Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 219 of 352
Found at i:72188928 original size:18 final size:18
Alignment explanation
Indices: 72188905--72188941 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
72188895 TAGTGTGTCT
72188905 CACACGGCCAAAGACACA
1 CACACGGCCAAAGACACA
72188923 CACACGGCCAAAGACACA
1 CACACGGCCAAAGACACA
72188941 C
1 C
72188942 TCGTGTCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.41, G:0.16, T:0.00
Consensus pattern (18 bp):
CACACGGCCAAAGACACA
Found at i:72191393 original size:18 final size:17
Alignment explanation
Indices: 72191366--72191432 Score: 64
Period size: 18 Copynumber: 3.8 Consensus size: 17
72191356 CAAATTTATA
*
72191366 TTTTTCTTTTCTTTTCT
1 TTTTTCTTTTCTCTTCT
72191383 TTTTTCATTTTCTCTTCT
1 TTTTTC-TTTTCTCTTCT
* *
72191401 TCTAT-TTTTCTTCTTCTT
1 TTTTTCTTTTC-TCTTC-T
72191419 GTTTTTCTTTTCTC
1 -TTTTTCTTTTCTC
72191433 CCCTATAGCC
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
16 5 0.12
17 11 0.28
18 14 0.35
19 5 0.12
20 5 0.12
ACGTcount: A:0.03, C:0.21, G:0.01, T:0.75
Consensus pattern (17 bp):
TTTTTCTTTTCTCTTCT
Found at i:72191414 original size:14 final size:13
Alignment explanation
Indices: 72191364--72191431 Score: 61
Period size: 14 Copynumber: 5.1 Consensus size: 13
72191354 TGCAAATTTA
72191364 TATTTTTCTTTTC
1 TATTTTTCTTTTC
72191377 T-TTTCTT-TTTTC
1 TATTT-TTCTTTTC
72191389 -ATTTTCTCTTCTTC
1 TATTTT-TCTT-TTC
72191403 TATTTTTCTTCTTC
1 TATTTTTCTT-TTC
*
72191417 TTGTTTTTCTTTTC
1 -TATTTTTCTTTTC
72191431 T
1 T
72191432 CCCCTATAGC
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
11 1 0.02
12 12 0.26
13 6 0.13
14 14 0.30
15 14 0.30
ACGTcount: A:0.04, C:0.19, G:0.01, T:0.75
Consensus pattern (13 bp):
TATTTTTCTTTTC
Found at i:72192988 original size:60 final size:60
Alignment explanation
Indices: 72192886--72193024 Score: 158
Period size: 60 Copynumber: 2.3 Consensus size: 60
72192876 CCAACTATGT
* *
72192886 TAATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACGACCCAGATTGATAC
1 TAATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGACCCAGATTAATAC
* * * *
72192946 TAATATGGGCTAGGCCCAATATA-CTCTGA-TACTGTAA-GGGGCTATGGCCCAGATTAATAT
1 TAATATGGGCTAGGCCCAATATATCTC-GACT--TGTAATAGGGCTACGACCCAGATTAATAC
*
72193006 TGATATGGGCTAAGGCCCA
1 TAATATGGGCT-AGGCCCA
72193025 GTTAACACTG
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
59 4 0.06
60 52 0.76
61 12 0.18
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (60 bp):
TAATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACGACCCAGATTAATAC
Found at i:72199705 original size:40 final size:40
Alignment explanation
Indices: 72199649--72199776 Score: 197
Period size: 40 Copynumber: 3.2 Consensus size: 40
72199639 ATATATTATA
* *
72199649 TATATCCGGGTCAAATCCCGCAGGCTTCGTCCTGGTAATG
1 TATATCCGGGTAAAATCCCGCAGGCTTCGTGCTGGTAATG
*
72199689 TATATCCGGGTAAAATCTCGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTAAAATCCCGCAGGCTTCGTGCTGGTAATG
* *
72199729 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT-AT-
1 TATATCCGGGTAAAATCCCGCAGGCTTCGTGCTGGTAATG
72199767 TATATCCGGG
1 TATATCCGGG
72199777 CTTAAAGTTC
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 10 0.12
39 2 0.02
40 70 0.85
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.30
Consensus pattern (40 bp):
TATATCCGGGTAAAATCCCGCAGGCTTCGTGCTGGTAATG
Found at i:72205457 original size:47 final size:47
Alignment explanation
Indices: 72205394--72205756 Score: 541
Period size: 47 Copynumber: 7.6 Consensus size: 47
72205384 CCCTTCGGGA
* * *
72205394 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72205441 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
72205488 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
72205535 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
72205582 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
72205631 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
72205678 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72205725 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
72205757 TCAAATATAC
Statistics
Matches: 293, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 226 0.77
49 65 0.22
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:72205654 original size:143 final size:143
Alignment explanation
Indices: 72205394--72205756 Score: 554
Period size: 143 Copynumber: 2.6 Consensus size: 143
72205384 CCCTTCGGGA
** * * *
72205394 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
1 CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
* *
72205457 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACA
* *
72205522 TTGGCCATTTGGC
131 TCGGCCATTAGGC
72205535 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACACATACACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
72205599 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCA
65 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-TGTTCACATTCATCA
*
72205663 CATCGGCTATTAGGC
129 CATCGGCCATTAGGC
* * * *
72205678 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
72205743 ACTTTCACATTCAT
66 ACTTTCACATTCAT
72205757 TCAAATATAC
Statistics
Matches: 203, Mismatches: 14, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
140 1 0.00
141 48 0.24
143 152 0.75
144 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (143 bp):
CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:72208758 original size:24 final size:24
Alignment explanation
Indices: 72208722--72208876 Score: 274
Period size: 24 Copynumber: 6.4 Consensus size: 24
72208712 TTGGAGGCCT
*
72208722 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
72208747 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
72208771 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
72208795 AGCCCTTTTTAATAACTGGGGCATA
1 AGCCC-TTTTAATAACTGGGGCATA
*
72208820 AGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
72208844 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
72208868 AGCCCTTTT
1 AGCCCTTTT
72208877 GCACTTCCTC
Statistics
Matches: 126, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
24 98 0.78
25 28 0.22
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:72208810 original size:73 final size:73
Alignment explanation
Indices: 72208728--72208876 Score: 280
Period size: 73 Copynumber: 2.0 Consensus size: 73
72208718 GCCTAGCCTC
*
72208728 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCA
1 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCA
72208793 TAAGCCCT
66 TAAGCCCT
*
72208801 TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCA
1 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCA
72208866 TAAGCCCT
66 TAAGCCCT
72208874 TTT
1 TTT
72208877 GCACTTCCTC
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (73 bp):
TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCA
TAAGCCCT
Found at i:72208951 original size:20 final size:20
Alignment explanation
Indices: 72208926--72208992 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
72208916 TTATGAATAC
72208926 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
72208946 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
72208966 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
72208986 ACCATGT
1 ATCATGT
72208993 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:72208957 original size:11 final size:11
Alignment explanation
Indices: 72208926--72208981 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
72208916 TTATGAATAC
72208926 ATCATGTGCAT
1 ATCATGTGCAT
*
72208937 ATCA--TACAT
1 ATCATGTGCAT
72208946 ATCATGTGCAT
1 ATCATGTGCAT
*
72208957 ATCA--TACAT
1 ATCATGTGCAT
*
72208966 GTCATGTGCAT
1 ATCATGTGCAT
72208977 ATCAT
1 ATCAT
72208982 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:72211147 original size:15 final size:15
Alignment explanation
Indices: 72211114--72211157 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
72211104 TTTTTCCTAT
* *
72211114 ATAATAATAATTATA
1 ATAATAATAATTTTC
72211129 ATAATAATAATTTTC
1 ATAATAATAATTTTC
72211144 ATAA-AA-AATTTTC
1 ATAATAATAATTTTC
72211157 A
1 A
72211158 AACATACTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 8 0.30
14 2 0.07
15 17 0.63
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAATAATAATTTTC
Found at i:72211208 original size:19 final size:18
Alignment explanation
Indices: 72211171--72211214 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
72211161 ATACTTACAG
72211171 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
72211188 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
72211207 TACTAATT
1 TAATAATT
72211215 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:72214393 original size:11 final size:11
Alignment explanation
Indices: 72214377--72214402 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
72214367 CGAAGCCCAC
72214377 ATCACAATAAT
1 ATCACAATAAT
72214388 ATCACAATAAT
1 ATCACAATAAT
72214399 ATCA
1 ATCA
72214403 TATGTGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:72219766 original size:27 final size:27
Alignment explanation
Indices: 72219736--72220023 Score: 226
Period size: 27 Copynumber: 10.4 Consensus size: 27
72219726 TAATAAAGAG
* *
72219736 AAATTACTAAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
72219763 AAATTACCGAAATACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
72219790 AAATTACAGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
72219817 AAATTACCGAAATACCC-CCATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
72219843 AAATTA-TCGAAATACCCTTGATTT-TG
1 AAATTACT-GAAATACCCTCGATTTGTA
* * * *
72219869 AAATTATTGAAATACCCCCGATTTTTG
1 AAATTACTGAAATACCCTCGATTTGTA
** *
72219896 AAATTACCAAAATACCCTCAATTTGTAA
1 AAATTACTGAAATACCCTCGATTTGT-A
* * *
72219924 ATAATTTGTAAAATTACCGAAATACCCTCGA-TTGTG
1 A-AA--T-T--ACTGA----AATACCCTCGATTTGTA
72219960 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
72219987 AAATTACTGAAATACCC-CTAATTTGTG
1 AAATTACTGAAATACCCTC-GATTTGTA
72220014 AAATTACTGA
1 AAATTACTGA
72220024 TGTGATCCAG
Statistics
Matches: 212, Mismatches: 32, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
26 56 0.26
27 127 0.60
28 1 0.00
29 2 0.01
30 3 0.01
31 1 0.00
32 2 0.01
33 1 0.00
34 2 0.01
35 2 0.01
36 1 0.00
37 4 0.02
38 10 0.05
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:72219900 original size:53 final size:53
Alignment explanation
Indices: 72219736--72220020 Score: 261
Period size: 53 Copynumber: 5.1 Consensus size: 53
72219726 TAATAAAGAG
*
72219736 AAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAATACCCCCGATTTGTA
1 AAATTAC-GAAATACCCTCAATTTGTAAAATTACCGAAATACCCCCGATTTGTA
72219790 AAATTACAGAAATACCCTCAATTTGTAAAATTACCGAAATACCCCC-ATTTGTA
1 AAATTAC-GAAATACCCTCAATTTGTAAAATTACCGAAATACCCCCGATTTGTA
** * ** * *
72219843 AAATTATCGAAATACCCTTGATTT-TGAAATTATTGAAATACCCCCGATTTTTG
1 AAATTA-CGAAATACCCTCAATTTGTAAAATTACCGAAATACCCCCGATTTGTA
* * *
72219896 AAATTACCAAAATACCCTCAATTTGTAAATAATTTGTAAAATTACCGAAATACCCTCGA-TTGTG
1 AAATTA-CGAAATACCCTC-----------AATTTGTAAAATTACCGAAATACCCCCGATTTGTA
* * ** *
72219960 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCCTAATTTGTG
1 AAATTAC-GAAATACCCTCAATTTGTAAAATTACCGAAATACCCCCGATTTGTA
72220014 AAATTAC
1 AAATTAC
72220021 TGATGTGATC
Statistics
Matches: 191, Mismatches: 24, Indels: 32
0.77 0.10 0.13
Matches are distributed among these distances:
52 18 0.09
53 72 0.38
54 57 0.30
63 1 0.01
64 24 0.13
65 19 0.10
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (53 bp):
AAATTACGAAATACCCTCAATTTGTAAAATTACCGAAATACCCCCGATTTGTA
Found at i:72219946 original size:91 final size:92
Alignment explanation
Indices: 72219836--72220017 Score: 260
Period size: 91 Copynumber: 2.0 Consensus size: 92
72219826 AAATACCCCC
* * * * * *
72219836 ATTTGTAAAATTATCGAAATACCCTTGATTTTGAAATTATTGAAATACCCCCGATTTTTGAAATT
1 ATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCCCGATTTGTAAAATT
72219901 ACCAAAATA-CCCTCAATTTGT-AAATA
66 ACCAAAATACCCCT-AATTTGTGAAATA
*
72219927 ATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCTCGATTTGTAAAATT
1 ATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCCCGATTTGTAAAATT
**
72219992 ACTGAAATACCCCTAATTTGTGAAAT
66 ACCAAAATACCCCTAATTTGTGAAAT
72220018 TACTGATGTG
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
91 72 0.90
92 8 0.10
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (92 bp):
ATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCCCGATTTGTAAAATT
ACCAAAATACCCCTAATTTGTGAAATA
Found at i:72221348 original size:10 final size:10
Alignment explanation
Indices: 72221330--72221380 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
72221320 AAATGAAAAA
*
72221330 GAAATGAGCT
1 GAAACGAGCT
72221340 GAAACGAGCT
1 GAAACGAGCT
*
72221350 AAAATCGAGCT
1 GAAA-CGAGCT
*
72221361 TAAACGAGCT
1 GAAACGAGCT
*
72221371 GAAAAGAGCT
1 GAAACGAGCT
72221381 CAAGTGAGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
10 26 0.74
11 9 0.26
ACGTcount: A:0.43, C:0.16, G:0.25, T:0.16
Consensus pattern (10 bp):
GAAACGAGCT
Found at i:72221359 original size:21 final size:21
Alignment explanation
Indices: 72221331--72221380 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
72221321 AATGAAAAAG
72221331 AAATGAGCTGAAACGAGCT-A
1 AAATGAGCTGAAACGAGCTGA
*
72221351 AAATCGAGCTTAAACGAGCTGA
1 AAAT-GAGCTGAAACGAGCTGA
72221373 AAA-GAGCT
1 AAATGAGCT
72221381 CAAGTGAGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 9 0.33
21 14 0.52
22 4 0.15
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (21 bp):
AAATGAGCTGAAACGAGCTGA
Found at i:72221679 original size:27 final size:27
Alignment explanation
Indices: 72221641--72221765 Score: 178
Period size: 27 Copynumber: 4.6 Consensus size: 27
72221631 TGCTTACATC
* *
72221641 AATTATCGAAACACCCTCAATTTGTAA
1 AATTACCGAAACACCCTCGATTTGTAA
* *
72221668 AATTACCGAAACACCTTTGATTTGTAA
1 AATTACCGAAACACCCTCGATTTGTAA
* *
72221695 AATTACTGAAATACCCTCGATTTGTAA
1 AATTACCGAAACACCCTCGATTTGTAA
*
72221722 AATTACCTAAACACCCTCGATTTGTAA
1 AATTACCGAAACACCCTCGATTTGTAA
*
72221749 AATTACCGAAATACCCT
1 AATTACCGAAACACCCT
72221766 TGTAGTGTAA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCGAAACACCCTCGATTTGTAA
Found at i:72221774 original size:27 final size:27
Alignment explanation
Indices: 72221641--72221791 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
72221631 TGCTTACATC
* * **
72221641 AATTATCGAAACACCCTCAATTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* *
72221668 AATTACCGAAACACCTTTGATTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* *
72221695 AATTACTGAAATACCCTCGATTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
72221722 AATTACCTAAACACCCTCGATTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
*
72221749 AATTACCGAAATACCCTTG-TAGTGTAA
1 AATTACCGAAATACCCTTGAT-TTGTAA
* *
72221776 AATGACCGACATACCC
1 AATTACCGAAATACCC
72221792 CTATAGGGTA
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 105 0.99
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.29
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGATTTGTAA
Found at i:72221802 original size:27 final size:27
Alignment explanation
Indices: 72221745--72221808 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
72221735 CCCTCGATTT
* * * *
72221745 GTAAAATTACCGAAATACCCTTGTAGT
1 GTAAAATGACCGAAATACCCCTATAGG
*
72221772 GTAAAATGACCGACATACCCCTATAGG
1 GTAAAATGACCGAAATACCCCTATAGG
72221799 GTAAAATGAC
1 GTAAAATGAC
72221809 TGTTTTGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.23
Consensus pattern (27 bp):
GTAAAATGACCGAAATACCCCTATAGG
Found at i:72221803 original size:81 final size:81
Alignment explanation
Indices: 72221649--72221805 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 81
72221639 TCAATTATCG
* * * *
72221649 AAACACCCTCAATTTGTAAAATTACCGAAACACCTTTGATTTGTAAAATTACTGAAATACCCTCG
1 AAACACCCTCAATTTGTAAAATTACCGAAACACCCTTGATGTGTAAAATGACCGAAATACCCTCG
**
72221714 ATTTGTAAAATTACCT
66 ATGGGTAAAATTACCT
* * *
72221730 AAACACCCTCGATTTGTAAAATTACCGAAATACCCTTG-TAGTGTAAAATGACCGACATACCC-C
1 AAACACCCTCAATTTGTAAAATTACCGAAACACCCTTGAT-GTGTAAAATGACCGAAATACCCTC
*
72221793 TATAGGGTAAAAT
65 GAT-GGGTAAAAT
72221806 GACTGTTTTG
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 4 0.06
81 60 0.94
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (81 bp):
AAACACCCTCAATTTGTAAAATTACCGAAACACCCTTGATGTGTAAAATGACCGAAATACCCTCG
ATGGGTAAAATTACCT
Found at i:72229501 original size:29 final size:28
Alignment explanation
Indices: 72229438--72229517 Score: 106
Period size: 29 Copynumber: 2.8 Consensus size: 28
72229428 CATACATGCT
* *
72229438 TATGGCCCACTAGGCCCAATCTCATTTA
1 TATGGCCCACTAGGCCCAATCACATCTA
*
72229466 TGTGGCCCACTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
* *
72229495 TATGGCCTATTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
72229518 TTTTACAGTC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 22 0.49
29 23 0.51
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:72229787 original size:16 final size:16
Alignment explanation
Indices: 72229737--72229779 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
72229727 GTAGCCAAAC
*
72229737 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGACA
*
72229753 TTTTAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
72229769 TTTCAGCTTTT
1 TTTCAGCTTTT
72229780 TGAAATTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:72231785 original size:40 final size:40
Alignment explanation
Indices: 72231704--72231886 Score: 262
Period size: 40 Copynumber: 4.6 Consensus size: 40
72231694 TATTCGGATG
*
72231704 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
72231745 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
72231785 ATATCCGGGCTAAGTCCCAAAGGCATTTTTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
72231825 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
72231865 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
72231887 TACTTTGGTT
Statistics
Matches: 129, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 14 0.11
40 89 0.69
41 26 0.20
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:72236021 original size:47 final size:47
Alignment explanation
Indices: 72235964--72236267 Score: 437
Period size: 47 Copynumber: 6.4 Consensus size: 47
72235954 ATTGATGTAC
* * *
72235964 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
72236011 AAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
72236060 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
72236107 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
72236154 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
72236201 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
72236248 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
72236268 TCCCGAAGGG
Statistics
Matches: 238, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
47 192 0.81
49 46 0.19
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:72240726 original size:13 final size:13
Alignment explanation
Indices: 72240708--72240746 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
72240698 ATATTATAAT
*
72240708 TATTTTGTGTTAA
1 TATTTTATGTTAA
*
72240721 TATTTTATGCTAA
1 TATTTTATGTTAA
72240734 TAATTTTATGTTA
1 T-ATTTTATGTTA
72240747 CAAAATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:72242212 original size:40 final size:40
Alignment explanation
Indices: 72242135--72242358 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
72242125 TATTCGGATG
* *
72242135 ATATCCGGGCTAAGACCTGAAGGCACTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* * *
72242176 ATATCTGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGACG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
72242216 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* *
72242257 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
72242297 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGATTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* *
72242337 ATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
72242359 TACTTGGGTT
Statistics
Matches: 163, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 13 0.08
40 90 0.55
41 60 0.37
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:72242271 original size:81 final size:80
Alignment explanation
Indices: 72242134--72242358 Score: 310
Period size: 81 Copynumber: 2.8 Consensus size: 80
72242124 TTATTCGGAT
* *
72242134 GATATCCGGGCTAAGACCTGAAGGCACTTTGTGCTAGTGACTATATCTGGGTTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGG
*
72242199 CATTTGTGCTAGTGAC
65 CATTTGTGCGAGTGAC
*
72242215 GATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGG
*
72242280 CATTTGTGCGAGTTAC
65 CATTTGTGCGAGTGAC
* * * * * *
72242296 TATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGATTTG-CTATATCC-GGTTAAATCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGTTAAGTCCCGAAGG
72242359 TACTTGGGTT
Statistics
Matches: 130, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
79 14 0.11
80 16 0.12
81 100 0.77
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (80 bp):
GATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGGC
ATTTGTGCGAGTGAC
Found at i:72248261 original size:31 final size:31
Alignment explanation
Indices: 72248226--72248287 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
72248216 TAGATTAAGG
72248226 TATGTTCAATGTTGCTTTTGGAGGTTTACAC
1 TATGTTCAATGTTGCTTTTGGAGGTTTACAC
72248257 TATGTTCAATGTTGCTTTTGGAGGTTTACAC
1 TATGTTCAATGTTGCTTTTGGAGGTTTACAC
72248288 ATCCTTTGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.19, C:0.13, G:0.23, T:0.45
Consensus pattern (31 bp):
TATGTTCAATGTTGCTTTTGGAGGTTTACAC
Found at i:72248711 original size:48 final size:48
Alignment explanation
Indices: 72248640--72249195 Score: 959
Period size: 48 Copynumber: 11.6 Consensus size: 48
72248630 AGTGGGAAGA
* *
72248640 AATGGCTAATGTGAAATACGTATGAGATATGTATTTGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
72248688 AATGGCTAATGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
72248736 AATGGCTAATGTGAAATATGTATGAGATATGTACATGTGGTAAAGCCA
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
72248784 AATGGCTAATGTGAAATACGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
72248832 AATGGCTAATGTGAAATACGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
72248880 AATGGCTAATGTGAAATACGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* * * *
72248928 AATGGCTAATGTGGAATAGGTAAGAGATAGGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
72248976 AATGGCTAATGTGAAATAGGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
72249024 AATGGCTAATGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
72249072 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
72249120 AATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
72249168 AATGGCTAGTGTGAAATATGTAGGAGAT
1 AATGGCTAATGTGAAATATGTATGAGAT
72249196 GTGTGTATAT
Statistics
Matches: 485, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 485 1.00
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.29
Consensus pattern (48 bp):
AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
Found at i:72248988 original size:22 final size:22
Alignment explanation
Indices: 72248914--72248988 Score: 64
Period size: 22 Copynumber: 3.2 Consensus size: 22
72248904 AGATATGTAT
72248914 ATGTGGTAAAGCCGAATGGCTA
1 ATGTGGTAAAGCCGAATGGCTA
**
72248936 ATGTGG-AATAGGTAAGAGATAGG-TA
1 ATGTGGTAA-A-G-CCGA-AT-GGCTA
72248961 TATGTGGTAAAGCCGAATGGCTA
1 -ATGTGGTAAAGCCGAATGGCTA
72248984 ATGTG
1 ATGTG
72248989 AAATAGGTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 16
0.67 0.07 0.26
Matches are distributed among these distances:
21 2 0.05
22 14 0.34
23 5 0.12
24 4 0.10
25 5 0.12
26 9 0.22
27 2 0.05
ACGTcount: A:0.33, C:0.08, G:0.33, T:0.25
Consensus pattern (22 bp):
ATGTGGTAAAGCCGAATGGCTA
Found at i:72252331 original size:22 final size:22
Alignment explanation
Indices: 72252256--72252331 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
72252246 ACATGCATAT
*
72252256 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
72252278 ATGTGATAAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
72252302 CATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
72252325 ATGTGAT
1 ATGTGAT
72252332 GAACGTGGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:72252368 original size:47 final size:47
Alignment explanation
Indices: 72252043--72252334 Score: 458
Period size: 47 Copynumber: 6.2 Consensus size: 47
72252033 TTAGGATTTT
* * * * *
72252043 ATGTGATGGATGTGAACATGCCTTTGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
72252090 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
72252137 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
72252184 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
72252231 ATGTGACGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
72252278 ATGTGATAAATGTGAACATGCATACATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72252325 ATGTGATGAA
1 ATGTGATGAA
72252335 CGTGGATGTG
Statistics
Matches: 226, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 226 1.00
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:72252368 original size:141 final size:141
Alignment explanation
Indices: 72252043--72252368 Score: 413
Period size: 141 Copynumber: 2.3 Consensus size: 141
72252033 TTAGGATTTT
* * * * * * *
72252043 ATGTGATGGATGTGAACATGCCT-T-TGTGTGATAAGACCGAATGGCCAATGTGATGAATGTGAA
1 ATGTGATGAACGTGAACATGCATATATGTGAGA-AAG-CCAAATGGCCAATGTGACGAATATGAA
* * * *
72252106 CATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAA
64 CATGCATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATACATGTGATAA
*
72252171 GGCCGAATGACCA
129 GGCAGAATGACCA
* * * * *
72252184 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGACGAATATGAACA
1 ATGTGATGAACGTGAACATGCATATATGTGAGAAAGCCAAATGGCCAATGTGACGAATATGAACA
72252249 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATACATGTGATAAGG
66 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATACATGTGATAAGG
*
72252314 CAGAATGGCCA
131 CAGAATGACCA
* ** * *
72252325 ATGTGATGAACGTGGATGTGTATATATGTGGGAAAGCCAAATGG
1 ATGTGATGAACGTGAACATGCATATATGTGAGAAAGCCAAATGG
72252369 TTAATGCGAA
Statistics
Matches: 160, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
141 152 0.95
142 3 0.02
143 5 0.03
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (141 bp):
ATGTGATGAACGTGAACATGCATATATGTGAGAAAGCCAAATGGCCAATGTGACGAATATGAACA
TGCATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATACATGTGATAAGG
CAGAATGACCA
Found at i:72252401 original size:46 final size:46
Alignment explanation
Indices: 72252348--72252438 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
72252338 GGATGTGTAT
* **
72252348 ATATGTGGGAAAGCCAAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
72252394 ATATGTGGTAAAGCCAAATGGCTAATGTGAGACATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
72252439 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:72254858 original size:40 final size:40
Alignment explanation
Indices: 72254805--72255003 Score: 326
Period size: 40 Copynumber: 5.0 Consensus size: 40
72254795 TTGAGAGTTA
* *
72254805 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
72254845 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCCGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
72254885 TATGTCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
72254925 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
72254965 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
72255004 ATGTGTATTC
Statistics
Matches: 148, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 148 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:72255217 original size:25 final size:25
Alignment explanation
Indices: 72255167--72255217 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
72255157 TGTGTAACAA
* *
72255167 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
72255192 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
72255217 C
1 C
72255218 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:72257053 original size:48 final size:48
Alignment explanation
Indices: 72256977--72257772 Score: 1385
Period size: 48 Copynumber: 16.6 Consensus size: 48
72256967 AGTGGGAAGA
* *
72256977 AATGGCTAATGTGAAATACGTATAAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
72257025 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
72257073 AATGGCTAATGTGAAATATGTATGAGATAGGTACATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
72257121 AATGGCTAATGTGAAATATGTATGAGATATGTACATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
72257169 AATGGCTAATGTGAAATATGTATGAGATATGTACATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
72257217 AATGGCTAATGTGAAATACGTATGAGATATGTTTATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
72257265 AATGGCTAATGTGAAATACGTATGAGATATGTTTATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* * *
72257313 AATGGCTAATGTGAAATACGTATGAGATAGGCATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
72257361 AATGGCTAATGTGAAATATGTATGAGATAGGCATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
72257409 AATGGCTAATGTGAAATATGTATGAGATAGGTATATGTGGTAAAGTCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
72257457 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
72257505 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
72257553 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
72257601 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* **
72257649 AATGGCCAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGTTG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
72257697 AATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* *
72257745 AATGGCTAGTGTGAAATATGTAGGAGAT
1 AATGGCTAATGTGAAATATGTATGAGAT
72257773 GTGTGTATAT
Statistics
Matches: 722, Mismatches: 26, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 722 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
Found at i:72257350 original size:26 final size:25
Alignment explanation
Indices: 72257321--72257399 Score: 60
Period size: 26 Copynumber: 3.2 Consensus size: 25
72257311 CGAATGGCTA
72257321 ATGTGAAATACGTATGAGATAGGCAT
1 ATGTGAAATA-GTATGAGATAGGCAT
* **
72257347 ATGTGGTAA-AG-CCGA-AT-GGC-T
1 ATGT-GAAATAGTATGAGATAGGCAT
72257368 AATGTGAAATATGTATGAGATAGGCAT
1 -ATGTGAAATA-GTATGAGATAGGCAT
72257395 ATGTG
1 ATGTG
72257400 GTAAAGCCGA
Statistics
Matches: 39, Mismatches: 6, Indels: 16
0.64 0.10 0.26
Matches are distributed among these distances:
21 4 0.10
22 8 0.21
23 3 0.08
24 4 0.10
25 3 0.08
26 13 0.33
27 4 0.10
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (25 bp):
ATGTGAAATAGTATGAGATAGGCAT
Found at i:72257963 original size:37 final size:37
Alignment explanation
Indices: 72257913--72258015 Score: 181
Period size: 37 Copynumber: 2.8 Consensus size: 37
72257903 GGAAATATAT
72257913 TCCGGGTAAGACCCGAAGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGAAGACTACGTGTGGAGATTATG
*
72257950 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGAAGACTACGTGTGGAGATTATG
72257987 TCCGGGTAAGACCCGATA-ACTACGTGTGG
1 TCCGGGTAAGACCCGA-AGACTACGTGTGG
72258016 GGACTATTCG
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.22
Consensus pattern (37 bp):
TCCGGGTAAGACCCGAAGACTACGTGTGGAGATTATG
Found at i:72262903 original size:29 final size:29
Alignment explanation
Indices: 72262840--72262966 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
72262830 ATAGTAAGTC
*
72262840 CGCACACTTAGTG-TTATATAAT-AAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
72262867 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
72262896 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
72262924 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
72262953 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72262967 CAATCTCATG
Statistics
Matches: 87, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
27 13 0.15
28 34 0.39
29 38 0.44
30 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:72262916 original size:28 final size:28
Alignment explanation
Indices: 72262840--72262966 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
72262830 ATAGTAAGTC
*
72262840 CGCACACTTAGTGTTATATAAT-AAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
72262867 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
72262896 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
72262924 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72262953 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72262967 CAATCTCATG
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
27 13 0.15
28 38 0.43
29 37 0.42
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72262932 original size:57 final size:56
Alignment explanation
Indices: 72262839--72262966 Score: 177
Period size: 57 Copynumber: 2.3 Consensus size: 56
72262829 TATAGTAAGT
*
72262839 CCGCACACTTAGTGTTATATAATAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
72262895 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAAT-AAACTCGCACACTTAGTGCTATACAAATCAAAC
72262952 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
72262967 CAATCTCATG
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
56 21 0.33
57 39 0.62
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (56 bp):
CCGCACACTTAGTGCTATATAATAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:72274177 original size:49 final size:49
Alignment explanation
Indices: 72274121--72274294 Score: 258
Period size: 49 Copynumber: 3.5 Consensus size: 49
72274111 CTAGTACGCA
*
72274121 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTCCACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * *** * *
72274170 TAGTAGCCTGCACTTAGTACTACGCATGTGACCTAACCGTCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
*
72274220 TAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
72274269 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
72274295 CGTGACCTCA
Statistics
Matches: 108, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
49 68 0.63
50 40 0.37
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:72274300 original size:99 final size:99
Alignment explanation
Indices: 72274121--72274302 Score: 328
Period size: 99 Copynumber: 1.8 Consensus size: 99
72274111 CTAGTACGCA
* *
72274121 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTCCACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
* *
72274186 GTACTACGCATGTGACCTAACCGTCTGATACACG
66 GTACTACACACGTGACCTAACCGTCTGATACACG
72274220 TAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
72274285 GTACTACACACGTGACCT
66 GTACTACACACGTGACCT
72274303 CACAATAGAT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 79 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCGTCTGATACACG
Found at i:72277966 original size:46 final size:45
Alignment explanation
Indices: 72277894--72278069 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
72277884 TGTAACCCGC
* * *
72277894 CCATAAGTGAACTCCGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACGTT-GCAT
* * *
72277940 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GAC--GTTGCAT
* * * *
72277990 -C-TCA-CGAACTCGGATTCAACTCAACGAGTTCAGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGAC-GTTGCAT
72278033 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGA
72278070 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 59 0.55
47 25 0.23
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACGTTGCAT
Found at i:72278061 original size:93 final size:93
Alignment explanation
Indices: 72277902--72278073 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
72277892 GCCCATAAGT
* * *
72277902 GAACTCCGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCCGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
72277967 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * * *
72277995 GAACTCGGATTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCCGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72278060 CGAGTTCAGATGCC
66 CGAGTTCAGATGCC
72278074 CAAATATCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCCGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:72278088 original size:46 final size:46
Alignment explanation
Indices: 72277945--72278088 Score: 118
Period size: 46 Copynumber: 3.1 Consensus size: 46
72277935 CGCATCCATG
* * * *
72277945 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCA--TATATCCC
* * * *
72277993 A-CGAACTCGGATTCAACTCAACGAGTTCAGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCATAT--ATCC--C
*
72278038 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCATATATCCC
72278084 AGTGA
1 AGTGA
72278089 CATGTCACTC
Statistics
Matches: 74, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 1 0.01
46 33 0.45
47 27 0.36
48 5 0.07
50 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCATATATCCC
Found at i:72283079 original size:40 final size:40
Alignment explanation
Indices: 72283018--72283200 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
72283008 CGGATGATAA
* *
72283018 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* * * *
72283058 CCGAGATAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72283098 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72283138 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72283178 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
72283201 CGAGTAAGTA
Statistics
Matches: 128, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 128 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72283216 original size:80 final size:79
Alignment explanation
Indices: 72283018--72283235 Score: 244
Period size: 80 Copynumber: 2.7 Consensus size: 79
72283008 CGGATGATAA
* * * *
72283018 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAGT-TCCGAGATAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCAAGCT-ACTA-TATCCG-GCTAAGTCCCGAAGGCATT
* *
72283081 TGTGCGAGTTATTACAT
63 GGTGCGAGTTACTACAT
* * *
72283098 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCAAGCTACTATATCC-GGCTAAGTCCCGAAGGCATTGG
*
72283163 TGCGAGTTACTATAT
65 TGCGAGTTACTACAT
* * * *
72283178 CCGGGCTATGTCCCGAAGGCATTCGAGTAAG-TAGCTATATCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCAAGCTA-CTATATCCGGCTAAGTCCCGAAGG
72283236 TACTTGGCTT
Statistics
Matches: 122, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
79 17 0.14
80 103 0.84
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAGCAAGCTACTATATCCGGCTAAGTCCCGAAGGCATTGGT
GCGAGTTACTACAT
Found at i:72286302 original size:24 final size:24
Alignment explanation
Indices: 72286275--72286323 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
72286265 TGACTAACAT
72286275 GTTTGATTGGATGCATGTGTTTAG
1 GTTTGATTGGATGCATGTGTTTAG
72286299 GTTTGATTGGATGCATGTGTTTAG
1 GTTTGATTGGATGCATGTGTTTAG
72286323 G
1 G
72286324 CAATTTAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.04, G:0.35, T:0.45
Consensus pattern (24 bp):
GTTTGATTGGATGCATGTGTTTAG
Found at i:72286911 original size:47 final size:47
Alignment explanation
Indices: 72286857--72286982 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 47
72286847 TAGTTCAAGT
* * *
72286857 ATTTAATTTGTCTTTAGTTTATTTAATATGTTCTAATTGGTTCTGAA
1 ATTTAATTTGTCTTAAGTTTATTTAATATGTTCTAATTAGTTCAGAA
* * **
72286904 ATTTAATTTGTCTAAAGTTTATCTAATATGTTCTAATTAGTTCAGCT
1 ATTTAATTTGTCTTAAGTTTATTTAATATGTTCTAATTAGTTCAGAA
* * *
72286951 ATTTAATATGTCCTAAGTTAATTTAATATGTT
1 ATTTAATTTGTCTTAAGTTTATTTAATATGTT
72286983 TTAGCTAGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.29, C:0.08, G:0.11, T:0.52
Consensus pattern (47 bp):
ATTTAATTTGTCTTAAGTTTATTTAATATGTTCTAATTAGTTCAGAA
Found at i:72286997 original size:47 final size:48
Alignment explanation
Indices: 72286904--72287009 Score: 126
Period size: 47 Copynumber: 2.2 Consensus size: 48
72286894 TGGTTCTGAA
* * *
72286904 ATTTAATTTGT-CTAAAGTTTATCTAATATGTTCTAATTAGTTCAGCT
1 ATTTAATTTGTCCTAAAGTTAATCTAATATGTTCTAACTAGTACAGCT
* * * *
72286951 ATTTAATATGTCCT-AAGTTAATTTAATATGTTTTAGCTAGTACAGCT
1 ATTTAATTTGTCCTAAAGTTAATCTAATATGTTCTAACTAGTACAGCT
*
72286998 ACTTAATTTGTC
1 ATTTAATTTGTC
72287010 TTAGCTTATT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
47 47 0.96
48 2 0.04
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.47
Consensus pattern (48 bp):
ATTTAATTTGTCCTAAAGTTAATCTAATATGTTCTAACTAGTACAGCT
Found at i:72287040 original size:25 final size:25
Alignment explanation
Indices: 72287012--72287060 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
72287002 AATTTGTCTT
*
72287012 AGCTTATTACAACTTAATTAGCTGA
1 AGCTCATTACAACTTAATTAGCTGA
72287037 AGCTCATTACAACTTAATTAGCTG
1 AGCTCATTACAACTTAATTAGCTG
72287061 GTTGAGTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (25 bp):
AGCTCATTACAACTTAATTAGCTGA
Found at i:72287107 original size:19 final size:18
Alignment explanation
Indices: 72287067--72287109 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
72287057 GCTGGTTGAG
72287067 TTAATTTTCTAGCTGAAT
1 TTAATTTTCTAGCTGAAT
72287085 TTAAGTTTTCCTAGCTGAA-
1 TTAA-TTTT-CTAGCTGAAT
72287104 TTAATT
1 TTAATT
72287110 GTGTTTTTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.26
19 8 0.35
20 9 0.39
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.49
Consensus pattern (18 bp):
TTAATTTTCTAGCTGAAT
Found at i:72289693 original size:23 final size:23
Alignment explanation
Indices: 72289667--72289710 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
72289657 TATAATCATA
72289667 TCAAAATCATAACAAAACATAAG
1 TCAAAATCATAACAAAACATAAG
* *
72289690 TCAAAGTCATACCAAAACATA
1 TCAAAATCATAACAAAACATA
72289711 TGTTACATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.57, C:0.20, G:0.05, T:0.18
Consensus pattern (23 bp):
TCAAAATCATAACAAAACATAAG
Found at i:72290547 original size:42 final size:42
Alignment explanation
Indices: 72290439--72290600 Score: 159
Period size: 43 Copynumber: 3.8 Consensus size: 42
72290429 AGCTCGTACA
* *
72290439 ATGCCAATGTCCCAGACATGGTCATACACGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATA-CG
* * * *
72290482 GTGCCACTATCCCAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACG
* *
72290524 ATGCCAATGTCCCAGAAATGGTCTTACATGTAAATCATAACT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAATCA-AA-TACG
* *
72290568 ATGCCAGCT-TCCCAGACGTGGT-TGTACACGAAA
1 ATGCCA-ATGTCCCAGACATGGTCT-TACACGAAA
72290601 ACACATATCG
Statistics
Matches: 98, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 26 0.27
43 44 0.45
44 26 0.27
45 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.23
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACG
Found at i:72290583 original size:86 final size:85
Alignment explanation
Indices: 72290439--72290600 Score: 206
Period size: 86 Copynumber: 1.9 Consensus size: 85
72290429 AGCTCGTACA
* *
72290439 ATGCCAATGTCCCAGACATGGTCATACACGTAATCAAATATCGGTGCCACTATCCCAGACAG-GG
1 ATGCCAATGTCCCAGAAATGGTCATACACGTAATCAAATATCGATGCCACTATCCCAGAC-GTGG
72290503 TCT-TACACGAAATCAAATACG
65 T-TGTACACGAAATCAAATACG
* * *
72290524 ATGCCAATGTCCCAGAAATGGTCTTACATGTAAATCATAA-CTCGATGCCAGCT-TCCCAGACGT
1 ATGCCAATGTCCCAGAAATGGTCATACACGT-AATCA-AATATCGATGCCA-CTATCCCAGACGT
72290587 GGTTGTACACGAAA
63 GGTTGTACACGAAA
72290601 ACACATATCG
Statistics
Matches: 67, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
85 30 0.45
86 33 0.49
87 4 0.06
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.23
Consensus pattern (85 bp):
ATGCCAATGTCCCAGAAATGGTCATACACGTAATCAAATATCGATGCCACTATCCCAGACGTGGT
TGTACACGAAATCAAATACG
Found at i:72294830 original size:20 final size:20
Alignment explanation
Indices: 72294779--72294836 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
72294769 TAGCTCGTCC
* *
72294779 AGTTCACAACCAGCTCAGCA
1 AGTTCACATCCAGCTCAACA
* ** *
72294799 AGCTCAGTTCCAACTCAACA
1 AGTTCACATCCAGCTCAACA
72294819 AGTTCACATCCAGCTCAA
1 AGTTCACATCCAGCTCAA
72294837 TTTTAGCTCA
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.34, C:0.34, G:0.12, T:0.19
Consensus pattern (20 bp):
AGTTCACATCCAGCTCAACA
Found at i:72314742 original size:43 final size:44
Alignment explanation
Indices: 72314642--72314742 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 44
72314632 CCCAGATGTA
* * **
72314642 GTCTTACGTGT-AATCAAATATCGATGCCACTGTCCCAGACAGG
1 GTCTTACGTGTAAATCAAATATCAATGCCAATAACCCAGACAGG
* *
72314685 GTCTTACATG-AAATCAAATA-CAATGCCAATAACCCAGACATG
1 GTCTTACGTGTAAATCAAATATCAATGCCAATAACCCAGACAGG
*
72314727 GTCTTACGCGTAAATC
1 GTCTTACGTGTAAATC
72314743 GTAAGTAGAT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
42 25 0.52
43 23 0.48
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (44 bp):
GTCTTACGTGTAAATCAAATATCAATGCCAATAACCCAGACAGG
Found at i:72318448 original size:27 final size:27
Alignment explanation
Indices: 72318431--72318608 Score: 133
Period size: 27 Copynumber: 6.6 Consensus size: 27
72318421 ATATTAAGTC
72318431 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
72318458 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
72318486 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *** ** *
72318513 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
72318540 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
72318567 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
72318594 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
72318609 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 104 0.79
28 27 0.21
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:72318570 original size:54 final size:54
Alignment explanation
Indices: 72318431--72318607 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
72318421 ATATTAAGTC
* * *
72318431 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAA-T
* ** * *
72318486 CGCACACTTAGTGC-TACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
72318540 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
72318594 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72318608 TGTACAATTT
Statistics
Matches: 105, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 44 0.42
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:72318597 original size:81 final size:82
Alignment explanation
Indices: 72318452--72318607 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
72318442 TGCTATATAA
* *
72318452 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
72318517 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
72318534 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
72318597 ACACTTAGTGC
65 ACACTTAGTGC
72318608 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 42 0.63
82 25 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:72320519 original size:6 final size:6
Alignment explanation
Indices: 72320510--72320578 Score: 63
Period size: 6 Copynumber: 11.7 Consensus size: 6
72320500 TAGAAAAATC
* * *
72320510 AAAAGA AAAAGA ACAAGA AAAA-A AGAAAGA GAAAGA GAAAG- -AAAGA
1 AAAAGA AAAAGA AAAAGA AAAAGA A-AAAGA AAAAGA AAAAGA AAAAGA
*
72320556 AAAAAA AAAAGA AAATAGA AAAA
1 AAAAGA AAAAGA AAA-AGA AAAA
72320579 AAGAGAGGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
4 4 0.08
5 2 0.04
6 40 0.75
7 7 0.13
ACGTcount: A:0.80, C:0.01, G:0.17, T:0.01
Consensus pattern (6 bp):
AAAAGA
Found at i:72320535 original size:20 final size:19
Alignment explanation
Indices: 72320510--72320578 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 19
72320500 TAGAAAAATC
72320510 AAAAGAAAAAGAACAAGAAA
1 AAAAGAAAAAGAA-AAGAAA
*
72320530 AAAAGAAAGAGAAAGAGAAA
1 AAAAGAAAAAGAAA-AGAAA
*
72320550 GAAAGAAAAA-AAAA-AAGA
1 AAAAGAAAAAGAAAAGAA-A
72320568 AAATAGAAAAA
1 AAA-AGAAAAA
72320579 AAGAGAGGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
17 2 0.05
18 4 0.10
19 11 0.26
20 25 0.60
ACGTcount: A:0.80, C:0.01, G:0.17, T:0.01
Consensus pattern (19 bp):
AAAAGAAAAAGAAAAGAAA
Found at i:72320575 original size:27 final size:28
Alignment explanation
Indices: 72320524--72320582 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
72320514 GAAAAAGAAC
* *
72320524 AAGAAAAAAAGAAAGAGAAAGAGAAAGA
1 AAGAAAAAAAAAAAGAGAAAGAGAAAAA
*
72320552 AAGAAAAAAAAAAAGA-AAATAGAAAAA
1 AAGAAAAAAAAAAAGAGAAAGAGAAAAA
72320579 AAGA
1 AAGA
72320583 GAGGAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 13 0.46
28 15 0.54
ACGTcount: A:0.80, C:0.00, G:0.19, T:0.02
Consensus pattern (28 bp):
AAGAAAAAAAAAAAGAGAAAGAGAAAAA
Found at i:72323733 original size:27 final size:26
Alignment explanation
Indices: 72323702--72323800 Score: 75
Period size: 27 Copynumber: 3.9 Consensus size: 26
72323692 TCTTAAGTTT
72323702 ATTTAATATGTTCTAATTAGTTTAGC
1 ATTTAATATGTTCTAATTAGTTTAGC
* *
72323728 AATTTAATTTG-TCT--TAAGTTT---
1 -ATTTAATATGTTCTAATTAGTTTAGC
* *
72323749 ATTTAATATGTTTTAATTAGTTCAGC
1 ATTTAATATGTTCTAATTAGTTTAGC
* *
72323775 TATTTAATATGTCCTAAGTTAATTTA
1 -ATTTAATATGTTCTAA-TTAGTTTA
72323801 ATATGTTTTA
Statistics
Matches: 54, Mismatches: 10, Indels: 15
0.68 0.13 0.19
Matches are distributed among these distances:
20 9 0.17
21 2 0.04
23 5 0.09
24 6 0.11
26 3 0.06
27 23 0.43
28 6 0.11
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.52
Consensus pattern (26 bp):
ATTTAATATGTTCTAATTAGTTTAGC
Found at i:72323764 original size:20 final size:20
Alignment explanation
Indices: 72323681--72323806 Score: 72
Period size: 20 Copynumber: 5.6 Consensus size: 20
72323671 TTAGTTTAAG
*
72323681 TATTTAATTTGTCTTAAGTT
1 TATTTAATATGTCTTAAGTT
*
72323701 TATTTAATATGTTCTAATTAGTT
1 TATTTAATATG-TCT--TAAGTT
*
72323724 TAGCAATTTAATTTGTCTTAAGTT
1 T----ATTTAATATGTCTTAAGTT
*
72323748 TATTTAATATGTTTTAATTAGTT
1 TATTTAATATGTCTT-A--AGTT
*
72323771 CAGCTATTTAATATGTCCTAAGTT
1 ----TATTTAATATGTCTTAAGTT
*
72323795 AATTTAATATGT
1 TATTTAATATGT
72323807 TTTAGCTAGT
Statistics
Matches: 83, Mismatches: 9, Indels: 28
0.69 0.08 0.23
Matches are distributed among these distances:
20 33 0.40
21 4 0.05
23 10 0.12
24 10 0.12
26 4 0.05
27 22 0.27
ACGTcount: A:0.30, C:0.06, G:0.10, T:0.53
Consensus pattern (20 bp):
TATTTAATATGTCTTAAGTT
Found at i:72323822 original size:47 final size:47
Alignment explanation
Indices: 72323681--72323810 Score: 206
Period size: 47 Copynumber: 2.8 Consensus size: 47
72323671 TTAGTTTAAG
* *
72323681 TATTTAATTTGTCTTAAGTTTATTTAATATGTTCTAATTAGTTTAGC
1 TATTTAATTTGTCTTAAGTTTATTTAATATGTTTTAATTAGTTCAGC
*
72323728 AATTTAATTTGTCTTAAGTTTATTTAATATGTTTTAATTAGTTCAGC
1 TATTTAATTTGTCTTAAGTTTATTTAATATGTTTTAATTAGTTCAGC
* * *
72323775 TATTTAATATGTCCTAAGTTAATTTAATATGTTTTA
1 TATTTAATTTGTCTTAAGTTTATTTAATATGTTTTA
72323811 GCTAGTACAG
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 76 1.00
ACGTcount: A:0.30, C:0.06, G:0.10, T:0.54
Consensus pattern (47 bp):
TATTTAATTTGTCTTAAGTTTATTTAATATGTTTTAATTAGTTCAGC
Found at i:72325799 original size:29 final size:29
Alignment explanation
Indices: 72325740--72325821 Score: 89
Period size: 28 Copynumber: 2.9 Consensus size: 29
72325730 TGTAAATGTA
* * *
72325740 ATTTGGGCTTAAT-GGCCATATGAATGTG
1 ATTTGGGCCTAATGGGCCATATGAAAGAG
*
72325768 ATTTGGGCCTACTGGGCCATATGAAAGAG
1 ATTTGGGCCTAATGGGCCATATGAAAGAG
* *
72325797 A-TTGGGCCTAGTGGGTCATAT-AAAG
1 ATTTGGGCCTAATGGGCCATATGAAAG
72325822 GTACGTGGAC
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 4 0.09
28 29 0.62
29 14 0.30
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.29
Consensus pattern (29 bp):
ATTTGGGCCTAATGGGCCATATGAAAGAG
Found at i:72331029 original size:46 final size:46
Alignment explanation
Indices: 72330962--72331134 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 46
72330952 TAACCCGCCT
* * *
72330962 ATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCC
* *
72331008 ATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT-C
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCC
* * * *
72331057 TTACA---AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCC
1 ATA-AGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCC
72331101 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
72331135 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 4 0.04
46 56 0.54
47 25 0.24
48 1 0.01
49 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCC
Found at i:72331077 original size:93 final size:93
Alignment explanation
Indices: 72330969--72331138 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
72330959 CCTATAAGCG
* * * *
72330969 AACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
72331034 GAGTTTGGATGCCTAGTTACATCTTACA
66 GAGTTCGGATGCCTAGTTACATCTTACA
*
72331062 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
72331127 GAGTTCGGATGC
66 GAGTTCGGATGC
72331139 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTTACA
Found at i:72331154 original size:46 final size:46
Alignment explanation
Indices: 72330968--72331154 Score: 118
Period size: 46 Copynumber: 4.0 Consensus size: 46
72330958 GCCTATAAGC
* * ** * *
72330968 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTC--GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T-AGT
* * *
72331014 GAACTCGGACTCAACTCAACGAGTTTGGATGC-CTAGTTA-CATCTTA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCTAGT
* * * * * *
72331061 AAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGTTC-G-GATGCTCAACCATCCTAGT
72331107 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
72331153 GA
1 GA
72331155 CATGTCACTT
Statistics
Matches: 107, Mismatches: 21, Indels: 26
0.69 0.14 0.17
Matches are distributed among these distances:
44 9 0.08
45 3 0.03
46 56 0.52
47 27 0.25
48 2 0.02
49 5 0.05
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
Found at i:72335966 original size:28 final size:28
Alignment explanation
Indices: 72335897--72335964 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
72335887 AGCATGATTG
* *
72335897 TAAATGTGATTTGGGCCTAATGGCTATA
1 TAAATGTGATTTGGGCCTAATGGCCACA
*
72335925 TGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGATTTGGGCCTAAT-GGCCACA
*
72335954 TAAATTTGATT
1 TAAATGTGATT
72335965 GGCTATATGA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 20 0.59
29 14 0.41
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (28 bp):
TAAATGTGATTTGGGCCTAATGGCCACA
Found at i:72337406 original size:20 final size:20
Alignment explanation
Indices: 72337368--72337407 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
72337358 AAACACAAGC
* *
72337368 TGTCCATTTAGCTAACTTAT
1 TGTCCATTCAACTAACTTAT
*
72337388 TGTCCATTCAACTAGCTTAT
1 TGTCCATTCAACTAACTTAT
72337408 GTATTGAGCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (20 bp):
TGTCCATTCAACTAACTTAT
Found at i:72340593 original size:46 final size:46
Alignment explanation
Indices: 72340543--72340717 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
72340533 TGATTGAGCA
72340543 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72340589 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
72340633 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
72340681 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72340718 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 9 0.08
46 74 0.68
47 7 0.06
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72340697 original size:92 final size:93
Alignment explanation
Indices: 72340540--72340710 Score: 301
Period size: 92 Copynumber: 1.8 Consensus size: 93
72340530 GGATGATTGA
*
72340540 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
72340605 TGAGT-CGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
72340632 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
72340696 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
72340711 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
91 2 0.03
92 65 0.87
93 8 0.11
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72342707 original size:21 final size:21
Alignment explanation
Indices: 72342667--72342707 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
72342657 TATATTAGTG
*
72342667 AAAGATTTATTGATCAGAAGT
1 AAAGATTTATTGAGCAGAAGT
* *
72342688 AAAGATTTCTTGAGCTGAAG
1 AAAGATTTATTGAGCAGAAG
72342708 CAAGGTAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (21 bp):
AAAGATTTATTGAGCAGAAGT
Found at i:72348108 original size:46 final size:46
Alignment explanation
Indices: 72348058--72348233 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
72348048 TGATTGAGCA
72348058 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72348104 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
72348149 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
72348197 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72348234 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72348214 original size:93 final size:93
Alignment explanation
Indices: 72348055--72348226 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
72348045 GGATGATTGA
*
72348055 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
72348120 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
72348148 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
72348212 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
72348227 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72352167 original size:34 final size:34
Alignment explanation
Indices: 72352123--72352190 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
72352113 AAGAAGTATG
72352123 ACAAGCAATTCATAGTTGATGTACTCATACTTAA
1 ACAAGCAATTCATAGTTGATGTACTCATACTTAA
*
72352157 ACAAGTAATTCATAGTTGATGTACTCATACTTAA
1 ACAAGCAATTCATAGTTGATGTACTCATACTTAA
72352191 CTAACATGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (34 bp):
ACAAGCAATTCATAGTTGATGTACTCATACTTAA
Found at i:72353018 original size:12 final size:12
Alignment explanation
Indices: 72353001--72353031 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
72352991 TCAGTAGTTT
72353001 CACACGGCCTAG
1 CACACGGCCTAG
72353013 CACACGGCCTAG
1 CACACGGCCTAG
*
72353025 AACACGG
1 CACACGG
72353032 GTGTGTGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.39, G:0.26, T:0.06
Consensus pattern (12 bp):
CACACGGCCTAG
Found at i:72353773 original size:27 final size:27
Alignment explanation
Indices: 72353731--72353785 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
72353721 TTTAGGCATG
* *
72353731 TTAGTTTGATTTTGATTGAGGTGCCTA
1 TTAGTTTGATTGTGATTGAGGTACCTA
72353758 TTAGTTTGATTGTGATTGAGGTACCTA
1 TTAGTTTGATTGTGATTGAGGTACCTA
72353785 T
1 T
72353786 ATGGCATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.20, C:0.07, G:0.25, T:0.47
Consensus pattern (27 bp):
TTAGTTTGATTGTGATTGAGGTACCTA
Found at i:72355859 original size:42 final size:44
Alignment explanation
Indices: 72355753--72355859 Score: 130
Period size: 44 Copynumber: 2.5 Consensus size: 44
72355743 TGTGTTATCA
* * *
72355753 TGTAAGACCACATCTGGGACGTTGGCATCGACTTATGATTTACG
1 TGTAAGACCATATCTGGGACATCGGCATCGACTTATGATTTACG
* *
72355797 TGTAAGACCATGTCTAGGACATCGGCATCGTAC-T-TGATTT-CG
1 TGTAAGACCATATCTGGGACATCGGCATCG-ACTTATGATTTACG
*
72355839 TGTAAGACCTTATCTGGGACA
1 TGTAAGACCATATCTGGGACA
72355860 GTAGCATTGA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 20 0.37
43 6 0.11
44 26 0.48
45 2 0.04
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (44 bp):
TGTAAGACCATATCTGGGACATCGGCATCGACTTATGATTTACG
Found at i:72355911 original size:43 final size:43
Alignment explanation
Indices: 72355751--72355909 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
72355741 TATGTGTTAT
*
72355751 CATGTAAGACCACATCTGGGACGTTGGCATCGACT-TATGATTTA
1 CATGTAAGACCACATCTGGGACGTTGGCATCGA-TATTTGA-TTA
* ** * * * * *
72355795 CGTGTAAGACCATGTCTAGGACATCGGCATCG-TACTTGATTT
1 CATGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTA
* ** * *
72355837 CGTGTAAGACCTTATCTGGGACAG-TAGCATTGATATTTGATTA
1 CATGTAAGACCACATCTGGGAC-GTTGGCATCGATATTTGATTA
*
72355880 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CATGTAAGACCACATCTGGGACGTTGGCAT
72355910 TGTACGAGCT
Statistics
Matches: 88, Mismatches: 23, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
42 28 0.32
43 34 0.39
44 26 0.30
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTA
Found at i:72359044 original size:40 final size:40
Alignment explanation
Indices: 72358999--72359206 Score: 244
Period size: 40 Copynumber: 5.2 Consensus size: 40
72358989 CGGGATTTAA
* *
72358999 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGAGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGAGACTTAGC
** * * *
72359039 CCGGATATAGTAGTTCGTACAAATGCCTTCGGGACTTATC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGC
*
72359079 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGC
72359119 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-AGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGA-GACTTAGC
* * *
72359159 CCGGA-ATTAGTCACTAGCACAAAAGCCTTCGAGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGAGACTTAGC
*
72359199 CCGAATAT
1 CCGGATAT
72359207 CATTCGAATA
Statistics
Matches: 147, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
39 2 0.01
40 143 0.97
41 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGC
Found at i:72363915 original size:13 final size:13
Alignment explanation
Indices: 72363897--72363921 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72363887 CTCAATGTGA
72363897 TTTGAATTTTGAT
1 TTTGAATTTTGAT
72363910 TTTGAATTTTGA
1 TTTGAATTTTGA
72363922 GTTGATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (13 bp):
TTTGAATTTTGAT
Found at i:72367022 original size:49 final size:48
Alignment explanation
Indices: 72366960--72367094 Score: 148
Period size: 49 Copynumber: 2.8 Consensus size: 48
72366950 TTAAAGGTCC
* *
72366960 GCACACATAGTGCTCT-TACTCATTCGCACACATAGTGCCACGT-TTCCTT
1 GCACACATAGTGCTATATAATC--TCGCACACATAGTGCCACGTATT-CTT
* *
72367009 GCACACATAGTGCTATATAATCTCGCACACATAGTGCCATGTAGTTTTT
1 GCACACATAGTGCTATATAATCTCGCACACATAGTGCCACGTA-TTCTT
** * *
72367058 GCACACATAGTGCCGTATAACCTCGCATACATAGTGC
1 GCACACATAGTGCTATATAATCTCGCACACATAGTGC
72367095 TGAAATTTCT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
48 19 0.25
49 50 0.67
50 6 0.08
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (48 bp):
GCACACATAGTGCTATATAATCTCGCACACATAGTGCCACGTATTCTT
Found at i:72367036 original size:24 final size:24
Alignment explanation
Indices: 72366959--72367094 Score: 96
Period size: 24 Copynumber: 5.6 Consensus size: 24
72366949 TTTAAAGGTC
* *
72366959 CGCACACATAGTGCTCTTACTCAT-T
1 CGCACACATAGTGC-CATA-TAATCT
** *
72366984 CGCACACATAGTGCCACGT-TTCCT
1 CGCACACATAGTGCCATATAAT-CT
* *
72367008 TGCACACATAGTGCTATATAATCT
1 CGCACACATAGTGCCATATAATCT
* * *
72367032 CGCACACATAGTGCCATGTAGTTTT
1 CGCACACATAGTGCCATATA-ATCT
* * *
72367057 TGCACACATAGTGCCGTATAACCT
1 CGCACACATAGTGCCATATAATCT
*
72367081 CGCATACATAGTGC
1 CGCACACATAGTGC
72367095 TGAAATTTCT
Statistics
Matches: 85, Mismatches: 22, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 49 0.58
25 34 0.40
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (24 bp):
CGCACACATAGTGCCATATAATCT
Found at i:72373910 original size:32 final size:32
Alignment explanation
Indices: 72373869--72373937 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
72373859 AATGTACTTG
72373869 AAATACAAGGATATGATTTGTATATGTTATAT
1 AAATACAAGGATATGATTTGTATATGTTATAT
72373901 AAATACAAGGATATGATTTGTATATGTTATAT
1 AAATACAAGGATATGATTTGTATATGTTATAT
72373933 AAATA
1 AAATA
72373938 TATGAAGTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.43, C:0.03, G:0.14, T:0.39
Consensus pattern (32 bp):
AAATACAAGGATATGATTTGTATATGTTATAT
Found at i:72376588 original size:9 final size:9
Alignment explanation
Indices: 72376574--72376606 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
72376564 GAATTATTCA
72376574 AATCGAGTT
1 AATCGAGTT
72376583 AATCGAGTT
1 AATCGAGTT
*
72376592 AATCGAATT
1 AATCGAGTT
72376601 AATCGA
1 AATCGA
72376607 ATCAACTCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (9 bp):
AATCGAGTT
Found at i:72377350 original size:5 final size:5
Alignment explanation
Indices: 72377340--72377365 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
72377330 GAACAAATAT
72377340 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
72377366 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:72379820 original size:16 final size:18
Alignment explanation
Indices: 72379782--72379823 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
72379772 GAAAAGAAAG
*
72379782 GAAAACAATGGATAAAAA
1 GAAAAGAATGGATAAAAA
72379800 GAAAAGAATGGA-AAAAA
1 GAAAAGAATGGATAAAAA
72379817 -AAAAGAA
1 GAAAAGAA
72379824 AAGGAAAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.30
17 5 0.22
18 11 0.48
ACGTcount: A:0.71, C:0.02, G:0.19, T:0.07
Consensus pattern (18 bp):
GAAAAGAATGGATAAAAA
Found at i:72385211 original size:25 final size:25
Alignment explanation
Indices: 72385183--72385232 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
72385173 CTCAAAGCTC
*
72385183 TTTTTAATTA-AATTATTTTCTTTAT
1 TTTTTAAATAGAATTATTTT-TTTAT
*
72385208 TTTTTAAATAGTATTATTTTTTTAT
1 TTTTTAAATAGAATTATTTTTTTAT
72385233 AATTTCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (25 bp):
TTTTTAAATAGAATTATTTTTTTAT
Found at i:72386931 original size:18 final size:18
Alignment explanation
Indices: 72386908--72386950 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
72386898 TGCCAAGTGC
**
72386908 GTATCCTAGTCCTTATAT
1 GTATCCTAACCCTTATAT
72386926 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
72386944 GTTTCCT
1 GTATCCT
72386951 TTTCCCAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:72389888 original size:75 final size:78
Alignment explanation
Indices: 72389723--72389943 Score: 236
Period size: 75 Copynumber: 2.8 Consensus size: 78
72389713 GCTACTCGTT
* * *
72389723 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGG--ATAGTAACTCACACAAATGCCTTCAGGACTTAACCCGG
* *
72389788 ATTTAGTAACTTGTA
64 ATTTAGTAACTCGCA
* * *
72389803 CAAATGCCTTCGGGACTTAACCCGGAT-TTAACTCACACAAATGCCTTCGGGA-TTAACCTGGA-
1 CAAATGCCTTCGGGACTTAACCCGGATAGTAACTCACACAAATGCCTTCAGGACTTAACCCGGAT
72389865 TTAGTAACTCGCA
66 TTAGTAACTCGCA
* * * * *
72389878 CAAATGCCTTC-GGATCTTAATCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATA--GTAACTCA-CACAAATGCCTTCAGGACTTAACCC
72389941 GGA
62 GGA
72389944 CATCATTCAA
Statistics
Matches: 121, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
74 3 0.02
75 33 0.27
76 9 0.07
77 22 0.18
78 17 0.14
79 14 0.12
80 23 0.19
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAACCCGGATAGTAACTCACACAAATGCCTTCAGGACTTAACCCGGAT
TTAGTAACTCGCA
Found at i:72389897 original size:115 final size:117
Alignment explanation
Indices: 72389723--72389943 Score: 306
Period size: 115 Copynumber: 1.9 Consensus size: 117
72389713 GCTACTCGTT
* *
72389723 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGG
* *
72389788 ATTTAGTAACTT-GTACAAATGCCTTCGGGACTTAACCCGGATTTAACTCACA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAACTCACA
* * *
72389840 CAAATGCCTTCGGGA-TTAACCTGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAATCCG
1 CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCACAAATGCCTTCAGGA-CTTAACCCG
* * *
72389902 GATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
65 GATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
72389944 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
114 3 0.03
115 61 0.66
116 13 0.14
117 15 0.16
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (117 bp):
CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAACTCACA
Found at i:72389943 original size:40 final size:40
Alignment explanation
Indices: 72389723--72389943 Score: 226
Period size: 40 Copynumber: 5.7 Consensus size: 40
72389713 GCTACTCGTT
* * * *
72389723 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTTAGCA
* *
72389763 CAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTT-GTA
1 CAAATGCCTTCGGGACTTAACCCGGA-TTAGTAACTTAGCA
*
72389803 CAAATGCCTTCGGGACTTAACCCGGATT--TAACTCA-CA
1 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTTAGCA
* *
72389840 CAAATGCCTTCGGGA-TTAACCTGGATTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTTAGCA
* * *
72389878 CAAATGCCTTC-GGATCTTAATCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TAGTAACTTAGCA
*
72389919 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
72389944 CATCATTCAA
Statistics
Matches: 152, Mismatches: 18, Indels: 22
0.79 0.09 0.11
Matches are distributed among these distances:
36 11 0.07
37 24 0.16
38 17 0.11
39 11 0.07
40 76 0.50
41 13 0.09
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTTAGCA
Found at i:72393511 original size:38 final size:38
Alignment explanation
Indices: 72393450--72393526 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 38
72393440 ATGTGGCTTT
*
72393450 AATTGTCTCGACCGTAGGACACCACTCGACCTTCTTGC
1 AATTGTCTCGACCATAGGACACCACTCGACCTTCTTGC
*
72393488 AATTG-CTCGACGCATAGGCCACCACTCGACCTTCTTGC
1 AATTGTCTCGAC-CATAGGACACCACTCGACCTTCTTGC
72393526 A
1 A
72393527 TCAATACGCA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
37 6 0.17
38 30 0.83
ACGTcount: A:0.22, C:0.35, G:0.18, T:0.25
Consensus pattern (38 bp):
AATTGTCTCGACCATAGGACACCACTCGACCTTCTTGC
Found at i:72397889 original size:40 final size:40
Alignment explanation
Indices: 72397852--72397987 Score: 143
Period size: 40 Copynumber: 3.4 Consensus size: 40
72397842 GCTACTCGTT
*
72397852 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
72397892 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * *
72397932 CAAATGCCTTC-GGATCTTAATCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
72397973 CAAA-GCCTTCGGGAC
1 CAAATGCCTTCGGGAC
72397988 TTAGCCGGAC
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
39 3 0.04
40 67 0.81
41 13 0.16
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:72400618 original size:126 final size:125
Alignment explanation
Indices: 72400355--72400748 Score: 479
Period size: 126 Copynumber: 3.1 Consensus size: 125
72400345 GGCCAAACAA
* * * *
72400355 GAACTACTGTAGAAAAAGGGCATCCACGTGGGAG-ATTTTTCAGTAATTTTGCTGATAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATC
* * * *
72400419 CTGCTTGAAGCATTTTTGACACTATTTTTTTAGAACCGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGTATTTTTGAAACTA-TTTTTCAGAACCGTCTTCTCAAAATTATTTTTTTAG
* * * * *
72400480 GAACTACAGTAGAAAAAGAGCGTCAATGTGGGAGCTTTTTTTCAGTAATTTTGTTGACAATGCAT
1 GAACTACTGTAGAAAAAGAGCGTCCATGTGGGAGC-TTTTTTCAGTAATTTTGCTGATAGTGCAT
*
72400545 CCTGCTTGAAGTATTTTTGAAACTCTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTTAG
65 CCTGCTTGAAGTATTTTTGAAACTATTTTTCAGAACCGTCTTCTCAAAATTATTTTTTTAG
* * * * *
72400606 GAACTACGGTAGAAAAAGAGTGTCCATGTGAGAACTTTTTTCAATAATTTTGCTGATAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATC
* * * * * * *
72400671 CTACTTGAAGTGTTTTTGATATTATCTTTTCACG-ACCATCTTCTTAAAATTAATTTTTCTA-
66 CTGCTTGAAGTATTTTTGAAACTAT-TTTTCA-GAACCGTCTTCTCAAAATT-ATTTTTTTAG
*
72400732 CAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
72400749 AATAAAATAA
Statistics
Matches: 231, Mismatches: 33, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
125 75 0.32
126 100 0.43
127 56 0.24
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (125 bp):
GAACTACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATC
CTGCTTGAAGTATTTTTGAAACTATTTTTCAGAACCGTCTTCTCAAAATTATTTTTTTAG
Found at i:72400903 original size:41 final size:41
Alignment explanation
Indices: 72400824--72400903 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
72400814 TTTTTTAAAA
*
72400824 CTAAACCCTAATTTAATTAATTTTCTTAAAAACTCTAAACT
1 CTAAACCCTAATTTAATTAATTTTCTTAAAAACCCTAAACT
* *
72400865 CTAAACTCTAATTTAATTAATTTAT-TTAAAACCCCTAAA
1 CTAAACCCTAATTTAATTAATTT-TCTTAAAAACCCTAAA
72400904 ACCTAATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
41 34 0.97
42 1 0.03
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (41 bp):
CTAAACCCTAATTTAATTAATTTTCTTAAAAACCCTAAACT
Found at i:72401447 original size:30 final size:26
Alignment explanation
Indices: 72401408--72401498 Score: 116
Period size: 26 Copynumber: 3.5 Consensus size: 26
72401398 ATGTAAAATG
72401408 TTTATAAATAAATATTAATAATTTTA
1 TTTATAAATAAATATTAATAATTTTA
72401434 TTTATAAATAAATATTAATAATTTTA
1 TTTATAAATAAATATTAATAATTTTA
* *
72401460 -TT-TAAATATAAT-TAAATAATAATTA
1 TTTATAAATA-AATATTAATAAT-TTTA
*
72401485 ATTATAAATAAATA
1 TTTATAAATAAATA
72401499 CTAAAGCTTA
Statistics
Matches: 58, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
24 13 0.22
25 8 0.14
26 31 0.53
27 6 0.10
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
TTTATAAATAAATATTAATAATTTTA
Found at i:72401554 original size:22 final size:22
Alignment explanation
Indices: 72401506--72401548 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
72401496 ATACTAAAGC
72401506 TTAAATCATAAATTTTAAATCA
1 TTAAATCATAAATTTTAAATCA
72401528 TTAAATTCA-AAATTTTAAATC
1 TTAAA-TCATAAATTTTAAATC
72401549 TGTAAAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (22 bp):
TTAAATCATAAATTTTAAATCA
Found at i:72409379 original size:55 final size:54
Alignment explanation
Indices: 72409269--72409507 Score: 224
Period size: 55 Copynumber: 4.5 Consensus size: 54
72409259 ATTAGGGTTT
* * * * * *
72409269 AAGGGTACCATGTAAGACTATGCCAAGGCATGGAAATTGTTAAGGTTTC-TGAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACAT-GACATTGGTAA-GTTTCATAAGGC
* * * *
72409324 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTC-ATAAGGC
* * * *
72409379 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGACATTGGTGAG-TTCATAAAGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTCATAAGGC
* * *
72409432 AAGGATACCATGTAAGACCATGTCGAGACATGACAATGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTCATAAGGC
*
72409481 AAGGATACCATGTAAGACCATGACAAG
1 AAGGATACCATGTAAGACCATGCCAAG
72409508 TCAAGGAAAT
Statistics
Matches: 154, Mismatches: 25, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
49 25 0.16
52 6 0.04
53 43 0.28
54 14 0.09
55 62 0.40
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTCATAAGGC
Found at i:72409475 original size:108 final size:110
Alignment explanation
Indices: 72409276--72409525 Score: 277
Period size: 108 Copynumber: 2.4 Consensus size: 110
72409266 TTTAAGGGTA
* * * * *
72409276 CCATGTAAGACTATGCCAAGGCATGGAAATTGTTAAGGTTTCTGAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAAGCAAGGATACCATGTAAGA
* *
72409341 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
* *
72409386 CCATGTAAGACCATGCCAAGGCAT-GACATTGGTGA-G-TTCATAAAGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAAGCAAGGATACCATGTAAG
* * * *
72409448 ACCATGTCGAGACATGACAATGGTAAGTTTC-AAAAGG---A--TA
65 ACCATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
* * *
72409488 CCATGTAAGACCATGACAAGTCAAGGAAA-TGGTAAGGT
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGT
72409526 ACCCGTGTAT
Statistics
Matches: 118, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
102 27 0.23
103 4 0.03
104 1 0.01
107 8 0.07
108 47 0.40
109 8 0.07
110 23 0.19
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAAGCAAGGATACCATGTAAGA
CCATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:72409502 original size:49 final size:51
Alignment explanation
Indices: 72409323--72409507 Score: 160
Period size: 53 Copynumber: 3.5 Consensus size: 51
72409313 GTTTCTGAGG
* * * * * *
72409323 CAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAG--T-TATAA-A
* * * *
72409378 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGACATTGGTGAGTTCATAAA
1 C-AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTT-ATAAA
* * *
72409430 GCAAGGATACCATGTAAGACCATGTCGAGACATGACAATGGTAAGTT-TCAA
1 -CAAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTATAAA
*
72409481 -AAGGATACCATGTAAGACCATGACAAG
1 CAAGGATACCATGTAAGACCATGCCAAG
72409508 TCAAGGAAAT
Statistics
Matches: 109, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
49 25 0.23
51 3 0.03
52 5 0.05
53 40 0.37
55 32 0.29
56 4 0.04
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (51 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTATAAA
Found at i:72409742 original size:16 final size:16
Alignment explanation
Indices: 72409721--72409755 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
72409711 ATAAATTTGA
72409721 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
72409737 TTAAGTAAGTGAGTAT
1 TTAAGTAAGTAAGTAT
72409753 TTA
1 TTA
72409756 TGTCTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:72417026 original size:53 final size:53
Alignment explanation
Indices: 72416844--72417075 Score: 251
Period size: 53 Copynumber: 4.4 Consensus size: 53
72416834 ATTAGGGTCT
* ** *
72416844 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGTTTTTAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAAGTTCATAAGGC
* * *
72416898 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG-TTC-ATAAGGC
* * *
72416953 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * *
72417006 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAGGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
72417055 AAGGATACCATGTAAGACCAT
1 AAGGATACCATGTAAGACCAT
72417076 CACAACTCAT
Statistics
Matches: 153, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
49 21 0.14
51 1 0.01
52 6 0.04
53 48 0.31
54 36 0.24
55 37 0.24
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:72417052 original size:108 final size:109
Alignment explanation
Indices: 72416851--72417052 Score: 316
Period size: 108 Copynumber: 1.9 Consensus size: 109
72416841 TCTAAGGATA
** *
72416851 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGTTTTTAAGGAAAGGATATCATGTAAGAC
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGTTCATAAGGAAAGGATACCATGTAAGAC
*
72416916 CATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTC
66 CATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTC
* *
72416960 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGAC
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGTTCATAAGGAAAGGATACCATGTAAGAC
* * *
72417024 CATGTCGAGACATGGCAATGGTAGGTTTC
66 CATGTCAAGACATGGCAATGATAAGTTTC
72417053 AAAAGGATAC
Statistics
Matches: 84, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
108 57 0.68
109 27 0.32
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGTTCATAAGGAAAGGATACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:72417316 original size:16 final size:16
Alignment explanation
Indices: 72417295--72417325 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72417285 ATAAATATGA
72417295 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
72417311 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
72417326 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:72420947 original size:44 final size:44
Alignment explanation
Indices: 72420882--72420966 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 44
72420872 TTGATATCTC
* *
72420882 AAAGTCCATGGTTGTACCATGGCAAT-TAAGGAAGAATTGACAGA
1 AAAGTCCATGGTTATAACATGGC-ATCTAAGGAAGAATTGACAGA
*
72420926 AAAGTCCAT-GTTCATAACATGGCATCTAAGGAGGAATTGAC
1 AAAGTCCATGGTT-ATAACATGGCATCTAAGGAAGAATTGAC
72420967 GGTTAAGGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 5 0.14
44 31 0.86
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCATCTAAGGAAGAATTGACAGA
Found at i:72421163 original size:47 final size:47
Alignment explanation
Indices: 72421105--72421226 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
72421095 ATATTGGCAC
*
72421105 TAAGACAAGGATATCATGTAAAACCATGTTAGGAACATGGCATTTGG
1 TAAGACAAGGATATCATGTAAGACCATGTTAGGAACATGGCATTTGG
* *
72421152 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATATCATGTAAGACCATGTTAGGAACATGGCATTTGG
*
72421199 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATATCATGTAAGACCATG
72421227 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATATCATGTAAGACCATGTTAGGAACATGGCATTTGG
Found at i:72421274 original size:54 final size:54
Alignment explanation
Indices: 72421208--72421412 Score: 223
Period size: 55 Copynumber: 3.8 Consensus size: 54
72421198 GTAAGATAAG
* *
72421208 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAA
* * * * *
72421262 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGCAAA
* * * * * * * *
72421317 GGTCCCATGTAAGACCATGCCAAGGCGTGGCATTGGTGAGTTC-GTAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAA
* * * *
72421370 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
72421413 AAAAAGGAAA
Statistics
Matches: 126, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
53 42 0.33
54 39 0.31
55 45 0.36
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAA
Found at i:72434487 original size:40 final size:40
Alignment explanation
Indices: 72434417--72434672 Score: 346
Period size: 40 Copynumber: 6.5 Consensus size: 40
72434407 AAGCCAAGTA
* * * * *
72434417 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
72434456 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72434496 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72434536 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72434576 CCTTCGGGACTTAGCCCGGATAT-GTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72434615 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72434655 CCTTC-GGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72434673 TTATCATCCA
Statistics
Matches: 201, Mismatches: 10, Indels: 12
0.90 0.04 0.05
Matches are distributed among these distances:
38 1 0.00
39 63 0.31
40 136 0.68
41 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72434628 original size:119 final size:119
Alignment explanation
Indices: 72434456--72434672 Score: 382
Period size: 119 Copynumber: 1.8 Consensus size: 119
72434446 CGCTCGAATA
72434456 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
1 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
*
72434521 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
66 TAACTAGCACAAATGCCTTC-GGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
72434576 CCTTCGGGACTTAGCCCGGATAT-GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
1 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
* *
72434640 TCACTAGCGCAAATGCCTTCGGACTTAGCCCGG
66 TAACTAGCACAAATGCCTTCGGACTTAGCCCGG
72434673 TTATCATCCA
Statistics
Matches: 93, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
118 13 0.14
119 58 0.62
120 22 0.24
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.21
Consensus pattern (119 bp):
CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
TAACTAGCACAAATGCCTTCGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:72440192 original size:8 final size:8
Alignment explanation
Indices: 72440179--72440225 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
72440169 ATCGGCAAAA
72440179 GCCGAAAT
1 GCCGAAAT
72440187 GCCGAAAT
1 GCCGAAAT
*
72440195 GCCGAAAA
1 GCCGAAAT
* *
72440203 ACTGAAAT
1 GCCGAAAT
*
72440211 GCCGAAAA
1 GCCGAAAT
72440219 GCCGAAA
1 GCCGAAA
72440226 GTTTGGCTAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.45, C:0.23, G:0.23, T:0.09
Consensus pattern (8 bp):
GCCGAAAT
Found at i:72440200 original size:16 final size:16
Alignment explanation
Indices: 72440179--72440225 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
72440169 ATCGGCAAAA
*
72440179 GCCGAAATGCCGAAAT
1 GCCGAAAAGCCGAAAT
* *
72440195 GCCGAAAAACTGAAAT
1 GCCGAAAAGCCGAAAT
72440211 GCCGAAAAGCCGAAA
1 GCCGAAAAGCCGAAA
72440226 GTTTGGCTAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.45, C:0.23, G:0.23, T:0.09
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Done.