Score: 231
Period size: 27 Copynumber: 6.4 Consensus size: 27
71197187 GGGGCAAAAT
* * *
71197197 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
71197224 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
71197251 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
71197278 GGTCATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
71197305 GGTAATTCTACCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* *
71197332 GGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
71197359 AGTAATTCTAC
1 GGTAATTCTAC
71197370 AAAGAAGGGG
Statistics
Matches: 127, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.02
27 123 0.97
28 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:71197263 original size:54 final size:54
Alignment explanation
Indices: 71197197--71197369 Score: 258
Period size: 54 Copynumber: 3.2 Consensus size: 54
71197187 GGGGCAAAAT
* * *
71197197 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
71197251 GGTATTTCTACCCTACAAGGGTATTTCGGTCATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
71197305 GGTAATTCTACCCTAC-AGGAGTATTTCGGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
71197359 AGTAATTCTAC
1 GGTAATTCTAC
71197370 AAAGAAGGGG
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 3 0.03
54 105 0.97
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:71197378 original size:27 final size:27
Alignment explanation
Indices: 71197348--71197399 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
71197338 TCTACCCTAC
71197348 AGGGGTATTTCAGTAATTCTACAAAGA
1 AGGGGTATTTCAGTAATTCTACAAAGA
** *
71197375 AGGGGTATTTTGGTAATTTTACAAA
1 AGGGGTATTTCAGTAATTCTACAAA
71197400 CCAATGGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.35
Consensus pattern (27 bp):
AGGGGTATTTCAGTAATTCTACAAAGA
Found at i:71197379 original size:81 final size:81
Alignment explanation
Indices: 71197215--71197392 Score: 243
Period size: 81 Copynumber: 2.2 Consensus size: 81
71197205 TACCCCACAA
* * *
71197215 GGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
1 GGGTATTTCGGTAATTCTACCCTACAGGAGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAG
* ** *
71197280 TCATTCTACCCTATAG
66 TAATTCTACCAAAAAG
*
71197296 GGGTATTTCGGTAATTCTACCCTACAGGAGTATTTCGGT-TATTCTACCCTACAGGGGTATTTCA
1 GGGTATTTCGGTAATTCTACCCTACAGGAGTATTTCGGTAT-TTCTACCCTACAAGGGTATTTCA
71197360 GTAATTCTA-CAAAGAAG
65 GTAATTCTACCAAA-AAG
*
71197377 GGGTATTTTGGTAATT
1 GGGTATTTCGGTAATT
71197393 TTACAAACCA
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 3 0.03
81 83 0.97
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (81 bp):
GGGTATTTCGGTAATTCTACCCTACAGGAGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAG
TAATTCTACCAAAAAG
Found at i:71197383 original size:54 final size:54
Alignment explanation
Indices: 71197197--71197392 Score: 227
Period size: 54 Copynumber: 3.6 Consensus size: 54
71197187 GGGGCAAAAT
* * *
71197197 GGTAATTTTACCCCACAA-GGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTA-AAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
71197251 GGTATTTCTACCCTACAA-GGGTATTTCGGTCATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTA-AAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
71197305 GGTAATTCTACCCTACAGGAGTATTTCGGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTAAAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* ** *
71197359 AGTAATTCTA-CAAAGAAGGGGTATTTTGGTAATT
1 GGTAATTCTACCCTA-AAGGGGTATTTCGGTAATT
71197393 TTACAAACCA
Statistics
Matches: 122, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 3 0.02
54 119 0.98
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTAAAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:71197408 original size:27 final size:27
Alignment explanation
Indices: 71197378--71197475 Score: 115
Period size: 27 Copynumber: 3.6 Consensus size: 27
71197368 ACAAAGAAGG
*
71197378 GGTATTTTGGTAATTTTACAAACCAAT
1 GGTATTTTGGTAATTTTATAAACCAAT
** * * *
71197405 GGTATTTTGGTAATTTTATTGATCGAG
1 GGTATTTTGGTAATTTTATAAACCAAT
*
71197432 GGTATTTTGGTAATTTTGTAAACCAAT
1 GGTATTTTGGTAATTTTATAAACCAAT
* *
71197459 AGTATTTTAGTAATTTT
1 GGTATTTTGGTAATTTT
71197476 TTATATTGAG
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTATAAACCAAT
Found at i:71197409 original size:54 final size:54
Alignment explanation
Indices: 71197351--71197474 Score: 135
Period size: 54 Copynumber: 2.3 Consensus size: 54
71197341 ACCCTACAGG
*
71197351 GGTATTTCAGTAATTCTACAAAGA-AG-GGGTATTTTGGTAATTTTACAAACCAAT
1 GGTATTTTAGTAATT-T-CAAAGATAGAGGGTATTTTGGTAATTTTACAAACCAAT
* * ** * **
71197405 GGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTCAAAGATAGAGGGTATTTTGGTAATTTTACAAACCAAT
*
71197459 AGTATTTTAGTAATTT
1 GGTATTTTAGTAATTT
71197475 TTTATATTGA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
52 3 0.05
53 2 0.03
54 53 0.91
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (54 bp):
GGTATTTTAGTAATTTCAAAGATAGAGGGTATTTTGGTAATTTTACAAACCAAT
Found at i:71197497 original size:54 final size:54
Alignment explanation
Indices: 71197385--71197507 Score: 140
Period size: 54 Copynumber: 2.3 Consensus size: 54
71197375 AGGGGTATTT
** * * ***
71197385 TGGTAATTTTACAAACCAATGGTATTTTGGTAATTTTATTGATCGAGGGTATTT
1 TGGTAATTTTGTAAACCAATAGTATTTTAGTAATTTTATTGATCGAGGGTAAAA
* *
71197439 TGGTAATTTTGTAAACCAATAGTATTTTAGTAATTTT-TTATATTGAGGGTAAAA
1 TGGTAATTTTGTAAACCAATAGTATTTTAGTAATTTTATT-GATCGAGGGTAAAA
*
71197493 TGGTAATTCTGTAAA
1 TGGTAATTTTGTAAA
71197508 TCGAGGGTAA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 2 0.03
54 56 0.97
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.44
Consensus pattern (54 bp):
TGGTAATTTTGTAAACCAATAGTATTTTAGTAATTTTATTGATCGAGGGTAAAA
Found at i:71197498 original size:27 final size:27
Alignment explanation
Indices: 71197483--71197663 Score: 274
Period size: 27 Copynumber: 6.7 Consensus size: 27
71197473 TTTTTATATT
71197483 GAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
71197510 GAGGGTAAGACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
71197537 GAGGG-AAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
71197563 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
71197590 GAGGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
71197617 GAGGGTAAAACGATAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
71197644 GAGGGTAAAATGGTAATTCT
1 GAGGGTAAAATGGTAATTCT
71197664 ATCTTACAGG
Statistics
Matches: 135, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 22 0.16
27 113 0.84
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTGTAAATC
Found at i:71197526 original size:54 final size:54
Alignment explanation
Indices: 71197483--71197665 Score: 314
Period size: 54 Copynumber: 3.4 Consensus size: 54
71197473 TTTTTATATT
* * *
71197483 GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAGACGGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
71197537 GAGGG-AAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
*
71197590 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
*
71197644 GAGGGTAAAATGGTAATTCTAT
1 GAGGGTAAAATAGTAATTCTAT
71197666 CTTACAGGAG
Statistics
Matches: 123, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
53 50 0.41
54 73 0.59
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (54 bp):
GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
Found at i:71197581 original size:80 final size:81
Alignment explanation
Indices: 71197483--71197663 Score: 276
Period size: 80 Copynumber: 2.2 Consensus size: 81
71197473 TTTTTATATT
* * *
71197483 GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAGACGGTAATTCTGTAAATCGAGGG-AAAAT
1 GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAA-
71197547 AG-TAATTCTATAAATC
65 AGATAATTCTATAAATC
* * *
71197563 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
1 GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAA
*
71197628 GATAATTCTGTAAATC
66 GATAATTCTATAAATC
71197644 GAGGGTAAAATGGTAATTCT
1 GAGGGTAAAATGGTAATTCT
71197664 ATCTTACAGG
Statistics
Matches: 91, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
80 55 0.60
81 36 0.40
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (81 bp):
GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAA
GATAATTCTATAAATC
Found at i:71202057 original size:29 final size:29
Alignment explanation
Indices: 71201999--71202127 Score: 127
Period size: 29 Copynumber: 4.5 Consensus size: 29
71201989 ACGTGTTACA
* * * *
71201999 ATAGCCACAAAAACTTC-CTTTAATAGAG
1 ATAGCCACAAAGACTTCTTTTTAACAAAG
* *
71202027 ATAACCATAAAGACTTCTTTTTAACAAAG
1 ATAGCCACAAAGACTTCTTTTTAACAAAG
* * * *
71202056 ATTGCCACAGAGGCTTCTTTATAACAAAG
1 ATAGCCACAAAGACTTCTTTTTAACAAAG
* *
71202085 ATCGCCACAAAGACTTC-CTTTAATCAAAG
1 ATAGCCACAAAGACTTCTTTTTAA-CAAAG
71202114 ATAGCCACAAAGAC
1 ATAGCCACAAAGAC
71202128 ACTTCTTCAG
Statistics
Matches: 81, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
28 18 0.22
29 63 0.78
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.25
Consensus pattern (29 bp):
ATAGCCACAAAGACTTCTTTTTAACAAAG
Found at i:71204729 original size:2 final size:2
Alignment explanation
Indices: 71204722--71204758 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
71204712 TAAATACTGC
* *
71204722 CT CT CT CT CT CT CT CT CT CT CT CT CC CT CT CC CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
71204759 AAGTCTGAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (2 bp):
CT
Found at i:71214989 original size:32 final size:33
Alignment explanation
Indices: 71214940--71215013 Score: 116
Period size: 32 Copynumber: 2.3 Consensus size: 33
71214930 CCATGTTCCT
* *
71214940 TGAACAAA-ATCTTGAATTTGGGTAAGAAAAA-
1 TGAAGAAACATCTTGAATTTGGGTAAAAAAAAC
71214971 TGAAGAAACATCTTGAATTTGGGTAAAAAAAAC
1 TGAAGAAACATCTTGAATTTGGGTAAAAAAAAC
71215004 TGAAGAAACA
1 TGAAGAAACA
71215014 ATTCATGCAG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 7 0.18
32 22 0.56
33 10 0.26
ACGTcount: A:0.50, C:0.08, G:0.19, T:0.23
Consensus pattern (33 bp):
TGAAGAAACATCTTGAATTTGGGTAAAAAAAAC
Found at i:71217235 original size:20 final size:19
Alignment explanation
Indices: 71217210--71217254 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
71217200 GTATGCTAAC
* *
71217210 AAATAATTTAAAAATTATAA
1 AAATAATATAAAAAGTA-AA
71217230 AAATAATATAAAAAGTAAA
1 AAATAATATAAAAAGTAAA
71217249 AAATAA
1 AAATAA
71217255 AAAGTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (19 bp):
AAATAATATAAAAAGTAAA
Found at i:71217274 original size:14 final size:14
Alignment explanation
Indices: 71217237--71217267 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
71217227 TAAAAATAAT
71217237 ATAAAAAGTAAAAA
1 ATAAAAAGTAAAAA
71217251 ATAAAAAGTAAAAA
1 ATAAAAAGTAAAAA
71217265 ATA
1 ATA
71217268 GGGAGTACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.16
Consensus pattern (14 bp):
ATAAAAAGTAAAAA
Found at i:71218964 original size:19 final size:19
Alignment explanation
Indices: 71218937--71218975 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
71218927 ATATAAAATA
71218937 TTATAAATTTCAATGTTAT
1 TTATAAATTTCAATGTTAT
*
71218956 TTATGAATTTCAATGTTAT
1 TTATAAATTTCAATGTTAT
71218975 T
1 T
71218976 AAACATACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (19 bp):
TTATAAATTTCAATGTTAT
Found at i:71219670 original size:16 final size:17
Alignment explanation
Indices: 71219642--71219673 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
71219632 TTAAGTTTTA
71219642 ATTAAGATTTATTTATT
1 ATTAAGATTTATTTATT
71219659 ATTAAG-TTTATTTAT
1 ATTAAGATTTATTTAT
71219674 GACATTGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.59
Consensus pattern (17 bp):
ATTAAGATTTATTTATT
Found at i:71219860 original size:15 final size:15
Alignment explanation
Indices: 71219840--71219869 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
71219830 TTAAACAATG
71219840 AAAAGATAAGAAAAT
1 AAAAGATAAGAAAAT
71219855 AAAAGATAAGAAAAT
1 AAAAGATAAGAAAAT
71219870 CTCAAATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (15 bp):
AAAAGATAAGAAAAT
Found at i:71222530 original size:13 final size:13
Alignment explanation
Indices: 71222512--71222539 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
71222502 ATATATTATA
71222512 AATATTTTGTGTT
1 AATATTTTGTGTT
71222525 AATATTTTGTGTT
1 AATATTTTGTGTT
71222538 AA
1 AA
71222540 AAAAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:71227966 original size:40 final size:40
Alignment explanation
Indices: 71227911--71228005 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
71227901 TATGTGCATA
71227911 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
*
71227951 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
* * *
71227991 GTATTTGTGCTGGTT
1 GCATTCGTGCGGGTT
71228006 GTTACATCCA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
Found at i:71234698 original size:6 final size:6
Alignment explanation
Indices: 71234680--71234758 Score: 81
Period size: 6 Copynumber: 12.8 Consensus size: 6
71234670 AAGAGTCTGT
* * *
71234680 AGAAAA AGTAAA AGAAAA AGAACA AGAAAA A-AATAA AGAAAA ATAAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAA-AA AGAAAA AGAAAA
71234728 AGAAAA AG-AAA AGAAAA TCGAGAAAA AGAAA
1 AGAAAA AGAAAA AGAAAA ---AGAAAA AGAAA
71234759 GGAAAATTGA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
5 7 0.11
6 46 0.75
7 2 0.03
9 6 0.10
ACGTcount: A:0.77, C:0.03, G:0.15, T:0.05
Consensus pattern (6 bp):
AGAAAA
Found at i:71234753 original size:20 final size:20
Alignment explanation
Indices: 71234728--71234773 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
71234718 AAAAATAAAA
71234728 AGAAAAAGAAAAGAAAATCG
1 AGAAAAAGAAAAGAAAATCG
* *
71234748 AGAAAAAGAAAGGAAAATTG
1 AGAAAAAGAAAAGAAAATCG
71234768 AGAAAA
1 AGAAAA
71234774 TTGAGGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.70, C:0.02, G:0.22, T:0.07
Consensus pattern (20 bp):
AGAAAAAGAAAAGAAAATCG
Found at i:71234754 original size:42 final size:42
Alignment explanation
Indices: 71234682--71234765 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 42
71234672 GAGTCTGTAG
* *
71234682 AAAAAGTAAAAGAAAAAGAACAAGAAAAAAATAAAGAAAAAT
1 AAAAAGAAAAAGAAAAAGAACAAGAAAAAAAGAAAGAAAAAT
* *
71234724 AAAAAGAAAAAG-AAAAGAA-AATCGAGAAAAAGAAAGGAAAAT
1 AAAAAGAAAAAGAAAAAGAACAA--GAAAAAAAGAAAGAAAAAT
71234766 TGAGAAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
40 2 0.06
41 7 0.19
42 27 0.75
ACGTcount: A:0.76, C:0.02, G:0.15, T:0.06
Consensus pattern (42 bp):
AAAAAGAAAAAGAAAAAGAACAAGAAAAAAAGAAAGAAAAAT
Found at i:71240679 original size:43 final size:43
Alignment explanation
Indices: 71240642--71240732 Score: 119
Period size: 43 Copynumber: 2.1 Consensus size: 43
71240632 CACGGGCTGG
* *
71240642 GACACAACCATGTGTCTCTACTTCGAATGCCCACACGGCCTAA
1 GACACAACCATGTGTCCCTACTTCGAATACCCACACGGCCTAA
*** * *
71240685 GACACGGGCGTGTGTCCCTACTTCGAATACCCACACAGCCTAA
1 GACACAACCATGTGTCCCTACTTCGAATACCCACACGGCCTAA
71240728 GACAC
1 GACAC
71240733 GGGCGTATGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.27, C:0.35, G:0.19, T:0.19
Consensus pattern (43 bp):
GACACAACCATGTGTCCCTACTTCGAATACCCACACGGCCTAA
Found at i:71240733 original size:43 final size:43
Alignment explanation
Indices: 71240652--71240743 Score: 148
Period size: 43 Copynumber: 2.1 Consensus size: 43
71240642 GACACAACCA
* * *
71240652 TGTGTCTCTACTTCGAATGCCCACACGGCCTAAGACACGGGCG
1 TGTGTCCCTACTTCGAATACCCACACAGCCTAAGACACGGGCG
71240695 TGTGTCCCTACTTCGAATACCCACACAGCCTAAGACACGGGCG
1 TGTGTCCCTACTTCGAATACCCACACAGCCTAAGACACGGGCG
*
71240738 TATGTC
1 TGTGTC
71240744 TTAGCCCTGT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.22
Consensus pattern (43 bp):
TGTGTCCCTACTTCGAATACCCACACAGCCTAAGACACGGGCG
Found at i:71246096 original size:17 final size:16
Alignment explanation
Indices: 71246074--71246107 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
71246064 GGGGATGATG
71246074 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
71246091 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
71246107 T
1 T
71246108 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:71253137 original size:16 final size:16
Alignment explanation
Indices: 71253112--71253178 Score: 62
Period size: 16 Copynumber: 3.8 Consensus size: 16
71253102 AAAGTTGATA
*
71253112 ATAATTAATATATATT
1 ATAATGAATATATATT
71253128 ATAATGAATATATTATATATT
1 ATAATG---A-A-TATATATT
*
71253149 AATAATTAATATATATT
1 -ATAATGAATATATATT
71253166 ATAATGAATATAT
1 ATAATGAATATAT
71253179 TATATATTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
16 17 0.40
17 8 0.19
18 1 0.02
19 2 0.05
20 1 0.02
21 8 0.19
22 5 0.12
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (16 bp):
ATAATGAATATATATT
Found at i:71253152 original size:38 final size:38
Alignment explanation
Indices: 71253110--71253194 Score: 170
Period size: 38 Copynumber: 2.2 Consensus size: 38
71253100 ATAAAGTTGA
71253110 TAATAATTAATATATATTATAATGAATATATTATATAT
1 TAATAATTAATATATATTATAATGAATATATTATATAT
71253148 TAATAATTAATATATATTATAATGAATATATTATATAT
1 TAATAATTAATATATATTATAATGAATATATTATATAT
71253186 TAATAATTA
1 TAATAATTA
71253195 TCATCCTTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (38 bp):
TAATAATTAATATATATTATAATGAATATATTATATAT
Found at i:71253184 original size:16 final size:16
Alignment explanation
Indices: 71253142--71253184 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
71253132 TGAATATATT
*
71253142 ATATATTA-ATAATTA
1 ATATATTATATAATGA
71253157 ATATA-TATTATAATGA
1 ATATATTA-TATAATGA
71253173 ATATATTATATA
1 ATATATTATATA
71253185 TTAATAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 2 0.08
15 5 0.21
16 15 0.62
17 2 0.08
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
ATATATTATATAATGA
Found at i:71253194 original size:7 final size:8
Alignment explanation
Indices: 71253110--71253194 Score: 67
Period size: 7 Copynumber: 11.2 Consensus size: 8
71253100 ATAAAGTTGA
71253110 TAATA-AT
1 TAATATAT
71253117 TAATATA-
1 TAATATAT
*
71253124 TATTATAAT
1 TAATAT-AT
*
71253133 GAATATAT
1 TAATATAT
71253141 T-ATATAT
1 TAATATAT
71253148 TAATA-AT
1 TAATATAT
71253155 TAATATA-
1 TAATATAT
*
71253162 TATTATAAT
1 TAATAT-AT
*
71253171 GAATATAT
1 TAATATAT
71253179 T-ATATAT
1 TAATATAT
71253186 TAATA-AT
1 TAATATAT
71253193 TA
1 TA
71253195 TCATCCTTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
7 40 0.65
8 14 0.23
9 8 0.13
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (8 bp):
TAATATAT
Found at i:71253302 original size:29 final size:30
Alignment explanation
Indices: 71253245--71253302 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
71253235 CTTTTGAAAA
* * *
71253245 TATTTACAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCAACCAAATTTTAT
71253275 TATTTACAAAAAGA-GCAACCAAATTTTA
1 TATTTACAAAAAGAGGCAACCAAATTTTA
71253303 AAAATACTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACCAAATTTTAT
Found at i:71262226 original size:15 final size:15
Alignment explanation
Indices: 71262206--71262274 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
71262196 GTATCTTGGG
71262206 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
71262221 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
71262236 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
71262251 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
71262266 TTTCTTTAT
1 TTTCTTTAT
71262275 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:71262275 original size:30 final size:30
Alignment explanation
Indices: 71262197--71262284 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
71262187 CATATATATG
* * * *
71262197 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
71262227 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
71262257 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
71262285 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:71267871 original size:47 final size:47
Alignment explanation
Indices: 71267817--71268369 Score: 890
Period size: 47 Copynumber: 11.6 Consensus size: 47
71267807 GTATATTTGA
*
71267817 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
71267864 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
71267911 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
71267960 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
71268009 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
71268056 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
71268103 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
71268152 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
71268199 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
71268246 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
71268293 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
71268340 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
71268370 TCCCGAAGGG
Statistics
Matches: 477, Mismatches: 25, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
47 338 0.71
49 139 0.29
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:71267979 original size:143 final size:142
Alignment explanation
Indices: 71267817--71268369 Score: 912
Period size: 143 Copynumber: 3.9 Consensus size: 142
71267807 GTATATTTGA
*
71267817 ATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTA
1 ATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
71267881 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
66 TATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
71267946 GAATGGCCAATGTG
129 GAATGGCCAATGTG
71267960 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * *
71268025 ATATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
65 ATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
71268090 AATGGCCAATGTG
130 AATGGCCAATGTG
71268103 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * *
71268168 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
65 ATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
*
71268233 AATGGCCGATGTG
130 AATGGCCAATGTG
71268246 ATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 ATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * *
71268310 TATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
71268370 TCCCGAAGGG
Statistics
Matches: 391, Mismatches: 17, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
141 100 0.26
143 202 0.52
145 89 0.23
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (142 bp):
ATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
TATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATGGCCAATGTG
Found at i:71276192 original size:40 final size:40
Alignment explanation
Indices: 71276131--71276313 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
71276121 TATTCGAATG
*
71276131 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
71276171 ATA-CCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCC-GGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
71276211 AAATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
71276251 ATATCCGGGCCTAGGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGG-CTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
71276292 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
71276314 TACTTGGGTT
Statistics
Matches: 124, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
39 13 0.10
40 77 0.62
41 31 0.25
42 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:71286369 original size:47 final size:48
Alignment explanation
Indices: 71286245--71286373 Score: 197
Period size: 48 Copynumber: 2.7 Consensus size: 48
71286235 CGGTTACACG
* *
71286245 TGTAACATGGTGCTAAGTGGATATACCACGATTTCATATATTGATACA
1 TGTAACATGGTGCTAAGTGGATATACCACGGTTACATATATTGATACA
* * * *
71286293 TGTAACGTGGTGCTATGTGGATATTCCACGGTTACATATATTGATTCA
1 TGTAACATGGTGCTAAGTGGATATACCACGGTTACATATATTGATACA
71286341 T-TAACATGGTGCTAAGTGGATATACCACGGTTA
1 TGTAACATGGTGCTAAGTGGATATACCACGGTTA
71286374 AACATGTAAC
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 29 0.40
48 43 0.60
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (48 bp):
TGTAACATGGTGCTAAGTGGATATACCACGGTTACATATATTGATACA
Found at i:71286407 original size:38 final size:38
Alignment explanation
Indices: 71286342--71286418 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
71286332 ATTGATTCAT
71286342 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
* * * *
71286380 TAACGTGGTGCTAAGTGGGTATGCCACGGTTATACATG
1 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
71286418 T
1 T
71286419 TAATTTGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (38 bp):
TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:71293954 original size:47 final size:48
Alignment explanation
Indices: 71293833--71293963 Score: 174
Period size: 48 Copynumber: 2.8 Consensus size: 48
71293823 GGAATGGAAA
* * *
71293833 AACGTTGTGCTAAGTGGATATACCACGATTACACGTATTGATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACATGT
* * * * *
71293881 AACATGGTGCTAAATGGATATGCCACGGTTACATATATTGATTCAT-T
1 AACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACATGT
*
71293928 AACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 AACGTGGTGCTAAGTGGATATACCACGGTTACACAT
71293964 GTAACGTGGT
Statistics
Matches: 70, Mismatches: 13, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
47 32 0.46
48 38 0.54
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (48 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACATGT
Found at i:71293978 original size:38 final size:38
Alignment explanation
Indices: 71293927--71294003 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
71293917 ATTGATTCAT
*
71293927 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
* *
71293965 TAACGTGGTGCTAAGTGGATATGCCACAGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
71294003 T
1 T
71294004 TAATTTGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
Found at i:71298962 original size:29 final size:26
Alignment explanation
Indices: 71298914--71298979 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
71298904 GCAACCCAAT
*
71298914 TTTTATTTTTAT-TTTCATTTTAGTTTA
1 TTTTATTTTTTTCTTTCATTTTA--TTA
*
71298941 TTTTATTTTTTTCTTATTATTTTATTA
1 TTTTATTTTTTTCTT-TCATTTTATTA
*
71298968 -TTTATTATTTTC
1 TTTTATTTTTTTC
71298980 AGATATTAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 11 0.32
27 14 0.41
28 2 0.06
29 7 0.21
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.76
Consensus pattern (26 bp):
TTTTATTTTTTTCTTTCATTTTATTA
Found at i:71304440 original size:26 final size:26
Alignment explanation
Indices: 71304398--71304446 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
71304388 TCTCTTGGTT
*
71304398 TTCTTTTTCTTTCTTTTTCAAAATTC
1 TTCTTTATCTTTCTTTTTCAAAATTC
71304424 TTCTTTAT-TTTCTTTTTCAAAAT
1 TTCTTTATCTTTCTTTTTCAAAAT
71304447 GGTTTGCCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.18, C:0.16, G:0.00, T:0.65
Consensus pattern (26 bp):
TTCTTTATCTTTCTTTTTCAAAATTC
Found at i:71305092 original size:21 final size:21
Alignment explanation
Indices: 71305068--71305126 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
71305058 GTCCCTGGTC
71305068 CACACAGGCATGTGCCT-CAGT
1 CACAC-GGCATGTGCCTCCAGT
* **
71305089 CACACGGTCGTGTGCCTCCCTT
1 CACACGG-CATGTGCCTCCAGT
71305111 CACACGGGCATGTGCC
1 CACAC-GGCATGTGCC
71305127 CCTCTTCACA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
20 2 0.06
21 13 0.42
22 14 0.45
23 2 0.06
ACGTcount: A:0.17, C:0.37, G:0.25, T:0.20
Consensus pattern (21 bp):
CACACGGCATGTGCCTCCAGT
Found at i:71305116 original size:22 final size:22
Alignment explanation
Indices: 71305088--71305136 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
71305078 TGTGCCTCAG
* *
71305088 TCACACGGTCGTGTGCCTCC-CT
1 TCACACGGGCATGTGCC-CCTCT
71305110 TCACACGGGCATGTGCCCCTCT
1 TCACACGGGCATGTGCCCCTCT
71305132 TCACA
1 TCACA
71305137 TGGGTGTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.14, C:0.41, G:0.20, T:0.24
Consensus pattern (22 bp):
TCACACGGGCATGTGCCCCTCT
Found at i:71308946 original size:28 final size:28
Alignment explanation
Indices: 71308913--71308989 Score: 109
Period size: 28 Copynumber: 2.8 Consensus size: 28
71308903 ACAGTAAACA
* * *
71308913 TGGCAAAGTCACCAGAGCAGTAATTACG
1 TGGCAAAGCCACCAAAACAGTAATTACG
71308941 TGGCAAAGCCACCAAAACAGTAATTACG
1 TGGCAAAGCCACCAAAACAGTAATTACG
* *
71308969 TGGCAAAGCCACTAATACAGT
1 TGGCAAAGCCACCAAAACAGT
71308990 GCTTCCTCCA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (28 bp):
TGGCAAAGCCACCAAAACAGTAATTACG
Found at i:71313274 original size:8 final size:8
Alignment explanation
Indices: 71313261--71313289 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
71313251 CATCAGGTAC
71313261 TTTAGCGA
1 TTTAGCGA
71313269 TTTAGCGA
1 TTTAGCGA
71313277 TTTAGCGA
1 TTTAGCGA
71313285 TTTAG
1 TTTAG
71313290 TCTATCAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.41
Consensus pattern (8 bp):
TTTAGCGA
Found at i:71315507 original size:27 final size:27
Alignment explanation
Indices: 71315477--71315535 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
71315467 TGTCATGTGA
*
71315477 AATTGAATGGCAAATTAATGTTACATG
1 AATTGAATGGCAAATTAATATTACATG
**
71315504 AATTGAATGTTAAATTAATATTACATG
1 AATTGAATGGCAAATTAATATTACATG
*
71315531 GATTG
1 AATTG
71315536 CATGAGTTGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (27 bp):
AATTGAATGGCAAATTAATATTACATG
Found at i:71325579 original size:49 final size:49
Alignment explanation
Indices: 71325358--71326172 Score: 1038
Period size: 49 Copynumber: 16.6 Consensus size: 49
71325348 CCCTTCGGGA
* * * * *
71325358 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71325405 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71325452 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71325499 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71325546 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71325595 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71325644 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71325693 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71325742 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCA-TC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
* * * * * **
71325789 ACATTGGCCATTCGGCCTTATCACATATA-TAT-ACACTT--TCACATTCATCACATTGGCCATT
1 -C-TT----A-TC--ACATAT-ATATACACTTTCACA-TTCATCACA-TCGGC-CATT----A--
71325850 CGGC
47 -GGC
71325854 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71325901 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71325950 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71325999 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71326046 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71326095 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71326144 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
71326173 TATTCAAATA
Statistics
Matches: 697, Mismatches: 36, Indels: 68
0.87 0.04 0.08
Matches are distributed among these distances:
46 1 0.00
47 226 0.32
48 1 0.00
49 402 0.58
50 1 0.00
53 6 0.01
54 12 0.02
55 6 0.01
56 12 0.02
57 6 0.01
58 12 0.02
59 6 0.01
61 2 0.00
63 2 0.00
64 1 0.00
65 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71325758 original size:145 final size:144
Alignment explanation
Indices: 71325358--71326172 Score: 1244
Period size: 145 Copynumber: 5.5 Consensus size: 144
71325348 CCCTTCGGGA
* * * * *
71325358 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
71325421 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCAC
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCAC
* * *
71325485 ATCGGCTATTAGGC
131 ATTGGCCATTCGGC
* *
71325499 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
*
71325562 ACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCAT
71325627 CACATTGGCCATTCGGC
128 CACATTGGCCATTCGGC
71325644 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
* * *
71325709 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATAT--A--TACAC-TT--T--
71325774 CATCGGCCATTCATCACATTGGCCATTCGGC
119 CA-----CATTCATCACATTGGCCATTCGGC
71325805 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
71325870 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCA
71325935 CATTGGCCATTCGGC
130 CATTGGCCATTCGGC
71325950 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
71326015 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCA
71326080 CATTGGCCATTCGGC
130 CATTGGCCATTCGGC
*
71326095 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
71326160 ACACTTTCACATT
64 ACACTTTCACATT
71326173 TATTCAAATA
Statistics
Matches: 631, Mismatches: 19, Indels: 42
0.91 0.03 0.06
Matches are distributed among these distances:
140 1 0.00
141 45 0.07
143 46 0.07
145 269 0.43
147 118 0.19
149 1 0.00
150 2 0.00
151 4 0.01
152 3 0.00
154 3 0.00
155 4 0.01
156 2 0.00
157 1 0.00
159 51 0.08
161 81 0.13
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (144 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCAC
ATTGGCCATTCGGC
Found at i:71325784 original size:16 final size:16
Alignment explanation
Indices: 71325765--71325801 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
71325755 TACACTTTCA
71325765 CATTCATCACATCGGC
1 CATTCATCACATCGGC
*
71325781 CATTCATCACATTGGC
1 CATTCATCACATCGGC
71325797 CATTC
1 CATTC
71325802 GGCCTTATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.24, C:0.35, G:0.11, T:0.30
Consensus pattern (16 bp):
CATTCATCACATCGGC
Found at i:71325791 original size:63 final size:64
Alignment explanation
Indices: 71325718--71325850 Score: 241
Period size: 65 Copynumber: 2.1 Consensus size: 64
71325708 TACACTTTCA
71325718 CATTCATCACATTGGCCATTCGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGC
1 CATTCATCACATTGGCCATTCGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGC
*
71325781 CATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGC
1 CATTCATCACATTGGCCATTCGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGC
71325846 CATTC
1 CATTC
71325851 GGCCTTATCA
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
63 32 0.48
65 35 0.52
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (64 bp):
CATTCATCACATTGGCCATTCGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGC
Found at i:71325802 original size:112 final size:112
Alignment explanation
Indices: 71325669--71325896 Score: 456
Period size: 112 Copynumber: 2.0 Consensus size: 112
71325659 TACACTTTCA
71325669 CATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGC
1 CATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGC
71325734 CATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
66 CATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
71325781 CATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGC
1 CATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGC
71325846 CATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
66 CATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
71325893 CATT
1 CATT
71325897 AGGCCTTATC
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 116 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (112 bp):
CATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGC
CATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
Found at i:71336078 original size:51 final size:50
Alignment explanation
Indices: 71335929--71336082 Score: 163
Period size: 51 Copynumber: 3.0 Consensus size: 50
71335919 TGATATAAAA
* * *
71335929 TTTAAATTTATTATTATATTTTTTAAAAATATTTATGTACTTTTACATAT
1 TTTAAATTTATTATTTTATTTTTTAAAAATATTTATGTATTTTTATATAT
* * *
71335979 TTTAAATTTAATATATTATTATTTTTATCAACAATA-TT-T-T-TTTATATATTT
1 TTTAAATTT-AT-TATT-TTATTTTT-T-AAAAATATTTATGTATTTTTATATAT
*
71336030 TTTAAATTTATTATTTTATTTATTTGAAAATATTTATGTATTTTTATATAT
1 TTTAAATTTATTATTTTATTT-TTTAAAAATATTTATGTATTTTTATATAT
71336081 TT
1 TT
71336083 CTTTGATTTT
Statistics
Matches: 84, Mismatches: 10, Indels: 19
0.74 0.09 0.17
Matches are distributed among these distances:
47 5 0.06
48 9 0.11
49 7 0.08
50 12 0.14
51 29 0.35
52 5 0.06
53 8 0.10
54 3 0.04
55 6 0.07
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (50 bp):
TTTAAATTTATTATTTTATTTTTTAAAAATATTTATGTATTTTTATATAT
Found at i:71337643 original size:28 final size:28
Alignment explanation
Indices: 71337589--71337648 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
71337579 AACTCTTCAA
*
71337589 AATTTTAAAAAATAAAAATAATTTAAAT
1 AATTTTAAAAAATAAAAATAATATAAAT
*
71337617 AATTTTAAAATATATGAAAAAT-ATAAAAAT
1 AATTTTAAAA-A-AT-AAAAATAATATAAAT
71337647 AA
1 AA
71337649 AAAAAATGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 10 0.37
29 1 0.04
30 10 0.37
31 6 0.22
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (28 bp):
AATTTTAAAAAATAAAAATAATATAAAT
Found at i:71338324 original size:14 final size:13
Alignment explanation
Indices: 71338302--71338332 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
71338292 GTAAATAATA
71338302 TTTTTTCTTGAAT
1 TTTTTTCTTGAAT
71338315 TTTTTATCTTGAAT
1 TTTTT-TCTTGAAT
71338329 TTTT
1 TTTT
71338333 GAAAAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.71
Consensus pattern (13 bp):
TTTTTTCTTGAAT
Found at i:71340208 original size:18 final size:20
Alignment explanation
Indices: 71340163--71340211 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
71340153 AAAGCCCCCT
*
71340163 AACCTTTTTTTTTCAACATGC
1 AACCTTTTTTTTT-AACATCC
*
71340184 AAACTTTTTTTTT-AC-TCC
1 AACCTTTTTTTTTAACATCC
71340202 AACCTTTTTT
1 AACCTTTTTT
71340212 AAAAGTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 11 0.44
19 2 0.08
21 12 0.48
ACGTcount: A:0.22, C:0.22, G:0.02, T:0.53
Consensus pattern (20 bp):
AACCTTTTTTTTTAACATCC
Found at i:71341201 original size:33 final size:32
Alignment explanation
Indices: 71341137--71341218 Score: 101
Period size: 33 Copynumber: 2.5 Consensus size: 32
71341127 ATAATAAAAA
* * *
71341137 TAAATTATTTTATATTTTATATATCATTATAT
1 TAAATTATTTAATATTTCATATATCAGTATAT
* *
71341169 TAAATTATTTGAATATTTCATGTATTAGTATAT
1 TAAATTATTT-AATATTTCATATATCAGTATAT
71341202 TAAATTATTTAAATATT
1 TAAATTATTT-AATATT
71341219 ATTTTTCATC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 10 0.23
33 33 0.77
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (32 bp):
TAAATTATTTAATATTTCATATATCAGTATAT
Found at i:71342713 original size:77 final size:77
Alignment explanation
Indices: 71342614--71343030 Score: 475
Period size: 78 Copynumber: 5.3 Consensus size: 77
71342604 GAAAATTAAA
* * * *
71342614 AGTAAAATAAAAATCGTTTCGGGATTGGTTCCTACCATTTAACGATTTTATTCCAAAATTGTTTT
1 AGTAAAATAAAAATCGTTTCGGGATTGATT-CTACCGTTCAACGATTTTATTCCAAATTTGTTTT
* *
71342679 ATTTCTAAAAACA
65 ATTTCCAAAAACG
* * * *
71342692 AGTAAAAT-AAAATTGTTTCGGGATCGATTCTCGCCGTTCAACGGTTTTATTCCAAATTTGTTTT
1 AGTAAAATAAAAATCGTTTCGGGATTGATTCT-ACCGTTCAACGATTTTATTCCAAATTTGTTTT
71342756 ATTTCCAAAAAACG
65 ATTTCC-AAAAACG
* * * * *
71342770 AGTAAAAT-AAAATAGTTTCGGGATTGACTCCTGCCGTTCAATGATTTTATTCCAAATTTGTTTA
1 AGTAAAATAAAAATCGTTTCGGGATTGA-TTCTACCGTTCAACGATTTTATTCCAAATTTGTTTT
*
71342834 ATTTTC-AAAACG
65 ATTTCCAAAAACG
* *
71342846 AGTAAAATAAAAAATTGTTTCGGGATTGATTCTCACCGTTCAACGATTTTATTTCAAATTTGTTT
1 AGTAAAAT-AAAAATCGTTTCGGGATTGATTCT-ACCGTTCAACGATTTTATTCCAAATTTGTTT
* *
71342911 TATTTCCAAACATG
64 TATTTCCAAAAACG
* * * *
71342925 AGAAAAATAAAAAAATCATTTCGGGATTGATT-TTCGCTGTTCAACGATTTTATTCAAAATTTGT
1 AGTAAAAT--AAAAATCGTTTCGGGATTGATTCTAC-C-GTTCAACGATTTTATTCCAAATTTGT
71342989 TTTATTTCCAAAAACG
62 TTTATTTCCAAAAACG
*
71343005 AGTAACAT-AAAATCCGTTTCGGGATT
1 AGTAAAATAAAAAT-CGTTTCGGGATT
71343031 TATTTGCTGT
Statistics
Matches: 291, Mismatches: 37, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
76 16 0.05
77 58 0.20
78 136 0.47
79 16 0.05
80 65 0.22
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (77 bp):
AGTAAAATAAAAATCGTTTCGGGATTGATTCTACCGTTCAACGATTTTATTCCAAATTTGTTTTA
TTTCCAAAAACG
Found at i:71343155 original size:236 final size:233
Alignment explanation
Indices: 71342707--71343156 Score: 509
Period size: 236 Copynumber: 1.9 Consensus size: 233
71342697 AATAAAATTG
* *
71342707 TTTCGGGATCGATTCTCGCCGTTCAACGGTTTTATTCCAAATTTGTTTTATTTCCAAAAAACGAG
1 TTTCGGGATCGATTCTCGCCGTTCAACGATTTTATTCAAAATTTGTTTTATTTCCAAAAAACGAG
*
71342772 TAAAATAAAATAGTTTCGGGATTGACTCCTGCCGTTCAATGATTTTATTCCAAATTTGTTTAATT
66 TAAAATAAAATAGTTTCGGGATTGACTCCTGCCGTTCAATGATTTTATT-C-AATTTGTTT-AGT
* * * *
71342837 TTCAAAACGAGTAAAATAAAAAATTGTTTCGGGATTGATTCTCACCGTTCAACGATTTTATTTCA
128 TGCAAAACGAGTAAAATAAAAAATTATTTCAGAATTGATTCTCACCGTTCAACGATTTTATTTCA
*
71342902 AATTTGTTTTATTTCCAAACATGAGAAAAATAAAAAAATCA
193 AATTTATTTTATTTCCAAACATGAGAAAAATAAAAAAATCA
* * *
71342943 TTTCGGGATTGATTTTCGCTGTTCAACGATTTTATTCAAAATTTGTTTTATTTCC-AAAAACGAG
1 TTTCGGGATCGATTCTCGCCGTTCAACGATTTTATTCAAAATTTGTTTTATTTCCAAAAAACGAG
* * * * * * *
71343007 TAACATAAAATCCGTTTCGGGATTTATTTGCTGTCGTTCAATGGA-TTTATT-ACTTT-TTT-GT
66 TAAAATAAAAT-AGTTTCGGGATTGA-CTCCTGCCGTTCAAT-GATTTTATTCAATTTGTTTAGT
* * * *
71343068 TGCAAAAAACGAG-AAATTAAATAAAATATATTTCAGAATTTATTCTCGCCGTTTAACAAGATTT
128 TGC--AAAACGAGTAAAAT-AA-AAAAT-TATTTCAGAATTGATTCTCACCGTTCAAC--GATTT
* * *
71343132 TATTT-GATTTTATTTTGTTTCCAAA
186 TATTTCAAATTTATTTTATTTCCAAA
71343157 TTCAAAATTA
Statistics
Matches: 179, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
231 3 0.02
232 4 0.02
233 13 0.07
234 9 0.05
235 42 0.23
236 78 0.44
237 28 0.16
238 2 0.01
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (233 bp):
TTTCGGGATCGATTCTCGCCGTTCAACGATTTTATTCAAAATTTGTTTTATTTCCAAAAAACGAG
TAAAATAAAATAGTTTCGGGATTGACTCCTGCCGTTCAATGATTTTATTCAATTTGTTTAGTTGC
AAAACGAGTAAAATAAAAAATTATTTCAGAATTGATTCTCACCGTTCAACGATTTTATTTCAAAT
TTATTTTATTTCCAAACATGAGAAAAATAAAAAAATCA
Found at i:71343219 original size:85 final size:84
Alignment explanation
Indices: 71343081--71343325 Score: 321
Period size: 85 Copynumber: 2.9 Consensus size: 84
71343071 AAAAAACGAG
*
71343081 AAATTAAATAAAATATATTTC-AGAATTTATTCTCGCCGTTTAACAAGATTTTATTTGATTTTAT
1 AAATTAAATAAAATATATTTCGAG-ATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTAT
*
71343145 TTTGTTTCCAAATTCAAAATT
65 TTTGTTTCCAAATTC-AAACT
* * *
71343166 AAATTAAATAAAATCTATTTCGAGATTTATTCCCGCCGTTTAATAATATTTTATTTGATTTTATT
1 AAATTAAATAAAATATATTTCGAGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTATT
* *
71343231 TTGTTTCAAAATTCGAACT
66 TTGTTTCCAAATTCAAACT
* * * ** ** * *
71343250 AAATTAAATAAAATTTGTTTCGGGATTTATTCCTACCGTTTAACAAGATTTTATTCAATATTGTT
1 AAATTAAATAAAATATATTTCGAGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTATT
71343315 TTGTTTCCAAA
66 TTGTTTCCAAA
71343326 CAAAGACATA
Statistics
Matches: 140, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
84 67 0.48
85 71 0.51
86 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.46
Consensus pattern (84 bp):
AAATTAAATAAAATATATTTCGAGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTATT
TTGTTTCCAAATTCAAACT
Found at i:71343301 original size:84 final size:85
Alignment explanation
Indices: 71343081--71343393 Score: 309
Period size: 84 Copynumber: 3.7 Consensus size: 85
71343071 AAAAAACGAG
* *
71343081 AAATTAAATAAAATATATTTCAGAATTTATT-CTCGCCGTTTAACAAGATTTTATTTGATTTTAT
1 AAATTAAATAAAATATATTTCGGGATTTATTCCT-GCCGTTTAACAAGATTTTATTTGATTTTAT
* *
71343145 TTTGTTTCCAAATTCAAAATT
65 TTTGTTTCAAAATTCAAAACT
* * * * *
71343166 AAATTAAATAAAATCTATTTCGAGATTTATTCCCGCCGTTTAATAATATTTTATTTGATTTTATT
1 AAATTAAATAAAATATATTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTATTTGATTTTATT
*
71343231 TTGTTTCAAAATTC-GAACT
66 TTGTTTCAAAATTCAAAACT
* * * ** * *
71343250 AAATTAAATAAAATTTGTTTCGGGATTTATTCCTACCGTTTAACAAGATTTTATTCAATATTGTT
1 AAATTAAATAAAATATATTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTATTTGATTTTATT
*
71343315 TTGTTTCCAAA--CAAAGAC-
66 TTGTTTCAAAATTCAAA-ACT
* * * * * *
71343333 ATAATCAAAT-AATTCTACTTT-GGGATTTATTCATGTCGTTTAA-TAGATTTTATTTTGATTT
1 A-AATTAAATAAAATATA-TTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTA-TTTGATTT
71343394 AATGATATAA
Statistics
Matches: 188, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
82 9 0.05
83 30 0.16
84 79 0.42
85 69 0.37
86 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.46
Consensus pattern (85 bp):
AAATTAAATAAAATATATTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTATTTGATTTTATT
TTGTTTCAAAATTCAAAACT
Found at i:71349129 original size:46 final size:46
Alignment explanation
Indices: 71349079--71349254 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
71349069 TGGTTGAGCA
*
71349079 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
71349125 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GA--CGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AA-T--G
* *
71349170 CATCCGAACTCGTAGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71349218 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71349255 GCGAGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 22
0.77 0.08 0.16
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 3 0.03
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 2 0.02
51 2 0.02
52 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71349235 original size:93 final size:93
Alignment explanation
Indices: 71349076--71349247 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
71349066 GGATGGTTGA
* * *
71349076 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATAGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71349141 TGAGTCCGAGTTCGTGAGACGTAACTAG
66 TGAGTCCGAGTTCGTGAGACGTAACTAG
* *
71349169 GCATCCGAACTCGTAGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATAGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71349234 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
71349248 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATAGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGACGTAACTAG
Found at i:71353853 original size:24 final size:20
Alignment explanation
Indices: 71353797--71353837 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
71353787 AATTGACTTG
* *
71353797 AGTCTACTTTCCATGAACAT
1 AGTCTGCTTTCCACGAACAT
71353817 AGTCTGCTTTCCACGAACAT
1 AGTCTGCTTTCCACGAACAT
71353837 A
1 A
71353838 ATGCTCTGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (20 bp):
AGTCTGCTTTCCACGAACAT
Found at i:71364346 original size:49 final size:47
Alignment explanation
Indices: 71364172--71364682 Score: 862
Period size: 47 Copynumber: 10.7 Consensus size: 47
71364162 CCCTTCGAGA
* * * * *
71364172 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71364219 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71364266 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71364313 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71364362 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71364409 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
71364458 CTTATCACATATATATACACTTTCACCTTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71364507 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71364554 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71364601 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
71364648 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
71364683 AGAATCCTAA
Statistics
Matches: 446, Mismatches: 11, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
46 1 0.00
47 311 0.70
49 128 0.29
51 6 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71364369 original size:96 final size:94
Alignment explanation
Indices: 71364172--71364682 Score: 862
Period size: 96 Copynumber: 5.4 Consensus size: 94
71364162 CCCTTCGAGA
* * * * *
71364172 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
71364237 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
71364266 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
71364331 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
71364362 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--AC
71364427 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
71364458 CTTATCACATATATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
71364523 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
71364554 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
71364619 TTTCACATTCATCACATCGACCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
71364648 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
71364683 AGAATCCTAA
Statistics
Matches: 399, Mismatches: 11, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
93 1 0.00
94 170 0.43
96 176 0.44
98 52 0.13
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:71368435 original size:13 final size:15
Alignment explanation
Indices: 71368405--71368436 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
71368395 AAAAGAAAAA
71368405 AAAAGAATTAGTAAT
1 AAAAGAATTAGTAAT
71368420 AAAA-AATTAG-AAT
1 AAAAGAATTAGTAAT
71368433 AAAA
1 AAAA
71368437 TTTAAATTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 6 0.35
15 4 0.24
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (15 bp):
AAAAGAATTAGTAAT
Found at i:71377979 original size:17 final size:17
Alignment explanation
Indices: 71377959--71377993 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
71377949 TATATGTGTC
71377959 ATTTGATTTGCCAAATG
1 ATTTGATTTGCCAAATG
71377976 ATTTGATTTGCCAAATG
1 ATTTGATTTGCCAAATG
71377993 A
1 A
71377994 AGGCATGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (17 bp):
ATTTGATTTGCCAAATG
Found at i:71388898 original size:20 final size:20
Alignment explanation
Indices: 71388875--71388917 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
71388865 CCTTAGTAAG
71388875 ATGTTTGATTAAGTAAAACC
1 ATGTTTGATTAAGTAAAACC
*
71388895 ATGTTTGATTAAGTAAAATC
1 ATGTTTGATTAAGTAAAACC
71388915 ATG
1 ATG
71388918 ACTAAGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (20 bp):
ATGTTTGATTAAGTAAAACC
Found at i:71393109 original size:39 final size:40
Alignment explanation
Indices: 71393064--71393288 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
71393054 GCTCCTCGTT
* * * *
71393064 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
71393104 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
71393143 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
71393183 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
71393223 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
71393264 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
71393289 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 105 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:71393297 original size:41 final size:41
Alignment explanation
Indices: 71393220--71393297 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
71393210 CTTGTATCTC
* * *
71393220 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
71393261 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
71393298 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:71401042 original size:39 final size:40
Alignment explanation
Indices: 71400997--71401220 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
71400987 GCTCCTCGTT
* * * *
71400997 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
71401037 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
71401076 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
71401116 CAAAGGCCTTCGGG-CTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
71401155 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
71401196 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
71401221 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 66 0.42
40 78 0.50
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:71401100 original size:79 final size:78
Alignment explanation
Indices: 71400997--71401221 Score: 247
Period size: 79 Copynumber: 2.8 Consensus size: 78
71400987 GCTCCTCGTT
* * *
71400997 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
*
71401062 TTTAATAACTCGCA
66 CTT-ATAACTCGCA
* * * *
71401076 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
* *
71401140 AACTTGTATCTCGCA
65 -ACTTATAACTCGCA
* * * * * *
71401155 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
71401219 GAC
64 GAC
71401222 AGCATTCAAT
Statistics
Matches: 121, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
78 3 0.02
79 91 0.75
80 27 0.22
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
CTTATAACTCGCA
Found at i:71401229 original size:41 final size:41
Alignment explanation
Indices: 71401152--71401229 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
71401142 CTTGTATCTC
* * *
71401152 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
71401193 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
71401230 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:71408901 original size:129 final size:128
Alignment explanation
Indices: 71408754--71409010 Score: 417
Period size: 129 Copynumber: 2.0 Consensus size: 128
71408744 AAGCCCATAA
* *
71408754 TAATACTCTACTAAGGACCTTTTAAGAATAATCATATTATTCTCAGGACATTATTATAAAATAAT
1 TAATACTCGACTAAGGACCTTTTAAGAATAATCATATTATTCTCAAGACATTATTATAAAATAAT
** *
71408819 TTATTTATATATTCAGAAAAGAAACTGAAATAATAATGATAATG-CTTTATATTAACAAACGAGG
66 TTATTTATATACCCAAAAAAGAAACTGAAAT-ATAATGATAATGTC-TTATATTAACAAACGAGG
* * *
71408883 TAATACTCGACTAAGGACCTTTTAAGAATAATTATATTATTCTCAAGATATTATTATAAAATAGT
1 TAATACTCGACTAAGGACCTTTTAAGAATAATCATATTATTCTCAAGACATTATTATAAAATAAT
71408948 TTATTTATATACCCAAAAAAGAAACTGAAATATAATGATAATGTCTTATATTAACAAACGAGG
66 TTATTTATATACCCAAAAAAGAAACTGAAATATAATGATAATGTCTTATATTAACAAACGAGG
71409011 CAAAACAAGT
Statistics
Matches: 119, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
128 30 0.25
129 89 0.75
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.35
Consensus pattern (128 bp):
TAATACTCGACTAAGGACCTTTTAAGAATAATCATATTATTCTCAAGACATTATTATAAAATAAT
TTATTTATATACCCAAAAAAGAAACTGAAATATAATGATAATGTCTTATATTAACAAACGAGG
Found at i:71409302 original size:32 final size:32
Alignment explanation
Indices: 71409260--71409321 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
71409250 AGGGTATGAT
*
71409260 AGTTTAAGATCAAATTAGGAGAAATTAAGGAC
1 AGTTTAAGATCAAATTAGGAGAAACTAAGGAC
* *
71409292 AGTTTGAGATCAAATTTGGAGAAACTAAGG
1 AGTTTAAGATCAAATTAGGAGAAACTAAGG
71409322 CTTTTGCTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (32 bp):
AGTTTAAGATCAAATTAGGAGAAACTAAGGAC
Found at i:71412943 original size:44 final size:44
Alignment explanation
Indices: 71412888--71412975 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
71412878 GATGAATAGC
*
71412888 TAATTCGGTTTGTGCTCTCATAATTCAAGTTCATTAAATAAATA
1 TAATTCAGTTTGTGCTCTCATAATTCAAGTTCATTAAATAAATA
*
71412932 TAATTCAGTTTGTGCTCTCATAATTCAAGTTCGTTAAATAAATA
1 TAATTCAGTTTGTGCTCTCATAATTCAAGTTCATTAAATAAATA
71412976 AACATATATG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (44 bp):
TAATTCAGTTTGTGCTCTCATAATTCAAGTTCATTAAATAAATA
Found at i:71418867 original size:95 final size:95
Alignment explanation
Indices: 71418711--71418889 Score: 340
Period size: 95 Copynumber: 1.9 Consensus size: 95
71418701 ATGAGTCTGA
*
71418711 AGTAATATTCCAAATATAAGTACCCGATAAGCAAGAGTGTATGCATTAGTGATCTTTCTCTTCTC
1 AGTAATATTCCAAATATAAGTACCCGATAAGCAAGAGAGTATGCATTAGTGATCTTTCTCTTCTC
71418776 TAATTCCTCTATTATCAAAGATTAGTCTAG
66 TAATTCCTCTATTATCAAAGATTAGTCTAG
*
71418806 AGTAATATTCCAAATATAAGTACCTGATAAGCAAGAGAGTATGCATTAGTGATCTTTCTCTTCTC
1 AGTAATATTCCAAATATAAGTACCCGATAAGCAAGAGAGTATGCATTAGTGATCTTTCTCTTCTC
71418871 TAATTCCTCTATTATCAAA
66 TAATTCCTCTATTATCAAA
71418890 TCCACACATT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 82 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.36
Consensus pattern (95 bp):
AGTAATATTCCAAATATAAGTACCCGATAAGCAAGAGAGTATGCATTAGTGATCTTTCTCTTCTC
TAATTCCTCTATTATCAAAGATTAGTCTAG
Found at i:71434575 original size:27 final size:28
Alignment explanation
Indices: 71434545--71434614 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
71434535 TAGTAACGCA
*
71434545 GCAAAGCTACTAATAACAGTAA-ACGTG
1 GCAAAGCCACTAATAACAGTAATACGTG
* *
71434572 GCAAAGCCACCAA-AGCAGTAATTACGTG
1 GCAAAGCCACTAATAACAGTAA-TACGTG
71434600 GCAAAGCCACTAATA
1 GCAAAGCCACTAATA
71434615 CAATACTTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.19
27 11 0.31
28 17 0.47
29 1 0.03
ACGTcount: A:0.43, C:0.23, G:0.19, T:0.16
Consensus pattern (28 bp):
GCAAAGCCACTAATAACAGTAATACGTG
Found at i:71434764 original size:21 final size:21
Alignment explanation
Indices: 71434738--71434782 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
71434728 CAATTAACCT
71434738 ATTACTAGGGGTATGATGGTC
1 ATTACTAGGGGTATGATGGTC
71434759 ATTACTAGGGGTATGATGGTC
1 ATTACTAGGGGTATGATGGTC
71434780 ATT
1 ATT
71434783 TCGTCGATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.09, G:0.31, T:0.36
Consensus pattern (21 bp):
ATTACTAGGGGTATGATGGTC
Found at i:71437757 original size:21 final size:22
Alignment explanation
Indices: 71437705--71437757 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
71437695 AAATAAAGTC
*
71437705 CATGTA-CAAATATCATCATCT
1 CATGTATCATATATCATCATCT
* *
71437726 CATGTTTTCATATATCAT-ATGT
1 CATG-TATCATATATCATCATCT
71437748 CATGTATCAT
1 CATGTATCAT
71437758 CACTTGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.42
Consensus pattern (22 bp):
CATGTATCATATATCATCATCT
Found at i:71438338 original size:17 final size:17
Alignment explanation
Indices: 71438292--71438340 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
71438282 ATTAACATTT
71438292 TTATCATTTATCGGGCA
1 TTATCATTTATCGGGCA
* *
71438309 TTATAATTGATCGGGCA
1 TTATCATTTATCGGGCA
71438326 CTT-TCATTTATCGGG
1 -TTATCATTTATCGGG
71438341 ATTTTACGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 25 0.93
18 2 0.07
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.41
Consensus pattern (17 bp):
TTATCATTTATCGGGCA
Found at i:71439162 original size:43 final size:43
Alignment explanation
Indices: 71439115--71439202 Score: 160
Period size: 43 Copynumber: 2.0 Consensus size: 43
71439105 CTCCTGTTTA
71439115 CTACAAATTCTGAGGCTTCATGACTTGGAAAA-TTTAAAACTTT
1 CTACAAATTCTGAGGCTTCATGACTT-GAAAATTTTAAAACTTT
71439158 CTACAAATTCTGAGGCTTCATGACTTGAAAATTTTAAAACTTT
1 CTACAAATTCTGAGGCTTCATGACTTGAAAATTTTAAAACTTT
71439201 CT
1 CT
71439203 TAAATCATCA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 5 0.11
43 39 0.89
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.36
Consensus pattern (43 bp):
CTACAAATTCTGAGGCTTCATGACTTGAAAATTTTAAAACTTT
Found at i:71439513 original size:28 final size:27
Alignment explanation
Indices: 71439477--71439533 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 27
71439467 TACAGCGGTT
*
71439477 TTCATACGG-CTGGCACACACTCGTGTCC
1 TTCACACGGCCTGGCACAC-C-CGTGTCC
71439505 TTCACACGGCCCTGGCACACCCGTGTCC
1 TTCACACGG-CCTGGCACACCCGTGTCC
71439533 T
1 T
71439534 AGCCCGTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 16 0.62
29 1 0.04
30 9 0.35
ACGTcount: A:0.16, C:0.40, G:0.21, T:0.23
Consensus pattern (27 bp):
TTCACACGGCCTGGCACACCCGTGTCC
Found at i:71448213 original size:55 final size:55
Alignment explanation
Indices: 71448083--71448216 Score: 142
Period size: 55 Copynumber: 2.4 Consensus size: 55
71448073 TCACAGCCAT
* ** * *
71448083 GCGAACCTGCCAAAACAACATGGGCGTGCGACACGCTGGTGCCTAGAAACCATGG
1 GCGAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGACAAGAAACCATGG
* * * * ** * * *
71448138 CCAAACTTGTCAAATTAACACGGGCGTGTGGCACGCCCGTGACAAGAAACCGTGG
1 GCGAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGACAAGAAACCATGG
71448193 GCGAACCTGCCAAAACAACACGGG
1 GCGAACCTGCCAAAACAACACGGG
71448217 TGTGGGCCTA
Statistics
Matches: 59, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.31, C:0.29, G:0.28, T:0.13
Consensus pattern (55 bp):
GCGAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGACAAGAAACCATGG
Found at i:71451300 original size:29 final size:29
Alignment explanation
Indices: 71451234--71451310 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
71451224 TATATAGTGG
*
71451234 GTTCACACACTTAGTGCCATGTACTTTAA
1 GTTCACACACTTAGTGCCATGCACTTTAA
**
71451263 ACTCACACACTTAGTGCCATGCA-TTTCAA
1 GTTCACACACTTAGTGCCATGCACTTT-AA
* *
71451292 GTTCGCACACCTAGTGCCA
1 GTTCACACACTTAGTGCCA
71451311 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (29 bp):
GTTCACACACTTAGTGCCATGCACTTTAA
Found at i:71453610 original size:94 final size:94
Alignment explanation
Indices: 71453449--71453622 Score: 246
Period size: 94 Copynumber: 1.9 Consensus size: 94
71453439 TGATTTGTGT
*
71453449 GCCAGTGTAAGACCATGTCTGGGACATGGAATCGGCATCCAGATGAGGGCTACTGTAAGACATGT
1 GCCAGTGTAAGACCATGTCTGGAACATGGAATCGGCATCCAGATGAGGGCTACTGTAAGACATGT
*
71453514 CTGAGATATGCATCAACCATATTATGAGA
66 CTGAGACATGCATCAACCATATTATGAGA
* * *
71453543 GCCAGTGTAAGACCATGTCTGGAACAT-GACATCGGTA-CAGAGATGAGTGCTA-TAGTAAGACA
1 GCCAGTGTAAGACCATGTCTGGAACATGGA-ATCGGCATC-CAGATGAGGGCTACT-GTAAGACA
*
71453605 TGTCTGGGACATGCATCA
63 TGTCTGAGACATGCATCA
71453623 GCCTCGACAG
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
93 4 0.06
94 67 0.94
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (94 bp):
GCCAGTGTAAGACCATGTCTGGAACATGGAATCGGCATCCAGATGAGGGCTACTGTAAGACATGT
CTGAGACATGCATCAACCATATTATGAGA
Found at i:71453650 original size:47 final size:45
Alignment explanation
Indices: 71453599--71453755 Score: 122
Period size: 44 Copynumber: 3.4 Consensus size: 45
71453589 GTGCTATAGT
71453599 AAGACATGTCTGGGACATGCATCAGCCTCGACAGAGAT-AGCCAGTGC
1 AAGACATGTCTGGGACATGCATCAGCC-C-A-AGAGATGAGCCAGTGC
* * * * * * *
71453646 AAGACGTGTTTGGGACACGCATCAG-CCAAGAGTTGTGCTAGTGT
1 AAGACATGTCTGGGACATGCATCAGCCCAAGAGATGAGCCAGTGC
* * * *
71453690 AAGACATGTCTAGGACATGCATCAGCACGCATATATGA-GAGCTAGTGT
1 AAGACATGTCTGGGACATGCATCAGC-C-CA-AGA-GATGAGCCAGTGC
71453738 AAGACTATGTCTGGGACA
1 AAGAC-ATGTCTGGGACA
71453756 CGGCATTGGT
Statistics
Matches: 88, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
43 5 0.06
44 28 0.32
45 1 0.01
46 2 0.02
47 24 0.27
48 16 0.18
49 12 0.14
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (45 bp):
AAGACATGTCTGGGACATGCATCAGCCCAAGAGATGAGCCAGTGC
Found at i:71453712 original size:44 final size:47
Alignment explanation
Indices: 71453546--71453755 Score: 150
Period size: 47 Copynumber: 4.5 Consensus size: 47
71453536 TATGAGAGCC
* *
71453546 AGTGTAAGACCATGTCTGGAACATGACATC-GGT--ACAGAGATGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCAGCTCGACAGAGAT--GTGCT
* *
71453594 A-TAGTAAGACATGTCTGGGACATGCATCAGCCTCGACAGAGAT-AGCC
1 AGT-GTAAGACATGTCTGGGACATGCATCAG-CTCGACAGAGATGTGCT
* * * * *
71453641 AGTGCAAGACGTGTTTGGGACACGCATCAGC-C-A-AGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTCGACAGAGATGTGCT
* * * * *
71453685 AGTGTAAGACATGTCTAGGACATGCATCAGCACG-CATATATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTCGACAGAGAT--GTGCT
71453733 AGTGTAAGACTATGTCTGGGACA
1 AGTGTAAGAC-ATGTCTGGGACA
71453756 CGGCATTGGT
Statistics
Matches: 128, Mismatches: 21, Indels: 25
0.74 0.12 0.14
Matches are distributed among these distances:
43 5 0.04
44 29 0.23
45 2 0.02
46 8 0.06
47 42 0.33
48 23 0.18
49 11 0.09
50 8 0.06
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTCGACAGAGATGTGCT
Found at i:71458803 original size:40 final size:40
Alignment explanation
Indices: 71458743--71458861 Score: 177
Period size: 40 Copynumber: 3.0 Consensus size: 40
71458733 GCTTTAACCG
* *
71458743 GATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGCCCA
1 GATATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCA
* *
71458783 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCT
1 GATATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCA
*
71458823 GA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 GATA-TAGTCACTCGCACAAATGCCTTCGGGACTTAGCCC
71458862 GGTTATCATC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
GATATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCA
Found at i:71464596 original size:93 final size:94
Alignment explanation
Indices: 71464445--71464757 Score: 306
Period size: 93 Copynumber: 3.4 Consensus size: 94
71464435 TGATTTGTGC
* * * * * *
71464445 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACA-AGGGCTAGTGTAAGACATG
1 GCCAGTGTAAGACCATGTCTAGGACACGACATCAGCAT--AGAGATAGTGCTAGTGTAAGACATG
71464509 TCAGGGACATGCATCAGCCAT-ATTATAAGA
64 TCAGGGACATGCATCAGCCATCATTATAAGA
* *
71464539 GCCAGTGTAAGACCAT-TCTAGGACATGACATCAGCATAGAGATGAGTGCTAGAGTAAGACATGT
1 GCCAGTGTAAGACCATGTCTAGGACACGACATCAGCATAGAGAT-AGTGCTAGTGTAAGACATGT
* * * *
71464603 CTA-GGACATGCATCGGCC-TCGA-CAGAGATA
65 C-AGGGACATGCATCAGCCATC-ATTATA-AGA
* * *
71464633 GCCAGTGTAAGA-CGTGTCTGGGACACG-CATCAGCCA-AGAG-TTGTGCTAGTGTAAGACATGT
1 GCCAGTGTAAGACCATGTCTAGGACACGACATCAG-CATAGAGATAGTGCTAGTGTAAGACATGT
* *
71464694 CTGGGACATGCATCAG-CATGCATATATGAGA
65 CAGGGACATGCATCAGCCAT-CAT-TATAAGA
*
71464725 GCCAGTGTAAGACTATGTCTAGGACACGACATC
1 GCCAGTGTAAGACCATGTCTAGGACACGACATC
71464758 GACAATTTAT
Statistics
Matches: 180, Mismatches: 24, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
90 1 0.01
91 37 0.21
92 17 0.09
93 78 0.43
94 47 0.26
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (94 bp):
GCCAGTGTAAGACCATGTCTAGGACACGACATCAGCATAGAGATAGTGCTAGTGTAAGACATGTC
AGGGACATGCATCAGCCATCATTATAAGA
Found at i:71464643 original size:47 final size:47
Alignment explanation
Indices: 71464445--71464750 Score: 174
Period size: 47 Copynumber: 6.5 Consensus size: 47
71464435 TGATTTGTGC
* * *
71464445 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACA-AG--G
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCAT-C-GACAGAGATA
* * * *
71464493 GCTAGTGTAAGACATGTC-AGGGACATGCATCAGCCAT--ATTATA-AGA
1 GCCAGTGTAAGACATGTCTA-GGACATGCATCAG-CATCGA-CAGAGATA
* *
71464539 GCCAGTGTAAGACCAT-TCTAGGACATGACATCAGCATAGAGATGAG-T-
1 GCCAGTGTAAGA-CATGTCTAGGACATG-CATCAGCATCGACA-GAGATA
* * * *
71464586 GCTAGAGTAAGACATGTCTAGGACATGCATCGGCCTCGACAGAGATA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAGCATCGACAGAGATA
* * * * *
71464633 GCCAGTGTAAGACGTGTCTGGGACACGCATCAGC--C-A-AGAGTTGT
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAGCATCGACAGAGAT-A
* * * * *
71464677 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCAT-GCATATATGAGA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAGCATCG-ACAGA-GATA
71464725 GCCAGTGTAAGACTATGTCTAGGACA
1 GCCAGTGTAAGAC-ATGTCTAGGACA
71464751 CGACATCGAC
Statistics
Matches: 202, Mismatches: 32, Indels: 47
0.72 0.11 0.17
Matches are distributed among these distances:
43 6 0.03
44 33 0.16
45 5 0.02
46 43 0.21
47 76 0.38
48 27 0.13
49 12 0.06
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTAGGACATGCATCAGCATCGACAGAGATA
Found at i:71464743 original size:140 final size:140
Alignment explanation
Indices: 71464445--71464750 Score: 322
Period size: 140 Copynumber: 2.2 Consensus size: 140
71464435 TGATTTGTGC
* * *
71464445 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACAAGGGCTAGTGTAAGACATGT
1 GCCAGTGTAAGA-CATGTCTAGGACATGGCATCGGCATCCAGACAAGAGCCAGTGTAAGACATGT
* *
71464510 CAGGGACATGCATCAGCCATATTATAAGAGCCAGTGTAAGACCATTCTAGGACATGACATCAGCA
65 CAGGGACACGCATCAGCCATATGATAAGAGCCAGTGTAAGACCATTCTAGGACATGACATCAGCA
*
71464575 TAGAGATGAGT
130 TAGAGATGAGA
* * * *
71464586 GCTAGAGTAAGACATGTCTAGGACAT-GCATCGGCCT-C-GACAGAGATAGCCAGTGTAAGACGT
1 GCCAGTGTAAGACATGTCTAGGACATGGCATCGGCATCCAGACA-AG--AGCCAGTGTAAGACAT
* * * * *
71464648 GTCTGGGACACGCATCAGCCA-A-GAGT-TGTGCTAGTGTAAGA-CATGTCTGGGACATG-CATC
63 GTCAGGGACACGCATCAGCCATATGA-TAAGAGCCAGTGTAAGACCAT-TCTAGGACATGACATC
* *
71464708 AGCATGCATATATGAGA
126 AGCAT--AGAGATGAGA
71464725 GCCAGTGTAAGACTATGTCTAGGACA
1 GCCAGTGTAAGAC-ATGTCTAGGACA
71464751 CGACATCGAC
Statistics
Matches: 138, Mismatches: 19, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
137 16 0.12
138 26 0.19
139 29 0.21
140 57 0.41
141 10 0.07
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (140 bp):
GCCAGTGTAAGACATGTCTAGGACATGGCATCGGCATCCAGACAAGAGCCAGTGTAAGACATGTC
AGGGACACGCATCAGCCATATGATAAGAGCCAGTGTAAGACCATTCTAGGACATGACATCAGCAT
AGAGATGAGA
Found at i:71470205 original size:40 final size:40
Alignment explanation
Indices: 71470111--71470335 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 40
71470101 TATTCGAATG
* *
71470111 ATATCCGGGCTAAG-TCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
71470152 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
71470192 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
71470232 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
71470272 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* **
71470312 ACATCCAAGCTAAGATCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
71470336 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 1 0.01
40 125 0.80
41 29 0.19
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:71470324 original size:80 final size:79
Alignment explanation
Indices: 71470111--71470371 Score: 276
Period size: 80 Copynumber: 3.3 Consensus size: 79
71470101 TATTCGAATG
* * *
71470111 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGG-CTAAGATCCGAAGGC
*
71470176 ATTCGTGCGAGTTGCT
64 ATTCGTGCGAGTCGCT
* * * * *
71470192 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGATCCGAAGGCA
* *
71470257 TTTGTGCTAG-CGACT
65 TTCGTGCGAGTCG-CT
* * * * *
71470272 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCAAGCTAAGATCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGATCCGAAGGCA
* * *
71470337 TT-GTGCAAGTAGTT
65 TTCGTGCGAGTCGCT
*
71470351 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
71470372 AATACTTGAG
Statistics
Matches: 151, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 90 0.60
81 33 0.22
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGCTAAGATCCGAAGGCAT
TCGTGCGAGTCGCT
Found at i:71470325 original size:120 final size:120
Alignment explanation
Indices: 71470111--71470371 Score: 289
Period size: 120 Copynumber: 2.2 Consensus size: 120
71470101 TATTCGAATG
* * * *
71470111 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * ** * *
71470176 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCAAGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
71470232 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * * *
71470295 CATTTATGCTAG-TGACCACATCCAAGCTAAGATCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCAAGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
71470351 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
71470372 AATACTTGAG
Statistics
Matches: 118, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
118 15 0.13
119 19 0.16
120 54 0.46
121 30 0.25
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCAAGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:71471964 original size:225 final size:222
Alignment explanation
Indices: 71471562--71472010 Score: 830
Period size: 225 Copynumber: 2.0 Consensus size: 222
71471552 AAAATTTACA
71471562 GAACTGGTTTTCGAGTTTTGGAACTCGAGATATGATTTTTAAGGTGACAGTGATGCAGTTAGCCA
1 GAACTGGTTTTCGAGTTTTGGAACTCGAGATATGATTTTTAAGGTGACAGTGATGCAGTTAGCCA
71471627 GCTCGTCTGGAAATTTAAAATGGACTATGCAAATAAGTGATTTAAGTCTGCGAACCCCTCGTGTC
66 GCTCGTCTGGAAATTTAAAATGGACTATGCAAATAAGTGATTTAAGTCTGCGAACCCCTCGTGTC
71471692 TGACTCCGGCAACGGTCTCGGGTATGGGGTGTTACATTCACCCTCAATATTAACCCATAACTCAT
131 TGACTCCGGCAACGGTCTCGGGTATGGGGTGTTACATTCACCCTCAATATTAACCCATAACTCAT
71471757 TATTGTTGAAATCCCCTAAATTAATTT
196 TATTGTTGAAATCCCCTAAATTAATTT
*
71471784 GAACTGGTTGTATACGAGTTTTGGAATTTTCGAGATATGATTTTTAAGGTGACAGTGATGCAGTT
1 GAACTGGTT-T-T-CGAGTTTTGGAA--CTCGAGATATGATTTTTAAGGTGACAGTGATGCAGTT
71471849 AG-CAGCTCGTCTGGAAATTTAAAATGGACTATGCAAATAAGTGATTTAAGTCT-CGAACCCCTC
61 AGCCAGCTCGTCTGGAAATTTAAAATGGACTATGCAAATAAGTGATTTAAGTCTGCGAACCCCTC
71471912 GTGTCTGACTCCGGCAACGGTCTCGGGTATGGGGTGTTACATTCACCCTCAATATTAACCCATAA
126 GTGTCTGACTCCGGCAACGGTCTCGGGTATGGGGTGTTACATTCACCCTCAATATTAACCCATAA
71471977 CTCATTATTGTTGAAATCCCCTAAATTAATTT
191 CTCATTATTGTTGAAATCCCCTAAATTAATTT
71472009 GA
1 GA
71472011 TCCCTATTTT
Statistics
Matches: 221, Mismatches: 1, Indels: 7
0.97 0.00 0.03
Matches are distributed among these distances:
222 9 0.04
223 1 0.00
224 1 0.00
225 121 0.55
226 51 0.23
227 38 0.17
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (222 bp):
GAACTGGTTTTCGAGTTTTGGAACTCGAGATATGATTTTTAAGGTGACAGTGATGCAGTTAGCCA
GCTCGTCTGGAAATTTAAAATGGACTATGCAAATAAGTGATTTAAGTCTGCGAACCCCTCGTGTC
TGACTCCGGCAACGGTCTCGGGTATGGGGTGTTACATTCACCCTCAATATTAACCCATAACTCAT
TATTGTTGAAATCCCCTAAATTAATTT
Found at i:71476451 original size:47 final size:46
Alignment explanation
Indices: 71476382--71476653 Score: 182
Period size: 47 Copynumber: 5.8 Consensus size: 46
71476372 TAGGGAAGGT
*
71476382 GTCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCAT-ATCTCAA
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATCATCTCAA
* *
71476429 GTCGATGCCATGTCCCAAACATGGTCTTACACT-GACT-ATCATCTCGTA
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCATCATCTC-AA
* * * * *
71476477 GCCAATGCATGTCCCATG-CATGTCTTACACTAGCTTAT-GTCTCGA
1 GTCGATGCATGTCCCA-GACATGTCTTACACTAGCTCATCATCTCAA
* * * * * * *
71476522 GGCTGACGCATCTCTCAGACATGTCTTACACTAGC-CCTCGTCTTAA
1 GTC-GATGCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCAA
* * ***
71476568 -TGCTGTTGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCATAATGTG
1 GT-C-GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATCAT-CTCAA
*
71476617 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCA
1 GTCGATGCATGTCCCAGACATGTCTTACACTAGCTCA
71476654 AACGAATGAC
Statistics
Matches: 180, Mismatches: 29, Indels: 32
0.75 0.12 0.13
Matches are distributed among these distances:
45 5 0.03
46 68 0.38
47 79 0.44
48 25 0.14
49 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCAA
Found at i:71484328 original size:46 final size:45
Alignment explanation
Indices: 71484275--71484450 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
71484265 TATTTGGGCA
71484275 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
71484321 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
71484368 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
71484414 CCCGAGCTTGTTGAGTTGAGTTCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71484451 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:71484430 original size:93 final size:93
Alignment explanation
Indices: 71484271--71484442 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
71484261 AGGATATTTG
* * *
71484271 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71484336 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
71484364 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
71484429 TTGAGTTCGAGTTC
66 TTGAGTCCGAGTTC
71484443 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:71488713 original size:40 final size:40
Alignment explanation
Indices: 71488645--71488848 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
71488635 CCTTTGGGGT
*
71488645 TTAG-CCGGATATAGCT-ACT-GCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
*
71488683 TTAGCCC-GATTATAGTAACTCGCATAAATGCCTTCGGGAC
1 TTAGCCCGGA-TATAGTAACTCGCACAAATGCCTTCGGGAC
*
71488723 TTAGCCCGGATATAGTAACTCGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
71488763 TTAGCCCGGATATAATAACTCGCACAATTGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * * *
71488802 TTAGCCC-GAAATTAGTCACTTGCACAGATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
71488842 TTAGCCC
1 TTAGCCC
71488849 AGTTATCATC
Statistics
Matches: 148, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
38 10 0.07
39 39 0.26
40 97 0.66
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:71490724 original size:43 final size:43
Alignment explanation
Indices: 71490667--71490752 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
71490657 TGCCTCTGAG
71490667 AATAACAGGACTTATAGAGTACCCAGAAGAGATTACTGTAATA
1 AATAACAGGACTTATAGAGTACCCAGAAGAGATTACTGTAATA
71490710 AATAACAGGACTTATAGAGTACCCAGAAGAGATTACTGTAATA
1 AATAACAGGACTTATAGAGTACCCAGAAGAGATTACTGTAATA
71490753 TACTCAATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.23
Consensus pattern (43 bp):
AATAACAGGACTTATAGAGTACCCAGAAGAGATTACTGTAATA
Found at i:71492772 original size:17 final size:17
Alignment explanation
Indices: 71492726--71492772 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
71492716 ATTTACATTT
*
71492726 TTATCATTTATCGGGCA
1 TTATCATTTATCGAGCA
* *
71492743 TTATAATTGATCGAGCA
1 TTATCATTTATCGAGCA
71492760 CTT-TCATTTATCG
1 -TTATCATTTATCG
71492773 GGCTTTTACA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
17 22 0.92
18 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.43
Consensus pattern (17 bp):
TTATCATTTATCGAGCA
Found at i:71494765 original size:26 final size:26
Alignment explanation
Indices: 71494682--71494815 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
71494672 CTGGAGGCCT
71494682 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* *
71494706 AGCCCTTTT-GATAAACTGAGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
71494730 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
71494756 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
71494782 AGCCCTTTTCAATAAACTGGGGCAT-
1 AGCCCTTTTCAATAAACTGGGGCATA
*
71494807 AGCCTTTTT
1 AGCCCTTTT
71494816 GCACTTCCTC
Statistics
Matches: 102, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
23 7 0.07
24 23 0.23
25 20 0.20
26 52 0.51
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:71494891 original size:20 final size:20
Alignment explanation
Indices: 71494866--71494921 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
71494856 TATGATTACG
*
71494866 TCATGTGCATTTCATA-CATA
1 TCATGTGCATATCATATCA-A
71494886 TCATGTGCATATCATATCAA
1 TCATGTGCATATCATATCAA
71494906 TCATGT--ATATCATATC
1 TCATGTGCATATCATATC
71494922 CCACATATCA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 22 0.65
21 2 0.06
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (20 bp):
TCATGTGCATATCATATCAA
Found at i:71506607 original size:47 final size:47
Alignment explanation
Indices: 71506544--71506857 Score: 461
Period size: 47 Copynumber: 6.6 Consensus size: 47
71506534 CCCTTCGGGA
* * *
71506544 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
71506591 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
71506638 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
71506685 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
71506732 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
71506779 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
71506826 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
71506858 TCAAATATAC
Statistics
Matches: 246, Mismatches: 17, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 222 0.90
48 1 0.00
49 22 0.09
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:71512637 original size:51 final size:48
Alignment explanation
Indices: 71512554--71512662 Score: 164
Period size: 51 Copynumber: 2.2 Consensus size: 48
71512544 CTGGAGGCCT
*
71512554 AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAATTGGGGCAA
1 AGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCAA
*
71512603 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCAT
1 AGCCCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCAA
71512654 AGCCCTTTT
1 AGCCCTTTT
71512663 GCACTTCCTC
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
48 5 0.09
49 7 0.13
50 10 0.18
51 33 0.60
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCAA
Found at i:71512638 original size:26 final size:25
Alignment explanation
Indices: 71512554--71512662 Score: 168
Period size: 25 Copynumber: 4.4 Consensus size: 25
71512544 CTGGAGGCCT
71512554 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
*
71512578 AGCCCTTTTCAATAAATTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
71512603 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
*
71512629 AGCCCTTTTCAATAAACTGGGGCAT
1 AGCCCTTTTCAATAAACTGGGGCAA
71512654 AGCCCTTTT
1 AGCCCTTTT
71512663 GCACTTCCTC
Statistics
Matches: 79, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
23 5 0.06
24 7 0.09
25 42 0.53
26 25 0.32
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Done.