Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 218 of 352
Found at i:71868713 original size:40 final size:40
Alignment explanation
Indices: 71868511--71868713 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
71868501 CGGAATTTAA
** *
71868511 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71868551 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
71868591 CCGGATTTAGTAACTCGCACAAATGCCTTC-GG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71868629 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
71868669 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
71868709 CCGGA
1 CCGGA
71868714 CATCATTCAA
Statistics
Matches: 140, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 34 0.24
39 3 0.02
40 91 0.65
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:71873098 original size:24 final size:24
Alignment explanation
Indices: 71873066--71873114 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
71873056 TCGGCGTAGT
71873066 CCCAGGTACAAGCTCAATACCAAA
1 CCCAGGTACAAGCTCAATACCAAA
71873090 CCCAGGTACAAGCTCAATACCAAA
1 CCCAGGTACAAGCTCAATACCAAA
71873114 C
1 C
71873115 TCTATCTCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.35, G:0.12, T:0.12
Consensus pattern (24 bp):
CCCAGGTACAAGCTCAATACCAAA
Found at i:71879281 original size:78 final size:81
Alignment explanation
Indices: 71879172--71879354 Score: 225
Period size: 78 Copynumber: 2.3 Consensus size: 81
71879162 GCTACTCGTT
* *
71879172 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
71879235 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
71879251 CAAATGCCTTCGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
71879314 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
71879330 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
71879355 CATCATTCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
77 3 0.03
78 52 0.58
79 24 0.27
80 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:71879287 original size:38 final size:39
Alignment explanation
Indices: 71879172--71879354 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 39
71879162 GCTACTCGTT
*
71879172 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCA
*
71879211 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
* *
71879251 CAAATGCCTTCGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
71879289 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
71879330 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
71879355 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
38 35 0.28
39 13 0.10
40 64 0.51
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:71887020 original size:78 final size:82
Alignment explanation
Indices: 71886898--71887081 Score: 229
Period size: 78 Copynumber: 2.3 Consensus size: 82
71886888 GCTACTCGTT
* *
71886898 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
71886961 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
71886978 CAAATGCCTTC-GG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
71887040 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
71887057 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71887082 CATCATTCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
77 3 0.03
78 52 0.58
79 13 0.14
80 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:71887081 original size:40 final size:40
Alignment explanation
Indices: 71886879--71887081 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
71886869 CGGAATTTAA
** *
71886879 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71886919 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
71886959 CCGGATTTAGTAACTCGCACAAATGCCTTC-GG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71886997 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
71887037 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
71887077 CCGGA
1 CCGGA
71887082 CATCATTCAA
Statistics
Matches: 140, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 34 0.24
39 3 0.02
40 91 0.65
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:71889485 original size:19 final size:19
Alignment explanation
Indices: 71889449--71889485 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
71889439 TAATTAGGCT
* *
71889449 TTAATTAAGTGAATTTAGA
1 TTAATTAAGAGAAATTAGA
71889468 TTAATTAAGAGAAATTAG
1 TTAATTAAGAGAAATTAG
71889486 GAAAAAAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38
Consensus pattern (19 bp):
TTAATTAAGAGAAATTAGA
Found at i:71890085 original size:12 final size:12
Alignment explanation
Indices: 71890068--71890095 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
71890058 TAAAAGATAT
71890068 TTATTATAATTA
1 TTATTATAATTA
71890080 TTATTATAATTA
1 TTATTATAATTA
71890092 TTAT
1 TTAT
71890096 CGTTATTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TTATTATAATTA
Found at i:71890153 original size:14 final size:15
Alignment explanation
Indices: 71890136--71890164 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
71890126 GAAATGAAAT
71890136 AAAGAAAGAA-AGCA
1 AAAGAAAGAATAGCA
71890150 AAAGAAAGAATAGCA
1 AAAGAAAGAATAGCA
71890165 GAAGCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.69, C:0.07, G:0.21, T:0.03
Consensus pattern (15 bp):
AAAGAAAGAATAGCA
Found at i:71891130 original size:86 final size:80
Alignment explanation
Indices: 71890944--71891130 Score: 175
Period size: 78 Copynumber: 2.3 Consensus size: 80
71890934 AAAAGTGATT
* *
71890944 TGAATTAAGTAAT-TGAATAATTATGTGAATATTTGAAAGTATATTGATTGGAAACTAAAAGTGA
1 TGAATTAA--AATATGAATAAATATGTGAATATTTGAAAGTATATTGATTGAAAACTAAAAGTGA
*
71891008 TTTGAATTGAATCAAAT
64 TTTGAATTGAATCAAAA
* * * * *
71891025 TGAATT--GA-ATGAAGAAAATATGTGAGTATTTGAAATGTATATTGATTGAAAAGTAATTAGTG
1 TGAATTAAAATATGAA-TAAATATGTGAATATTTGAAA-GTATATTGATTGAAAACTAA-AAGTG
* *
71891087 ATTTGAATTTGATTGGAAAA
63 ATTTGAA-TTGAAT-CAAAA
71891107 TGAATTAAAAATATGAATTAAATA
1 TGAATT-AAAATATGAA-TAAATA
71891131 AAAGTTAATT
Statistics
Matches: 83, Mismatches: 13, Indels: 15
0.75 0.12 0.14
Matches are distributed among these distances:
77 5 0.06
78 18 0.22
79 18 0.22
80 11 0.13
81 11 0.13
82 9 0.11
85 1 0.01
86 10 0.12
ACGTcount: A:0.44, C:0.01, G:0.18, T:0.36
Consensus pattern (80 bp):
TGAATTAAAATATGAATAAATATGTGAATATTTGAAAGTATATTGATTGAAAACTAAAAGTGATT
TGAATTGAATCAAAA
Found at i:71891534 original size:23 final size:23
Alignment explanation
Indices: 71891508--71891573 Score: 86
Period size: 21 Copynumber: 3.0 Consensus size: 23
71891498 AGACACTTTA
71891508 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
*
71891531 TGTGTCGTA--TCAGGCACCTTG
1 TGTGTCGTATTTCAGGCACCTCG
*
71891552 TGTGTCGT-TTT-AGGCACTTCG
1 TGTGTCGTATTTCAGGCACCTCG
71891573 T
1 T
71891574 ATACTGATCA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
21 28 0.74
22 1 0.03
23 9 0.24
ACGTcount: A:0.12, C:0.23, G:0.27, T:0.38
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCG
Found at i:71896732 original size:14 final size:13
Alignment explanation
Indices: 71896700--71896732 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
71896690 CCACCTCACT
71896700 TCCTCATTTTTCA
1 TCCTCATTTTTCA
71896713 TCCTCATTTTTCA
1 TCCTCATTTTTCA
71896726 TCTCTCA
1 TC-CTCA
71896733 CTTTATACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.15, C:0.33, G:0.00, T:0.52
Consensus pattern (13 bp):
TCCTCATTTTTCA
Found at i:71906545 original size:16 final size:15
Alignment explanation
Indices: 71906504--71906547 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
71906494 CTTTTCACTC
71906504 TCTTTTGTTTTCTTTT
1 TCTTTTGTTTT-TTTT
* *
71906520 TCTTAT-TTTTTTCT
1 TCTTTTGTTTTTTTT
71906534 TCTTTTGTTTTTTT
1 TCTTTTGTTTTTTT
71906548 ACAATCTTCC
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 8 0.35
15 10 0.43
16 5 0.22
ACGTcount: A:0.02, C:0.11, G:0.05, T:0.82
Consensus pattern (15 bp):
TCTTTTGTTTTTTTT
Found at i:71908659 original size:12 final size:12
Alignment explanation
Indices: 71908642--71908673 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
71908632 CACTTCAAAT
*
71908642 TTTTTTTTCGGA
1 TTTTTTTTCGAA
71908654 TTTTTTTTCGAA
1 TTTTTTTTCGAA
71908666 TTTTTTTT
1 TTTTTTTT
71908674 AAACTTGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.06, G:0.09, T:0.75
Consensus pattern (12 bp):
TTTTTTTTCGAA
Found at i:71909076 original size:14 final size:14
Alignment explanation
Indices: 71909046--71909089 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
71909036 GAAGAAGAAA
71909046 GAAA-GGTACGAAC
1 GAAATGGTACGAAC
* *
71909059 GAAATGGTAGGAAT
1 GAAATGGTACGAAC
*
71909073 GAAATGGTATGAAC
1 GAAATGGTACGAAC
71909087 GAA
1 GAA
71909090 GGGATTTGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 4 0.15
14 22 0.85
ACGTcount: A:0.45, C:0.07, G:0.32, T:0.16
Consensus pattern (14 bp):
GAAATGGTACGAAC
Found at i:71913822 original size:24 final size:24
Alignment explanation
Indices: 71913795--71913941 Score: 87
Period size: 24 Copynumber: 6.4 Consensus size: 24
71913785 TGGCGAGGGT
*
71913795 GGTGGTGGTGTCAGAGTAGGAGAG
1 GGTGGTGGTGTCATAGTAGGAGAG
* * *
71913819 GGTGGTGGTTTTATAGCAGGAGAG
1 GGTGGTGGTGTCATAGTAGGAGAG
*
71913843 GGAGGTGGT-T--TAGTA-GA-AG
1 GGTGGTGGTGTCATAGTAGGAGAG
* *
71913862 GTGATGGTGGTGCCACAGTAGGAGAG
1 G-G-TGGTGGTGTCATAGTAGGAGAG
* *
71913888 GGAGGTGGT-T--TATTAGGAG-G
1 GGTGGTGGTGTCATAGTAGGAGAG
* * *
71913908 TGATGGTGGTGCCACAGTAGGAGAG
1 -GGTGGTGGTGTCATAGTAGGAGAG
*
71913933 GGAGGTGGT
1 GGTGGTGGT
71913942 TGCGTTGCGG
Statistics
Matches: 91, Mismatches: 20, Indels: 24
0.67 0.15 0.18
Matches are distributed among these distances:
19 3 0.03
20 4 0.04
21 24 0.26
23 1 0.01
24 52 0.57
25 4 0.04
26 3 0.03
ACGTcount: A:0.22, C:0.05, G:0.49, T:0.24
Consensus pattern (24 bp):
GGTGGTGGTGTCATAGTAGGAGAG
Found at i:71913871 original size:45 final size:45
Alignment explanation
Indices: 71913836--71913942 Score: 196
Period size: 45 Copynumber: 2.4 Consensus size: 45
71913826 GTTTTATAGC
71913836 AGGAGAGGGAGGTGGTTTAGTAGAAGGTGATGGTGGTGCCACAGT
1 AGGAGAGGGAGGTGGTTTAGTAGAAGGTGATGGTGGTGCCACAGT
* *
71913881 AGGAGAGGGAGGTGGTTTATTAGGAGGTGATGGTGGTGCCACAGT
1 AGGAGAGGGAGGTGGTTTAGTAGAAGGTGATGGTGGTGCCACAGT
71913926 AGGAGAGGGAGGTGGTT
1 AGGAGAGGGAGGTGGTT
71913943 GCGTTGCGGG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 60 1.00
ACGTcount: A:0.23, C:0.06, G:0.49, T:0.22
Consensus pattern (45 bp):
AGGAGAGGGAGGTGGTTTAGTAGAAGGTGATGGTGGTGCCACAGT
Found at i:71913927 original size:69 final size:69
Alignment explanation
Indices: 71913792--71913927 Score: 148
Period size: 69 Copynumber: 2.0 Consensus size: 69
71913782 AATTGGCGAG
* * * * ****
71913792 GGTGGTGGTGGTGTCAGAGTAGGAGAGGGTGGTGGTTTTATAGCAGGAGAGGGAGGTGGTTTAGT
1 GGTGATGGTGGTGCCACAGTAGGAGAGGGAGGTGGTTTTATAGCAGGAGAGGGAGGTGCCACAGT
71913857 AGAA
66 AGAA
* * * *
71913861 GGTGATGGTGGTGCCACAGTAGGAGAGGGAGGTGG-TTTATTAGGAGGTGATGGTGGTGCCACAG
1 GGTGATGGTGGTGCCACAGTAGGAGAGGGAGGTGGTTTTA-TAGCAGGAGAGGGAGGTGCCACAG
71913925 TAG
65 TAG
71913928 GAGAGGGAGG
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
68 4 0.07
69 50 0.93
ACGTcount: A:0.21, C:0.06, G:0.48, T:0.25
Consensus pattern (69 bp):
GGTGATGGTGGTGCCACAGTAGGAGAGGGAGGTGGTTTTATAGCAGGAGAGGGAGGTGCCACAGT
AGAA
Found at i:71915004 original size:19 final size:17
Alignment explanation
Indices: 71914989--71915028 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
71914979 ATTATTTCAC
71914989 AAAAATATTTTTATTTA
1 AAAAATATTTTTATTTA
* *
71915006 AAAAAAAATTTTAGTTTA
1 AAAAATATTTTTA-TTTA
71915024 AAAAA
1 AAAAA
71915029 AATACTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (17 bp):
AAAAATATTTTTATTTA
Found at i:71915017 original size:17 final size:18
Alignment explanation
Indices: 71914997--71915030 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
71914987 ACAAAAATAT
71914997 TTTTA-TTTAAAAAAAAA
1 TTTTAGTTTAAAAAAAAA
71915014 TTTTAGTTTAAAAAAAA
1 TTTTAGTTTAAAAAAAA
71915031 TACTTTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (18 bp):
TTTTAGTTTAAAAAAAAA
Found at i:71915481 original size:23 final size:25
Alignment explanation
Indices: 71915453--71915509 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
71915443 AAAATAATTT
71915453 TTAAATAAGT-TATAA-AGTATGCA
1 TTAAATAAGTATATAAGAGTATGCA
*
71915476 TTAAATAAATTATATAAGAGTATGCA
1 TTAAAT-AAGTATATAAGAGTATGCA
71915502 TTAAATAA
1 TTAAATAA
71915510 ACATATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 6 0.20
24 3 0.10
25 7 0.23
26 14 0.47
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.35
Consensus pattern (25 bp):
TTAAATAAGTATATAAGAGTATGCA
Found at i:71915515 original size:25 final size:25
Alignment explanation
Indices: 71915463--71915516 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 25
71915453 TTAAATAAGT
*
71915463 TATAAAGTATGCATTAAATAAATTA
1 TATAAAGTATGCATTAAATAAATCA
71915488 TATAAGAGTATGCATTAAATAAA-CA
1 TATAA-AGTATGCATTAAATAAATCA
71915513 TATA
1 TATA
71915517 TATTTAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 10 0.37
26 17 0.63
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (25 bp):
TATAAAGTATGCATTAAATAAATCA
Found at i:71916828 original size:26 final size:27
Alignment explanation
Indices: 71916799--71916875 Score: 77
Period size: 26 Copynumber: 2.9 Consensus size: 27
71916789 AATGTCCTGG
*
71916799 CGGACTCCCCGTGTTTATTACCTC-GA
1 CGGACTCCCCGTGTTTACTACCTCGGA
* * *
71916825 CGGACTACCCATGTTTACTATCTCGGA
1 CGGACTCCCCGTGTTTACTACCTCGGA
* * *
71916852 -AGACTCCCCGTGTTTTCTATCTCG
1 CGGACTCCCCGTGTTTACTACCTCG
71916876 ACAGGCTACC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 40 0.95
27 2 0.05
ACGTcount: A:0.17, C:0.32, G:0.18, T:0.32
Consensus pattern (27 bp):
CGGACTCCCCGTGTTTACTACCTCGGA
Found at i:71923718 original size:20 final size:20
Alignment explanation
Indices: 71923694--71923749 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
71923684 AGGCTTTGAA
*
71923694 GTGCAAACAGAGGCATGATT
1 GTGCAATCAGAGGCATGATT
*
71923714 TTGCAATCAGAGGCATGATT
1 GTGCAATCAGAGGCATGATT
71923734 GTGCAATCAGAGGCAT
1 GTGCAATCAGAGGCAT
71923750 CGTAGTACAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (20 bp):
GTGCAATCAGAGGCATGATT
Found at i:71930787 original size:48 final size:48
Alignment explanation
Indices: 71930735--71930831 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
71930725 TTGTTTGGCT
*
71930735 ATCATCTATTCTTGTTGGTGCCATTAACTTAGTGCCTTTGGTAAGTGA
1 ATCATCTATTCTTGTTGGTGCCATTAACTCAGTGCCTTTGGTAAGTGA
71930783 ATCATCTATTCTTGTTGGTGCCATTAACTCAGTGCCTTTGGTAAGTGA
1 ATCATCTATTCTTGTTGGTGCCATTAACTCAGTGCCTTTGGTAAGTGA
71930831 A
1 A
71930832 ACTCTTCATG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.40
Consensus pattern (48 bp):
ATCATCTATTCTTGTTGGTGCCATTAACTCAGTGCCTTTGGTAAGTGA
Found at i:71936598 original size:37 final size:37
Alignment explanation
Indices: 71936557--71936630 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
71936547 ACCAAATTAC
71936557 AACTGATCAAACTCCCCTAAACTTAAGTCATTTCTTT
1 AACTGATCAAACTCCCCTAAACTTAAGTCATTTCTTT
71936594 AACTGATCAAACTCCCCTAAACTTAAGTCATTTCTTT
1 AACTGATCAAACTCCCCTAAACTTAAGTCATTTCTTT
71936631 TCCTCAAGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.35
Consensus pattern (37 bp):
AACTGATCAAACTCCCCTAAACTTAAGTCATTTCTTT
Found at i:71945561 original size:40 final size:40
Alignment explanation
Indices: 71945330--71945554 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
71945320 TTGAATGATG
* * * *
71945330 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
71945370 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71945409 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71945449 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71945489 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
71945530 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71945555 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 38 0.22
40 122 0.72
41 9 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71945576 original size:119 final size:119
Alignment explanation
Indices: 71945330--71945587 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
71945320 TTGAATGATG
* *
71945330 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
71945395 GTACGAGTTACTAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTACGAGTTACTAAACCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
* * * **
71945449 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
71945512 TTGTGCGAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTACGAGTTACTA-AACCGGACTAAGAT-CCGAAGGCATTTGAACGAGTTA-CTAAA
* *
71945569 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
71945588 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 1 0.01
119 77 0.65
120 40 0.34
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGTTACTAAACCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:71947929 original size:25 final size:24
Alignment explanation
Indices: 71947882--71947937 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
71947872 AGTTAGTAAT
*
71947882 AAAGAAATGGAGAAAAAAAAAAGA
1 AAAGAAAAGGAGAAAAAAAAAAGA
*
71947906 GAAAGAAAAGGATG-AAAACAAAAGA
1 -AAAGAAAAGGA-GAAAAAAAAAAGA
71947931 AAA-AAAA
1 AAAGAAAA
71947938 TGTGTCCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 4 0.14
24 3 0.11
25 20 0.71
26 1 0.04
ACGTcount: A:0.75, C:0.02, G:0.20, T:0.04
Consensus pattern (24 bp):
AAAGAAAAGGAGAAAAAAAAAAGA
Found at i:71949276 original size:39 final size:41
Alignment explanation
Indices: 71949181--71949364 Score: 229
Period size: 40 Copynumber: 4.6 Consensus size: 41
71949171 TCGAATGATG
* * *
71949181 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
71949220 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
71949260 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTATTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
71949299 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
71949339 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71949365 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
39 53 0.42
40 70 0.56
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:71949316 original size:79 final size:80
Alignment explanation
Indices: 71949181--71949362 Score: 228
Period size: 79 Copynumber: 2.3 Consensus size: 80
71949171 TCGAATGATG
* * *
71949181 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
71949245 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* ** **
71949259 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
71949322 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
71949339 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
71949363 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
78 10 0.11
79 66 0.74
80 13 0.15
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:71949386 original size:79 final size:79
Alignment explanation
Indices: 71949182--71949387 Score: 226
Period size: 79 Copynumber: 2.6 Consensus size: 79
71949172 CGAATGATGT
* * *
71949182 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGT-GACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATTT
*
71949245 GTGCGAGTTACTAATT
64 GTGCGAGTTACTAATA
* * *
71949261 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-TTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCATT
71949323 TGTGCGAGTTACT-ATAA
63 TGTGCGAGTTACTAAT-A
* **
71949340 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAA
71949388 ATTCCAAAGG
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
78 12 0.11
79 68 0.64
80 26 0.25
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:71961439 original size:80 final size:79
Alignment explanation
Indices: 71961302--71961465 Score: 224
Period size: 80 Copynumber: 2.1 Consensus size: 79
71961292 ACTAAGATCT
* **
71961302 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAA
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAA
*
71961366 ATCCGGGTTAAGTCCC
65 ATCC-GGTTAAATCCC
* *
71961382 GAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTAT
1 GAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAA
*
71961446 ATCCGGTTAAATTCC
65 ATCCGGTTAAATCCC
71961461 GAAGG
1 GAAGG
71961466 TACGTGATTT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
79 16 0.21
80 57 0.76
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAA
TCCGGTTAAATCCC
Found at i:71961446 original size:40 final size:40
Alignment explanation
Indices: 71961247--71961432 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
71961237 TTGAACGATG
* * * * *
71961247 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
71961287 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
71961327 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
71961367 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
71961408 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
71961433 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71970096 original size:5 final size:5
Alignment explanation
Indices: 71970088--71970151 Score: 103
Period size: 5 Copynumber: 12.6 Consensus size: 5
71970078 AAAATAAAAG
71970088 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTTT ATTATT -TTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A-TTTT ATT-TT ATTTT
71970139 ATTTT ATTTT ATT
1 ATTTT ATTTT ATT
71970152 ATTTTAGGAT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
4 2 0.04
5 47 0.84
6 7 0.12
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:71974671 original size:49 final size:50
Alignment explanation
Indices: 71974591--71974836 Score: 271
Period size: 49 Copynumber: 4.9 Consensus size: 50
71974581 ATCTATTGTG
* * *
71974591 AGGTCACGTGTGTAGAACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
71974641 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * * **
71974691 CGATCACGTGTGTAGTACTTAGTGCAAGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
71974741 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
71974791 -GGTCGCATCTGTAGTACTAAGTGCATGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
71974837 GCTTTGGCTA
Statistics
Matches: 163, Mismatches: 31, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
49 81 0.50
50 45 0.28
51 37 0.23
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:71974780 original size:101 final size:100
Alignment explanation
Indices: 71974594--71974782 Score: 279
Period size: 100 Copynumber: 1.9 Consensus size: 100
71974584 TATTGTGAGG
* * *
71974594 TCACGTGTGTAGAACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGAACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
*
71974659 AAGTGCAGGCTACTATGTGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTACGTGTACCCGATAACTTCGA
* * * ** *
71974694 TCACGTGTGTAGTACTTAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGAACTAAGTGCAAGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
71974759 TAAGTGCAGGCTACTACGTGTACC
65 TAAGTGCAGGCTACTACGTGTACC
71974783 AAATAAGTGG
Statistics
Matches: 78, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
100 40 0.51
101 38 0.49
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGAACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCCGATAACTTCGA
Found at i:71979000 original size:4 final size:4
Alignment explanation
Indices: 71978991--71979020 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
71978981 ATCGCTATAA
71978991 ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
71979021 TATTATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:71986909 original size:29 final size:28
Alignment explanation
Indices: 71986852--71986937 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 28
71986842 TACCTGTATC
* *
71986852 TGGCCCATTAAGCCCAATCAGATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
71986880 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* * * *
71986909 TAGACCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
71986937 T
1 T
71986938 TCATGCTCAC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 26 0.53
29 23 0.47
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:71989918 original size:40 final size:40
Alignment explanation
Indices: 71989874--71990103 Score: 397
Period size: 40 Copynumber: 5.7 Consensus size: 40
71989864 GCTACTAGCT
71989874 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
71989914 CAAATGCCTTCGGGACCTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
71989954 CAAATGCCTTCGGGACCTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
71989994 CAATATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
1 CAA-ATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
71990035 CAAATGCCTTCGGGACTTAGCTCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
71990075 CAAATGCCTTCGGGACTGAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
71990104 CAATCCGAAT
Statistics
Matches: 180, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 143 0.79
41 37 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:71990046 original size:81 final size:80
Alignment explanation
Indices: 71989874--71990099 Score: 389
Period size: 81 Copynumber: 2.8 Consensus size: 80
71989864 GCTACTAGCT
*
71989874 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACCTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
71989939 TTATAGTAACTCGCA
66 ATATAATAACTCGCA
*
71989954 CAAATGCCTTCGGGACCTAGCCCGGTTATAGTAACTCGCACAATATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAA-ATGCCTTCGGGACTTAGCCCG
71990019 GATATAATAACTCGCA
65 GATATAATAACTCGCA
* *
71990035 CAAATGCCTTCGGGACTTAGCTCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTGAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
71990100 TTATCAATCC
Statistics
Matches: 138, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
80 63 0.46
81 75 0.54
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:71990097 original size:121 final size:121
Alignment explanation
Indices: 71989877--71990103 Score: 402
Period size: 121 Copynumber: 1.9 Consensus size: 121
71989867 ACTAGCTCAA
* *
71989877 ATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACCTAGCCCGGTTA
1 ATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACCTAGCCCGGTTA
71989942 TAGTAACTCGCACAAATGCCTTCGGGACCTAGCCCGGTTATAGTAACTCGCACAAT
66 TAGTAACTCGCACAAATGCCTTCGGGACCTAGCCCGGTTATAGTAACTCGCACAAT
* *
71989998 ATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAGCTCGGTTA
1 ATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACCTAGCCCGGTTA
71990063 TAGTAACTCGCACAAATGCCTTCGGGA-CTGAGCCCGGTTAT
66 TAGTAACTCGCACAAATGCCTTCGGGACCT-AGCCCGGTTAT
71990104 CAATCCGAAT
Statistics
Matches: 101, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
120 2 0.02
121 99 0.98
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (121 bp):
ATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACCTAGCCCGGTTA
TAGTAACTCGCACAAATGCCTTCGGGACCTAGCCCGGTTATAGTAACTCGCACAAT
Found at i:71998767 original size:40 final size:40
Alignment explanation
Indices: 71998730--71998941 Score: 304
Period size: 40 Copynumber: 5.3 Consensus size: 40
71998720 GCTACTCGTT
* *
71998730 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
71998770 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
71998810 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
71998850 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
* * * *
71998890 CAAATGCCTTCGGG-CTTAGCTCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
71998929 CAAATGCCTTCGG
1 CAAATGCCTTCGG
71998942 ATCTTAGTTT
Statistics
Matches: 159, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 36 0.23
40 119 0.75
41 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:71998978 original size:79 final size:80
Alignment explanation
Indices: 71998730--71998994 Score: 322
Period size: 80 Copynumber: 3.3 Consensus size: 80
71998720 GCTACTCGTT
* * **
71998730 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
* *
71998793 GGATTTAGTAACTCGCA
64 GGATATAGTAACTAGCA
* *
71998810 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
* * *
71998875 ATTTAGTAACTCGTA
66 ATATAGTAACTAGCA
* * **
71998890 CAAATGCCTTCGGG-CTTAGCTCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTTTGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
* *
71998954 ATATGGTCACTTAGCA
66 ATATAGTAAC-TAGCA
71998970 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71998995 CATCATTCAA
Statistics
Matches: 164, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
79 63 0.38
80 99 0.60
81 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
ATATAGTAACTAGCA
Found at i:72001211 original size:40 final size:40
Alignment explanation
Indices: 72001167--72001355 Score: 324
Period size: 40 Copynumber: 4.7 Consensus size: 40
72001157 GCTACTAGCT
*
72001167 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
72001207 CAAATGCCTTCGGGACCTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
72001247 CGAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
72001287 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
72001327 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
72001356 CAATCCGAAT
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:72008172 original size:32 final size:33
Alignment explanation
Indices: 72008127--72008189 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 33
72008117 GCAGCGGGTT
72008127 CTGGGCCGAAG-CCCTTTTCAGA-ATACAGTAAA
1 CTGGGCCGAAGCCCCTTTTCAGATA-ACAGTAAA
72008159 CTGGGCC-ATAGCCCCTTTTCAGATAACAGTA
1 CTGGGCCGA-AGCCCCTTTTCAGATAACAGTA
72008190 TGGCCCGTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
31 1 0.04
32 9 0.32
33 17 0.61
34 1 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (33 bp):
CTGGGCCGAAGCCCCTTTTCAGATAACAGTAAA
Found at i:72022902 original size:18 final size:18
Alignment explanation
Indices: 72022879--72022917 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
72022869 AAAATGATTC
72022879 AATTAATGAA-TTTAATAT
1 AATTAATGAAGTTTAAT-T
*
72022897 AATTAATTAAGTTTAATT
1 AATTAATGAAGTTTAATT
72022915 AAT
1 AAT
72022918 AACTAAACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (18 bp):
AATTAATGAAGTTTAATT
Found at i:72025830 original size:43 final size:43
Alignment explanation
Indices: 72025782--72025899 Score: 218
Period size: 43 Copynumber: 2.7 Consensus size: 43
72025772 TGTATGAATT
*
72025782 TGTGTAAGACCATGTCTGGGACATTGGTATCGAAGTGATAAAA
1 TGTGTAAGACCATGTCTGGGACATTGGCATCGAAGTGATAAAA
72025825 TGTGTAAGACCATGTCTGGGACATTGGCATCGAAGTGATAAAA
1 TGTGTAAGACCATGTCTGGGACATTGGCATCGAAGTGATAAAA
*
72025868 TGTGTAAGACCATGTCTGGAACATTGGCATCG
1 TGTGTAAGACCATGTCTGGGACATTGGCATCG
72025900 TATATGACTC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 73 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (43 bp):
TGTGTAAGACCATGTCTGGGACATTGGCATCGAAGTGATAAAA
Found at i:72025937 original size:41 final size:42
Alignment explanation
Indices: 72025783--72025948 Score: 119
Period size: 43 Copynumber: 3.9 Consensus size: 42
72025773 GTATGAATTT
* * * * *
72025783 GTGTAAGACCATGTCTGGGACATTGGTATCGA-AGTGATAAAAT-
1 GTGTAAGACCATGTCTGGAACAGTGGCATCGATA-T-AT-GACTC
* * * *
72025826 GTGTAAGACCATGTCTGGGACATTGGCATCGA-AGTGATAAAAT-
1 GTGTAAGACCATGTCTGGAACAGTGGCATCGATA-T-AT-GACTC
*
72025869 GTGTAAGACCATGTCTGGAACATTGGCATCG-TATATGACTC
1 GTGTAAGACCATGTCTGGAACAGTGGCATCGATATATGACTC
* *
72025910 GTGTAAGACCCTGTCTAGG-ATAGTGGCATCGATATATGA
1 GTGTAAGACCATGTCT-GGAACAGTGGCATCGATATATGA
72025949 TAACATATAA
Statistics
Matches: 112, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
40 2 0.02
41 27 0.24
42 10 0.09
43 73 0.65
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGAACAGTGGCATCGATATATGACTC
Found at i:72025950 original size:86 final size:86
Alignment explanation
Indices: 72025782--72025951 Score: 202
Period size: 86 Copynumber: 2.0 Consensus size: 86
72025772 TGTATGAATT
* * *
72025782 TGTGTAAGACCATGTCTGGGACATTGGTATCGAAGTGATAAAATGTGTAAGACCATGTCTGGGAC
1 TGTGTAAGACCATGTCTGGAACATTGGCATCGAAGTGATAAAATGTGTAAGACCATGTCTAGGAC
* *
72025847 ATTGGCATCGAAGTGATAAAA
66 AGTGGCATCGAAATGATAAAA
* * * *
72025868 TGTGTAAGACCATGTCTGGAACATTGGCATCGTA-T-AT-GACTCGTGTAAGACCCTGTCTAGGA
1 TGTGTAAGACCATGTCTGGAACATTGGCATCGAAGTGATAAAAT-GTGTAAGACCATGTCTAGGA
*
72025930 TAGTGGCATCGATATATGATAA
65 CAGTGGCATCGA-A-ATGATAA
72025952 CATATAATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
83 2 0.03
84 30 0.42
85 2 0.03
86 37 0.52
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (86 bp):
TGTGTAAGACCATGTCTGGAACATTGGCATCGAAGTGATAAAATGTGTAAGACCATGTCTAGGAC
AGTGGCATCGAAATGATAAAA
Found at i:72027894 original size:20 final size:20
Alignment explanation
Indices: 72027866--72027903 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
72027856 AATTAATCTT
72027866 GTTTAATTA-ACTTAATTTAG
1 GTTTAATTATAC-TAATTTAG
*
72027886 GTTTTATTATACTAATTT
1 GTTTAATTATACTAATTT
72027904 TACTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.32, C:0.05, G:0.08, T:0.55
Consensus pattern (20 bp):
GTTTAATTATACTAATTTAG
Found at i:72030800 original size:27 final size:27
Alignment explanation
Indices: 72030781--72031192 Score: 518
Period size: 27 Copynumber: 15.2 Consensus size: 27
72030771 ATTACCAAAG
* **
72030781 TACCCTCGATTTATAGAATTATAATTT
1 TACCCTCGATTTACAGAATTACCATTT
**
72030808 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
**
72030835 TACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
72030862 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
72030889 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
72030916 TACTCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
72030943 TACCCTCGATTTATAGAATTATACTGTTT
1 TACCCTCGATTTACAGAA-T-TACCATTT
*
72030972 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
72030999 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
72031026 CACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
72031053 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
72031080 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * **
72031107 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
72031134 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
72031161 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
72031188 TACCC
1 TACCC
72031193 CTAGGGTGTT
Statistics
Matches: 339, Mismatches: 44, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
27 313 0.92
28 2 0.01
29 24 0.07
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:72030828 original size:54 final size:53
Alignment explanation
Indices: 72030781--72031192 Score: 590
Period size: 54 Copynumber: 7.6 Consensus size: 53
72030771 ATTACCAAAG
*
72030781 TACCCTCGATTTATAGAATTATAATTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTAT-ATTTTACCCTCGATTTACAGAATTACCGTTT
*
72030835 TACCCTCGATTTACAGAATTATTATTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTA-TATTTTACCCTCGATTTACAGAATTACCGTTT
* *
72030889 TACCCTCGATTTATAGAATTACTATTTTACTCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTA-TATTTTACCCTCGATTTACAGAATTACCGTTT
72030943 TACCCTCGATTTATAGAATTATACTGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTATA---TTTTACCCTCGATTTACAGAATTACCGTTT
* * * * *
72030999 TACCCTCGATTTATAAAATTACCATTTCACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTA-TATTTTACCCTCGATTTACAGAATTACCGTTT
* *
72031053 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTA-TATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
72031107 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTA-TATTTTACCCTCGATTTACAGAATTACCGTTT
* *
72031161 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAGAATTA-TATTTTACCC
72031193 CTAGGGTGTT
Statistics
Matches: 328, Mismatches: 25, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
53 2 0.01
54 276 0.84
55 1 0.00
56 48 0.15
57 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (53 bp):
TACCCTCGATTTATAGAATTATATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:72031472 original size:27 final size:26
Alignment explanation
Indices: 72031428--72031479 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72031418 CTCGTTGCAA
*
72031428 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
72031455 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
72031480 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:72031766 original size:25 final size:25
Alignment explanation
Indices: 72031738--72031801 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
72031728 CATTCACATT
* * *
72031738 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTATCACCTGATA
*
72031763 CTGATTCTGATTCTATCACCTGATT
1 CTGATTCTGATTCTATCACCTGATA
72031788 CTGATTCTGATTCT
1 CTGATTCTGATTCT
72031802 CATTTTGATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTATCACCTGATA
Found at i:72031774 original size:6 final size:6
Alignment explanation
Indices: 72031735--72031822 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
72031725 TTGCATTCAC
* * *
72031735 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCT- ATCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
72031785 ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
72031823 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 5 0.08
6 50 0.78
7 6 0.09
8 3 0.05
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:72035278 original size:40 final size:40
Alignment explanation
Indices: 72035217--72035463 Score: 293
Period size: 40 Copynumber: 6.2 Consensus size: 40
72035207 CGGAATTTAG
* * * *
72035217 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
72035257 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
72035297 CCGGAT-ATATCAACTCA-CACGAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACT-AGCACAAATGCCTTCGGGTCTTAAC
*
72035337 CCAGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
72035377 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
72035417 CCGGATAAAATCACTAGCACAAATGCCTTTGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
72035457 CCGGATA
1 CCGGATA
72035464 TCATTCAAAT
Statistics
Matches: 181, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.02
40 174 0.96
41 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:72037480 original size:15 final size:15
Alignment explanation
Indices: 72037460--72037489 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
72037450 TCCGACTAGG
*
72037460 GTCACATTTTGGGCT
1 GTCACAATTTGGGCT
72037475 GTCACAATTTGGGCT
1 GTCACAATTTGGGCT
72037490 AAAAGGGCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.20, G:0.27, T:0.37
Consensus pattern (15 bp):
GTCACAATTTGGGCT
Found at i:72037899 original size:27 final size:27
Alignment explanation
Indices: 72037624--72037898 Score: 390
Period size: 27 Copynumber: 10.2 Consensus size: 27
72037614 ATTACCAAAG
* *
72037624 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
**
72037651 TACCCTCGA-TTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
72037677 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
72037704 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
72037731 TACCCTCGATTCACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
72037758 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
72037785 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
72037812 TACCCTCGATTTACAGGATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
72037839 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
72037866 TACCCTTGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
72037893 TACCCT
1 TACCCT
72037899 TACGGTGTTA
Statistics
Matches: 226, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
26 23 0.10
27 203 0.90
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:72038244 original size:29 final size:27
Alignment explanation
Indices: 72038221--72038280 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
72038211 CGCCACATAT
72038221 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGGCCTAGCCACA
* * * *
72038247 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGGCCTAGCCACA
72038274 ATATCTG
1 ATATCTG
72038281 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGGCCTAGCCACA
Found at i:72038434 original size:31 final size:31
Alignment explanation
Indices: 72038399--72038508 Score: 118
Period size: 31 Copynumber: 3.5 Consensus size: 31
72038389 TTGTATTCGC
72038399 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
72038430 ATTCTGATTTTGATTTTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
72038461 ATTCTGATTCTGATTCTAATT--CTG-TCACCTG
1 ATTCTGATTTTGATTCT-GTTACCTGAT-A-CTG
72038492 ATTCTGATTTTGATTCT
1 ATTCTGATTTTGATTCT
72038509 CATTTTGATT
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
29 1 0.02
30 2 0.03
31 61 0.94
32 1 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:72038438 original size:6 final size:6
Alignment explanation
Indices: 72038399--72038529 Score: 72
Period size: 6 Copynumber: 21.3 Consensus size: 6
72038389 TTGTATTCGC
* * * *
72038399 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
72038448 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTA ATTCTG -TCACCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * *
72038498 ATTTTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
72038530 AATGTTTCTT
Statistics
Matches: 94, Mismatches: 20, Indels: 22
0.69 0.15 0.16
Matches are distributed among these distances:
5 5 0.05
6 78 0.83
7 8 0.09
8 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:72038462 original size:37 final size:37
Alignment explanation
Indices: 72038421--72038520 Score: 137
Period size: 37 Copynumber: 2.7 Consensus size: 37
72038411 ATTCTGTTAC
* *
72038421 CTGATACTGATTCTGATTTTGATTTTGTCACCTAATT
1 CTGATTCTGATTCTGATTTTGATTCTGTCACCTAATT
* * *
72038458 CTGATTCTGATTCTGATTCTAATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATTTTGATTCTGTCACCTAATT
* *
72038495 CTGATTTTGATTCTCATTTTGATTCT
1 CTGATTCTGATTCTGATTTTGATTCT
72038521 AGTTCTGATA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTTTGATTCTGTCACCTAATT
Found at i:72039963 original size:42 final size:42
Alignment explanation
Indices: 72039904--72040066 Score: 175
Period size: 42 Copynumber: 3.9 Consensus size: 42
72039894 TAGGGTTACT
* * *
72039904 GAGATTACGTGTCAGACCATATCTGGGATATGGCATCTATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATAC
* * * *
72039946 GAGATTTCGTATAAGACCAAATCTGGGATATGCCATCAATAC
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATAC
** * * *
72039988 GAGACTT-CGTGTAAGACCATGGCTGGGCTATTGCAATCGATAC
1 GAGA-TTACGTGTAAGACCATATCTGGGATATGGC-ATCAATAC
* *
72040031 GAGATTACATGTAAGACCATATCTGGGATATAGCAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCAT
72040067 TGTTATGGTA
Statistics
Matches: 98, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 63 0.64
43 35 0.36
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATAC
Found at i:72041646 original size:31 final size:32
Alignment explanation
Indices: 72041589--72041650 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
72041579 ACGAAGTCAC
* *
72041589 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
72041621 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
72041651 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:72041673 original size:71 final size:67
Alignment explanation
Indices: 72041596--72041736 Score: 201
Period size: 67 Copynumber: 2.0 Consensus size: 67
72041586 CACCAGATAT
* * *
72041596 AGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGAG
1 AGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGAG
72041661 GCTGCC
62 GCTGCC
* *
72041667 AGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTG
1 AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTG
72041732 CC
66 CC
72041734 AGA
1 AGA
72041737 ATGCTTCCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
67 41 0.63
71 24 0.37
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.18
Consensus pattern (67 bp):
AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTG
CC
Found at i:72041714 original size:27 final size:26
Alignment explanation
Indices: 72041666--72041717 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72041656 GCGAGGCTGC
*
72041666 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
72041692 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
72041718 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72044388 original size:39 final size:40
Alignment explanation
Indices: 72044285--72044508 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
72044275 GCTCCTCGTT
*
72044285 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
72044325 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
72044365 CAAATGCC-TCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
72044404 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
72044443 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
72044484 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72044509 CATCATTCAA
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 70 0.43
40 78 0.48
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:72044388 original size:79 final size:80
Alignment explanation
Indices: 72044285--72044508 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
72044275 GCTCCTCGTT
* *
72044285 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
72044350 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* *
72044365 CAAATGCC-TCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
72044427 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * * * *
72044443 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
72044506 GGA
64 GGA
72044509 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 34 0.27
79 63 0.50
80 28 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:72052210 original size:118 final size:119
Alignment explanation
Indices: 72052029--72052250 Score: 299
Period size: 118 Copynumber: 1.9 Consensus size: 119
72052019 TCCTCGTTCA
*
72052029 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
72052094 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * **
72052148 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
72052210 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
72052251 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 66 0.73
119 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:72052250 original size:40 final size:40
Alignment explanation
Indices: 72052027--72052250 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
72052017 GCTCCTCGTT
* *
72052027 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
72052067 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
72052107 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
72052147 C-AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
72052185 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
72052226 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72052251 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 24 0.15
39 21 0.13
40 107 0.65
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:72054125 original size:79 final size:79
Alignment explanation
Indices: 72053990--72054206 Score: 244
Period size: 79 Copynumber: 2.7 Consensus size: 79
72053980 CGAATGATGT
* * **
72053990 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCATTT
*
72054054 GTGCGAGTTACTA-ATT
64 GTGCGAGTTACTATA-A
* * *
72054070 TCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGCATTTG
72054134 TGCGAGTTACTATAA
65 TGCGAGTTACTATAA
* ** * *
72054149 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTT-AAGTCCGAAGG
72054207 TACGTGATTC
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 1 0.01
79 70 0.60
80 45 0.39
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTGT
GCGAGTTACTATAA
Found at i:72054180 original size:40 final size:40
Alignment explanation
Indices: 72053989--72054192 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
72053979 TCGAATGATG
* *
72053989 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
72054029 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
72054068 TTTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
72054108 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * ** *
72054148 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
72054188 TCCGG
1 TCCGG
72054193 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
39 34 0.24
40 99 0.70
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:72061267 original size:39 final size:40
Alignment explanation
Indices: 72061167--72061363 Score: 206
Period size: 40 Copynumber: 5.0 Consensus size: 40
72061157 TCAAATGATG
* *
72061167 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
72061206 ACCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
** * *
72061247 TTTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
72061286 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * **
72061325 AACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTACTA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
72061364 TATCCGGTTA
Statistics
Matches: 130, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
39 34 0.26
40 86 0.66
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:72061309 original size:79 final size:79
Alignment explanation
Indices: 72061220--72061384 Score: 208
Period size: 79 Copynumber: 2.1 Consensus size: 79
72061210 GGACTAAGAT
*** **
72061220 CCGAAGGCATTTGTGCGAGTTACTA-ATTTTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 CCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCATTGGAACGAGTTACT
*
72061283 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* *
72061299 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTGGAACGAGTTACTA
* *
72061364 TATCCGGTTAAATT
66 AATCCGGTTAAATC
72061378 CCGAAGG
1 CCGAAGG
72061385 TACGTGATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 46 0.62
80 28 0.38
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTGGAACGAGTTACTA
AATCCGGTTAAATC
Found at i:72069622 original size:27 final size:26
Alignment explanation
Indices: 72069574--72069625 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72069564 GCGAGGCTGC
*
72069574 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
72069600 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
72069626 TTACAGTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72073497 original size:15 final size:15
Alignment explanation
Indices: 72073477--72073506 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
72073467 GCCATCAGAG
72073477 TTGCAAAAGATCCAT
1 TTGCAAAAGATCCAT
72073492 TTGCAAAAGATCCAT
1 TTGCAAAAGATCCAT
72073507 AATGTGTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (15 bp):
TTGCAAAAGATCCAT
Found at i:72076925 original size:41 final size:42
Alignment explanation
Indices: 72076857--72076936 Score: 108
Period size: 41 Copynumber: 1.9 Consensus size: 42
72076847 GTGATAAAAT
* * *
72076857 GTGTAAGACCATGTCTGGGGCATTGGCATCG-TATATGACTC
1 GTGTAAGACCATGTCTAGGACAGTGGCATCGATATATGACTC
* *
72076898 GTGTAAGACCCTGTCTAGGATAGTGGCATCGATATATGA
1 GTGTAAGACCATGTCTAGGACAGTGGCATCGATATATGA
72076937 TAACATATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
41 26 0.79
42 7 0.21
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATGTCTAGGACAGTGGCATCGATATATGACTC
Found at i:72078881 original size:20 final size:20
Alignment explanation
Indices: 72078853--72078890 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
72078843 AATTAATCTT
72078853 GTTTAATTA-ACTTAATTTAG
1 GTTTAATTATAC-TAATTTAG
*
72078873 GTTTTATTATACTAATTT
1 GTTTAATTATACTAATTT
72078891 TACTATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.32, C:0.05, G:0.08, T:0.55
Consensus pattern (20 bp):
GTTTAATTATACTAATTTAG
Found at i:72081601 original size:42 final size:41
Alignment explanation
Indices: 72081553--72081716 Score: 168
Period size: 42 Copynumber: 3.9 Consensus size: 41
72081543 TTAGGGTTAC
* * *
72081553 TGAGATTATGTGTCAGACCATATCTGGGATATGACATCTATA
1 TGAGATT-CGTGTAAGACCATATCTGGGATATGGCATCTATA
*
72081595 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCAATA
1 TGAGA-TTCGTGTAAGACCATATCTGGGATATGGCATCTATA
* ** * *
72081637 TAAGACTTCGTGTAAGACCATCGCTGGGCTATTGGCGT-TGATA
1 TGAGA-TTCGTGTAAGACCATATCTGGGATA-TGGCATCT-ATA
* *
72081680 CGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATT-CGTGTAAGACCATATCTGGGATATGGCAT
72081717 TGTTATGGTA
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
42 68 0.68
43 32 0.32
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (41 bp):
TGAGATTCGTGTAAGACCATATCTGGGATATGGCATCTATA
Found at i:72085562 original size:42 final size:42
Alignment explanation
Indices: 72085504--72085666 Score: 172
Period size: 42 Copynumber: 3.9 Consensus size: 42
72085494 TGGCAATAGG
72085504 ATTATGAG-TTTAAGTGTAAGACCATATCTGGGATATGGCATC
1 ATTATGAGATTT-AGTGTAAGACCATATCTGGGATATGGCATC
* **
72085546 ATTATGAGATTTAGTGTAAGACCATGTCTGGGACCTGGCATC
1 ATTATGAGATTTAGTGTAAGACCATATCTGGGATATGGCATC
* * * *
72085588 GA-TATGAGA-ATCGTGTAAGACCATAGCTGGGCTATTGGCATC
1 -ATTATGAGATTTAGTGTAAGACCATATCTGGGATA-TGGCATC
* **
72085630 AATATGAGATCCCA-TGTAAGACCATATCTGGGATATG
1 ATTATGAGAT-TTAGTGTAAGACCATATCTGGGATATG
72085667 ACATTGGTAT
Statistics
Matches: 100, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
41 19 0.19
42 58 0.58
43 23 0.23
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (42 bp):
ATTATGAGATTTAGTGTAAGACCATATCTGGGATATGGCATC
Found at i:72096681 original size:46 final size:48
Alignment explanation
Indices: 72096574--72096845 Score: 179
Period size: 46 Copynumber: 5.7 Consensus size: 48
72096564 GGTTATTATG
* * *
72096574 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA-G-ATGA
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGAGGCAT-A
* *
72096621 GAGCTAATGTAAGA-CATGTTTGGGACAT-GCATCAGCCTCGAGGCATA
1 -AGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGAGGCATA
* *
72096668 AGCCAGTGTAAGA-CATGTCTT-GGACAT-GCAT-GGCCTCGAGACATA
1 AGCCAGTGTAAGACCATGT-TTGGGACATGGCATCAGCCTCGAGGCATA
* * * *** *
72096713 AGCCAGTGTAAGACCATGTCTAGAACATGGCATCAGCACAAATATGTG-A-G
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGC-C-TCGA-G-GCATA
* * * * * *
72096763 AGCTAGTGTAAGACCATGTCTGGGACATGACGTCGGCCTCGATGACGAT-
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGA-GGC-ATA
* * *
72096812 AGTCAGTGTAAGACCATGTCTAGGACATGGCATC
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATC
72096846 GGCATTCTAC
Statistics
Matches: 178, Mismatches: 32, Indels: 27
0.75 0.14 0.11
Matches are distributed among these distances:
45 26 0.15
46 46 0.26
47 22 0.12
48 18 0.10
49 32 0.18
50 32 0.18
51 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGAGGCATA
Found at i:72102852 original size:27 final size:28
Alignment explanation
Indices: 72102799--72102888 Score: 141
Period size: 27 Copynumber: 3.3 Consensus size: 28
72102789 ATGTACTAGA
72102799 ATACCCCTATGTATGCAAAATTA-CATT
1 ATACCCCTATGTATGCAAAATTACCATT
72102826 ATACCCCTATG-ATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* *
72102853 ATA-CCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
72102880 ATACCCCTA
1 ATACCCCTA
72102889 GGGTTAATTT
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
26 18 0.31
27 35 0.60
28 5 0.09
ACGTcount: A:0.36, C:0.26, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:72103052 original size:27 final size:28
Alignment explanation
Indices: 72102994--72103083 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
72102984 AGGAAGCGTC
*
72102994 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
72103022 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
72103049 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
72103078 CTGGTG
1 CTGGTG
72103084 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:72103094 original size:29 final size:28
Alignment explanation
Indices: 72103004--72103094 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
72102994 CTGGTGGCTA
* * *
72103004 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
72103032 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
72103059 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
72103088 TGTCACA
1 TGCCACA
72103095 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:72103102 original size:55 final size:56
Alignment explanation
Indices: 72102994--72103108 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
72102984 AGGAAGCGTC
* * *
72102994 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
72103049 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
72103105 CTGG
1 CTGG
72103109 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:72103571 original size:19 final size:19
Alignment explanation
Indices: 72103547--72103585 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
72103537 TTTTAATTAT
* *
72103547 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
72103566 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
72103585 T
1 T
72103586 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:72104197 original size:11 final size:10
Alignment explanation
Indices: 72104169--72104202 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
72104159 AGCCTGTAAG
72104169 TATTCTGAAT
1 TATTCTGAAT
*
72104179 TTTTCTGAAT
1 TATTCTGAAT
72104189 ATATTCTGAAT
1 -TATTCTGAAT
72104200 TAT
1 TAT
72104203 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:72110731 original size:28 final size:28
Alignment explanation
Indices: 72110691--72110783 Score: 152
Period size: 28 Copynumber: 3.3 Consensus size: 28
72110681 ATGTACTAGA
*
72110691 ATACCCCTATGTATGCAAAATTATCATT
1 ATACCCCTATGTATGCAAAATTACCATT
72110719 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
72110747 ATACCCCTATGTATGCAAAATGACC-TCT
1 ATACCCCTATGTATGCAAAATTACCAT-T
72110775 ATACCCCTA
1 ATACCCCTA
72110784 GGGTTAATTT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 1 0.02
28 61 0.98
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:72110930 original size:28 final size:27
Alignment explanation
Indices: 72110889--72110978 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
72110879 AGGAAGCGTC
72110889 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
72110917 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
72110944 CTGGTGGAACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
72110973 CTGGTG
1 CTGGTG
72110979 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:72110989 original size:29 final size:28
Alignment explanation
Indices: 72110899--72110978 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 28
72110889 CTGGTGGCTA
* **
72110899 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGGAAC
**
72110927 TGCCAC-GTATATCTGTTCTGGTGGAAC
1 TGCCACAAAATATCTGTTCTGGTGGAAC
72110954 TGCCACAAAATATCTGTATCTGGTG
1 TGCCACAAAATATCTGT-TCTGGTG
72110979 ACTCTGTCAC
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 22 0.51
28 14 0.33
29 7 0.16
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGGAAC
Found at i:72110997 original size:55 final size:56
Alignment explanation
Indices: 72110899--72111003 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 56
72110889 CTGGTGGCTA
* * *
72110899 TGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-TCTGGTGGAAC
1 TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGAAC
* * *
72110954 TGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTATCTGG
1 TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTATCTGG
72111004 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
55 22 0.52
56 20 0.48
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (56 bp):
TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGAAC
Found at i:72111466 original size:19 final size:19
Alignment explanation
Indices: 72111442--72111480 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
72111432 TTTTAATTAT
* *
72111442 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
72111461 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
72111480 T
1 T
72111481 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:72115418 original size:27 final size:27
Alignment explanation
Indices: 72115380--72115432 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
72115370 ATATATACGG
*
72115380 CATATAGGGGCAAAACAGTCATCTTAC
1 CATATAAGGGCAAAACAGTCATCTTAC
72115407 CATATAAGGGCAAAACAGTCATCTTA
1 CATATAAGGGCAAAACAGTCATCTTA
72115433 TCATTCATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (27 bp):
CATATAAGGGCAAAACAGTCATCTTAC
Found at i:72123449 original size:20 final size:20
Alignment explanation
Indices: 72123402--72123449 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
72123392 AGTAAGCTCG
72123402 GTTGAGCTCAAATGAGCTAA
1 GTTGAGCTCAAATGAGCTAA
**** *
72123422 AACAAGCTCAAATGAGCTGA
1 GTTGAGCTCAAATGAGCTAA
72123442 GTTGAGCT
1 GTTGAGCT
72123450 GGACAGAGCT
Statistics
Matches: 19, Mismatches: 9, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (20 bp):
GTTGAGCTCAAATGAGCTAA
Found at i:72124343 original size:22 final size:22
Alignment explanation
Indices: 72124315--72124367 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
72124305 GTGCCAAAGG
*
72124315 CACACGGGTGTGTCCCTATGTC
1 CACACGGGCGTGTCCCTATGTC
72124337 CACACGGGCGTGTCCCTATGTC
1 CACACGGGCGTGTCCCTATGTC
72124359 CACACGGGC
1 CACACGGGC
72124368 ATGTGACCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.15, C:0.36, G:0.28, T:0.21
Consensus pattern (22 bp):
CACACGGGCGTGTCCCTATGTC
Found at i:72126143 original size:14 final size:15
Alignment explanation
Indices: 72126118--72126156 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
72126108 GGTATCATGA
72126118 TTGGATTTTCTT-GTT
1 TTGGA-TTTCTTCGTT
72126133 TTGGATTTCTTCGTT
1 TTGGATTTCTTCGTT
*
72126148 ATGGATTTC
1 TTGGATTTC
72126157 CTTATCGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.10, C:0.10, G:0.21, T:0.59
Consensus pattern (15 bp):
TTGGATTTCTTCGTT
Found at i:72136977 original size:15 final size:15
Alignment explanation
Indices: 72136957--72136988 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
72136947 AAATAATAAT
*
72136957 TTATATATATTTATC
1 TTATATACATTTATC
72136972 TTATATACATTTATC
1 TTATATACATTTATC
72136987 TT
1 TT
72136989 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:72137855 original size:14 final size:14
Alignment explanation
Indices: 72137829--72137873 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
72137819 TAAACCTGCT
*
72137829 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
72137843 TATATCTTAAACCA
1 TAAACCTTAAACCA
*
72137857 TAAACCTTAAACTA
1 TAAACCTTAAACCA
72137871 TAA
1 TAA
72137874 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:72138125 original size:40 final size:40
Alignment explanation
Indices: 72138031--72138166 Score: 200
Period size: 40 Copynumber: 3.4 Consensus size: 40
72138021 GTTATATGAC
** *
72138031 TTTTAGCGGCAATTGACCAAAAGCGCAGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCT-GT
* *
72138072 TTTTAGCGGCGTTTTACCAAAAGCACTGCTAATGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTGT
*
72138112 TTTTAGCAGCGTTTTACCAAAAGCGCAGCTAATGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTGT
*
72138152 TTTTAGTGGCGTTTT
1 TTTTAGCGGCGTTTT
72138167 TTGATAAAAC
Statistics
Matches: 85, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 52 0.61
41 33 0.39
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.35
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTGT
Found at i:72139737 original size:23 final size:23
Alignment explanation
Indices: 72139707--72139801 Score: 165
Period size: 23 Copynumber: 4.1 Consensus size: 23
72139697 AGGAAGTGAA
72139707 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
72139730 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
72139753 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
72139775 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
72139799 AAA
1 AAA
72139802 AGAGGTTGGG
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
22 10 0.14
23 49 0.71
24 10 0.14
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:72140052 original size:31 final size:31
Alignment explanation
Indices: 72140016--72140079 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
72140006 CGTTTACAGT
*
72140016 AAAGGCTTCGGCCTAGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGAAATATGAAATATGA
***
72140047 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGAAATATGAAATATGA
72140078 AA
1 AA
72140080 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGAAATATGAAATATGA
Found at i:72142338 original size:39 final size:39
Alignment explanation
Indices: 72142134--72142356 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
72142124 TTGAATGCTG
* * * * * *
72142134 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
72142174 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
72142214 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
72142254 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
72142294 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
72142333 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72142357 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 38 0.25
40 106 0.69
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:72142376 original size:79 final size:80
Alignment explanation
Indices: 72142214--72142391 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
72142204 AGATACAAGT
* * * *
72142214 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
72142279 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
72142294 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
72142358 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
72142373 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
72142392 TATGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:72148401 original size:27 final size:27
Alignment explanation
Indices: 72148371--72148439 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
72148361 GTAGGCTAGT
* *
72148371 ATTACTGAAATACCCCTATATGGTAGA
1 ATTACTGAAATACCCCTATAAGGTAAA
* *
72148398 ATTACTGAAATGCCCCTGTAAGGTAAA
1 ATTACTGAAATACCCCTATAAGGTAAA
*
72148425 ATTACTAAAATACCC
1 ATTACTGAAATACCC
72148440 TTGGTTTACA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (27 bp):
ATTACTGAAATACCCCTATAAGGTAAA
Found at i:72148452 original size:27 final size:27
Alignment explanation
Indices: 72148422--72148792 Score: 218
Period size: 27 Copynumber: 13.7 Consensus size: 27
72148412 CCTGTAAGGT
* *
72148422 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACTAAAATACCCTTGATTTGC
* * *
72148449 AAAATTACT-GAATACCCTTGGTTTAC
1 AAAATTACTAAAATACCCTTGATTTGC
* * * *
72148475 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACTAAAATACCCTTGATTTGC
* *
72148502 AAAATTA-TCAAAATACCCCTGATTTGT
1 AAAATTACT-AAAATACCCTTGATTTGC
* * ** * *
72148529 GAAATTTCTAAAATACTTTTGACTTGT
1 AAAATTACTAAAATACCCTTGATTTGC
* * * *
72148556 AAAATTAAC-GAAATA-CCTTCAACTTGT
1 AAAATT-ACTAAAATACCCTT-GATTTGC
* ** **
72148583 AAAATTACTGAAATACCCTCAATTTTT
1 AAAATTACTAAAATACCCTTGATTTGC
* * * * *
72148610 AAAATTACCAATATACCCCTAATTTGG
1 AAAATTACTAAAATACCCTTGATTTGC
* *
72148637 AAAATTA-TAGAAATACCCCTGATTTAC
1 AAAATTACTA-AAATACCCTTGATTTGC
* * *
72148664 AAAATTATTGAAATACCCTTGATTTGG
1 AAAATTACTAAAATACCCTTGATTTGC
* * * *
72148691 AAAGTTACAAAAATACCCCTGATTTAC
1 AAAATTACTAAAATACCCTTGATTTGC
72148718 AAAATTAC-AGAAATACCCTTGACTTT-C
1 AAAATTACTA-AAATACCCTTGA-TTTGC
* *
72148745 AAAAATTAC-AGAAATACCATTGGTTTGC
1 -AAAATTACTA-AAATACCCTTGATTTGC
**
72148773 AAAATTACCGAAATACCCTT
1 AAAATTACTAAAATACCCTT
72148793 AGTTTGTGGA
Statistics
Matches: 278, Mismatches: 52, Indels: 28
0.78 0.15 0.08
Matches are distributed among these distances:
26 30 0.11
27 218 0.78
28 30 0.11
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTGATTTGC
Found at i:72148948 original size:20 final size:20
Alignment explanation
Indices: 72148925--72148969 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
72148915 GACTATGTTT
72148925 TGATTGAGAATG-TATGACTG
1 TGATTG-GAATGTTATGACTG
* *
72148945 TGATTGGACTGTTGTGACTG
1 TGATTGGAATGTTATGACTG
72148965 TGATT
1 TGATT
72148970 TGTATGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.22, C:0.07, G:0.31, T:0.40
Consensus pattern (20 bp):
TGATTGGAATGTTATGACTG
Found at i:72149099 original size:41 final size:41
Alignment explanation
Indices: 72149054--72149219 Score: 228
Period size: 41 Copynumber: 4.0 Consensus size: 41
72149044 CGGAGGAAGA
*
72149054 ATTGAGGATCGCATGGTTGCTTGATGAACGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGAACGTGGATCCACCG
* *
72149095 ATTGAGAATCGCATGGTTTCTTGACG-ACTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGAAC-GTGGATCCACCG
* * *
72149136 A-TGAATGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
1 ATTG-AGGATCGCATGGTTGCTTGACGAACGTGGATCCACCG
* *
72149177 ATTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGAACGTGGATCCACCG
72149218 AT
1 AT
72149220 GGGTTTTAAG
Statistics
Matches: 110, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
40 4 0.04
41 104 0.95
42 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGAACGTGGATCCACCG
Found at i:72149200 original size:82 final size:82
Alignment explanation
Indices: 72149060--72149220 Score: 277
Period size: 82 Copynumber: 2.0 Consensus size: 82
72149050 AAGAATTGAG
* * *
72149060 GATCGCATGGTTGCTTGATGAACGTGGATCCACCGATTGAGAATCGCATGGTTTCTTGACGACTG
1 GATCGCATGGTTGCTTGATGAACGTGGATCCACCGATTAAGAATCGCATGGTTGCTTGACGACCG
72149125 TGGATCCACCGATGAAT
66 TGGATCCACCGATGAAT
* *
72149142 GATCGCATGGTTGCTTGATGACCGTGGATCCACCGATTAAGGATCGCATGGTTGCTTGACGACCG
1 GATCGCATGGTTGCTTGATGAACGTGGATCCACCGATTAAGAATCGCATGGTTGCTTGACGACCG
72149207 TGGATCCACCGATG
66 TGGATCCACCGATG
72149221 GGTTTTAAGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (82 bp):
GATCGCATGGTTGCTTGATGAACGTGGATCCACCGATTAAGAATCGCATGGTTGCTTGACGACCG
TGGATCCACCGATGAAT
Found at i:72149410 original size:22 final size:21
Alignment explanation
Indices: 72149359--72149422 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
72149349 GTCAATTATT
* *
72149359 CTATTATGGCTTTGTACCAAC
1 CTATTATGGCTCTGTGCCAAC
*
72149380 CTACATATGGCTCTGTGCCAAC
1 CTA-TTATGGCTCTGTGCCAAC
72149402 CTGATTATGGC-CATGTGCCAA
1 CT-ATTATGGCTC-TGTGCCAA
72149423 ACGTATTTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 4 0.11
22 31 0.86
23 1 0.03
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (21 bp):
CTATTATGGCTCTGTGCCAAC
Found at i:72151244 original size:20 final size:22
Alignment explanation
Indices: 72151194--72151244 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
72151184 GAATATAGAA
* *
72151194 ATTGTATGCTTGTGTGGTAAAT
1 ATTGTTTGCTTCTGTGGTAAAT
72151216 ATTTGTTTGCTTCTGTGGT-AAT
1 A-TTGTTTGCTTCTGTGGTAAAT
72151238 A-TGTTTG
1 ATTGTTTG
72151245 GTTGGGTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 6 0.23
22 5 0.19
23 15 0.58
ACGTcount: A:0.18, C:0.06, G:0.25, T:0.51
Consensus pattern (22 bp):
ATTGTTTGCTTCTGTGGTAAAT
Found at i:72153595 original size:40 final size:40
Alignment explanation
Indices: 72153539--72153741 Score: 268
Period size: 40 Copynumber: 5.1 Consensus size: 40
72153529 CGAAATTTAA
* * *
72153539 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
72153579 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
72153619 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
72153659 CCGGATATAATAACTCGCACAATTACCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
72153698 CCGGA-ATTAGTCACTAGCACAAATTCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
72153738 CCGG
1 CCGG
72153742 TTATCATCCG
Statistics
Matches: 145, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 33 0.23
40 111 0.77
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:72155780 original size:27 final size:27
Alignment explanation
Indices: 72155750--72155827 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
72155740 CTCATATCTG
* *
72155750 TAGGCTAGTATTACTGAAATACCCCTA
1 TAGGGTAGAATTACTGAAATACCCCTA
* * *
72155777 TAGGGTAGAATTACTAAAATGCCGCTA
1 TAGGGTAGAATTACTGAAATACCCCTA
*
72155804 TAGGGTAGAATTATTGAAATACCC
1 TAGGGTAGAATTACTGAAATACCC
72155828 TTGGTTTACA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATACCCCTA
Found at i:72155842 original size:27 final size:27
Alignment explanation
Indices: 72155819--72156185 Score: 209
Period size: 27 Copynumber: 13.6 Consensus size: 27
72155809 TAGAATTATT
* * *
72155819 GAAATACCCTTGGTTTACAAAATTACT
1 GAAATACCCTTGATTTGCAAAATTACC
* * *
72155846 G-AATACCCTTGGTATACAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* * * * *
72155872 AAAATACCCCTGGTTTGTAAAATTATC
1 GAAATACCCTTGATTTGCAAAATTACC
* * * *** * *
72155899 AAAATACCCCTAATTTTTGAAATTGCT
1 GAAATACCCTTGATTTGCAAAATTACC
* * * *
72155926 AAAATACCCTCGACTTGTAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
** ** * *
72155953 GAAATACCCACGGCTTGTAAAATTATC
1 GAAATACCCTTGATTTGCAAAATTACC
* *
72155980 GAAATACCCTCGATTTGTAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* * * * **
72156007 AAAATACCCCTAATTTGGAAAATTATA
1 GAAATACCCTTGATTTGCAAAATTACC
* * *
72156034 GAAATACCTTTGATTTACAAAATTACT
1 GAAATACCCTTGATTTGCAAAATTACC
* * *
72156061 GAAATACCCTTGATTTGGAAAGTTACA
1 GAAATACCCTTGATTTGCAAAATTACC
* * * *
72156088 AAAATACCC-TAATTTACAAAATTACA
1 GAAATACCCTTGATTTGCAAAATTACC
* *
72156114 GAAATACCCTTAACTTT-CAAAAATTACA
1 GAAATACCCTTGA-TTTGC-AAAATTACC
* * * *
72156142 AAAATACCATTGGTTTGCAAAATTACT
1 GAAATACCCTTGATTTGCAAAATTACC
*
72156169 GAAATACCCTTGGTTTG
1 GAAATACCCTTGATTTG
72156186 TGGATTTACC
Statistics
Matches: 271, Mismatches: 64, Indels: 10
0.79 0.19 0.03
Matches are distributed among these distances:
26 44 0.16
27 205 0.76
28 22 0.08
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
GAAATACCCTTGATTTGCAAAATTACC
Found at i:72155855 original size:26 final size:27
Alignment explanation
Indices: 72155812--72155885 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 27
72155802 TATAGGGTAG
* *
72155812 AATTATTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGGTATACAA
72155839 AATTACTG-AATACCCTTGGTATACAA
1 AATTACTGAAATACCCTTGGTATACAA
** *
72155865 AATTACCAAAATACCCCTGGT
1 AATTACTGAAATACCCTTGGT
72155886 TTGTAAAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 23 0.56
27 18 0.44
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGGTATACAA
Found at i:72157870 original size:13 final size:12
Alignment explanation
Indices: 72157850--72157888 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
72157840 TAAATTGCAA
72157850 AAAAATAAATTG
1 AAAAATAAATTG
*
72157862 AAGAAATAAAATG
1 AA-AAATAAATTG
72157875 AAAAATAAA-TG
1 AAAAATAAATTG
72157886 AAA
1 AAA
72157889 TATATGGACC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 5 0.20
12 9 0.36
13 11 0.44
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (12 bp):
AAAAATAAATTG
Found at i:72158658 original size:35 final size:35
Alignment explanation
Indices: 72158618--72158776 Score: 167
Period size: 35 Copynumber: 4.5 Consensus size: 35
72158608 GTATTTACAT
72158618 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
72158653 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
72158688 ATGTGAT-ATTTTATTGAGCTTGTATATTCGGTCAT
1 ATGTGATGA-TATATTGAACTTGTATATTTGGCCAC
* ** *
72158723 ATATGATGATATATTTTACTTGTATATTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
*
72158758 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
72158777 CTTAAGTATT
Statistics
Matches: 96, Mismatches: 26, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
35 95 0.99
36 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:72160207 original size:16 final size:16
Alignment explanation
Indices: 72160186--72160217 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
72160176 AATGAGTTAA
72160186 TTTTGAATACATGTAG
1 TTTTGAATACATGTAG
72160202 TTTTGAATACATGTAG
1 TTTTGAATACATGTAG
72160218 ATTAAGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (16 bp):
TTTTGAATACATGTAG
Found at i:72173106 original size:25 final size:27
Alignment explanation
Indices: 72173067--72173170 Score: 106
Period size: 27 Copynumber: 4.0 Consensus size: 27
72173057 CCCTAATTGA
* *
72173067 TAAAATGTCTTTTTTGTCC-T-TGTGG
1 TAAAATGACTATTTTGTCCTTATGTGG
* *
72173092 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGTCCTTATGTGG
* *
72173119 TAAAATGACTATTTTGTGCTTATATGG
1 TAAAATGACTATTTTGTCCTTATGTGG
* * *
72173146 TAAGATAACTATTTTG-CCCTATGTG
1 TAAAATGACTATTTTGTCCTTATGTG
72173171 ATGTATATAT
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
25 16 0.25
26 7 0.11
27 42 0.65
ACGTcount: A:0.24, C:0.12, G:0.19, T:0.44
Consensus pattern (27 bp):
TAAAATGACTATTTTGTCCTTATGTGG
Found at i:72173117 original size:27 final size:27
Alignment explanation
Indices: 72173087--72173170 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
72173077 TTTTTGTCCT
*
72173087 TGTGGTAAAATGACTGTTTTGCCCTTA
1 TGTGGTAAAATGACTATTTTGCCCTTA
**
72173114 TGTGGTAAAATGACTATTTTGTGCTTA
1 TGTGGTAAAATGACTATTTTGCCCTTA
* * *
72173141 TATGGTAAGATAACTATTTTGCCC-TA
1 TGTGGTAAAATGACTATTTTGCCCTTA
72173167 TGTG
1 TGTG
72173171 ATGTATATAT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
26 5 0.10
27 43 0.90
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (27 bp):
TGTGGTAAAATGACTATTTTGCCCTTA
Done.