Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 22 of 352
Found at i:7009258 original size:11 final size:11
Alignment explanation
Indices: 7009238--7009271 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
7009228 ATGTTTCATA
7009238 TTATTATATTAT
1 TTATT-TATTAT
7009250 TTATTTATTAT
1 TTATTTATTAT
*
7009261 ATATTTATTAT
1 TTATTTATTAT
7009272 GTAAATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTATTTATTAT
Found at i:7009259 original size:16 final size:15
Alignment explanation
Indices: 7009238--7009269 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7009228 ATGTTTCATA
7009238 TTATTATATTATTTAT
1 TTATTATA-TATTTAT
7009254 TTATTATATATTTAT
1 TTATTATATATTTAT
7009269 T
1 T
7009270 ATGTAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTATTATATATTTAT
Found at i:7009266 original size:64 final size:63
Alignment explanation
Indices: 7009127--7009260 Score: 159
Period size: 63 Copynumber: 2.2 Consensus size: 63
7009117 CCTTTCTTTA
* * *
7009127 TTTTTGTTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATATTTGTT
1 TTTTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTATTATATTTGTT
* * *
7009191 TTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATA-TTATT
1 TTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATTATTATATTTGTT
*
7009251 TATTTATTAT
1 TTTTTATTAT
7009261 ATATTTATTA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
60 13 0.21
61 13 0.21
62 4 0.06
63 20 0.32
64 12 0.19
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.63
Consensus pattern (63 bp):
TTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTATTATATTTGTT
Found at i:7009891 original size:29 final size:30
Alignment explanation
Indices: 7009844--7009911 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
7009834 TGGCCCAAGA
* *
7009844 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
7009874 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
7009904 GCAAATAT
1 GTAAATAT
7009912 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:7012394 original size:46 final size:46
Alignment explanation
Indices: 7012336--7012747 Score: 682
Period size: 46 Copynumber: 9.0 Consensus size: 46
7012326 AGTGTGCTCT
* * * *
7012336 CTGAAATGAAATGTGTAAAACCATGGTTGAAAGATACCATGACAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7012382 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
7012428 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7012474 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
7012520 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
7012566 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7012612 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
7012658 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
7012704 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
7012748 TCATGTCAAA
Statistics
Matches: 349, Mismatches: 16, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
45 1 0.00
46 348 1.00
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:7013777 original size:126 final size:126
Alignment explanation
Indices: 7013552--7013795 Score: 434
Period size: 126 Copynumber: 1.9 Consensus size: 126
7013542 CATTGATCTT
* *
7013552 CTCTCAAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAAAATTCGAAGAATCGTGCCCTA
*
7013617 ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
* *
7013678 CTCTCAAAAATTTTCATAATAAAGGCAATTTTCGGTATTTAAAAAATTCGAAGAATCGTGCCCTA
1 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAAAATTCGAAGAATCGTGCCCTA
*
7013743 ACGTACTGGGTTTCACTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
7013796 AGGCTAAAAC
Statistics
Matches: 112, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 112 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (126 bp):
CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAAAATTCGAAGAATCGTGCCCTA
ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
Found at i:7017325 original size:21 final size:21
Alignment explanation
Indices: 7017301--7017345 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
7017291 GAGGGATCAA
*
7017301 ATGCTGGAGTCCCAGAAAAAC
1 ATGCTGGAGTCACAGAAAAAC
*
7017322 ATGCTGGAGTCACAGAACAAC
1 ATGCTGGAGTCACAGAAAAAC
7017343 ATG
1 ATG
7017346 ATGAGCCAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (21 bp):
ATGCTGGAGTCACAGAAAAAC
Found at i:7019917 original size:15 final size:15
Alignment explanation
Indices: 7019894--7019973 Score: 60
Period size: 15 Copynumber: 5.3 Consensus size: 15
7019884 CACTTAAAAA
7019894 AAAGAAGAAAAAAAGG
1 AAAG-AGAAAAAAAGG
*
7019910 AAAGAGAAAAAAAGA
1 AAAGAGAAAAAAAGG
7019925 AAAG-GAAAAAGAAGAG
1 AAAGAGAAAAA-AAG-G
*
7019941 AAA-A-CAAAAAAGAG
1 AAAGAGAAAAAAAG-G
*
7019955 AAAGA-AAATAAAAGC
1 AAAGAGAAA-AAAAGG
7019970 AAAG
1 AAAG
7019974 GAGAGGCCAA
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
14 14 0.26
15 28 0.52
16 12 0.22
ACGTcount: A:0.75, C:0.03, G:0.21, T:0.01
Consensus pattern (15 bp):
AAAGAGAAAAAAAGG
Found at i:7019919 original size:14 final size:13
Alignment explanation
Indices: 7019891--7019957 Score: 61
Period size: 12 Copynumber: 5.2 Consensus size: 13
7019881 CTTCACTTAA
7019891 AAAAAAG-AAGA-
1 AAAAAAGAAAGAG
7019902 AAAAAAGGAAAGAG
1 AAAAAA-GAAAGAG
7019916 AAAAAAAGAAA-AG
1 -AAAAAAGAAAGAG
*
7019929 GAAAAAG-AAGAG
1 AAAAAAGAAAGAG
*
7019941 AAAACAAAAAAGAG
1 AAAA-AAGAAAGAG
7019955 AAA
1 AAA
7019958 GAAAATAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
11 8 0.17
12 12 0.26
13 8 0.17
14 12 0.26
15 6 0.13
ACGTcount: A:0.78, C:0.01, G:0.21, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAGAG
Found at i:7019939 original size:25 final size:27
Alignment explanation
Indices: 7019890--7019957 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 27
7019880 ACTTCACTTA
7019890 AAAAAAAGAAGAA--AAAAAGGAAAGAG
1 AAAAAAAGAA-AAGGAAAAAGGAAAGAG
7019916 AAAAAAAGAAAAGGAAAAA-G-AAGAG
1 AAAAAAAGAAAAGGAAAAAGGAAAGAG
*
7019941 AAAACAA-AAAAGAGAAA
1 AAAAAAAGAAAAG-GAAA
7019958 GAAAATAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
24 5 0.13
25 17 0.45
26 11 0.29
27 5 0.13
ACGTcount: A:0.78, C:0.01, G:0.21, T:0.00
Consensus pattern (27 bp):
AAAAAAAGAAAAGGAAAAAGGAAAGAG
Found at i:7019950 original size:17 final size:18
Alignment explanation
Indices: 7019920--7019967 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
7019910 AAAGAGAAAA
**
7019920 AAAGAAAAGGAAAAAGA-
1 AAAGAAAACAAAAAAGAG
*
7019937 AGAGAAAACAAAAAAGAG
1 AAAGAAAACAAAAAAGAG
*
7019955 AAAGAAAATAAAA
1 AAAGAAAACAAAA
7019968 GCAAAGGAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.02
Consensus pattern (18 bp):
AAAGAAAACAAAAAAGAG
Found at i:7021497 original size:44 final size:46
Alignment explanation
Indices: 7021449--7021535 Score: 106
Period size: 46 Copynumber: 1.9 Consensus size: 46
7021439 CTAAATATAG
* *
7021449 CAGATCTCATC-CCACTG-GCTGGAGTGGAACAGATCAAATTTCGA
1 CAGATCTCATCTCCACTGAGCAGGAGCGGAACAGATCAAATTTCGA
* * * *
7021493 CAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTT
1 CAGATCTCATCTCCACTGAGCAGGAGCGGAACAGATCAAATTT
7021536 TGGCGAATCT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 10 0.29
45 4 0.11
46 21 0.60
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (46 bp):
CAGATCTCATCTCCACTGAGCAGGAGCGGAACAGATCAAATTTCGA
Found at i:7021538 original size:179 final size:176
Alignment explanation
Indices: 7021226--7021666 Score: 704
Period size: 179 Copynumber: 2.5 Consensus size: 176
7021216 CAGATTTTAG
* *
7021226 CAAGCCTTATCCCACTGAGCAGGAGTGGAATAGGCTAAATATAGCAGATCTCATCCTACTGGCAG
1 CAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAG
* * * *
7021291 GAGTGGAATATATCAAATTTCGACAGATCTTATCTTCGTTGATCAGGAGCGGAGCAAATCAAATT
66 GAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAAATCAAATT
7021356 TTGGCGAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCCA
131 TTGGCGAATCTTACCTCCATGTA--GGCAATGGAGCAGATTTCAGCCA
* * *
7021404 CCAGCCTTATCTTCACTGAGCAAGAGT-GAAGCAGGCTAAATATAGCAGATCTCATCCCACTGGC
1 CAAGCCTTATC-CCACTGAGCAGGAGTGGAA-CAGGCTAAATATAGCAGATCTCATCCCACTGGC
* *
7021468 TGGAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAA
64 AGGAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAAATCAAA
* *
7021533 TTTTGGCGAATCTTATCTCCATGTAGGCAATGGAGTAGATTTCAGCCA
129 TTTTGGCGAATCTTACCTCCATGTAGGCAATGGAGCAGATTTCAGCCA
* *
7021581 CAAGCCTTATCCCACTGAGTAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGACAG
1 CAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAG
7021646 GAGTGGAACAGATCAAATTTC
66 GAGTGGAACAGATCAAATTTC
7021667 AGCGGATCTT
Statistics
Matches: 241, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
176 66 0.27
177 35 0.15
178 13 0.05
179 127 0.53
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (176 bp):
CAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAG
GAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAAATCAAATT
TTGGCGAATCTTACCTCCATGTAGGCAATGGAGCAGATTTCAGCCA
Found at i:7021707 original size:132 final size:133
Alignment explanation
Indices: 7021508--7021970 Score: 575
Period size: 132 Copynumber: 3.5 Consensus size: 133
7021498 CTTATCTTCG
* * ** *
7021508 CTGAGCAGGAGCGGAGCAGATCAAATTTTGGCGAATCTTATCTCCATGTA--GGCAATGGAGTAG
1 CTGAGCAGGAGTGGAACAGATCAAATTTCAGCGAATCTTATCTCCATGTATCGGCAATGGAGCAG
* *
7021571 ATTTCAGCCACAAGCCTTATCCCACTGAGTAGGAGTGGAACAGGCTAAATATAGCAGATCTCATC
66 ATTTCAGCCACCAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATC
7021636 CCA
131 CCA
* *
7021639 CTGA-CAGGAGTGGAACAGATCAAATTTCAGCGGATCTTGTCTCCATGTATCGGCAATGGAGCAG
1 CTGAGCAGGAGTGGAACAGATCAAATTTCAGCGAATCTTATCTCCATGTATCGGCAATGGAGCAG
* * * * *
7021703 ATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCACGCTAAA-CT--CTAGATCTTA
66 ATTTCAGCCACCAGCCTTATC-CCACTGAGCAGGAGTGGAACAGGCTAAATATAGC-AGATCTCA
* *
7021765 TCTTCG
129 TC-CCA
* * *
7021771 CTGAGTAGGAGTGGAGCAGATCAAATTT-TGACGAATCTTATCTCCATGTATCGGCAATGGAGCA
1 CTGAGCAGGAGTGGAACAGATCAAATTTCAG-CGAATCTTATCTCCATGTATCGGCAATGGAGCA
* * * * *
7021835 GA-TTCAAACCACCAGCGTTATCCCACTAAGCAGGAGTAGAACAGGCTAAATATAGTAGATCTCA
65 GATTTC-AGCCACCAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCA
7021899 TCCCA
129 TCCCA
* * *
7021904 CTG-GCAGGAGTGGAATAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGACAATGGAGCAG
1 CTGAGCAGGAGTGGAACAGATCAAATTTCAGCGAATCTTATCTCCATGTATCGGCAATGGAGCAG
7021968 ATT
66 ATT
7021971 CAAACCACCA
Statistics
Matches: 280, Mismatches: 39, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
130 40 0.14
131 13 0.05
132 119 0.43
133 99 0.35
134 9 0.03
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (133 bp):
CTGAGCAGGAGTGGAACAGATCAAATTTCAGCGAATCTTATCTCCATGTATCGGCAATGGAGCAG
ATTTCAGCCACCAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATC
CCA
Found at i:7021965 original size:265 final size:263
Alignment explanation
Indices: 7021494--7021970 Score: 785
Period size: 265 Copynumber: 1.8 Consensus size: 263
7021484 AAATTTCGAC
*
7021494 AGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGGCGAATCTTATCTCCATGTAG
1 AGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGACGAATCTTATCTCCATGTAG
* * * * *
7021559 GCAATGGAGTAGATTTCAGCCACAAGCCTTATCCCACTGAGTAGGAGTGGAACAGGCTAAATATA
66 GCAATGGAGCAGATTTCAACCACAAGCCTTATCCCACTAAGCAGGAGTAGAACAGGCTAAATATA
*
7021624 GCAGATCTCATCCCACTGACAGGAGTGGAACAGATCAAATTTCAGCGGATCTTGTCTCCATGTAT
131 GCAGATCTCATCCCACTGACAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTAT
*
7021689 CGGCAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCACGCTAAAC
196 CGACAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCACGCTAAAC
7021754 TCT
261 TCT
* *
7021757 AGATCTTATCTTCGCTGAGTAGGAGTGGAGCAGATCAAATTTTGACGAATCTTATCTCCATGTAT
1 AGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGACGAATCTTATCTCCATGTA-
* *
7021822 CGGCAATGGAGCAGA-TTCAAACCACCAGCGTTATCCCACTAAGCAGGAGTAGAACAGGCTAAAT
65 -GGCAATGGAGCAGATTTC-AACCACAAGCCTTATCCCACTAAGCAGGAGTAGAACAGGCTAAAT
* * *
7021886 ATAGTAGATCTCATCCCACTGGCAGGAGTGGAATAGATCAAATTTCAGCGGATCTTATCTCCATG
128 ATAGCAGATCTCATCCCACTGACAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATG
7021951 TATCGACAATGGAGCAGATT
193 TATCGACAATGGAGCAGATT
7021971 CAAACCACCA
Statistics
Matches: 196, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
263 61 0.31
264 3 0.02
265 132 0.67
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (263 bp):
AGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGACGAATCTTATCTCCATGTAG
GCAATGGAGCAGATTTCAACCACAAGCCTTATCCCACTAAGCAGGAGTAGAACAGGCTAAATATA
GCAGATCTCATCCCACTGACAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTAT
CGACAATGGAGCAGATTTCAGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCACGCTAAAC
TCT
Found at i:7022027 original size:132 final size:131
Alignment explanation
Indices: 7021512--7022028 Score: 523
Period size: 132 Copynumber: 3.9 Consensus size: 131
7021502 TCTTCGCTGA
* * ** * *
7021512 GCAGGAGCGGAGCAGATCAAATTTTGGCGAATCTTATCTCCATGTA--GGCAATGGAGTAGATTT
1 GCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCAGA-TT
* * * * *
7021575 C-AGCCACAAGCCTTATCCCACTGAGTAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCA
65 CAAACCACCAG-CTTATCCCACTAAGCAGGAGTGGAACAGGCTAAAAATAGCAGATCTCATCCCA
7021639 CTG
129 CTG
* *
7021642 ACAGGAGTGGAACAGATCAAATTTCAGCGGATCTTGTCTCCATGTATCGGCAATGGAGCAGATTT
1 GCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCAGA-TT
* * * * * * *
7021707 C-AGCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCACGCT-AAACT--CTAGATCTTATCT
65 CAAACCACCAG-CTTATC-CCACTAAGCAGGAGTGGAACAGGCTAAAAATAGC-AGATCTCATC-
* *
7021768 TCGCTG
126 CCACTG
* * * *
7021774 AGTAGGAGTGGAGCAGATCAAATTT-TGACGAATCTTATCTCCATGTATCGGCAATGGAGCAGAT
1 -GCAGGAGTGGAACAGATCAAATTTCAG-CGGATCTTATCTCCATGTATCGGCAATGGAGCAGAT
* * *
7021838 TCAAACCACCAGCGTTATCCCACTAAGCAGGAGTAGAACAGGCTAAATATAGTAGATCTCATCCC
64 TCAAACCACCAGC-TTATCCCACTAAGCAGGAGTGGAACAGGCTAAAAATAGCAGATCTCATCCC
7021903 ACTG
128 ACTG
* *
7021907 GCAGGAGTGGAATAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGACAATGGAGCAGATTC
1 GCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCAGATTC
* * * * *
7021972 AAACCACCAGTCTTAACCCCCTAAACAGTAG-GGTAATAGGCTAAAAACTA-CAGATCT
66 AAACCACCAG-CTTATCCCACTAAGCAGGAGTGG-AACAGGCTAAAAA-TAGCAGATCT
7022029 TGTCTTCTTA
Statistics
Matches: 321, Mismatches: 50, Indels: 30
0.80 0.12 0.07
Matches are distributed among these distances:
130 40 0.12
131 10 0.03
132 163 0.51
133 99 0.31
134 9 0.03
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (131 bp):
GCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCAGATTC
AAACCACCAGCTTATCCCACTAAGCAGGAGTGGAACAGGCTAAAAATAGCAGATCTCATCCCACT
G
Found at i:7022201 original size:87 final size:87
Alignment explanation
Indices: 7021983--7022716 Score: 717
Period size: 87 Copynumber: 8.5 Consensus size: 87
7021973 AACCACCAGT
* * ** * *** * *
7021983 CTTAACCCCCTAAACAGTAGGGTAATAGGCTAAAAACTACAGATCTTGTCTTC-TTAAGCTGTAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTTGGC-TCGCCGAGCAGTGG
*
7022047 TGGAGCAGATCAAATATACACGC
65 TGGAGCAGATCAAAGATACACGC
* * * * * * * * ** ** * * *
7022070 TTTAACTCCTTAAGCAATAGGGTCACAAGTTAAAGA-TTATAGATCTTATCTC-CTTAAGAAATA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAA-ATTTACAGATCTTGGCTCGC-CGAGCAGTG
*
7022133 GTGGAACAGATCAAAGATACACGC
64 GTGGAGCAGATCAAAGATACACGC
* *
7022157 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGCAGTGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTTGGCTCGCCGAGCAGTGGT
*
7022222 GGAACAGATCAAAGATACACGC
66 GGAGCAGATCAAAGATACACGC
* * * * *
7022244 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATGTACAGATCTGGGCTCGCCTAGTAGTGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTTGGCTCGCCGAGCAGTGGT
* * * *
7022309 GGAGTAGGTCGAAG--ACTCGC
66 GGAGCAGATCAAAGATACACGC
** *
7022329 CTTAACCTTCTAAGCAGTAGGGTAACAGGCTAAAGTTTACAGA-CTTGGGCTCGCCGAGCAGTGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTT-GGCTCGCCGAGCAGTGG
* *
7022393 CGGAGCAGATCAAAGATACATGC
65 TGGAGCAGATCAAAGATACACGC
* *
7022416 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAAATCTGGGCTCGCCGAGCAGTGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTTGGCTCGCCGAGCAGTGGT
* * * * *
7022481 AGAGTAGGTCGAAG--ACTCGC
66 GGAGCAGATCAAAGATACACGC
* * *
7022501 CTTAACCCCCTAATCAGTAGGGTAACAGGCTAAAGTTTACAGA-CTTGGGCTCGCCAAGCAGTGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTT-GGCTCGCCGAGCAGTGG
7022565 TGGAGCA-AGTCAAAGACT-CA--C
65 TGGAGCAGA-TCAAAGA-TACACGC
* * * * * *
7022586 CTTAGCTCTCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTTAGCTCTCTGAGCAGTGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTTGGCTCGCCGAGCAGTGGT
* * *
7022651 GGAGCAGGTCGAAG--ACTCGC
66 GGAGCAGATCAAAGATACACGC
*
7022671 CTTAACCCCCTAAGCAATAGGGTAACAGGCTAAAA-TTACAGATCTT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTT
7022717 ATTTTCGTTG
Statistics
Matches: 536, Mismatches: 93, Indels: 39
0.80 0.14 0.06
Matches are distributed among these distances:
83 1 0.00
84 15 0.03
85 237 0.44
86 6 0.01
87 273 0.51
88 4 0.01
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (87 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTTGGCTCGCCGAGCAGTGGT
GGAGCAGATCAAAGATACACGC
Found at i:7022271 original size:43 final size:43
Alignment explanation
Indices: 7022137--7022271 Score: 114
Period size: 43 Copynumber: 3.1 Consensus size: 43
7022127 GAAATAGTGG
7022137 AACAGATCAAAGATACACGCCTTAACCCCCTAAGCAGTAGGGT
1 AACAGATCAAAGATACACGCCTTAACCCCCTAAGCAGTAGGGT
* * ** * *** * * *
7022180 AACAGGCTAAAATTTACA-GATCTGGGCTCGCC-GAGCAGT-GGCGG
1 AACA-GATCAAAGATACACG-CCTTAAC-CCCCTAAGCAGTAGG-GT
7022224 AACAGATCAAAGATACACGCCTTAACCCCCTAAGCAGTAGGGT
1 AACAGATCAAAGATACACGCCTTAACCCCCTAAGCAGTAGGGT
7022267 AACAG
1 AACAG
7022272 GCTAAAATGT
Statistics
Matches: 63, Mismatches: 22, Indels: 14
0.64 0.22 0.14
Matches are distributed among these distances:
42 3 0.05
43 31 0.49
44 26 0.41
45 3 0.05
ACGTcount: A:0.35, C:0.26, G:0.23, T:0.16
Consensus pattern (43 bp):
AACAGATCAAAGATACACGCCTTAACCCCCTAAGCAGTAGGGT
Found at i:7022362 original size:172 final size:171
Alignment explanation
Indices: 7022154--7022712 Score: 824
Period size: 172 Copynumber: 3.3 Consensus size: 171
7022144 CAAAGATACA
7022154 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGA-TCTGGGCTCGCCGAGCAG
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGACT-TGGGCTCGCCGAGCAG
* *
7022218 TGGCGGAACAGATCAAAGATACACGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATGTA
65 TGGCGGAGCAGATCAAAGATACA-GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTA
* *
7022283 CAGATCTGGGCTCGCCTAGTAGTGGCGGAGTAGGTCGAAGACT
129 CAGATCTGGGCTCGCCTAGCAGTGGTGGAGTAGGTCGAAGACT
** *
7022326 CGCCTTAACCTTCTAAGCAGTAGGGTAACAGGCTAAAGTTTACAGACTTGGGCTCGCCGAGCAGT
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGACTTGGGCTCGCCGAGCAGT
7022391 GGCGGAGCAGATCAAAGATACATGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTAC
66 GGCGGAGCAGATCAAAGATACA-GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTAC
* * *
7022456 AAATCTGGGCTCGCCGAGCAGTGGTAGAGTAGGTCGAAGACT
130 AGATCTGGGCTCGCCTAGCAGTGGTGGAGTAGGTCGAAGACT
* * *
7022498 CGCCTTAACCCCCTAATCAGTAGGGTAACAGGCTAAAGTTTACAGACTTGGGCTCGCCAAGCAGT
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGACTTGGGCTCGCCGAGCAGT
* * * *
7022563 GGTGGAGCA-AGTCAAAGACT-CA-CCTTAGCTCTCTAAGCAGTAGGGTAACAGGCTAAAATTTA
66 GGCGGAGCAGA-TCAAAGA-TACAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTA
** * *
7022625 CAGATCTTAGCTC-TCTGAGCAGTGGTGGAGCAGGTCGAAGACT
129 CAGATCTGGGCTCGCCT-AGCAGTGGTGGAGTAGGTCGAAGACT
*
7022668 CGCCTTAACCCCCTAAGCAATAGGGTAACAGGCTAAAA-TTACAGA
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGA
7022713 TCTTATTTTC
Statistics
Matches: 354, Mismatches: 29, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
169 8 0.02
170 106 0.30
171 1 0.00
172 237 0.67
173 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.20
Consensus pattern (171 bp):
CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGACTTGGGCTCGCCGAGCAGT
GGCGGAGCAGATCAAAGATACAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACA
GATCTGGGCTCGCCTAGCAGTGGTGGAGTAGGTCGAAGACT
Found at i:7022370 original size:85 final size:85
Alignment explanation
Indices: 7022154--7022715 Score: 736
Period size: 85 Copynumber: 6.6 Consensus size: 85
7022144 CAAAGATACA
7022154 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGCAGT
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGCAGT
* * *
7022219 GGCGGAACAGATCAAAGATACA
66 GGCGGAGCAGGTCAAAG--ACT
* * *
7022241 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATGTACAGATCTGGGCTCGCCTAGTAGT
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGCAGT
* *
7022306 GGCGGAGTAGGTCGAAGACT
66 GGCGGAGCAGGTCAAAGACT
** *
7022326 CGCCTTAACCTTCTAAGCAGTAGGGTAACAGGCTAAAGTTTACAGA-CTTGGGCTCGCCGAGCAG
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATC-TGGGCTCGCCGAGCAG
*
7022390 TGGCGGAGCAGATCAAAGA-T
65 TGGCGGAGCAGGTCAAAGACT
*
7022410 ACATGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAAATCTGGGCTCGCCGAGC
1 -C--GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGC
** * *
7022475 AGTGGTAGAGTAGGTCGAAGACT
63 AGTGGCGGAGCAGGTCAAAGACT
* * *
7022498 CGCCTTAACCCCCTAATCAGTAGGGTAACAGGCTAAAGTTTACAGA-CTTGGGCTCGCCAAGCAG
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATC-TGGGCTCGCCGAGCAG
* *
7022562 TGGTGGAGCAAGTCAAAGACT
65 TGGCGGAGCAGGTCAAAGACT
* * * * ** * *
7022583 CACCTTAGCTCTCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTTAGCTCTCTGAGCAGT
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGCAGT
* *
7022648 GGTGGAGCAGGTCGAAGACT
66 GGCGGAGCAGGTCAAAGACT
*
7022668 CGCCTTAACCCCCTAAGCAATAGGGTAACAGGCTAAAA-TTACAGATCT
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCT
7022716 TATTTTCGTT
Statistics
Matches: 415, Mismatches: 52, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
84 13 0.03
85 252 0.61
86 1 0.00
87 147 0.35
88 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.20
Consensus pattern (85 bp):
CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCTGGGCTCGCCGAGCAGT
GGCGGAGCAGGTCAAAGACT
Found at i:7022986 original size:29 final size:29
Alignment explanation
Indices: 7022953--7023016 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
7022943 CCAAATTAAA
7022953 CACCCCACTAAACCGA-CCACTAACTCCAT
1 CACCCCACTAAACC-ATCCACTAACTCCAT
* *
7022982 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCCACTAAACCATCCACTAACTCCAT
7023011 CACCCC
1 CACCCC
7023017 CACACCCTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 1 0.03
29 30 0.97
ACGTcount: A:0.31, C:0.52, G:0.02, T:0.16
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAACTCCAT
Found at i:7023029 original size:37 final size:37
Alignment explanation
Indices: 7022982--7023056 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
7022972 CTAACTCCAT
7022982 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
7023019 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
7023056 C
1 C
7023057 TAACTCCATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.55, G:0.00, T:0.16
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:7023058 original size:18 final size:18
Alignment explanation
Indices: 7022998--7023070 Score: 69
Period size: 18 Copynumber: 4.0 Consensus size: 18
7022988 ACTAAACCAT
7022998 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
* * *
7023016 CCAC-ACC-CTACTAAACCAT
1 CCACTACCTCCA-T-CACC-C
7023035 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
*
7023053 CCACTAACTCCATCACCC
1 CCACTACCTCCATCACCC
7023071 TACTTGTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
16 2 0.05
17 4 0.09
18 24 0.56
19 7 0.16
20 4 0.09
21 2 0.05
ACGTcount: A:0.27, C:0.56, G:0.00, T:0.16
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:7024120 original size:126 final size:126
Alignment explanation
Indices: 7023955--7024198 Score: 398
Period size: 126 Copynumber: 1.9 Consensus size: 126
7023945 CATTGATCTT
* * * * *
7023955 CTCTTAAAATTTTTCAAAATAAAGGCAATGTTCGATATTTAAATAATTCGAAGAATCATGCCGTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCAATATTTAAAGAATTCGAAGAATCATGCCCTA
* *
7024020 ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAATTCA
66 AAGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAATTCA
*
7024081 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCAATATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCAATATTTAAAGAATTCGAAGAATCATGCCCTA
* *
7024146 AAGTACTGTGTTTCACTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 AAGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
7024199 AGGCTAAAAC
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 108 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (126 bp):
CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCAATATTTAAAGAATTCGAAGAATCATGCCCTA
AAGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAATTCA
Found at i:7033323 original size:135 final size:135
Alignment explanation
Indices: 7033102--7033499 Score: 525
Period size: 135 Copynumber: 3.0 Consensus size: 135
7033092 GATGATTGGG
* * *
7033102 ATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAATTCAATCTGCTTCACTCCTGCTC
1 ATCTGCTCCATCGCCGATACATGGAGATAAGATTCTCCAAAATTCGATCTGCTTCACTCCTGCTC
* * * * *
7033167 AATGAAGATAAGATCTGGTATATTTAGCCTGCTTCACTCCTGCTCAGTGAAGATAAGGTTGGTGG
66 AGTGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGATGA
7033232 CTGAA
131 CTGAA
* * * * * * * *
7033237 ATCTGCTCCATTGTCGATCCATGGAGATAAGTTTCACCAAAATTTGATCTAC-TCTGCTCCTGCT
1 ATCTGCTCCATCGCCGATACATGGAGATAAGATTCTCCAAAATTCGATCTGCTTC-ACTCCTGCT
* * * *
7033301 CAGCGAAGATAAGA-CTTGGTATATTTAGCCTACTCCATTCCTGCTCAGTGAAGATAAAGCTGAT
65 CAGTGAAGATAAGATC-TGGTATATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGAT
* *
7033365 GATTGGA
129 GACTGAA
* * *
7033372 ATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAATTCGATCTGCTTCACTCTTGCTC
1 ATCTGCTCCATCGCCGATACATGGAGATAAGATTCTCCAAAATTCGATCTGCTTCACTCCTGCTC
7033437 AGTGAAGATAAGATCTGG--TATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGATGA
66 AGTGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGATGA
7033500 TATCTGCCAT
Statistics
Matches: 222, Mismatches: 37, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
133 42 0.19
134 3 0.01
135 174 0.78
136 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (135 bp):
ATCTGCTCCATCGCCGATACATGGAGATAAGATTCTCCAAAATTCGATCTGCTTCACTCCTGCTC
AGTGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGATGA
CTGAA
Found at i:7035291 original size:28 final size:29
Alignment explanation
Indices: 7035260--7035337 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 29
7035250 TATTATTATT
*
7035260 TATATAAATATATAAATTA-ATTATAAAG
1 TATATAAATAAATAAATTACATTATAAAG
* * *
7035288 TATATTATTAAATTAATTACATTATAAA-
1 TATATAAATAAATAAATTACATTATAAAG
*
7035316 TATTATATTAAGAAATAAATTA
1 TA-TATA--AATAAATAAATTA
7035338 AATAAAGACA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
28 17 0.45
29 11 0.29
31 10 0.26
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (29 bp):
TATATAAATAAATAAATTACATTATAAAG
Found at i:7035337 original size:31 final size:28
Alignment explanation
Indices: 7035271--7035338 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
7035261 ATATAAATAT
**
7035271 ATAAATTAATTATAAAGTATATTATTAA
1 ATAAATTAATTATAAAGTATATTAAGAA
* *
7035299 ATTAATTACATTATAAATATTATATTAAGAA
1 ATAAATTA-ATTAT-AA-AGTATATTAAGAA
7035330 ATAAATTAA
1 ATAAATTAA
7035339 ATAAAGACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 5 0.16
30 3 0.09
31 17 0.53
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (28 bp):
ATAAATTAATTATAAAGTATATTAAGAA
Found at i:7035504 original size:16 final size:16
Alignment explanation
Indices: 7035485--7035518 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7035475 AAAGAAAAAG
7035485 AAAGAAACAAAATAGA
1 AAAGAAACAAAATAGA
*
7035501 AAAGAAACAGAATAGA
1 AAAGAAACAAAATAGA
7035517 AA
1 AA
7035519 GAACAAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.74, C:0.06, G:0.15, T:0.06
Consensus pattern (16 bp):
AAAGAAACAAAATAGA
Found at i:7036235 original size:18 final size:18
Alignment explanation
Indices: 7036212--7036260 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
7036202 ATGTGAGGTA
*
7036212 AGTATTAATATTAGTATT
1 AGTATTATTATTAGTATT
7036230 AGTATTATTATTAGTATT
1 AGTATTATTATTAGTATT
*
7036248 ATTATTATTATTA
1 AGTATTATTATTA
7036261 TGAGTGGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (18 bp):
AGTATTATTATTAGTATT
Found at i:7036240 original size:3 final size:3
Alignment explanation
Indices: 7036214--7036261 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
7036204 GTGAGGTAAG
* * * *
7036214 TAT TAA TAT TAG TAT TAG TAT TAT TAT TAG TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7036262 GAGTGGGAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7036261 original size:12 final size:12
Alignment explanation
Indices: 7036214--7036261 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
7036204 GTGAGGTAAG
* *
7036214 TATTAATATTAG
1 TATTAGTATTAT
7036226 TATTAGTATTAT
1 TATTAGTATTAT
7036238 TATTAGTATTAT
1 TATTAGTATTAT
*
7036250 TATTATTATTAT
1 TATTAGTATTAT
7036262 GAGTGGGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (12 bp):
TATTAGTATTAT
Found at i:7036456 original size:24 final size:24
Alignment explanation
Indices: 7036402--7036473 Score: 67
Period size: 24 Copynumber: 2.9 Consensus size: 24
7036392 TGTGTGAAGT
*
7036402 TGTGAAATAATTATTG-ATTG-AAA
1 TGTGAAA-AATGATTGAATTGAAAA
*
7036425 GGTGGAAAAATGATTGAATTGAAAA
1 TGT-GAAAAATGATTGAATTGAAAA
7036450 TGTGAAAAATTGTAATTGAATTGA
1 TGTGAAAAA-TG--ATTGAATTGA
7036474 GAATATATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
23 9 0.22
24 14 0.35
25 7 0.17
27 10 0.25
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (24 bp):
TGTGAAAAATGATTGAATTGAAAA
Found at i:7036676 original size:37 final size:39
Alignment explanation
Indices: 7036617--7036712 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
7036607 CGGATAGATT
* * * *
7036617 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
7036654 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
7036693 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
7036713 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:7049588 original size:46 final size:46
Alignment explanation
Indices: 7049500--7049590 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
7049490 TGTTACCTTG
* * *
7049500 ATGATGTGCTTGAGAGGAAAAGAGGAAGGATAATATAAGAGAATTA
1 ATGATGTGCTTAAGAGGAAAAGAGAAAGGATAAAATAAGAGAATTA
* * * **
7049546 ATGATGTGCTTAAGCGGAAAAGTGAAAGGGTAAAATGTGAGAATT
1 ATGATGTGCTTAAGAGGAAAAGAGAAAGGATAAAATAAGAGAATT
7049591 GAAAAGGTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.43, C:0.03, G:0.31, T:0.23
Consensus pattern (46 bp):
ATGATGTGCTTAAGAGGAAAAGAGAAAGGATAAAATAAGAGAATTA
Found at i:7051703 original size:23 final size:23
Alignment explanation
Indices: 7051673--7051719 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
7051663 AGTTTTGAAC
*
7051673 TTAAAAAATGGCAGATAAAATAG
1 TTAAAAAATGGCAGAGAAAATAG
7051696 TTAAAAAATGGCAGAGAAAATAG
1 TTAAAAAATGGCAGAGAAAATAG
7051719 T
1 T
7051720 ATGGTTGCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.55, C:0.04, G:0.19, T:0.21
Consensus pattern (23 bp):
TTAAAAAATGGCAGAGAAAATAG
Found at i:7055561 original size:35 final size:35
Alignment explanation
Indices: 7055522--7055590 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
7055512 TTGTCCACGG
7055522 TCTTTCATGAATTCCCTTGTTAACTCAGGTTCATA
1 TCTTTCATGAATTCCCTTGTTAACTCAGGTTCATA
7055557 TCTTTCATGAATTCCCTTGTTAACTCAGGTTCAT
1 TCTTTCATGAATTCCCTTGTTAACTCAGGTTCAT
7055591 CTTTATTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.22, C:0.23, G:0.12, T:0.43
Consensus pattern (35 bp):
TCTTTCATGAATTCCCTTGTTAACTCAGGTTCATA
Found at i:7071440 original size:26 final size:26
Alignment explanation
Indices: 7071389--7071440 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
7071379 TAATTTGTTA
* **
7071389 TAAAATTAATATATTTAACTTTAATT
1 TAAAATTAATAAATTTAACTACAATT
7071415 TAAAATTAAATAAATTTAA-TACAATT
1 TAAAATT-AATAAATTTAACTACAATT
7071441 ATACATTAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (26 bp):
TAAAATTAATAAATTTAACTACAATT
Found at i:7086104 original size:28 final size:28
Alignment explanation
Indices: 7086073--7086135 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
7086063 TCCCATATTA
7086073 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * *
7086101 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
7086129 ATGGGGT
1 ATGGGGT
7086136 TGATAATGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:7088049 original size:50 final size:50
Alignment explanation
Indices: 7087925--7088173 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
7087915 GATAATAACA
* * ** * *
7087925 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
7087976 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7088026 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
7088076 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAGGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
7088131 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
7088174 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:7088103 original size:100 final size:104
Alignment explanation
Indices: 7087924--7088173 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
7087914 TGATAATAAC
**
7087924 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
7087989 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCGATCTTAAGG
* *
7088026 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
7088089 TCCCAGACATGGTCTTACAGGGGACCTCTCAGGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTC--GATCTTAAGG
* *
7088131 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7088174 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCGATCTTAAGG
Found at i:7088289 original size:13 final size:13
Alignment explanation
Indices: 7088268--7088299 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7088258 GCTTGGATCA
*
7088268 TCATCAAATAAAT
1 TCATAAAATAAAT
7088281 TCATAAAATAAAT
1 TCATAAAATAAAT
7088294 TCATAA
1 TCATAA
7088300 TTTCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:7088546 original size:30 final size:30
Alignment explanation
Indices: 7088511--7088568 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7088501 CCTCGACTCT
*
7088511 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
7088541 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
7088569 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:7094252 original size:28 final size:28
Alignment explanation
Indices: 7094221--7094280 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
7094211 CCATATTAAT
7094221 GGGTATAAGAAAAGTCTCATAACTTATG
1 GGGTATAAGAAAAGTCTCATAACTTATG
* * * * *
7094249 GGGTATAGGAAGAGTTTTATAATTTATG
1 GGGTATAAGAAAAGTCTCATAACTTATG
7094277 GGGT
1 GGGT
7094281 TGATAATGAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (28 bp):
GGGTATAAGAAAAGTCTCATAACTTATG
Found at i:7094466 original size:25 final size:26
Alignment explanation
Indices: 7094438--7094514 Score: 67
Period size: 25 Copynumber: 3.1 Consensus size: 26
7094428 TTTAAAATAA
7094438 AATAGTATTTATTATATAAT-TAATT
1 AATAGTATTTATTATATAATATAATT
* *
7094463 AATA-CATATTATTA-ACAATATAATT
1 AATAGTAT-TTATTATATAATATAATT
7094488 --T-GTATTTATTATATAAAATATAATT
1 AATAGTATTTATTATAT--AATATAATT
7094513 AA
1 AA
7094515 CAATAATTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
22 6 0.15
23 4 0.10
24 6 0.15
25 24 0.60
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.47
Consensus pattern (26 bp):
AATAGTATTTATTATATAATATAATT
Found at i:7111726 original size:76 final size:76
Alignment explanation
Indices: 7111595--7111753 Score: 309
Period size: 76 Copynumber: 2.1 Consensus size: 76
7111585 CGAAGCGAAT
7111595 CAGGTAAGAACTTCTGTTTCATGGTAGTAAATTATTATTGCATTTCTAATGGACTGAGGATAAAA
1 CAGG-AAGAACTTCTGTTTCATGGTAGTAAATTATTATTGCATTTCTAATGGACTGAGGATAAAA
7111660 CTTTTCTTTCTA
65 CTTTTCTTTCTA
7111672 CAGGAAGAACTTCTGTTTCATGGTAGTAAATTATTATTGCATTTCTAATGGACTGAGGATAAAAC
1 CAGGAAGAACTTCTGTTTCATGGTAGTAAATTATTATTGCATTTCTAATGGACTGAGGATAAAAC
7111737 TTTTCTTTCTA
66 TTTTCTTTCTA
7111748 CAGGAA
1 CAGGAA
7111754 ATTATCCAAG
Statistics
Matches: 82, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
76 78 0.95
77 4 0.05
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (76 bp):
CAGGAAGAACTTCTGTTTCATGGTAGTAAATTATTATTGCATTTCTAATGGACTGAGGATAAAAC
TTTTCTTTCTA
Found at i:7114318 original size:9 final size:10
Alignment explanation
Indices: 7114307--7114368 Score: 56
Period size: 12 Copynumber: 5.9 Consensus size: 10
7114297 GGTATAAATA
7114307 AATAAATAA-
1 AATAAATAAT
*
7114316 AATGCAATAAT
1 AAT-AAATAAT
7114327 AATAATGATAAT
1 AATAA--ATAAT
7114339 AAT-AATAAT
1 AATAAATAAT
7114348 AATAAATTCAAT
1 AATAAA-T-AAT
7114360 AATAAATAA
1 AATAAATAA
7114369 AATGACAGGA
Statistics
Matches: 44, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
9 11 0.25
10 10 0.23
11 6 0.14
12 17 0.39
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (10 bp):
AATAAATAAT
Found at i:7114364 original size:3 final size:3
Alignment explanation
Indices: 7114321--7114352 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7114311 AATAAAATGC
*
7114321 AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7114353 ATTCAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7115728 original size:46 final size:44
Alignment explanation
Indices: 7115660--7116131 Score: 260
Period size: 44 Copynumber: 10.8 Consensus size: 44
7115650 GGATTATCGG
* *
7115660 CTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTAAAATT
1 CTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT--AATT
** * *
7115706 CTTCAATCTATTCCACTGTAATCTCAGGGAAATAAGACCTAA--
1 CTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTAATT
* * * ** * *
7115748 C-ACGATCTACTCTGCTGTAA-CTTCAGAGAGATAAGATCCTTCATT
1 CTTCAATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-C-TAATT
* * * *
7115793 -TT-AATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTGG
1 CTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTAAT-T
* *
7115835 CTTTAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
1 CTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT--AATT
*** * * * *
7115881 CTTTGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGA-T
1 CTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTAATT
* * * * *
7115924 -GT-GATCTTCTCTACTGTAA-CTTCAGAGAGATAAGATC-----
1 CTTCAATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCTAATT
* * * * * *
7115961 CTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGAT-TACTAT
1 CTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTAAT-T
** * * *
7116005 CTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGG
1 CTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTAAT-T
* *
7116049 CTTCAATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGAAATT
1 CTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT--AATT
*** * *
7116095 CTTTGGTCTGTTCCCCTGTAATCTCAGGGAGATAAGA
1 CTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGA
7116132 CCTGTATAAT
Statistics
Matches: 325, Mismatches: 74, Indels: 54
0.72 0.16 0.12
Matches are distributed among these distances:
38 1 0.00
39 24 0.07
40 3 0.01
41 54 0.17
42 3 0.01
43 5 0.02
44 130 0.40
45 3 0.01
46 99 0.30
47 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTAATT
Found at i:7115943 original size:175 final size:170
Alignment explanation
Indices: 7115639--7116044 Score: 571
Period size: 175 Copynumber: 2.4 Consensus size: 170
7115629 TGCAGCAACT
* *
7115639 TCAGGGAGATAGGATTA-TCGGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTAAA
1 TCAGGGAGATAGGATTACT-GGCTTTAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAA
*
7115703 ATTCTTCAATCTATTCCACTGTAATCTCAGGGAAATAAGACCTAACACGATCTACTCTGCTGTAA
65 ATTCTTCAATCTATTCCACTGTAATCTCAGGGAAATAAGACCTAACACGATCTACTCTACTGTAA
7115768 CTTCAGAGAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATC
130 CTTCAGAGAGATAAGAT-C--C--TTTAATCCGCTCCACTGTAATC
* * *
7115814 TCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAA
1 TCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAA
*** * * *** *
7115879 TTCTTTGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGATGTGATCTTCTCTACTGTAAC
66 TTCTTCAATCTATTCCACTGTAATCTCAGGGAAATAAGACCTAACACGATCTACTCTACTGTAAC
*
7115944 TTCAGAGAGATAAGATCCTTTAATCCGCTCCATTGTAATC
131 TTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATC
* ** *
7115984 TCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
1 TCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
7116045 CTGGCTTCAA
Statistics
Matches: 208, Mismatches: 22, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
170 76 0.37
172 1 0.00
174 1 0.00
175 129 0.62
176 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (170 bp):
TCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAA
TTCTTCAATCTATTCCACTGTAATCTCAGGGAAATAAGACCTAACACGATCTACTCTACTGTAAC
TTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATC
Found at i:7128720 original size:9 final size:10
Alignment explanation
Indices: 7128709--7128770 Score: 56
Period size: 12 Copynumber: 5.9 Consensus size: 10
7128699 GGTATAAATA
7128709 AATAAATAA-
1 AATAAATAAT
*
7128718 AATGCAATAAT
1 AAT-AAATAAT
7128729 AATAATGATAAT
1 AATAA--ATAAT
7128741 AAT-AATAAT
1 AATAAATAAT
7128750 AATAAATTCAAT
1 AATAAA-T-AAT
7128762 AATAAATAA
1 AATAAATAA
7128771 AATGACAGGA
Statistics
Matches: 44, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
9 11 0.25
10 10 0.23
11 6 0.14
12 17 0.39
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (10 bp):
AATAAATAAT
Found at i:7128766 original size:3 final size:3
Alignment explanation
Indices: 7128723--7128754 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7128713 AATAAAATGC
*
7128723 AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7128755 ATTCAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7132799 original size:16 final size:17
Alignment explanation
Indices: 7132763--7132797 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7132753 TCAATAATAT
7132763 AATAATCATATTTTTGA
1 AATAATCATATTTTTGA
7132780 AATAAT-ATATTATTTGA
1 AATAATCATATT-TTTGA
7132797 A
1 A
7132798 TAGATGGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.46
Consensus pattern (17 bp):
AATAATCATATTTTTGA
Found at i:7136892 original size:6 final size:6
Alignment explanation
Indices: 7136883--7136921 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
7136873 TTTTTTTTTT
*
7136883 TGTGCG TGTGCG TGTGCG TGTGCG TGTGCG TGTGTG TGT
1 TGTGCG TGTGCG TGTGCG TGTGCG TGTGCG TGTGCG TGT
7136922 TTGTGAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.00, C:0.13, G:0.49, T:0.38
Consensus pattern (6 bp):
TGTGCG
Found at i:7138864 original size:6 final size:6
Alignment explanation
Indices: 7138853--7138894 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
7138843 TGGCCCCAGC
* * *
7138853 GATGGG GATGGG GATGGG GATGGG TATGGG CATGGG CATGGG
1 GATGGG GATGGG GATGGG GATGGG GATGGG GATGGG GATGGG
7138895 TGTCATGGAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.17, C:0.05, G:0.60, T:0.19
Consensus pattern (6 bp):
GATGGG
Found at i:7142255 original size:43 final size:44
Alignment explanation
Indices: 7142194--7142282 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
7142184 ATTTACTACT
7142194 TTCATATGATAT-AAAAAAAGGGGGGGTTAATAAGAGTTAGATA
1 TTCATATGATATAAAAAAAAGGGGGGGTTAATAAGAGTTAGATA
7142237 TTCATATGATATAAAAAAAAGGGGGGGTTAATAAGAGTTAGATA
1 TTCATATGATATAAAAAAAAGGGGGGGTTAATAAGAGTTAGATA
7142281 TT
1 TT
7142283 TATTATAAGC
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 12 0.27
44 33 0.73
ACGTcount: A:0.44, C:0.02, G:0.25, T:0.29
Consensus pattern (44 bp):
TTCATATGATATAAAAAAAAGGGGGGGTTAATAAGAGTTAGATA
Found at i:7149261 original size:45 final size:45
Alignment explanation
Indices: 7149156--7149271 Score: 151
Period size: 45 Copynumber: 2.6 Consensus size: 45
7149146 ATCATACCAG
* *
7149156 AAATGAGTAAGACCATAGCTGAAAGATGCTATGGCATCATGATTC
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTC
* * *
7149201 AGACGAGTAAGACCATAGCTGAAAGACGCTATGGCATCGCGATTC
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTC
* * * *
7149246 AAATGTGTAACACCATGGTTGAAAGA
1 AAATGAGTAAGACCATAGCTGAAAGA
7149272 TACCATGGCA
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 60 1.00
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTC
Found at i:7149317 original size:46 final size:46
Alignment explanation
Indices: 7149257--7149419 Score: 254
Period size: 46 Copynumber: 3.5 Consensus size: 46
7149247 AATGTGTAAC
7149257 ACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAG
1 ACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAG
* * *
7149303 ACCATGATTAAAAGATACCGTGGCAACATGACAGGAAATGAATAAG
1 ACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAG
* *
7149349 ACCATGGTTGAAAGATACCACGGCAACATGACATGAAATGAATAAG
1 ACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAG
* * *
7149395 ACCATAGTTGAAAGACACTATGGCA
1 ACCATGGTTGAAAGATACCATGGCA
7149420 TCATTTCGAA
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 105 1.00
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.18
Consensus pattern (46 bp):
ACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAG
Found at i:7152563 original size:10 final size:10
Alignment explanation
Indices: 7152550--7152594 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
7152540 AAAATAATTT
*
7152550 AAAAATCATA
1 AAAAATTATA
7152560 AAAAATTATA
1 AAAAATTATA
**
7152570 AAAAATGGTA
1 AAAAATTATA
7152580 AAAAATTATA
1 AAAAATTATA
7152590 AAAAA
1 AAAAA
7152595 ATGGTAAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.22
Consensus pattern (10 bp):
AAAAATTATA
Found at i:7152573 original size:20 final size:20
Alignment explanation
Indices: 7152550--7152594 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
7152540 AAAATAATTT
7152550 AAAAATCATAAAAAATTATA
1 AAAAATCATAAAAAATTATA
**
7152570 AAAAATGGTAAAAAATTATA
1 AAAAATCATAAAAAATTATA
7152590 AAAAA
1 AAAAA
7152595 ATGGTAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.22
Consensus pattern (20 bp):
AAAAATCATAAAAAATTATA
Found at i:7152597 original size:21 final size:20
Alignment explanation
Indices: 7152558--7152602 Score: 81
Period size: 21 Copynumber: 2.2 Consensus size: 20
7152548 TTAAAAATCA
7152558 TAAAAAATTATAAAAAATGG
1 TAAAAAATTATAAAAAATGG
7152578 TAAAAAATTATAAAAAAATGG
1 TAAAAAATTAT-AAAAAATGG
7152599 TAAA
1 TAAA
7152603 CTATACAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (20 bp):
TAAAAAATTATAAAAAATGG
Found at i:7156803 original size:13 final size:13
Alignment explanation
Indices: 7156785--7156834 Score: 55
Period size: 13 Copynumber: 3.5 Consensus size: 13
7156775 AGGGGCACAT
7156785 GCCCGTGTGGCCA
1 GCCCGTGTGGCCA
7156798 GCCCGTGTGGCTCCCA
1 GCCCGTGTGG---CCA
*
7156814 TGGCCGTGTGGCCA
1 -GCCCGTGTGGCCA
7156828 GCCCGTG
1 GCCCGTG
7156835 GGCAATTCTG
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
13 16 0.52
14 3 0.10
16 3 0.10
17 9 0.29
ACGTcount: A:0.06, C:0.38, G:0.38, T:0.18
Consensus pattern (13 bp):
GCCCGTGTGGCCA
Found at i:7160191 original size:21 final size:21
Alignment explanation
Indices: 7160165--7160207 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
7160155 ACCAATAGTG
7160165 ATTTTCATAGAGTACTAGAGA
1 ATTTTCATAGAGTACTAGAGA
7160186 ATTTTCATAGAGTACTAGAGA
1 ATTTTCATAGAGTACTAGAGA
7160207 A
1 A
7160208 AGTAGTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
ATTTTCATAGAGTACTAGAGA
Found at i:7164369 original size:14 final size:14
Alignment explanation
Indices: 7164350--7164377 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7164340 CGATTTTTTG
7164350 ATTAAAAAAATATT
1 ATTAAAAAAATATT
7164364 ATTAAAAAAATATT
1 ATTAAAAAAATATT
7164378 TAAAAGTGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATTAAAAAAATATT
Found at i:7165675 original size:30 final size:30
Alignment explanation
Indices: 7165639--7165697 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
7165629 TTAACAAGCA
7165639 AATGCCTCTAAAATAATAAAAAAATTAACC
1 AATGCCTCTAAAATAATAAAAAAATTAACC
* *
7165669 AATGCCTTTAAAATAATAACAAAATTAAC
1 AATGCCTCTAAAATAATAAAAAAATTAAC
7165698 AATAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.56, C:0.15, G:0.03, T:0.25
Consensus pattern (30 bp):
AATGCCTCTAAAATAATAAAAAAATTAACC
Found at i:7166222 original size:21 final size:21
Alignment explanation
Indices: 7166192--7166231 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7166182 TTTAATTTTT
7166192 TTCAGAATGAAAACGTTGAAG
1 TTCAGAATGAAAACGTTGAAG
* *
7166213 TTCAGGATGAAAATGTTGA
1 TTCAGAATGAAAACGTTGA
7166232 CATTGTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (21 bp):
TTCAGAATGAAAACGTTGAAG
Found at i:7191430 original size:21 final size:21
Alignment explanation
Indices: 7191404--7191444 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
7191394 CATCATCAAC
7191404 CAAAACTTAAAAAATTCTCAT
1 CAAAACTTAAAAAATTCTCAT
7191425 CAAAACTTAAAAAATTCTCA
1 CAAAACTTAAAAAATTCTCA
7191445 GAGTACCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.54, C:0.20, G:0.00, T:0.27
Consensus pattern (21 bp):
CAAAACTTAAAAAATTCTCAT
Found at i:7193021 original size:23 final size:23
Alignment explanation
Indices: 7192994--7193039 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
7192984 CGTTCACAAA
7192994 GGTACATCTTATAACAAAATAAG
1 GGTACATCTTATAACAAAATAAG
*
7193017 GGTACATCTTATAACAGAATAAG
1 GGTACATCTTATAACAAAATAAG
7193040 CTTGAATCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (23 bp):
GGTACATCTTATAACAAAATAAG
Found at i:7205957 original size:30 final size:30
Alignment explanation
Indices: 7205923--7205982 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
7205913 TTATAAAGAT
7205923 AGCAATGGAAAGATTAAAATATATTGTTAA
1 AGCAATGGAAAGATTAAAATATATTGTTAA
*
7205953 AGCAATGGAAAGATTAAAATATGTTGTTAA
1 AGCAATGGAAAGATTAAAATATATTGTTAA
7205983 TCTATGTACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.18, T:0.30
Consensus pattern (30 bp):
AGCAATGGAAAGATTAAAATATATTGTTAA
Found at i:7207668 original size:135 final size:132
Alignment explanation
Indices: 7207431--7207914 Score: 605
Period size: 132 Copynumber: 3.7 Consensus size: 132
7207421 TCCTTGAACG
* * * * * * ** **
7207431 AACGGGAAATCGCAACCCAGCACGATAGGGCACGACTCC-CGAATTGCCAAACATCGAGTATTAC
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGC
* ** * *
7207495 CTTCGTTTTAAAGAGTTTTTAGAAAACATGAACAAAATTCTAAAGGGATAATT-GATTATTTTGA
66 CTTCGTTTTAAAGAGTTTTTAGAAGACATGAATGAAATTTTGAAGGGAT-ATTCGATTATTTTGA
7207559 GCA
130 GCA
* * *
7207562 AACGAGAAATTGTAACCCAGCACGTTAGGGCACGATTCCGCGAATTGTCAAATATCGAACATCGC
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGC
* * *
7207627 CTTTGTTTTAAAGGATTGTTTTTAGAAGACATGAATGAAATTTTGAAGAGATATTCGATCATTTT
66 CTTCGTTTTAAA-GA--GTTTTTAGAAGACATGAATGAAATTTTGAAGGGATATTCGATTATTTT
*
7207692 GAGAA
128 GAGCA
* *
7207697 AACGAGAAATTACAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGC
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGC
* * * ** *
7207762 ATTCGTTTTAAAGAATTTTTAAAAGACATGGGTGAAATTTTGAAGGGGTATTCGATTATTTTGAG
66 CTTCGTTTTAAAGAGTTTTTAGAAGACATGAATGAAATTTTGAAGGGATATTCGATTATTTTGAG
7207827 CA
131 CA
*
7207829 AACGTGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAATC-TCG
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAA-CATCG
* *
7207893 TCTTCGTTTTAAAGAATTTTTA
65 CCTTCGTTTTAAAGAGTTTTTA
7207915 AATGAATAAT
Statistics
Matches: 307, Mismatches: 40, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
131 34 0.11
132 154 0.50
133 3 0.01
134 5 0.02
135 111 0.36
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (132 bp):
AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGC
CTTCGTTTTAAAGAGTTTTTAGAAGACATGAATGAAATTTTGAAGGGATATTCGATTATTTTGAG
CA
Found at i:7209389 original size:14 final size:15
Alignment explanation
Indices: 7209370--7209399 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7209360 GAATCATAAG
7209370 ATAAAA-AAAATAGA
1 ATAAAAGAAAATAGA
7209384 ATAAAAGAAAATAGA
1 ATAAAAGAAAATAGA
7209399 A
1 A
7209400 AAGGAGACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (15 bp):
ATAAAAGAAAATAGA
Found at i:7215117 original size:28 final size:28
Alignment explanation
Indices: 7215085--7215153 Score: 72
Period size: 28 Copynumber: 2.5 Consensus size: 28
7215075 CATAATTTAA
7215085 ATATAAATTATTCAATTTATTT-TATTTT
1 ATATAAATTATTCAATTTATTTATA-TTT
* *
7215113 ATATAGAAATATT-TATTTATTTATATTT
1 ATATA-AATTATTCAATTTATTTATATTT
*
7215141 ATAT-ATTTATTCA
1 ATATAAATTATTCA
7215154 CTAACATGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
26 5 0.15
28 20 0.61
29 8 0.24
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (28 bp):
ATATAAATTATTCAATTTATTTATATTT
Found at i:7215138 original size:14 final size:14
Alignment explanation
Indices: 7215121--7215150 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7215111 TTATATAGAA
*
7215121 ATATTTATTTATTT
1 ATATTTATATATTT
7215135 ATATTTATATATTT
1 ATATTTATATATTT
7215149 AT
1 AT
7215151 TCACTAACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
ATATTTATATATTT
Found at i:7215228 original size:18 final size:18
Alignment explanation
Indices: 7215187--7215228 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7215177 ACAAGTTTCA
* *
7215187 TCCAATAAAAATAATTCT
1 TCCAAAAAAAATAATTAT
*
7215205 TACAAAAAAAATAATTAT
1 TCCAAAAAAAATAATTAT
7215223 TCCAAA
1 TCCAAA
7215229 TTTCATTTAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (18 bp):
TCCAAAAAAAATAATTAT
Found at i:7215664 original size:28 final size:28
Alignment explanation
Indices: 7215613--7215666 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
7215603 TAGAAAAAAC
* *
7215613 ATTAAGATATTAAATGCAATGAAAAGTT
1 ATTAAGACATTAAATGCAAAGAAAAGTT
7215641 ATTAAGACATTAAATG-AAGAGAAAAG
1 ATTAAGACATTAAATGCAA-AGAAAAG
7215667 GCTATTGTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 2 0.09
28 21 0.91
ACGTcount: A:0.54, C:0.04, G:0.17, T:0.26
Consensus pattern (28 bp):
ATTAAGACATTAAATGCAAAGAAAAGTT
Found at i:7218857 original size:28 final size:29
Alignment explanation
Indices: 7218826--7218903 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 29
7218816 TATTATTATT
*
7218826 TATATAAATATATAAATTA-ATTATAAAG
1 TATATAAATAAATAAATTACATTATAAAG
* * *
7218854 TATATTATTAAATTAATTACATTATAAA-
1 TATATAAATAAATAAATTACATTATAAAG
*
7218882 TATTATATTAAGAAATAAATTA
1 TA-TATA--AATAAATAAATTA
7218904 AATAAAGACA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
28 17 0.45
29 11 0.29
31 10 0.26
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (29 bp):
TATATAAATAAATAAATTACATTATAAAG
Found at i:7218903 original size:31 final size:28
Alignment explanation
Indices: 7218837--7218904 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
7218827 ATATAAATAT
**
7218837 ATAAATTAATTATAAAGTATATTATTAA
1 ATAAATTAATTATAAAGTATATTAAGAA
* *
7218865 ATTAATTACATTATAAATATTATATTAAGAA
1 ATAAATTA-ATTAT-AA-AGTATATTAAGAA
7218896 ATAAATTAA
1 ATAAATTAA
7218905 ATAAAGACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 5 0.16
30 3 0.09
31 17 0.53
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (28 bp):
ATAAATTAATTATAAAGTATATTAAGAA
Found at i:7219087 original size:16 final size:15
Alignment explanation
Indices: 7219046--7219093 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
7219036 AAATAAAAAG
7219046 AAAA-AGAAAGAAAC
1 AAAACAGAAAGAAAC
7219060 AAAACAGAAAAGAAAC
1 AAAACAG-AAAGAAAC
*
7219076 AAGAATAGAAAG-AAC
1 AA-AACAGAAAGAAAC
7219091 AAA
1 AAA
7219094 GGAACAGAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 5 0.17
15 7 0.23
16 14 0.47
17 4 0.13
ACGTcount: A:0.75, C:0.08, G:0.15, T:0.02
Consensus pattern (15 bp):
AAAACAGAAAGAAAC
Found at i:7219982 original size:23 final size:22
Alignment explanation
Indices: 7219956--7220030 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
7219946 TGAAAATGTG
7219956 TGAATTGTGAAATAATTATTGAT
1 TGAATTGTGAAA-AATTATTGAT
*
7219979 TGAA-TGTGGAAAAATGATTGAAT
1 TGAATTGT-GAAAAATTATTG-AT
* * *
7220002 TGAAAGTGTGAGAAATT-GTGAT
1 TG-AATTGTGAAAAATTATTGAT
7220024 TGAATTG
1 TGAATTG
7220031 AGAATATATG
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
21 4 0.09
22 14 0.33
23 14 0.33
24 8 0.19
25 3 0.07
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (22 bp):
TGAATTGTGAAAAATTATTGAT
Found at i:7219998 original size:22 final size:24
Alignment explanation
Indices: 7219956--7220005 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
7219946 TGAAAATGTG
*
7219956 TGAATTGTGAAATAATTATTG-AT
1 TGAATTGTGAAATAATGATTGAAT
7219979 TGAA-TGTGGAAA-AATGATTGAAT
1 TGAATTGT-GAAATAATGATTGAAT
7220002 TGAA
1 TGAA
7220006 AGTGTGAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 10 0.42
23 14 0.58
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (24 bp):
TGAATTGTGAAATAATGATTGAAT
Found at i:7220234 original size:37 final size:39
Alignment explanation
Indices: 7220175--7220270 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
7220165 CGGATAGATT
* * * *
7220175 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
7220212 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
7220251 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
7220271 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:7226258 original size:21 final size:20
Alignment explanation
Indices: 7226233--7226288 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
7226223 CTTAGATTTT
*
7226233 TATATTATTTATTTATATAAA
1 TATATTATTTAATTATA-AAA
* * *
7226254 TATATAAATTAATTATAAAG
1 TATATTATTTAATTATAAAA
*
7226274 TATATTATTAAATTA
1 TATATTATTTAATTA
7226289 ATTACATATA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
TATATTATTTAATTATAAAA
Found at i:7226283 original size:19 final size:20
Alignment explanation
Indices: 7226233--7226284 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
7226223 CTTAGATTTT
*
7226233 TATATTATTTATTTATATAAA
1 TATATTA-TTAATTATATAAA
* *
7226254 TATATAAATTAATTATA-AAG
1 TATAT-TATTAATTATATAAA
7226274 TATATTATTAA
1 TATATTATTAA
7226285 ATTAATTACA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 5 0.19
20 7 0.27
21 13 0.50
22 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
TATATTATTAATTATATAAA
Found at i:7226306 original size:24 final size:24
Alignment explanation
Indices: 7226246--7226313 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
7226236 ATTATTTATT
*
7226246 TATATAAATATATAAATTAATTATA
1 TATATAAATAT-TAAATTAATTACA
* *
7226271 AAGTAT-ATTATTAAATTAATTACA
1 TA-TATAAATATTAAATTAATTACA
*
7226295 TATATAAATATTATATTAA
1 TATATAAATATTAAATTAA
7226314 GAAATAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
23 3 0.09
24 24 0.69
25 5 0.14
26 3 0.09
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (24 bp):
TATATAAATATTAAATTAATTACA
Found at i:7227655 original size:37 final size:39
Alignment explanation
Indices: 7227596--7227691 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
7227586 CGGATAGATT
* * * *
7227596 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
7227633 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
7227672 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
7227692 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:7237232 original size:2 final size:2
Alignment explanation
Indices: 7237225--7237251 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7237215 TACAATTTCT
7237225 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7237252 TCTAGAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7237763 original size:112 final size:113
Alignment explanation
Indices: 7237547--7237775 Score: 388
Period size: 112 Copynumber: 2.0 Consensus size: 113
7237537 TTATTTCTTT
* * *
7237547 TCTTTTGTTTTGTTTGGCGGCGATGTTACTTTTCGAGCTGACTATCACCTGCATTTTTCTCCCTC
1 TCTTTTGTTTTGTTTGGCGGCGATGTTACTCTTCAAGCTGACTATCACCCGCATTTTTCTCCCTC
* * *
7237612 CCATAAACTCTCTCTTTCTTCATTTCTTTATCTCATTCACTCTATGTG
66 CCATAAACCCTCTCTTTCATCATTTCTTTATCTCATTCACACTATGTG
*
7237660 TCTTTTGTTTTGTTTGGCGGCGATGTTAGTCTTCAAGCTGACTATCACCCGCA-TTTTCTCCCTC
1 TCTTTTGTTTTGTTTGGCGGCGATGTTACTCTTCAAGCTGACTATCACCCGCATTTTTCTCCCTC
7237724 CCATAAACCCTCTCTTTCATCATTTCTTTATCTCATTCACACTATGTG
66 CCATAAACCCTCTCTTTCATCATTTCTTTATCTCATTCACACTATGTG
7237772 TCTT
1 TCTT
7237776 CTCTCTCTTC
Statistics
Matches: 109, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
112 60 0.55
113 49 0.45
ACGTcount: A:0.15, C:0.28, G:0.12, T:0.45
Consensus pattern (113 bp):
TCTTTTGTTTTGTTTGGCGGCGATGTTACTCTTCAAGCTGACTATCACCCGCATTTTTCTCCCTC
CCATAAACCCTCTCTTTCATCATTTCTTTATCTCATTCACACTATGTG
Found at i:7245959 original size:64 final size:64
Alignment explanation
Indices: 7245885--7246013 Score: 240
Period size: 64 Copynumber: 2.0 Consensus size: 64
7245875 TATATTTTAA
* *
7245885 TATTTTATTTTTGAAATGTTATGTTTTAATCACTTATCTTATCGTCTTGTTATGAAGTGGTCAC
1 TATTTTATTTTTGAAATGTTATGTTTTAATCACTTACCTAATCGTCTTGTTATGAAGTGGTCAC
7245949 TATTTTATTTTTGAAATGTTATGTTTTAATCACTTACCTAATCGTCTTGTTATGAAGTGGTCAC
1 TATTTTATTTTTGAAATGTTATGTTTTAATCACTTACCTAATCGTCTTGTTATGAAGTGGTCAC
7246013 T
1 T
7246014 CTACCGTTAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.50
Consensus pattern (64 bp):
TATTTTATTTTTGAAATGTTATGTTTTAATCACTTACCTAATCGTCTTGTTATGAAGTGGTCAC
Found at i:7258066 original size:21 final size:21
Alignment explanation
Indices: 7258042--7258086 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
7258032 AATTTTATGT
**
7258042 ATAAAATTATTTTAAATATAA
1 ATAAAATTATCATAAATATAA
7258063 ATAAAATTATCATAAATATAA
1 ATAAAATTATCATAAATATAA
7258084 ATA
1 ATA
7258087 TTTATCTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAAAATTATCATAAATATAA
Found at i:7276867 original size:30 final size:30
Alignment explanation
Indices: 7276816--7276874 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
7276806 CTTTGAGTAC
*
7276816 TTATAAATAAATATTAATAAATTTATTTAA
1 TTATAAATAAATAGTAATAAATTTATTTAA
* *
7276846 TTATAATTAAA-AGTAATTAAATTTTTTTA
1 TTATAAATAAATAGTAA-TAAATTTATTTA
7276875 TTTCTTTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (30 bp):
TTATAAATAAATAGTAATAAATTTATTTAA
Found at i:7280598 original size:9 final size:9
Alignment explanation
Indices: 7280584--7280611 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
7280574 TCTGGTTTTT
7280584 ATTTAAAAA
1 ATTTAAAAA
7280593 ATTTAAAAA
1 ATTTAAAAA
7280602 ATTTAAAAA
1 ATTTAAAAA
7280611 A
1 A
7280612 AATTTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
ATTTAAAAA
Found at i:7281967 original size:12 final size:14
Alignment explanation
Indices: 7281949--7281981 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
7281939 AAGAAAGTAA
7281949 AGAAAAAAAA-AAG
1 AGAAAAAAAAGAAG
7281962 -GAAAAAAAAGAAG
1 AGAAAAAAAAGAAG
7281975 AGAAAAA
1 AGAAAAA
7281982 CAATGTGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 9 0.50
13 3 0.17
14 6 0.33
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (14 bp):
AGAAAAAAAAGAAG
Found at i:7290508 original size:427 final size:427
Alignment explanation
Indices: 7289688--7290916 Score: 2206
Period size: 427 Copynumber: 2.9 Consensus size: 427
7289678 TTCATATGAC
* * *
7289688 AGATCAGGTCGAATTTCAGTATCCACTGTAGAAATAATAAGAAATGGATCTGATCGATATCTTCT
1 AGATCAGGTCGAATTTCAAT-TCCTCTGTAGAAATAATAAGAAAAGGATCTGATCGATATCTTCT
*
7289753 GAGCATAGAAACATGAAAAACATCATGAATCTTTTGCAATTCTGGAAGCAAAGCCAGACAATATG
65 GAGCATAGAAACATGAAAAACATCATGAATCTTTTGCAATTCTGGAAGCAAAGCCAGACGATATG
* *
7289818 TAACTGGTCCAACTCTCTCAATAATCTCATATGGCCCAATAAAATGAGAACTTAGTTTTCCTTTT
130 CAACTGGTCCAACTCTCTCAATAATCTCATATGGCCCAATAAAACGAGAACTTAGTTTTCCTTTT
* * *
7289883 CGATCGAATCTCATAATTTTCTTCCGAGGTGAAACTTTTAAAAATACCTTATCACCAACCGCGTA
195 CGACCGAATCTCATAATTTTCTTCCAAGGTGAAACTTTTAGAAATACCTTATCACCAACCGCGTA
7289948 CTCAATGTCTCTACGTTTCAGATCTGCATATGACTTCTGCCTGTCAAAAGCTGCTTTCAATCTTT
260 CTCAATGTCTCTACGTTTCAGATCTGCATATGACTTCTGCCTGTCAAAAGCTGCTTTCAATCTTT
*
7290013 CTCGAATCTTCTTAACAGTGTCTTCTGTTTCTTGAATTAATTCTGGCCCACTATTATTGCATACA
325 CTCGAATCTTCTTAACAGTGTCTTCTATTTCTTGAATTAATTCTGGCCCACTATTATTGCATACA
7290078 AATTCAGCTAACGGTAGATAACGTTCCCAACCGATTCA
390 AATTCAGCTAACGGTAGATAACGTTCCCAACCGATTCA
7290116 AGATCAGGTCGAATTTCAATTCCTCTGTAGAAATAATAAGAAAAGGATCTGATCGATATCTTCTG
1 AGATCAGGTCGAATTTCAATTCCTCTGTAGAAATAATAAGAAAAGGATCTGATCGATATCTTCTG
7290181 AGCATAGAAACATGAAAAACATCATGAATCTTTTGCAATTCTGGAAGCAAAGCCAGACGATATGC
66 AGCATAGAAACATGAAAAACATCATGAATCTTTTGCAATTCTGGAAGCAAAGCCAGACGATATGC
* * *
7290246 AATTGGTCCAACTCTATCAATAATCTCATATGGCCCAATAAAACGAGAATTTAGTTTTCCTTTTC
131 AACTGGTCCAACTCTCTCAATAATCTCATATGGCCCAATAAAACGAGAACTTAGTTTTCCTTTTC
7290311 GACCGAATCTCATAATTTTCTTCCAAGGTGAAACTTTTAGAAATACCTTATCACCAACCGCGTAC
196 GACCGAATCTCATAATTTTCTTCCAAGGTGAAACTTTTAGAAATACCTTATCACCAACCGCGTAC
7290376 TCAATGTCTCTACGTTTCAGATCTGCATATGACTTCTGCCTGTCAAAAGCTGCTTTCAATCTTTC
261 TCAATGTCTCTACGTTTCAGATCTGCATATGACTTCTGCCTGTCAAAAGCTGCTTTCAATCTTTC
* * *
7290441 TCGAATCTTCTTAATAATGTATTCTATTTCTTGAATTAATTCTGGCCCACTATTATTGCATACAA
326 TCGAATCTTCTTAACAGTGTCTTCTATTTCTTGAATTAATTCTGGCCCACTATTATTGCATACAA
7290506 ATTCAGCTAACGGTAGATAACGTTCCCAACCGATTCA
391 ATTCAGCTAACGGTAGATAACGTTCCCAACCGATTCA
* *
7290543 AGATCAGGTCTAATTTCAATTCCTCTGTAGAAATAATAAGAAAAGGATCTGATCGATATTTTCTG
1 AGATCAGGTCGAATTTCAATTCCTCTGTAGAAATAATAAGAAAAGGATCTGATCGATATCTTCTG
* *
7290608 AGCATAGAAACATGAAAAACATCATGAATTTTTTGCAATTCTGGAAGTAAAGCCAGACGATATGC
66 AGCATAGAAACATGAAAAACATCATGAATCTTTTGCAATTCTGGAAGCAAAGCCAGACGATATGC
*
7290673 AACTGGTCCAACTCTCTCAATAATCTCATATGGCCCAATAAAACGAGGACTTAGTTTTCCTTTTC
131 AACTGGTCCAACTCTCTCAATAATCTCATATGGCCCAATAAAACGAGAACTTAGTTTTCCTTTTC
* ** *
7290738 GTCCGAATCTCATAATTTTCTTCCAAGGTGAAACTTTTAGAAATACCTTATCACCAATTGCATAC
196 GACCGAATCTCATAATTTTCTTCCAAGGTGAAACTTTTAGAAATACCTTATCACCAACCGCGTAC
*
7290803 TCAATGTCTCTACGTTTCAGATCTGCATATGACTTCTACCTGTCAAAAGCTGCTTTCAATCTTTC
261 TCAATGTCTCTACGTTTCAGATCTGCATATGACTTCTGCCTGTCAAAAGCTGCTTTCAATCTTTC
*
7290868 TCGAATCTTCTTAACAGTATCTTCTATTTCTTGAATTAATTCTGGCCCA
326 TCGAATCTTCTTAACAGTGTCTTCTATTTCTTGAATTAATTCTGGCCCA
7290917 ATCATTTTCT
Statistics
Matches: 768, Mismatches: 33, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
427 749 0.98
428 19 0.02
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.33
Consensus pattern (427 bp):
AGATCAGGTCGAATTTCAATTCCTCTGTAGAAATAATAAGAAAAGGATCTGATCGATATCTTCTG
AGCATAGAAACATGAAAAACATCATGAATCTTTTGCAATTCTGGAAGCAAAGCCAGACGATATGC
AACTGGTCCAACTCTCTCAATAATCTCATATGGCCCAATAAAACGAGAACTTAGTTTTCCTTTTC
GACCGAATCTCATAATTTTCTTCCAAGGTGAAACTTTTAGAAATACCTTATCACCAACCGCGTAC
TCAATGTCTCTACGTTTCAGATCTGCATATGACTTCTGCCTGTCAAAAGCTGCTTTCAATCTTTC
TCGAATCTTCTTAACAGTGTCTTCTATTTCTTGAATTAATTCTGGCCCACTATTATTGCATACAA
ATTCAGCTAACGGTAGATAACGTTCCCAACCGATTCA
Found at i:7293778 original size:75 final size:75
Alignment explanation
Indices: 7293655--7293804 Score: 255
Period size: 75 Copynumber: 2.0 Consensus size: 75
7293645 TAACATAATA
7293655 ATGTGACGATCCTAGATCTATTAAAGCATAAACGAGTTCTGAGTACAATAAAAATATACCAGTCA
1 ATGTGACGATCCTAGATCTATTAAAGCATAAACGAGTTCTGAGTACAATAAAAATATACCAGTCA
7293720 CCATATTGTG
66 CCATATTGTG
* * * * *
7293730 ATGTGATGATCTTGGATCTATTAAAGCATAAACGGGTTCTGAGTACAATAAAAATATACCCGTCA
1 ATGTGACGATCCTAGATCTATTAAAGCATAAACGAGTTCTGAGTACAATAAAAATATACCAGTCA
7293795 CCATATTGTG
66 CCATATTGTG
7293805 TACATCTCCT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (75 bp):
ATGTGACGATCCTAGATCTATTAAAGCATAAACGAGTTCTGAGTACAATAAAAATATACCAGTCA
CCATATTGTG
Found at i:7295587 original size:47 final size:47
Alignment explanation
Indices: 7295516--7295607 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 47
7295506 CCAACACACC
* * *
7295516 AGTACGGCACTCAGTGCCGCATCGGCTT-TACCGAAGTAAGTAGTAGT
1 AGTACGGCACTCAGTACCGCATCGGATTAAACCGAAGTAA-TAGTAGT
* * *
7295563 AGTACGGTACTTAGTACCTCATCGGATTAAACCGAAGTAATAGTA
1 AGTACGGCACTCAGTACCGCATCGGATTAAACCGAAGTAATAGTA
7295608 ACAGTATGAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
47 28 0.74
48 10 0.26
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (47 bp):
AGTACGGCACTCAGTACCGCATCGGATTAAACCGAAGTAATAGTAGT
Found at i:7296533 original size:17 final size:17
Alignment explanation
Indices: 7296501--7296577 Score: 52
Period size: 17 Copynumber: 4.5 Consensus size: 17
7296491 AAATTTCTTA
*
7296501 TTTTCTTTTCTCTTTTTC
1 TTTTC-TTTCTGTTTTTC
7296519 TTTTCTTTCTGTTTTGTC
1 TTTTCTTTCTGTTTT-TC
** * *
7296537 --CCCTGTTCTGTTTCTA
1 TTTTCT-TTCTGTTTTTC
*
7296553 TTTTCTTTCTTTTTTTC
1 TTTTCTTTCTGTTTTTC
7296570 -TTTCTTTC
1 TTTTCTTTC
7296578 GTTACTTTAT
Statistics
Matches: 45, Mismatches: 10, Indels: 10
0.69 0.15 0.15
Matches are distributed among these distances:
16 11 0.24
17 25 0.56
18 9 0.20
ACGTcount: A:0.01, C:0.22, G:0.05, T:0.71
Consensus pattern (17 bp):
TTTTCTTTCTGTTTTTC
Found at i:7296594 original size:3 final size:3
Alignment explanation
Indices: 7296586--7296610 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7296576 TCGTTACTTT
7296586 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
7296611 AACATAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7299129 original size:17 final size:16
Alignment explanation
Indices: 7299109--7299147 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
7299099 AAACCCAATT
7299109 CAATATTATAATTCCAA
1 CAATATT-TAATTCCAA
*
7299126 CAATAATTTATTTCCAA
1 CAAT-ATTTAATTCCAA
7299143 CAATA
1 CAATA
7299148 GAATAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 16 0.80
18 3 0.15
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (16 bp):
CAATATTTAATTCCAA
Found at i:7302917 original size:17 final size:18
Alignment explanation
Indices: 7302887--7302932 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
7302877 ATTTAAATTA
7302887 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
7302905 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
7302921 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
7302933 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:7303256 original size:27 final size:25
Alignment explanation
Indices: 7303202--7303256 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
7303192 CAGATGGCCC
* **
7303202 AAAGTAAAAAAATCTAAATATTTTT
1 AAAGTAAAAAAATCTAAATAATCCT
7303227 AAAGTAAAAAAATCTAGATATAATCCT
1 AAAGTAAAAAAATCTA-A-ATAATCCT
7303254 AAA
1 AAA
7303257 AAAAGGCACC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 16 0.64
26 1 0.04
27 8 0.32
ACGTcount: A:0.58, C:0.07, G:0.05, T:0.29
Consensus pattern (25 bp):
AAAGTAAAAAAATCTAAATAATCCT
Found at i:7331392 original size:15 final size:14
Alignment explanation
Indices: 7331368--7331403 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 14
7331358 ATTTGTATTT
7331368 TTTTTCTTTTTCTC
1 TTTTTCTTTTTCTC
7331382 TTTTTCATTTTTCTC
1 TTTTTC-TTTTTCTC
7331397 TGTTTTC
1 T-TTTTC
7331404 GGCTATAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
15 9 0.45
16 5 0.25
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.75
Consensus pattern (14 bp):
TTTTTCTTTTTCTC
Found at i:7333232 original size:24 final size:27
Alignment explanation
Indices: 7333205--7333258 Score: 69
Period size: 24 Copynumber: 2.1 Consensus size: 27
7333195 CATTTTTCCA
7333205 AATTTCACCCAA-TC-TTAATTT-GAT
1 AATTTCACCCAATTCATTAATTTAGAT
**
7333229 AATTTCATTCAATTCATTAATTTAGAT
1 AATTTCACCCAATTCATTAATTTAGAT
7333256 AAT
1 AAT
7333259 AAAACAATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 10 0.40
25 2 0.08
26 7 0.28
27 6 0.24
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.44
Consensus pattern (27 bp):
AATTTCACCCAATTCATTAATTTAGAT
Found at i:7334870 original size:29 final size:29
Alignment explanation
Indices: 7334824--7334882 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
7334814 TTGTCTTTTC
*
7334824 TTAATTTATTTCAAAATATAATAATATAA
1 TTAATTTATTTCAAAATATAATAAAATAA
*
7334853 TTAATTTAATTT-ATAATATAATAAAATAA
1 TTAATTT-ATTTCAAAATATAATAAAATAA
7334882 T
1 T
7334883 AACATTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 23 0.85
30 4 0.15
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (29 bp):
TTAATTTATTTCAAAATATAATAAAATAA
Found at i:7335068 original size:21 final size:21
Alignment explanation
Indices: 7335042--7335084 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
7335032 TAATCCTTTT
7335042 TCCTAATCACTCTTAATTAAG
1 TCCTAATCACTCTTAATTAAG
7335063 TCCTAATCACTCTTAATTAAG
1 TCCTAATCACTCTTAATTAAG
7335084 T
1 T
7335085 TAAATTCACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.40
Consensus pattern (21 bp):
TCCTAATCACTCTTAATTAAG
Found at i:7339337 original size:18 final size:18
Alignment explanation
Indices: 7339303--7339338 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7339293 GATTTTTTTA
**
7339303 GGTTTTATATATTATTAT
1 GGTTTTATATAAAATTAT
7339321 GGTTTTATATAAAATTAT
1 GGTTTTATATAAAATTAT
7339339 TATAATTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (18 bp):
GGTTTTATATAAAATTAT
Found at i:7339380 original size:21 final size:20
Alignment explanation
Indices: 7339303--7339381 Score: 67
Period size: 21 Copynumber: 4.0 Consensus size: 20
7339293 GATTTTTTTA
7339303 GGTTTTATA-T-ATTATTAT
1 GGTTTTATATTAATTATTAT
*
7339321 GGTTTTATATAAAATTATTAT
1 GGTTTTATAT-TAATTATTAT
** *
7339342 AATTATTA-ATTAA-CATTAT
1 GGTT-TTATATTAATTATTAT
7339361 GGTTTTATATTAGATTATTAT
1 GGTTTTATATTA-ATTATTAT
7339382 TATTAGCATT
Statistics
Matches: 46, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
18 12 0.26
19 11 0.24
20 3 0.07
21 17 0.37
22 3 0.07
ACGTcount: A:0.35, C:0.01, G:0.09, T:0.54
Consensus pattern (20 bp):
GGTTTTATATTAATTATTAT
Found at i:7339394 original size:15 final size:14
Alignment explanation
Indices: 7339368--7339398 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
7339358 TATGGTTTTA
7339368 TATTAGATTATTAT
1 TATTAGATTATTAT
7339382 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
7339397 TA
1 TA
7339399 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:7339794 original size:12 final size:12
Alignment explanation
Indices: 7339777--7339807 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7339767 GAAGCAGGGG
7339777 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
7339789 AGAAAAAGGGAA
1 AGAAAAAGAGAA
7339801 AGAAAAA
1 AGAAAAA
7339808 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:7342436 original size:33 final size:32
Alignment explanation
Indices: 7342362--7342479 Score: 94
Period size: 33 Copynumber: 3.6 Consensus size: 32
7342352 ATGAACTTGA
* ** * **
7342362 GCCGAGAGGAGTAGAATATGGAGGTGAATATAG
1 GCCG-GAGGAGTAGAGTACAGAGGTGGATACGG
* *
7342395 GCCGGGAGGAGTAGAGTACGGCGGTGGATAC-G
1 GCC-GGAGGAGTAGAGTACAGAGGTGGATACGG
* *
7342427 GCTCTGGAGGAGTTGAGTACATAGGTGGATACGG
1 GC-C-GGAGGAGTAGAGTACAGAGGTGGATACGG
7342461 GCCGGAAGGAGTAGAGTAC
1 GCCGG-AGGAGTAGAGTAC
7342480 TGAGATAAAT
Statistics
Matches: 70, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
32 5 0.07
33 61 0.87
34 4 0.06
ACGTcount: A:0.28, C:0.12, G:0.43, T:0.17
Consensus pattern (32 bp):
GCCGGAGGAGTAGAGTACAGAGGTGGATACGG
Found at i:7344528 original size:22 final size:22
Alignment explanation
Indices: 7344494--7344557 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
7344484 TCAACATTTT
*
7344494 AATAAATCA-ATAAAAATTATCA
1 AATAAAT-ATATAAAAATTATAA
*
7344516 AATAAATATATAATAA-TATAA
1 AATAAATATATAAAAATTATAA
*
7344537 AATTACATTATATAAAAATTA
1 AA-TA-AATATATAAAAATTA
7344558 CATTAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 15 0.44
23 10 0.29
24 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATATATAAAAATTATAA
Found at i:7344551 original size:15 final size:16
Alignment explanation
Indices: 7344531--7344562 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7344521 ATATATAATA
7344531 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
7344546 ATATAAAAATTACATT
1 ATATAAAAATTACATT
7344562 A
1 A
7344563 AAAAATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:7344917 original size:112 final size:113
Alignment explanation
Indices: 7344620--7345062 Score: 678
Period size: 114 Copynumber: 3.9 Consensus size: 113
7344610 ATACTAACAC
* * * ** *
7344620 AAAATAACTATAAAATTATTTTTTT-GAATGCATTACTAAAAAAAAATCACAATACATTAATACA
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACT--AAAAAAATCACAATACACTAAT--A
7344684 CACTAAACCACTAAACACTAACAA--TATATAACCTAATCTTAAATTACTAAT
62 -ACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
7344735 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACT
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATA-ACT
7344800 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
65 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* * *
7344849 AAAATATCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTACAATACGCTAAT-ACTA
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATAACTA
7344913 AACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
66 AACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
*
7344961 AAAATAGCTATAAAATTATTTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACAC
1 AAAATAGCTATAAAAATA-TTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATA-AC
* *
7345026 TAAACTACTAAACACTAACAATTTATATAACCAAATC
64 TAAACCACTAAACACTAACAATTTATATAACCTAATC
7345063 AACTATAAAA
Statistics
Matches: 307, Mismatches: 15, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
112 93 0.30
113 40 0.13
114 105 0.34
115 60 0.20
116 9 0.03
ACGTcount: A:0.51, C:0.16, G:0.01, T:0.32
Consensus pattern (113 bp):
AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATAACTA
AACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
Found at i:7345136 original size:92 final size:94
Alignment explanation
Indices: 7344968--7345141 Score: 241
Period size: 97 Copynumber: 1.8 Consensus size: 94
7344958 AATAAAATAG
7344968 CTATAAAATTATTTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACTA
1 CTATAAAATTATTTTTTTTAAAATATATTACTAAAAAAATCACAATACAC--ATACACT-AACTA
7345033 CTAAACACTAACAATTTATATAACCAAATCAA
63 CTAAACACTAACAATTTATATAACCAAATCAA
* *
7345065 CTATAAAATTATTTTTTTTAAAAATATATTATTACTAAAAAATCGCAATACAC-TA-A-T-AC-A
1 CTATAAAATTATTTTTTTT-AAAATATATTACTA--AAAAAATCACAATACACATACACTAACTA
7345125 CTAAACACTAACAATTT
63 CTAAACACTAACAATTT
7345142 GTAACCTAAT
Statistics
Matches: 72, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
92 18 0.25
93 2 0.03
95 1 0.01
96 1 0.01
97 21 0.29
98 13 0.18
100 16 0.22
ACGTcount: A:0.50, C:0.16, G:0.01, T:0.34
Consensus pattern (94 bp):
CTATAAAATTATTTTTTTTAAAATATATTACTAAAAAAATCACAATACACATACACTAACTACTA
AACACTAACAATTTATATAACCAAATCAA
Found at i:7345342 original size:3 final size:3
Alignment explanation
Indices: 7345336--7345374 Score: 51
Period size: 3 Copynumber: 12.3 Consensus size: 3
7345326 TACCTTTTTT
*
7345336 TTC TTC TTC TTC TTTC TTC TTCC TTC TTC TTC TCC TTC T
1 TTC TTC TTC TTC -TTC TTC TT-C TTC TTC TTC TTC TTC T
7345375 CCTTTCTCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 26 0.81
4 6 0.19
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:7345394 original size:29 final size:31
Alignment explanation
Indices: 7345328--7345394 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 31
7345318 TAATACATTA
* *
7345328 CCTTT-TTT-TTCTTCTTCTTCTTTCTTCTT
1 CCTTTCTTTCTTCTCCTTCTCCTTTCTTCTT
7345357 CC-TTC-TTCTTCTCCTTCTCCTTTC-TC-T
1 CCTTTCTTTCTTCTCCTTCTCCTTTCTTCTT
7345384 CCTTTCTTTCT
1 CCTTTCTTTCT
7345395 CACAGTCGGT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
27 3 0.09
28 9 0.28
29 20 0.62
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (31 bp):
CCTTTCTTTCTTCTCCTTCTCCTTTCTTCTT
Found at i:7345395 original size:13 final size:14
Alignment explanation
Indices: 7345335--7345394 Score: 56
Period size: 13 Copynumber: 4.4 Consensus size: 14
7345325 TTACCTTTTT
*
7345335 TTTCTTCTTC-TTC
1 TTTCTTCTCCTTTC
7345348 TTTCTTCTTCC-TTC
1 TTTCTTC-TCCTTTC
7345362 -TTCTTCTCCTTCTCC
1 TTTCTTCTCCTT-T-C
7345377 TTTC-TCTCCTTTC
1 TTTCTTCTCCTTTC
7345390 TTTCT
1 TTTCT
7345395 CACAGTCGGT
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
12 3 0.08
13 19 0.47
14 7 0.17
15 8 0.20
16 3 0.08
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTCTTCTCCTTTC
Found at i:7346155 original size:130 final size:131
Alignment explanation
Indices: 7345986--7346241 Score: 379
Period size: 131 Copynumber: 2.0 Consensus size: 131
7345976 CAATTATTCA
* * * *
7345986 TTTAAAAATTCTTTAAAACGAAGGCAATACTTGATGTTTGGCAATT-CGAGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACAAAGGCAATACTCGATGTTTGGCAATTACGAGAATCGTGCCCTATC
* *
7346050 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAACAATCAAATATTCCTTTGAAATTTTACTCATGT
66 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAACAATCAAATATCCCTTTGAAATTTCACTCATGT
7346115 C
131 C
* *
7346116 TTTAAAAACTCTTCAAAACAAAGGTAATACTCGATGTTTGGCAATTAGGAGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACAAAGGCAATACTCGATGTTTGGCAATTACGAGAATCGTGCCCTATC
* * * ** *
7346181 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATTGAATATCCCTTTGGAATTTCACTC
66 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAACAATCAAATATCCCTTTGAAATTTCACTC
7346242 GTGTTTCCTA
Statistics
Matches: 111, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
130 41 0.37
131 70 0.63
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (131 bp):
TTTAAAAACTCTTCAAAACAAAGGCAATACTCGATGTTTGGCAATTACGAGAATCGTGCCCTATC
GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAACAATCAAATATCCCTTTGAAATTTCACTCATGT
C
Found at i:7349985 original size:25 final size:25
Alignment explanation
Indices: 7349951--7350000 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
7349941 ATACCCAATG
7349951 AAGTCAACTGAAAAACTGTTGTTTT
1 AAGTCAACTGAAAAACTGTTGTTTT
*
7349976 AAGTCAACTGAAAACCTGTTGTTTT
1 AAGTCAACTGAAAAACTGTTGTTTT
7350001 CTTAAAAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (25 bp):
AAGTCAACTGAAAAACTGTTGTTTT
Found at i:7353239 original size:3 final size:3
Alignment explanation
Indices: 7353233--7353291 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
7353223 AAAATAATAA
7353233 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
7353281 TAG TAG TAG TA
1 TAG TAG TAG TA
7353292 ACAACAGTGG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:7356889 original size:26 final size:27
Alignment explanation
Indices: 7356844--7356919 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 27
7356834 TCAATTTAAC
* * *
7356844 CCTAGGGGTATTTCAATAATTTTGCA-
1 CCTAGGGGTATTACAGTAATTTTCCAG
*
7356870 CCTAGGGGTATAACAGTAATTTTCCATG
1 CCTAGGGGTATTACAGTAATTTTCCA-G
* *
7356898 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATTACAGTAATTT
7356920 AGCTATTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.54
28 19 0.46
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (27 bp):
CCTAGGGGTATTACAGTAATTTTCCAG
Found at i:7358404 original size:26 final size:26
Alignment explanation
Indices: 7358368--7358423 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
7358358 TGAAATTCCA
*
7358368 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
7358394 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
7358420 ATCA
1 ATCA
7358424 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Done.