Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 220 of 352
Found at i:72440518 original size:28 final size:28
Alignment explanation
Indices: 72440436--72440521 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
72440426 GTGTGCATGA
*
72440436 ATATGAATGTGACTGGGCCTAATGGGCC
1 ATATGAATGTGAATGGGCCTAATGGGCC
* *
72440464 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-ATGGGCCTAATGGGCC
* *
72440493 ATATGAATATGAATGGGCTTAATGGGCC
1 ATATGAATGTGAATGGGCCTAATGGGCC
72440521 A
1 A
72440522 GATACATGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 26 0.51
29 25 0.49
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGAATGGGCCTAATGGGCC
Found at i:72444479 original size:30 final size:30
Alignment explanation
Indices: 72444445--72444505 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72444435 TTCTTAACTC
72444445 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * * *
72444475 AAACTTTTGCATATTTATACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
72444505 A
1 A
72444506 GGCTCTGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:72447597 original size:28 final size:29
Alignment explanation
Indices: 72447539--72447603 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 29
72447529 GGCCTACTCT
* *
72447539 CATTCGTATGGCCCATTAGGCCCAAATCA
1 CATTCATATGACCCATTAGGCCCAAATCA
* *
72447568 CATTCATATGACCCA-TCGGCCCCAATCA
1 CATTCATATGACCCATTAGGCCCAAATCA
72447596 CATTCATA
1 CATTCATA
72447604 GTCATGCAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 19 0.59
29 13 0.41
ACGTcount: A:0.29, C:0.34, G:0.12, T:0.25
Consensus pattern (29 bp):
CATTCATATGACCCATTAGGCCCAAATCA
Found at i:72452287 original size:28 final size:28
Alignment explanation
Indices: 72452234--72452340 Score: 121
Period size: 28 Copynumber: 3.8 Consensus size: 28
72452224 ATAAATGCAA
* * *
72452234 CCCATTAGGCCCACTCTCATTCATATAG
1 CCCATTAGGCCCAATCACATTCATATGG
72452262 CCCATTAGGCCCAAATCACATT-ATATGG
1 CCCATTAGGCCC-AATCACATTCATATGG
* *
72452290 CCCA-TCGGCCCCAATCATATTCATATGG
1 CCCATTAGG-CCCAATCACATTCATATGG
72452318 CCCATT-GGCTCCAATCACATTCA
1 CCCATTAGGC-CCAATCACATTCA
72452341 GAGTCATGCA
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
27 12 0.18
28 48 0.71
29 8 0.12
ACGTcount: A:0.27, C:0.35, G:0.12, T:0.26
Consensus pattern (28 bp):
CCCATTAGGCCCAATCACATTCATATGG
Found at i:72453328 original size:23 final size:23
Alignment explanation
Indices: 72453289--72453333 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
72453279 CAACACAAAA
*
72453289 AAAAGAAATGAGGAA-TTCGGCT
1 AAAAGAAATGAGCAATTTCGGCT
*
72453311 AAAAGAAGTGAAGCAATTTCGGC
1 AAAAGAAATG-AGCAATTTCGGC
72453334 ATTACCCTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.44, C:0.11, G:0.27, T:0.18
Consensus pattern (23 bp):
AAAAGAAATGAGCAATTTCGGCT
Found at i:72457005 original size:29 final size:29
Alignment explanation
Indices: 72456962--72457054 Score: 118
Period size: 28 Copynumber: 3.3 Consensus size: 29
72456952 GGCCCACTCT
* *
72456962 CATTCATATGACCCATTAGGCCCAAAACA
1 CATTCATATGGCCCATTAGGCCCAAATCA
* *
72456991 CATTCATATGGCCCATCA-GCCCTAATCA
1 CATTCATATGGCCCATTAGGCCCAAATCA
* *
72457019 CATTCATATGGCCCA-TCGGCCCCAATCA
1 CATTCATATGGCCCATTAGGCCCAAATCA
72457047 CATTCATA
1 CATTCATA
72457055 GTCATGCAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
28 40 0.71
29 16 0.29
ACGTcount: A:0.31, C:0.34, G:0.11, T:0.24
Consensus pattern (29 bp):
CATTCATATGGCCCATTAGGCCCAAATCA
Found at i:72464762 original size:46 final size:46
Alignment explanation
Indices: 72464712--72465022 Score: 274
Period size: 46 Copynumber: 6.7 Consensus size: 46
72464702 TGAGCATCCA
* *
72464712 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
* * * * * *
72464758 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCATCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCCG
* * ** *
72464805 AACTCGTTTAGTTGAGTCTGAGTTCACTTATGGATGTGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
* * *
72464851 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
* * * * *
72464897 AACTCTTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCCG
* *
72464944 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
* * *
72464990 AGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72465023 GCGGGTTACA
Statistics
Matches: 210, Mismatches: 41, Indels: 28
0.75 0.15 0.10
Matches are distributed among these distances:
43 10 0.05
45 6 0.03
46 125 0.60
47 53 0.25
48 6 0.03
50 10 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
Found at i:72464864 original size:93 final size:93
Alignment explanation
Indices: 72464705--72464875 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
72464695 GGATGGTTGA
* * *
72464705 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
72464770 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * ** *
72464798 GCATCCAAACTCGTTTAGTTGAGTCTGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
72464863 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
72464876 ACTTATGGAT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:72464939 original size:139 final size:139
Alignment explanation
Indices: 72464714--72465022 Score: 528
Period size: 139 Copynumber: 2.2 Consensus size: 139
72464704 AGCATCCAAA
*
72464714 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGTTGAGTCCGA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAGTCCGA
* * *
72464779 GTTCGTGAAATGTAACTAGGCATCCAAACTCGTTTAGTTGAGTCTGAGTTCACTTATGGATGTGA
66 GTTCGTGAAATGTAACTAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
72464844 ACGCCCGAG
131 ACGCCCGAG
* *
72464853 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCTTTGAGTTGAGTCCGA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAGTCCGA
* *
72464918 GTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
66 GTTCGTGAAATGTAACTAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
72464983 ACGCCCGAG
131 ACGCCCGAG
* *
72464992 CTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72465023 GCGGGTTACA
Statistics
Matches: 160, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
139 160 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (139 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAGTCCGA
GTTCGTGAAATGTAACTAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
ACGCCCGAG
Found at i:72473780 original size:50 final size:49
Alignment explanation
Indices: 72473660--72473935 Score: 182
Period size: 46 Copynumber: 5.8 Consensus size: 49
72473650 TAAGGTGCCA
* *
72473660 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATATTCGAGGCTG
* * * *
72473709 ATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCACATATTTG-TGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTAT--CATATTCGAGGCTG
* * * *
72473759 ATGCCATGTCCCAAACATGGTCTTACACT-GAC-A-CAT-CTC-ATAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTATCATATTCGA-GGCTG
* * * * ** *
72473805 ATG-CATGTCCCAGACAT-GTCTTACATTGGCTAACGTCCT-GAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATATTCGAGGCTG
* * * * **
72473851 ATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACTCGT-CTCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCATATTCGAGGCTG
* * *
72473897 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATA
72473936 AGGTGGCTGA
Statistics
Matches: 184, Mismatches: 27, Indels: 32
0.76 0.11 0.13
Matches are distributed among these distances:
44 10 0.05
45 19 0.10
46 53 0.29
47 16 0.09
48 15 0.08
49 33 0.18
50 32 0.17
51 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATATTCGAGGCTG
Found at i:72481476 original size:46 final size:46
Alignment explanation
Indices: 72481426--72481601 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
72481416 TGTTTGGGCA
72481426 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
72481472 TCCGAACTCGTTGAGTTGAGTTCAAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
72481517 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72481565 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72481602 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.57
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72481560 original size:93 final size:93
Alignment explanation
Indices: 72481422--72481594 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
72481412 AGGATGTTTG
* * *
72481422 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
*
72481487 TTGAGTTCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* *
72481515 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
*
72481580 TTGAGTCCGAGTTCG
66 TTGAGTCCAAGTTCG
72481595 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:72490536 original size:39 final size:39
Alignment explanation
Indices: 72490493--72490764 Score: 418
Period size: 39 Copynumber: 7.0 Consensus size: 39
72490483 ATAATATTAT
* * *
72490493 CAGCACAAAGCCTACGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
72490532 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * **
72490571 CAGCACAAAGCCTGCGGGACTTTGGCCTAGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
72490610 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
72490649 CAGCACGAAGCCTGCGGGACTTTGGCCCGTATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
72490688 TAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
72490727 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
72490765 TCAGTGTCTT
Statistics
Matches: 211, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 211 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:72496424 original size:39 final size:39
Alignment explanation
Indices: 72496365--72496630 Score: 400
Period size: 39 Copynumber: 7.0 Consensus size: 39
72496355 ATTATATTAT
* * * *
72496365 CAGCACAAAGCCTGCAGGACTTTAACTCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
72496404 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
72496443 CAGCACGAAGCCTGCGGGACTTT-GGCCGGATACATTT-
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
72496480 -AGCACGAAGCCTGC-GGACTTTAGCCCGGAT--ATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
72496515 CAGCACGAAGCCTGCGGGACTTTAGCCCAGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
72496554 CAGCACGAAGCCTGCGGGACTTTAGCTCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
72496593 CAGCACGAAGCGTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
72496631 TCAGTGTCTT
Statistics
Matches: 208, Mismatches: 13, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
34 4 0.02
35 7 0.03
36 35 0.17
37 15 0.07
38 13 0.06
39 134 0.64
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:72498371 original size:81 final size:80
Alignment explanation
Indices: 72498238--72498459 Score: 349
Period size: 81 Copynumber: 2.7 Consensus size: 80
72498228 AAACCAAGTA
* * *
72498238 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
72498301 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
*
72498317 CCTTCGGGACTTAGCCCGGATAGTAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
72498382 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
72498398 CCTTCGGGACTTAGCCCGGTTATCATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG--AT-ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
72498460 TTATCATCCG
Statistics
Matches: 132, Mismatches: 5, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
79 13 0.10
80 8 0.06
81 72 0.55
83 38 0.29
84 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:72498466 original size:43 final size:40
Alignment explanation
Indices: 72498238--72498459 Score: 349
Period size: 40 Copynumber: 5.5 Consensus size: 40
72498228 AAACCAAGTA
* * *
72498238 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
72498277 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72498317 CCTTCGGGACTTAGCCCGGATAGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
72498358 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72498398 CCTTCGGGACTTAGCCCGGTTATCATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG--AT-ATAGTAACTCGCACAAATG
72498441 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72498460 TTATCATCCG
Statistics
Matches: 172, Mismatches: 5, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
39 14 0.08
40 79 0.46
41 39 0.23
42 2 0.01
43 38 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72506501 original size:40 final size:40
Alignment explanation
Indices: 72506431--72506647 Score: 330
Period size: 40 Copynumber: 5.4 Consensus size: 40
72506421 AAACCAAGTA
* * *
72506431 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
72506470 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72506510 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72506550 CCTTCGAGACTTAGCCCGGACATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72506590 CCTTCGGGACTTAGCCCGGTTATCATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG--AT-ATAGTAACTCGCACAAATG
72506633 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
72506648 TCGGTTATCA
Statistics
Matches: 164, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 14 0.09
40 116 0.71
42 1 0.01
43 33 0.20
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72515323 original size:48 final size:48
Alignment explanation
Indices: 72515199--72515333 Score: 148
Period size: 48 Copynumber: 2.8 Consensus size: 48
72515189 TAGGGTTATG
* * *
72515199 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGAATCATTA
1 TGTGATCCCAAGTAAGACCATGTCTGGGACATGGCATTGGAATCATCA
* * *
72515247 TGAGATCCCATA-TAAGACCATGTCTGGGACATGACATTGGTATCGA-CA
1 TGTGATCCCA-AGTAAGACCATGTCTGGGACATGGCATTGGAATC-ATCA
* * * *
72515295 TGTGATCCCAAGTAAGACAATATATGGGATATGGCATTG
1 TGTGATCCCAAGTAAGACCATGTCTGGGACATGGCATTG
72515334 ACATCGATAT
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
47 1 0.01
48 70 0.97
49 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (48 bp):
TGTGATCCCAAGTAAGACCATGTCTGGGACATGGCATTGGAATCATCA
Found at i:72523084 original size:48 final size:49
Alignment explanation
Indices: 72522972--72523111 Score: 140
Period size: 48 Copynumber: 2.9 Consensus size: 49
72522962 TAGGGTTATG
* * * * * * *
72522972 TGTGATCCCAAGTAAGACTATGTTTGGGACATGGCTTTGGAAT-TATTA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAA
* *
72523020 TGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGA-AA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAA
* * * * *
72523068 TGTGATCTCATGTAAGAGCATATCTGGGATATGGCATTGACATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
72523112 AATATGAGAC
Statistics
Matches: 75, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
48 74 0.99
49 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAA
Found at i:72523130 original size:48 final size:48
Alignment explanation
Indices: 72523019--72523135 Score: 130
Period size: 48 Copynumber: 2.4 Consensus size: 48
72523009 TGGAATTATT
* * * *
72523019 ATGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGAA
1 ATGAGATCTCATGTAAGACCATATCTGGGACATGGCATTGACATCGAA
* * *
72523067 ATGTGATCTCATGTAAGAGCATATCTGGGATATGGCATTGACATC-AA
1 ATGAGATCTCATGTAAGACCATATCTGGGACATGGCATTGACATCGAA
*
72523114 TATGAGA-CATCGTGTAAGACCA
1 -ATGAGATC-TCATGTAAGACCA
72523136 CAGCTAGGCT
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
47 3 0.05
48 54 0.95
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (48 bp):
ATGAGATCTCATGTAAGACCATATCTGGGACATGGCATTGACATCGAA
Found at i:72543795 original size:16 final size:16
Alignment explanation
Indices: 72543774--72543805 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
72543764 GTTGTAACGC
72543774 CCCAAAAATCTCGAAA
1 CCCAAAAATCTCGAAA
*
72543790 CCCAAAAATCTTGAAA
1 CCCAAAAATCTCGAAA
72543806 TCTCAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.28, G:0.06, T:0.16
Consensus pattern (16 bp):
CCCAAAAATCTCGAAA
Found at i:72545058 original size:16 final size:16
Alignment explanation
Indices: 72545016--72545058 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
72545006 GTAGATCGGT
* *
72545016 AAAAGTCAAAATGCTG
1 AAAAGCCAAAATACTG
* *
72545032 AAAAACTAAAATACTG
1 AAAAGCCAAAATACTG
72545048 AAAAGCCAAAA
1 AAAAGCCAAAA
72545059 GTTTGGCTAC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.60, C:0.14, G:0.12, T:0.14
Consensus pattern (16 bp):
AAAAGCCAAAATACTG
Found at i:72545311 original size:29 final size:29
Alignment explanation
Indices: 72545269--72545451 Score: 269
Period size: 29 Copynumber: 6.3 Consensus size: 29
72545259 GAAAGTATGA
* *
72545269 ATATGAATGTGATTTGGGTCAAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
72545298 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
72545327 ATATGAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
72545356 ATACGAATGTGATTTGAGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
72545385 ATACGAATGTGATTAGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
72545414 ATATGAATGAGATTT-GGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
72545442 ATATGCATGT
1 ATATGAATGT
72545452 ATGTAGACTT
Statistics
Matches: 140, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 20 0.14
29 120 0.86
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:72546104 original size:13 final size:13
Alignment explanation
Indices: 72546086--72546114 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
72546076 GTGTATTGGT
72546086 TGGATTATTGGGG
1 TGGATTATTGGGG
72546099 TGGATTATTGGGG
1 TGGATTATTGGGG
72546112 TGG
1 TGG
72546115 GTCAATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.48, T:0.38
Consensus pattern (13 bp):
TGGATTATTGGGG
Found at i:72554974 original size:30 final size:30
Alignment explanation
Indices: 72554939--72554998 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
72554929 ATTTAATACG
**
72554939 AACTTTGGCAAAATTACTTTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
72554969 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
72554999 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:72558554 original size:18 final size:17
Alignment explanation
Indices: 72558526--72558559 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
72558516 GACTTTAACC
72558526 CATTACAGAATAAGAAA
1 CATTACAGAATAAGAAA
*
72558543 CATTATCAGAATCAGAA
1 CATTA-CAGAATAAGAA
72558560 TCAGAATCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.21
Consensus pattern (17 bp):
CATTACAGAATAAGAAA
Found at i:72558556 original size:6 final size:6
Alignment explanation
Indices: 72558547--72558606 Score: 68
Period size: 6 Copynumber: 9.8 Consensus size: 6
72558537 AAGAAACATT
* *
72558547 ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
*
72558596 ATCAGT ATCAG
1 ATCAGA ATCAG
72558607 GTAACAGAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
5 1 0.02
6 42 0.91
7 2 0.04
8 1 0.02
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:72558585 original size:31 final size:31
Alignment explanation
Indices: 72558549--72558616 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
72558539 GAAACATTAT
* *
72558549 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
*
72558580 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
72558611 CAGAAT
1 CAGAAT
72558617 AAAAAATTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.19
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:72559456 original size:6 final size:6
Alignment explanation
Indices: 72559438--72559569 Score: 76
Period size: 6 Copynumber: 21.3 Consensus size: 6
72559428 AAGAAACATT
* * *
72559438 ATCAGA A-CTAGA ATCAGA ATCAAA ATCAGA ATCAGA ATCAAA ATTAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
72559485 GTGACAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCA-A
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* *
72559535 GATCAGT ATCAGGTA AT-AGA ATCAAAA ATCAGA AT
1 -ATCAGA ATCA-G-A ATCAGA ATC-AGA ATCAGA AT
72559570 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 15, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
5 8 0.08
6 72 0.74
7 13 0.13
8 4 0.04
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:72559498 original size:31 final size:31
Alignment explanation
Indices: 72559461--72559569 Score: 112
Period size: 31 Copynumber: 3.5 Consensus size: 31
72559451 TCAGAATCAA
* *
72559461 AATCAGAATCAGAATCAAAATTAGGTGACAG
1 AATCAGAATCAGAATCAAAATCAGGTAACAG
**
72559492 AATCAGAATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAAAATCAGGTAACAG
* ** *
72559523 AATCAAAATCA-AGATCAGTATCAGGTAATAG
1 AATCAGAATCAGA-ATCAAAATCAGGTAACAG
*
72559554 AATCAAAAATCAGAAT
1 AATC-AGAATCAGAAT
72559570 GTGAATGCAA
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
30 1 0.01
31 58 0.84
32 9 0.13
33 1 0.01
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGAATCAAAATCAGGTAACAG
Found at i:72559749 original size:27 final size:26
Alignment explanation
Indices: 72559706--72559807 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
72559696 GCTCAGTTAT
* *
72559706 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
* * *
72559733 CAAATATTGTGGTAGAGCCACTAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
72559759 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
72559787 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
72559808 TTAACAGAAT
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 6 0.10
27 48 0.77
28 8 0.13
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:72559798 original size:54 final size:53
Alignment explanation
Indices: 72559706--72559808 Score: 125
Period size: 54 Copynumber: 1.9 Consensus size: 53
72559696 GCTCAGTTAT
* * * * *
72559706 CAGATATTGTGACAGAGTCACCAGATACAAATATTGTGGTAGAGCCACTAGAA
1 CAGATATTGTGACAGAGCCACCAGAAACAAATAATGTGGCAAAGCCACTAGAA
* * *
72559759 CAGATATTTGTGGCATAGCCACCAGAAACAGATAATGTGGCAAAGCCACT
1 CAGATA-TTGTGACAGAGCCACCAGAAACAAATAATGTGGCAAAGCCACT
72559809 TAACAGAATA
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 6 0.15
54 35 0.85
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.21
Consensus pattern (53 bp):
CAGATATTGTGACAGAGCCACCAGAAACAAATAATGTGGCAAAGCCACTAGAA
Found at i:72560514 original size:27 final size:27
Alignment explanation
Indices: 72560483--72561110 Score: 664
Period size: 27 Copynumber: 23.3 Consensus size: 27
72560473 AAGGTATCTC
*
72560483 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTT
* ** **
72560510 AGTAATTCTACCCTACATAGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTT
* * * **
72560537 GATAATTCTACCTTACATGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTT
** * **
72560564 AATAATTCTACCCTACAAGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTT
* * * *
72560591 GATAATTCTACCCTATAGAGGTATTCT
1 GGTAATTCTACCCTACAGGGGTATTTT
* *
72560618 GGTAATTCTACCCTACAGGAGTATTCT
1 GGTAATTCTACCCTACAGGGGTATTTT
* *
72560645 GGTAAATCTACCCTACAGGGGTATTCT
1 GGTAATTCTACCCTACAGGGGTATTTT
*
72560672 GGTAATTCTACCCTACAGGGGTATTCT
1 GGTAATTCTACCCTACAGGGGTATTTT
* *
72560699 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTT
**
72560726 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTT
* **
72560753 GGTAATTCTACCCTACAGGAGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTT
* *
72560780 GGTGATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTT
* *
72560807 GATAATTCTACCCTACAGGGTTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTT
* * *
72560834 GGTAATTCTACCTTACAAGGTTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTT
72560861 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTT
* * **
72560888 GGTAGTTCTACCCTACAGAGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTT
* **
72560915 GGTAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTT
* * *
72560942 GGTAATTTTACCCTACAAGGGTATTTA
1 GGTAATTCTACCCTACAGGGGTATTTT
* * **
72560969 AGTAATTCTAACCTTA-AGGGGTATTGC
1 GGTAATTCT-ACCCTACAGGGGTATTTT
* **
72560996 GGTAATTCTACCCTACAAGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTT
*
72561023 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTT
* * *
72561050 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTT
* * * *
72561077 GGTATTTCTACCCTAGAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTT
72561104 GGTAATT
1 GGTAATT
72561111 TTGTAAATCG
Statistics
Matches: 522, Mismatches: 77, Indels: 4
0.87 0.13 0.01
Matches are distributed among these distances:
26 5 0.01
27 512 0.98
28 5 0.01
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTT
Found at i:72561163 original size:27 final size:26
Alignment explanation
Indices: 72561093--72561164 Score: 63
Period size: 27 Copynumber: 2.7 Consensus size: 26
72561083 TCTACCCTAG
*
72561093 AAGGGTATTTCGGTAATTTTGTAAATC
1 AAGGGTATTT-GGTAATTCTGTAAATC
* *** *
72561120 GAGGGTAAAACGATAATTCTGTAAATC
1 AAGGGT-ATTTGGTAATTCTGTAAATC
72561147 AAGGGTACTTTGGTAATT
1 AAGGGTA-TTTGGTAATT
72561165 TTACAAGTCG
Statistics
Matches: 32, Mismatches: 11, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
26 1 0.03
27 30 0.94
28 1 0.03
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
AAGGGTATTTGGTAATTCTGTAAATC
Found at i:72561178 original size:27 final size:26
Alignment explanation
Indices: 72561143--72561489 Score: 239
Period size: 27 Copynumber: 12.9 Consensus size: 26
72561133 TAATTCTGTA
* *
72561143 AATCAAGGGTACTTTGGTAATTTTAC
1 AATCGAGGGTATTTTGGTAATTTTAC
***
72561169 AAGTCGAGGGTATTTCAATAATTTTAC
1 AA-TCGAGGGTATTTTGGTAATTTTAC
* * *
72561196 AGGTCGAGGGTATTTTAGTAATTTCAC
1 A-ATCGAGGGTATTTTGGTAATTTTAC
72561223 AAATC-AGGGATATTTTGGTAATTTTAC
1 -AATCGAGGG-TATTTTGGTAATTTTAC
* * *
72561250 AAACTAGGGGTATTTTGATAATTTTAC
1 AATCGA-GGGTATTTTGGTAATTTTAC
* *
72561277 AAACCAGGGGTATTTTGGTAATTTTAC
1 AATCGA-GGGTATTTTGGTAATTTTAC
* * * *
72561304 AAACCAGAGGTATTTTGGTAACTTTAT
1 AATCGAG-GGTATTTTGGTAATTTTAC
* * *
72561331 AAACAAAGGGTATTTTAGTAATTTTAC
1 AATC-GAGGGTATTTTGGTAATTTTAC
* *
72561358 AAACTAGGGGTATTTTGGTAATTTTGTA-
1 AATCGA-GGGTATTTTGGTAA-TTT-TAC
* * *
72561386 AACCAATGGTATTTTGGTAATTTTAC
1 AATCGAGGGTATTTTGGTAATTTTAC
* * * * *
72561412 AAACCAGGGGTATTTTAGTGATTTTATA
1 AATCGA-GGGTATTTTGGTAATTTTA-C
* * *
72561440 AACCAAGGGTATTTTAGTAATTTTAC
1 AATCGAGGGTATTTTGGTAATTTTAC
* *
72561466 AAACTAGGGGTATTTTGGTAATTT
1 AATCGA-GGGTATTTTGGTAATTT
72561490 GGTAAACTAA
Statistics
Matches: 266, Mismatches: 40, Indels: 29
0.79 0.12 0.09
Matches are distributed among these distances:
25 2 0.01
26 22 0.08
27 223 0.84
28 17 0.06
29 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (26 bp):
AATCGAGGGTATTTTGGTAATTTTAC
Found at i:72561218 original size:81 final size:79
Alignment explanation
Indices: 72561133--72561489 Score: 317
Period size: 81 Copynumber: 4.4 Consensus size: 79
72561123 GGTAAAACGA
* * * * *
72561133 TAATTCTGTAAATCAAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAG
1 TAATT-TGTAAATCAAGGGTATTTTGGTAATTTTACAA-ACAAGGGTATTTTAATAATTTTACAA
** *
72561198 GTC-GAGGGTATTTTAG
64 ACCAG-GGGTATTTTGG
** * *
72561214 TAATTTCACAAATC-AGGGATATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACA
1 TAATTT-GTAAATCAAGGG-TATTTTGGTAATTTTACAAAC-AAGGGTATTTTAATAATTTTACA
72561278 AACCAGGGGTATTTTGG
63 AACCAGGGGTATTTTGG
* * * * *
72561295 TAATTT-TACAAACCAGAGGTATTTTGGTAACTTTATAAACAAAGGGTATTTTAGTAATTTTACA
1 TAATTTGTA-AATCAAG-GGTATTTTGGTAATTTTACAAAC-AAGGGTATTTTAATAATTTTACA
*
72561359 AACTAGGGGTATTTTGG
63 AACCAGGGGTATTTTGG
* * * * * *
72561376 TAATTTTGTAAACCAATGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTGATTTTATAA
1 TAA-TTTGTAAATCAAGGGTATTTTGGTAATTTTACAAA-CAAGGGTATTTTAATAATTTTACAA
* *
72561441 ACCAAGGGTATTTTAG
64 ACCAGGGGTATTTTGG
* *
72561457 TAATTT-TACAAACTAGGGGTATTTTGGTAATTT
1 TAATTTGTA-AATC-AAGGGTATTTTGGTAATTT
72561490 GGTAAACTAA
Statistics
Matches: 229, Mismatches: 35, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
79 3 0.01
80 15 0.07
81 198 0.86
82 11 0.05
83 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (79 bp):
TAATTTGTAAATCAAGGGTATTTTGGTAATTTTACAAACAAGGGTATTTTAATAATTTTACAAAC
CAGGGGTATTTTGG
Found at i:72561498 original size:27 final size:27
Alignment explanation
Indices: 72561203--72561489 Score: 367
Period size: 27 Copynumber: 10.6 Consensus size: 27
72561193 TACAGGTCGA
* * *
72561203 GGGTATTTTAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
72561230 GGATATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
72561257 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
72561284 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * * *
72561311 AGGTATTTTGGTAACTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
72561338 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
72561365 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
72561392 TGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
72561419 GGGTATTTTAGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
72561446 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
72561473 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
72561490 GGTAAACTAA
Statistics
Matches: 221, Mismatches: 39, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 221 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:72563468 original size:30 final size:30
Alignment explanation
Indices: 72563433--72563492 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
72563423 ATTTAATACG
**
72563433 AACTTTGGCAAAATTACTTTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
72563463 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
72563493 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:72566481 original size:21 final size:21
Alignment explanation
Indices: 72566470--72566530 Score: 97
Period size: 21 Copynumber: 2.9 Consensus size: 21
72566460 TATAATGAGT
72566470 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
72566491 ATATCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
72566512 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
72566531 ATATCAATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:72566498 original size:5 final size:5
Alignment explanation
Indices: 72566470--72566541 Score: 56
Period size: 5 Copynumber: 14.0 Consensus size: 5
72566460 TATAATGAGT
* * * * *
72566470 ATATC ATAGC ATATC ATGTGC ATATC ATAAC ATATC ATGTGC ATATC ATGTC
1 ATATC ATATC ATATC ATAT-C ATATC ATATC ATATC ATAT-C ATATC ATATC
*
72566522 ATATC ATGT- ATATC AATATC
1 ATATC ATATC ATATC -ATATC
72566542 TCATGCATCT
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
4 3 0.06
5 35 0.69
6 13 0.25
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (5 bp):
ATATC
Found at i:72566529 original size:10 final size:10
Alignment explanation
Indices: 72566470--72566536 Score: 75
Period size: 10 Copynumber: 6.6 Consensus size: 10
72566460 TATAATGAGT
72566470 ATATCATAG-C
1 ATATCAT-GTC
72566480 ATATCATGTGC
1 ATATCATGT-C
**
72566491 ATATCATAAC
1 ATATCATGTC
72566501 ATATCATGTGC
1 ATATCATGT-C
72566512 ATATCATGTC
1 ATATCATGTC
72566522 ATATCATGT-
1 ATATCATGTC
72566531 ATATCA
1 ATATCA
72566537 ATATCTCATG
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
9 7 0.14
10 25 0.50
11 18 0.36
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:72568183 original size:93 final size:93
Alignment explanation
Indices: 72568054--72568225 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
72568044 CGCCCATAAG
* * * *
72568054 CGAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72568119 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
* *
72568147 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
72568212 ACGAGTTTGGATGC
66 ACGAGCTCGGATGC
72568226 TCGACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:72568218 original size:46 final size:46
Alignment explanation
Indices: 72568047--72568216 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
72568037 TGTAACCCGC
* * * *
72568047 CCATAAGCGAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
72568093 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
72568143 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
72568186 CCATAAGTGAACTTGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
72568217 TTTGGATGCT
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 55 0.55
47 28 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:72571690 original size:30 final size:30
Alignment explanation
Indices: 72571632--72571691 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
72571622 TTTACAAGCC
* **
72571632 TAAGGGCAAAATAATAATTTTGTGAAAGTT
1 TAAGGGCAAAACAATAATTTTGCCAAAGTT
* *
72571662 TAAGGGCAAAACGATCATTTTGCCAAAGTT
1 TAAGGGCAAAACAATAATTTTGCCAAAGTT
72571692 GGAATTTTAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (30 bp):
TAAGGGCAAAACAATAATTTTGCCAAAGTT
Found at i:72572088 original size:48 final size:48
Alignment explanation
Indices: 72572011--72572483 Score: 581
Period size: 48 Copynumber: 9.8 Consensus size: 48
72572001 AGGGTTATAT
* * *
72572011 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATGTGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGA
*
72572059 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTTATATGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGA
*
72572107 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGA
*
72572155 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTTATATGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGA
* * * * *
72572203 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATATGT
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGA
* * * * *
72572251 GAACCAGTGTAAGACCATGTTTGGAATATGGCAT-GGCATTTATATGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGA
* * * * * * * *
72572298 GAGCTAGTGTAAGGCCATGTATGGGACATGACATCGACCTCGACATGT
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGA
** * * * *
72572346 GAGCTAGTGTAAGATTATGTTCT-GGACATAGCATCGGCCTTGACATGT
1 GAGCTAGTGTAAGACCATGTT-TGGGACATGGCATCGGCATTGATATGA
* * * * *
72572394 GAGCTAGTGTAAGACCATGTTTGGAACATGGCTTTGCCACTGATATATGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG--ATATGA
*
72572444 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT
72572484 CTTACCTTTT
Statistics
Matches: 358, Mismatches: 62, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
47 37 0.10
48 282 0.79
49 1 0.00
50 38 0.11
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGA
Found at i:72579996 original size:19 final size:19
Alignment explanation
Indices: 72579972--72580027 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
72579962 GTATTCGATT
72579972 ACATGTGAATTTATATTGA
1 ACATGTGAATTTATATTGA
* *
72579991 ACATGTGTATTTA-GTT-A
1 ACATGTGAATTTATATTGA
*
72580008 A-ATGTGAGTTTATATTGA
1 ACATGTGAATTTATATTGA
72580026 AC
1 AC
72580028 TTATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 9 0.31
17 4 0.14
18 4 0.14
19 12 0.41
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (19 bp):
ACATGTGAATTTATATTGA
Found at i:72580837 original size:40 final size:40
Alignment explanation
Indices: 72580788--72580915 Score: 231
Period size: 40 Copynumber: 3.2 Consensus size: 40
72580778 CGAGCTAAAA
72580788 TCCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAG
1 TCCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAG
72580828 TCCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAG
1 TCCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAG
* *
72580868 TCTCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAA
1 TCCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAG
72580908 T-CCGAAGG
1 TCCCGAAGG
72580916 TACTTGGGTT
Statistics
Matches: 85, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 6 0.07
40 79 0.93
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (40 bp):
TCCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAG
Found at i:72588915 original size:29 final size:29
Alignment explanation
Indices: 72588852--72588919 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
72588842 TAATCAACCA
72588852 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
72588881 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
72588910 CGCACACTTA
1 CGCACACTTA
72588920 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:72589060 original size:29 final size:30
Alignment explanation
Indices: 72589021--72589099 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
72589011 CTTAATAATC
72589021 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
72589051 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
72589080 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72589100 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:72594580 original size:29 final size:29
Alignment explanation
Indices: 72594517--72594584 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
72594507 TAATCAACCA
72594517 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
72594546 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
72594575 CGCACACTTA
1 CGCACACTTA
72594585 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:72594725 original size:29 final size:30
Alignment explanation
Indices: 72594686--72594764 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
72594676 CTTAATAATC
72594686 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
72594716 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
72594745 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72594765 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:72596041 original size:11 final size:11
Alignment explanation
Indices: 72596025--72596049 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
72596015 CCTCACTAAG
72596025 CCAACATGTTT
1 CCAACATGTTT
72596036 CCAACATGTTT
1 CCAACATGTTT
72596047 CCA
1 CCA
72596050 CCCATAGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.32
Consensus pattern (11 bp):
CCAACATGTTT
Found at i:72596689 original size:19 final size:19
Alignment explanation
Indices: 72596665--72596720 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
72596655 GTATTCGATT
72596665 ACATGTGAATTTATATTGA
1 ACATGTGAATTTATATTGA
* *
72596684 ACATGTGTATTTA-GTT--
1 ACATGTGAATTTATATTGA
*
72596700 ACATGTGAGTTTATATTGA
1 ACATGTGAATTTATATTGA
72596719 AC
1 AC
72596721 TTATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 11 0.38
17 2 0.07
18 2 0.07
19 14 0.48
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (19 bp):
ACATGTGAATTTATATTGA
Found at i:72596736 original size:33 final size:35
Alignment explanation
Indices: 72596663--72596729 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
72596653 GAGTATTCGA
*
72596663 TTACATGTGAATTTATATTGAACATGTGTATTTAG
1 TTACATGTGAATTTATATTGAACATGTATATTTAG
*
72596698 TTACATGTGAGTTTATATTGAAC-T-TATATTTA
1 TTACATGTGAATTTATATTGAACATGTATATTTA
72596730 TATACATCCG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.23
34 1 0.03
35 22 0.73
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.48
Consensus pattern (35 bp):
TTACATGTGAATTTATATTGAACATGTATATTTAG
Found at i:72597536 original size:40 final size:40
Alignment explanation
Indices: 72597478--72597609 Score: 255
Period size: 40 Copynumber: 3.3 Consensus size: 40
72597468 AACCGAACTA
72597478 AAATCCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCT
1 AAATCCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCT
*
72597518 AAGTCCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCT
1 AAATCCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCT
72597558 AAATCCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCT
1 AAATCCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCT
72597598 AAATCCCGAAGG
1 AAATCCCGAAGG
72597610 TACTTGGGTT
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
AAATCCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCT
Found at i:72605251 original size:27 final size:27
Alignment explanation
Indices: 72605220--72605277 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
72605210 ACTCCCTAAT
*
72605220 TGATAAAATGACTGTTATGCCCCTATG
1 TGATAAAATGACTGTTATGCCCCAATG
*
72605247 TGATAAAATGACTTTTATGCCCCAATG
1 TGATAAAATGACTGTTATGCCCCAATG
72605274 TGAT
1 TGAT
72605278 GTATAATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (27 bp):
TGATAAAATGACTGTTATGCCCCAATG
Found at i:72606435 original size:7 final size:7
Alignment explanation
Indices: 72606423--72606472 Score: 82
Period size: 7 Copynumber: 7.1 Consensus size: 7
72606413 CCAAAGCGTG
72606423 ACCCTAA
1 ACCCTAA
72606430 ACCCTAA
1 ACCCTAA
*
72606437 ACCATAA
1 ACCCTAA
72606444 ACCCTAA
1 ACCCTAA
72606451 ACCCTAA
1 ACCCTAA
*
72606458 ACACTAA
1 ACCCTAA
72606465 ACCCTAA
1 ACCCTAA
72606472 A
1 A
72606473 ACTCTAATCT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (7 bp):
ACCCTAA
Found at i:72612560 original size:18 final size:18
Alignment explanation
Indices: 72612534--72612581 Score: 87
Period size: 18 Copynumber: 2.6 Consensus size: 18
72612524 ATTCTTGTCA
72612534 AAAATTAATTAAGTATTAT
1 AAAA-TAATTAAGTATTAT
72612553 AAAATAATTAAGTATTAT
1 AAAATAATTAAGTATTAT
72612571 AAAATAATTAA
1 AAAATAATTAA
72612582 ATTGTGTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 25 0.86
19 4 0.14
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (18 bp):
AAAATAATTAAGTATTAT
Found at i:72621436 original size:46 final size:46
Alignment explanation
Indices: 72621245--72621436 Score: 119
Period size: 46 Copynumber: 4.2 Consensus size: 46
72621235 AACCCGCCCA
* * * ***
72621245 TAAGTGAACCCGGACTCAACTCAACGAGCTC--AGGCGTCCGTATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-TCAACATCC
*
72621290 ATAAGTGAACTCGGACTAAACTCAACGAGTTCGGATGC-CTAGTTACAT-C
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACATCC
* * * * *** * *
72621339 TCA-CGAACTCGGACTCAACTCAATGAGTTCGAACATTC-GCATCTG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATC-C
72621384 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CATCC
72621431 T-AGTGA
1 TAAGTGA
72621437 CATGTCATTT
Statistics
Matches: 108, Mismatches: 26, Indels: 24
0.68 0.16 0.15
Matches are distributed among these distances:
43 3 0.03
45 2 0.02
46 63 0.58
47 27 0.25
48 10 0.09
49 1 0.01
50 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC
Found at i:72628934 original size:93 final size:93
Alignment explanation
Indices: 72628826--72628996 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
72628816 GCCCCTAAGT
** *
72628826 GAACTCGAACTCAACTCAACCAACTT-AGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAA-CAACTTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
72628890 ATGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
72628919 GAACTCGGACTCAACTCAACGAGTTCAAACATTCGCATCCGTAAGTGAACTCGGACTCAGCTCAA
1 GAACTCGAACTCAACTCAACAACTTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72628984 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72628997 TCAACCATCC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 4 0.06
93 64 0.94
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACAACTTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72634815 original size:28 final size:27
Alignment explanation
Indices: 72634783--72634836 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
72634773 AATTAGTATC
* *
72634783 AGGTGGGCCTTAGCCCATTAACAGAATT
1 AGGTGGGCCTAAGCCCAAT-ACAGAATT
72634811 AGGTGGGCCTAAGCCCAATACAGAAT
1 AGGTGGGCCTAAGCCCAATACAGAAT
72634837 CAGTATCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 7 0.29
28 17 0.71
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.20
Consensus pattern (27 bp):
AGGTGGGCCTAAGCCCAATACAGAATT
Found at i:72636638 original size:28 final size:29
Alignment explanation
Indices: 72636601--72636695 Score: 111
Period size: 29 Copynumber: 3.3 Consensus size: 29
72636591 AAGTCTACAT
* *
72636601 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
72636629 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* ** *
72636658 AAATTTGTATGGCCCATTAGGCCCTAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
72636687 ACATACATA
1 ACATTCATA
72636696 GTCATGCTTT
Statistics
Matches: 54, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
28 21 0.39
29 33 0.61
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:72642047 original size:34 final size:34
Alignment explanation
Indices: 72642004--72642075 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
72641994 CAAAACAATT
72642004 AAAGTAAGTAAGTGCTGATCAAAGCACATGAAGA
1 AAAGTAAGTAAGTGCTGATCAAAGCACATGAAGA
*
72642038 AAAGTAAGTAAGTGTTGATCAAAGCACATGAAGA
1 AAAGTAAGTAAGTGCTGATCAAAGCACATGAAGA
72642072 AAAG
1 AAAG
72642076 CGTATTTGCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.49, C:0.10, G:0.24, T:0.18
Consensus pattern (34 bp):
AAAGTAAGTAAGTGCTGATCAAAGCACATGAAGA
Found at i:72642521 original size:28 final size:28
Alignment explanation
Indices: 72642456--72642545 Score: 123
Period size: 27 Copynumber: 3.3 Consensus size: 28
72642446 GTAACAGAGT
* *
72642456 CACCAGATATAGAT-TTTGTGGCAGAGC
1 CACCAGAAATAGATATTTGTGGCATAGC
*
72642483 CACCAG-AATAGATATTTGTGGTATAGC
1 CACCAGAAATAGATATTTGTGGCATAGC
*
72642510 CACCAGAAATAGATATTTG-GGCATGGC
1 CACCAGAAATAGATATTTGTGGCATAGC
72642537 CACCAGAAA
1 CACCAGAAA
72642546 ACTTCCTCCA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 6 0.11
27 38 0.68
28 12 0.21
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (28 bp):
CACCAGAAATAGATATTTGTGGCATAGC
Found at i:72647728 original size:27 final size:26
Alignment explanation
Indices: 72647711--72647780 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
72647701 ATATTAAGTC
72647711 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
72647738 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
72647766 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
72647781 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:72647774 original size:28 final size:28
Alignment explanation
Indices: 72647711--72647808 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
72647701 ATATTAAGTC
*
72647711 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
72647738 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72647766 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72647795 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72647809 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72648272 original size:12 final size:12
Alignment explanation
Indices: 72648255--72648280 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
72648245 TGGGCATACT
72648255 TATGTATATATA
1 TATGTATATATA
72648267 TATGTATATATA
1 TATGTATATATA
72648279 TA
1 TA
72648281 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:72648748 original size:14 final size:14
Alignment explanation
Indices: 72648729--72648755 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
72648719 ACACAAGCCT
72648729 TTGACCGAATGTCC
1 TTGACCGAATGTCC
72648743 TTGACCGAATGTC
1 TTGACCGAATGTC
72648756 ACCTAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (14 bp):
TTGACCGAATGTCC
Found at i:72659036 original size:43 final size:42
Alignment explanation
Indices: 72658877--72659049 Score: 129
Period size: 43 Copynumber: 4.0 Consensus size: 42
72658867 ACATAGGATT
* * *
72658877 TTGATATGTGATTTCGTGTAAGACCACGTCTGGGACTTGGCA
1 TTGATATTTGATTTCATGTAAGACCACGTCTGGGACATGGCA
* * * * *
72658919 TCGGT-TTGAGATTT-ATGCGTAAGACCATGTCTGGGACATCGACA
1 TTGATATT-TGATTTCAT--GTAAGACCACGTCTGGGACAT-GGCA
* * * *
72658963 -TCATATTTTATTTCGTGTAAGACGC-TGTCTGGGACAATGGCA
1 TTGATATTTGATTTCATGTAAGAC-CACGTCTGGGAC-ATGGCA
* *
72659005 TTGATATTTGATTACATGTAAGACCACGTCTGGGACGTAGGCA
1 TTGATATTTGATTTCATGTAAGACCACGTCTGGGACAT-GGCA
72659048 TT
1 TT
72659050 ATACGAGCTT
Statistics
Matches: 99, Mismatches: 21, Indels: 21
0.70 0.15 0.15
Matches are distributed among these distances:
41 2 0.02
42 30 0.30
43 61 0.62
44 6 0.06
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
TTGATATTTGATTTCATGTAAGACCACGTCTGGGACATGGCA
Found at i:72661558 original size:74 final size:74
Alignment explanation
Indices: 72661437--72661578 Score: 221
Period size: 74 Copynumber: 1.9 Consensus size: 74
72661427 GTGCTACACA
* * * **
72661437 GCTTAGAACATGGGCGTGTGTCTTGGCCGTGTGAAACTTGCACCTAATTTTGAATTGAATTAATT
1 GCTTAGAACACGGGCGTGTGTCTAGGCCGTGTGAAACCTGCACCTAATTTCAAATTGAATTAATT
72661502 AACCATATG
66 AACCATATG
* *
72661511 GCTTAGAACACGGGTGTGTGTCTAGGCTGTGTGAAACCTGCACCTAATTTCAAATTGAATTAATT
1 GCTTAGAACACGGGCGTGTGTCTAGGCCGTGTGAAACCTGCACCTAATTTCAAATTGAATTAATT
72661576 AAC
66 AAC
72661579 AACACAGGCG
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 61 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (74 bp):
GCTTAGAACACGGGCGTGTGTCTAGGCCGTGTGAAACCTGCACCTAATTTCAAATTGAATTAATT
AACCATATG
Found at i:72662208 original size:3 final size:3
Alignment explanation
Indices: 72662200--72662267 Score: 100
Period size: 3 Copynumber: 22.7 Consensus size: 3
72662190 TGAGGATCTC
* * *
72662200 GAA GAA GAA GAA GAA GAA GAA AAA GAA GAA GAT GAA GAA AAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
*
72662248 GAA GAA AAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GA
72662268 TCCCACTGAA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.01
Consensus pattern (3 bp):
GAA
Found at i:72663547 original size:3 final size:3
Alignment explanation
Indices: 72663539--72663579 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
72663529 TTGTATTGAA
72663539 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
72663580 AGAGCACATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:72664463 original size:11 final size:10
Alignment explanation
Indices: 72664447--72664485 Score: 53
Period size: 11 Copynumber: 3.8 Consensus size: 10
72664437 ACGGTCAAAA
72664447 TTATGATTATT
1 TTAT-ATTATT
72664458 TTATGATTATT
1 TTAT-ATTATT
72664469 TTATA-TATT
1 TTATATTATT
72664478 TTATATTA
1 TTATATTA
72664486 AATTTTATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.33
10 3 0.11
11 15 0.56
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (10 bp):
TTATATTATT
Found at i:72665154 original size:6 final size:6
Alignment explanation
Indices: 72665140--72665175 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
72665130 ATAGGAATAA
72665140 TTGTT- TTGTTC TTGTTC TTGTTC TTGTTC TTGTTC T
1 TTGTTC TTGTTC TTGTTC TTGTTC TTGTTC TTGTTC T
72665176 AATTAAAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.00, C:0.14, G:0.17, T:0.69
Consensus pattern (6 bp):
TTGTTC
Found at i:72666953 original size:28 final size:27
Alignment explanation
Indices: 72666867--72667018 Score: 110
Period size: 28 Copynumber: 5.4 Consensus size: 27
72666857 CTGATTTTGA
* * *
72666867 ACACATAGCGCTCGATTAAAGAACTCGC
1 ACACATAGTGCTCAATT-AAGAACTTGC
** *
72666895 ACACATAGTGCCTCAATTACCAATCTCGC
1 ACACATAGTG-CTCAATTAAGAA-CTTGC
72666924 ACACATAGTGCTCAATTGAAGAACTTGC
1 ACACATAGTGCTCAATT-AAGAACTTGC
* * *
72666952 ACACACAGTGCCTCAACTACTG-A-TTGGC
1 ACACATAGTG-CTCAATTA-AGAACTT-GC
**
72666980 ACACATAGTGCTCGGTTGAAGAACTTGC
1 ACACATAGTGCTCAATT-AAGAACTTGC
*
72667008 ACACACAGTGC
1 ACACATAGTGC
72667019 CTCATAATTC
Statistics
Matches: 99, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
27 7 0.07
28 59 0.60
29 33 0.33
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (27 bp):
ACACATAGTGCTCAATTAAGAACTTGC
Found at i:72667003 original size:56 final size:57
Alignment explanation
Indices: 72666867--72667022 Score: 215
Period size: 56 Copynumber: 2.8 Consensus size: 57
72666857 CTGATTTTGA
* * * * *
72666867 ACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATCTCGC
1 ACACATAGTGCTCGATTGAAGAACTTGCACACACAGTGCCTCAACTACCAATCTCGC
* ** *
72666924 ACACATAGTGCTCAATTGAAGAACTTGCACACACAGTGCCTCAACTACTGAT-TGGC
1 ACACATAGTGCTCGATTGAAGAACTTGCACACACAGTGCCTCAACTACCAATCTCGC
*
72666980 ACACATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
1 ACACATAGTGCTCGATTGAAGAACTTGCACACACAGTGCCTCA
72667023 TAATTCCAGC
Statistics
Matches: 88, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
56 44 0.50
57 44 0.50
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (57 bp):
ACACATAGTGCTCGATTGAAGAACTTGCACACACAGTGCCTCAACTACCAATCTCGC
Found at i:72667095 original size:40 final size:40
Alignment explanation
Indices: 72667028--72667258 Score: 349
Period size: 40 Copynumber: 5.8 Consensus size: 40
72667018 CCTCATAATT
* * *
72667028 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGACATAACA
* * *
72667067 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
*
72667107 CCAGCACGAATGCTCTTCAGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
*
72667147 CCAGCACGAATGCTCTTTGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
*
72667187 CCAGCACGAATGCTCTTCGGGACTTAGCCTGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
*
72667227 CCAGCATGAATGCTCTTCGGGACTTAGCCCGG
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
72667259 CTATATAACT
Statistics
Matches: 178, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.08
40 164 0.92
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
Found at i:72668803 original size:48 final size:48
Alignment explanation
Indices: 72668745--72669053 Score: 537
Period size: 48 Copynumber: 6.4 Consensus size: 48
72668735 ATATACACAC
*
72668745 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
72668793 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
72668841 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
72668889 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
72668937 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTA-C-CACATATACAT
* *
72668987 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTA-C-CACATATACAT
72669037 ATCTCATACATATTTCA
1 ATCTCATACATATTTCA
72669054 GCAATAGCTT
Statistics
Matches: 252, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
48 175 0.69
49 1 0.00
50 76 0.30
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:72678134 original size:40 final size:40
Alignment explanation
Indices: 72678079--72678269 Score: 197
Period size: 40 Copynumber: 4.8 Consensus size: 40
72678069 CTAACCACAA
* * *
72678079 GCACAATTGCCTTCGGGTCTTAACTCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
72678119 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * *
72678159 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * * * *
72678198 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * *
72678238 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
72678270 CATTCAAATG
Statistics
Matches: 140, Mismatches: 10, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 32 0.23
40 108 0.77
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:72678220 original size:39 final size:39
Alignment explanation
Indices: 72678123--72678268 Score: 229
Period size: 40 Copynumber: 3.7 Consensus size: 39
72678113 CAACTCGCAC
* * * *
72678123 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATAAATC-ACTAGCAT
*
72678163 AAATGCCTTCGGGTCTTAGCCCGGATAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAATCACTAGCAT
72678202 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGAT-AAATCACTAGCAT
72678242 AAATGCCTTCGGGACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
72678269 TCATTCAAAT
Statistics
Matches: 101, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
39 32 0.32
40 69 0.68
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAATCACTAGCAT
Found at i:72678223 original size:79 final size:80
Alignment explanation
Indices: 72678078--72678268 Score: 242
Period size: 79 Copynumber: 2.4 Consensus size: 80
72678068 CCTAACCACA
* * * * * * *
72678078 AGCACAATTGCCTTCGGGTCTTAACTCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAGCAACTAGCACAAATGCCTTCGGGACTTAGC
*
72678143 CCGGAT-ATATCAACT
66 CCGGATAAAATC-ACT
* * *
72678158 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAGCAACTAGCACAAATGCCTTCGGGACTTAGC
72678222 CCGGATAAAATCACT
66 CCGGATAAAATCACT
* *
72678237 AGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
72678269 TCATTCAAAT
Statistics
Matches: 96, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 63 0.66
80 33 0.34
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAGCAACTAGCACAAATGCCTTCGGGACTTAGC
CCGGATAAAATCACT
Found at i:72686316 original size:40 final size:40
Alignment explanation
Indices: 72686271--72686463 Score: 219
Period size: 40 Copynumber: 4.8 Consensus size: 40
72686261 ATAACCACAA
* * *
72686271 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
72686311 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
72686351 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
72686391 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
72686431 GCATAAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCA-CAAATGCCTTCGGGTCTTAGCCCGGATAT
72686464 CATTCAAATG
Statistics
Matches: 141, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 111 0.79
41 30 0.21
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:72686452 original size:41 final size:40
Alignment explanation
Indices: 72686315--72686462 Score: 226
Period size: 40 Copynumber: 3.7 Consensus size: 40
72686305 CAACTCGCAC
* * * *
72686315 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTAGCAT
*
72686355 AAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
72686395 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
72686435 AAAATGCCTTCGGGACTTAGCCCGGATA
1 -AAATGCCTTCGGGACTTAGCCCGGATA
72686463 TCATTCAAAT
Statistics
Matches: 102, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
40 71 0.70
41 31 0.30
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
Found at i:72689946 original size:26 final size:26
Alignment explanation
Indices: 72689903--72689972 Score: 63
Period size: 26 Copynumber: 2.7 Consensus size: 26
72689893 TAACGCAGCG
* ** *
72689903 TAGCTACCAGTAGCAGTAAGTGTGGCA
1 TAGCCACCAGTAATAGTAAG-GTGACA
72689930 -AGCCACCAGTAATAGTAAAGGTGACA
1 TAGCCACCAGTAATAGT-AAGGTGACA
*
72689956 TAGTCACCAGT-ATAGTA
1 TAGCCACCAGTAATAGTA
72689973 CTTCCTCCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
25 1 0.03
26 23 0.64
27 12 0.33
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (26 bp):
TAGCCACCAGTAATAGTAAGGTGACA
Found at i:72690237 original size:27 final size:27
Alignment explanation
Indices: 72690207--72690259 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
72690197 TTTCACCCTA
* * *
72690207 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGATAAATCTACAAAC
*
72690234 CAAGGGTATTTCGATAATTCTACAAA
1 CAAGGGTATTTCGATAAATCTACAAA
72690260 TCGATGGTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (27 bp):
CAAGGGTATTTCGATAAATCTACAAAC
Found at i:72690278 original size:27 final size:26
Alignment explanation
Indices: 72690227--72690369 Score: 101
Period size: 27 Copynumber: 5.3 Consensus size: 26
72690217 TTGGTAAATC
* *
72690227 TACAAACCAAGGGTATTTC-GATAATTC
1 TACAAATC-AGGGTATTTCTG-TAATTT
*
72690254 TACAAATCGATGGTATTTCTGTAATTT
1 TACAAATC-AGGGTATTTCTGTAATTT
** *
72690281 TTGAAAGTCAAGGGTATTTTTGTAATTT
1 TACAAA-TC-AGGGTATTTCTGTAATTT
** *
72690309 TGTAAATCAGGGGTATTTCTATAATTT
1 TACAAATCA-GGGTATTTCTGTAATTT
* *
72690336 TCCAAATCATGGATATTT-TGGTAATTT
1 TACAAATCA-GGGTATTTCT-GTAATTT
72690363 TACAAAT
1 TACAAAT
72690370 TGAAGGTATT
Statistics
Matches: 93, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
26 2 0.02
27 68 0.73
28 23 0.25
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.41
Consensus pattern (26 bp):
TACAAATCAGGGTATTTCTGTAATTT
Found at i:72690378 original size:54 final size:55
Alignment explanation
Indices: 72690234--72690381 Score: 129
Period size: 55 Copynumber: 2.7 Consensus size: 55
72690224 ATCTACAAAC
* * * * * * * **
72690234 CAAGGGTATTTCGATAATTCTACAAATCGATGGTATTTCTGTAATTTTTGAAAGT
1 CAAGGATATTTTGGTAATTTTACAAATTGAAGGTATTTCTATAATTTTCCAAAGT
* * ** * *
72690289 CAAGGGTATTTTTGTAATTTTGTAAA-TCAGGGGTATTTCTATAATTTTCCAAA-T
1 CAAGGATATTTTGGTAATTTTACAAATTGA-AGGTATTTCTATAATTTTCCAAAGT
*
72690343 CATGGATATTTTGGTAATTTTACAAATTGAAGGTATTTC
1 CAAGGATATTTTGGTAATTTTACAAATTGAAGGTATTTC
72690382 GATACAAGTT
Statistics
Matches: 72, Mismatches: 19, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
54 31 0.43
55 41 0.57
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (55 bp):
CAAGGATATTTTGGTAATTTTACAAATTGAAGGTATTTCTATAATTTTCCAAAGT
Found at i:72690465 original size:28 final size:27
Alignment explanation
Indices: 72690431--72690492 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 27
72690421 CGTATTTCAG
*
72690431 TAATTTTACAAATTAGGGATATTTTTGA
1 TAATTTTACAAACTAGGGATA-TTTTGA
* * * *
72690459 TAATTTTATAACCTAGGGGTATTTTGG
1 TAATTTTACAAACTAGGGATATTTTGA
72690486 TAATTTT
1 TAATTTT
72690493 GTAACCCAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 12 0.41
28 17 0.59
ACGTcount: A:0.31, C:0.05, G:0.16, T:0.48
Consensus pattern (27 bp):
TAATTTTACAAACTAGGGATATTTTGA
Found at i:72690491 original size:27 final size:27
Alignment explanation
Indices: 72690394--72690509 Score: 83
Period size: 27 Copynumber: 4.3 Consensus size: 27
72690384 TACAAGTTGA
**
72690394 GGTATTTTGGTAATTTTAT-AGGTCAAG
1 GGTATTTTGGTAATTTTATAACCT-AAG
* ** * * *
72690421 CGTATTTCAGTAATTTTACAA-ATTAG
1 GGTATTTTGGTAATTTTATAACCTAAG
* *
72690447 GGATATTTTTGATAATTTTATAACCTAGG
1 GG-TA-TTTTGGTAATTTTATAACCTAAG
* *
72690476 GGTATTTTGGTAATTTTGTAACCCAAG
1 GGTATTTTGGTAATTTTATAACCTAAG
72690503 GGTATTT
1 GGTATTT
72690510 CAGTAATTCT
Statistics
Matches: 67, Mismatches: 18, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
26 3 0.04
27 44 0.66
28 16 0.24
29 4 0.06
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTATAACCTAAG
Found at i:72690515 original size:27 final size:27
Alignment explanation
Indices: 72690459--72690517 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
72690449 ATATTTTTGA
* * **
72690459 TAATTTTATAACCTAGGGGTATTTTGG
1 TAATTTTATAACCCAAGGGTATTTCAG
*
72690486 TAATTTTGTAACCCAAGGGTATTTCAG
1 TAATTTTATAACCCAAGGGTATTTCAG
72690513 TAATT
1 TAATT
72690518 CTATCCTACA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (27 bp):
TAATTTTATAACCCAAGGGTATTTCAG
Found at i:72690536 original size:27 final size:27
Alignment explanation
Indices: 72690506--72690582 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
72690496 ACCCAAGGGT
*
72690506 ATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
72690533 ATTTCAGTAATTCTACCCTTCAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* * *
72690560 ATTTCAATAATACTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAG
72690583 ATATGAGATT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.34
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:72693272 original size:66 final size:70
Alignment explanation
Indices: 72693142--72693272 Score: 153
Period size: 66 Copynumber: 1.9 Consensus size: 70
72693132 GGGATGTATC
* * *
72693142 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTA--AGAGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
72693207 AAGGACA
64 AAGGACA
* * * *
72693214 CCATGTAGACAAGAGAGCT-A-TGA-GATAAAT-TGGCTAGGTCACATGGGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTAAGAGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
72693273 TTCACCATGT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
66 23 0.44
67 7 0.13
68 2 0.04
69 1 0.02
72 19 0.37
ACGTcount: A:0.34, C:0.15, G:0.31, T:0.21
Consensus pattern (70 bp):
CCATGTAGACAAGAGAGCTAAGAGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTGAA
GGACA
Found at i:72700426 original size:34 final size:35
Alignment explanation
Indices: 72700359--72700437 Score: 142
Period size: 35 Copynumber: 2.3 Consensus size: 35
72700349 CTTATTACAT
72700359 AAACAAATACCCAAATTAAATTACTTATAAATTAA
1 AAACAAATACCCAAATTAAATTACTTATAAATTAA
72700394 AAACAAATACCCAAATTAAATTA-TTATAAATTAA
1 AAACAAATACCCAAATTAAATTACTTATAAATTAA
72700428 AAATCAAATA
1 AAA-CAAATA
72700438 AGAAAGCAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
34 14 0.33
35 29 0.67
ACGTcount: A:0.59, C:0.13, G:0.00, T:0.28
Consensus pattern (35 bp):
AAACAAATACCCAAATTAAATTACTTATAAATTAA
Found at i:72701126 original size:54 final size:54
Alignment explanation
Indices: 72701036--72701305 Score: 301
Period size: 54 Copynumber: 5.0 Consensus size: 54
72701026 AAACATACAT
* * * * * * *
72701036 CACATAGGGGTAAAACAGTCATCTTACCAT-AAAAGGGCATAACAGTCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTACC-TCATAAGGGCAAAACAGTTATTTTAC
* * *
72701090 CACATAAGGGCAAAATAGTCATTTTACCTCATAAGGGGCAAAACAGTTATCTTAC
1 CACATAAGGGCAAAACAATCATTTTACCTCATAA-GGGCAAAACAGTTATTTTAC
* * * * * *
72701145 CTCATAAGGGCAAAATAATTATTTTACCCCATAAGGGGAAAACAATTATTTTAC
1 CACATAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAAACAGTTATTTTAC
* *
72701199 CTCATAAGGGCAAAACAATCATTTTATCCT-ATAAGGACAAAACAGTTATTTTAC
1 CACATAAGGGCAAAACAATCATTTTA-CCTCATAAGGGCAAAACAGTTATTTTAC
* * * *
72701253 CACATAAGGGAAAAACAATCATTTTACCCCATAAGGGCAAAAGAGTCATTTTA
1 CACATAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAAACAGTTATTTTA
72701306 TCAATTAAGG
Statistics
Matches: 185, Mismatches: 27, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
53 3 0.02
54 133 0.72
55 49 0.26
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.26
Consensus pattern (54 bp):
CACATAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAAACAGTTATTTTAC
Found at i:72701259 original size:81 final size:82
Alignment explanation
Indices: 72701076--72701307 Score: 306
Period size: 81 Copynumber: 2.8 Consensus size: 82
72701066 AAAAGGGCAT
* * * * * *
72701076 AACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTACCTCATAAGGGGCAAAACAGTTATC
1 AACAGTTATTTTACCACATAAGGGAAAAACAATCATTTTACCTCATAA-GGGCAAAACAGTCATT
*
72701141 TTA-CCTCATAAGGGCAA
65 TTATCCTCATAAGGACAA
* * * * * *
72701158 AATAATTATTTTACCCCATAAGGGGAAAACAATTATTTTACCTCATAAGGGCAAAACAATCATTT
1 AACAGTTATTTTACCACATAAGGGAAAAACAATCATTTTACCTCATAAGGGCAAAACAGTCATTT
72701223 TATCCT-ATAAGGACAA
66 TATCCTCATAAGGACAA
* *
72701239 AACAGTTATTTTACCACATAAGGGAAAAACAATCATTTTACCCCATAAGGGCAAAAGAGTCATTT
1 AACAGTTATTTTACCACATAAGGGAAAAACAATCATTTTACCTCATAAGGGCAAAACAGTCATTT
72701304 TATC
66 TATC
72701308 AATTAAGGGT
Statistics
Matches: 129, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
81 86 0.67
82 43 0.33
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (82 bp):
AACAGTTATTTTACCACATAAGGGAAAAACAATCATTTTACCTCATAAGGGCAAAACAGTCATTT
TATCCTCATAAGGACAA
Found at i:72701302 original size:27 final size:27
Alignment explanation
Indices: 72701038--72701305 Score: 266
Period size: 27 Copynumber: 9.9 Consensus size: 27
72701028 ACATACATCA
* * * *
72701038 CATAGGGGTAAAACAGTCATCTTACCA
1 CATAAGGGCAAAACAGTCATTTTACCC
* * * *
72701065 TAAAAGGGCATAACAGTCATTTTACCA
1 CATAAGGGCAAAACAGTCATTTTACCC
* *
72701092 CATAAGGGCAAAATAGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCC
* * *
72701119 CATAAGGGGCAAAACAGTTATCTTACCT
1 CATAA-GGGCAAAACAGTCATTTTACCC
* * *
72701147 CATAAGGGCAAAATAATTATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCC
* * * *
72701174 CATAAGGGGAAAACAATTATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCC
* *
72701201 CATAAGGGCAAAACAATCATTTTATCC
1 CATAAGGGCAAAACAGTCATTTTACCC
* * * *
72701228 TATAAGGACAAAACAGTTATTTTACCA
1 CATAAGGGCAAAACAGTCATTTTACCC
* *
72701255 CATAAGGGAAAAACAATCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCC
*
72701282 CATAAGGGCAAAAGAGTCATTTTA
1 CATAAGGGCAAAACAGTCATTTTA
72701306 TCAATTAAGG
Statistics
Matches: 200, Mismatches: 40, Indels: 2
0.83 0.17 0.01
Matches are distributed among these distances:
27 176 0.88
28 24 0.12
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (27 bp):
CATAAGGGCAAAACAGTCATTTTACCC
Found at i:72706928 original size:20 final size:20
Alignment explanation
Indices: 72706903--72706982 Score: 64
Period size: 20 Copynumber: 4.2 Consensus size: 20
72706893 CATTTCACTC
72706903 TCAAT-CATATAAACAGTAAT
1 TCAATCCATAT-AACAGTAAT
*
72706923 TCAAT-C-GATAACAGTAACT
1 TCAATCCATATAACAGTAA-T
* *
72706942 T--ATCCATTTAAACAGTACT
1 TCAATCCATAT-AACAGTAAT
72706961 TC-ATCCATATAACAGTAAT
1 TCAATCCATATAACAGTAAT
72706980 TCA
1 TCA
72706983 TCTGTGTAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
17 2 0.04
18 9 0.19
19 17 0.35
20 20 0.42
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.31
Consensus pattern (20 bp):
TCAATCCATATAACAGTAAT
Found at i:72706974 original size:19 final size:19
Alignment explanation
Indices: 72706930--72706984 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
72706920 AATTCAATCG
72706930 ATAACAGTAACTT-ATCCAT
1 ATAACAGT-ACTTCATCCAT
*
72706949 TTAAACAGTACTTCATCCAT
1 AT-AACAGTACTTCATCCAT
*
72706969 ATAACAGTAATTCATC
1 ATAACAGTACTTCATC
72706985 TGTGTAACAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 18 0.58
20 13 0.42
ACGTcount: A:0.40, C:0.22, G:0.05, T:0.33
Consensus pattern (19 bp):
ATAACAGTACTTCATCCAT
Found at i:72713792 original size:40 final size:40
Alignment explanation
Indices: 72713694--72713956 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
72713684 TCCTCGTTCA
* * * * *
72713694 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
72713733 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
72713773 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
72713813 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
72713853 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
72713893 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
72713933 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
72713957 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:72724757 original size:48 final size:48
Alignment explanation
Indices: 72724699--72724838 Score: 235
Period size: 48 Copynumber: 2.9 Consensus size: 48
72724689 AATATATATA
*
72724699 TTAGTTTGCAATTTACCGTGTTATGAAACGACATAAATCCAACGACGT
1 TTAGTATGCAATTTACCGTGTTATGAAACGACATAAATCCAACGACGT
* *
72724747 TTAGTATGCAACTTACCGTGTTATGAAACGACATAAATCCAATGACGT
1 TTAGTATGCAATTTACCGTGTTATGAAACGACATAAATCCAACGACGT
* *
72724795 TTAGTATGCAATTTACTGTGTTATAAAACGACATAAATCCAACG
1 TTAGTATGCAATTTACCGTGTTATGAAACGACATAAATCCAACG
72724839 GTGTACAACA
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (48 bp):
TTAGTATGCAATTTACCGTGTTATGAAACGACATAAATCCAACGACGT
Found at i:72726217 original size:20 final size:20
Alignment explanation
Indices: 72726184--72726222 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
72726174 GCTATATGGT
72726184 TTGGCTTGTGTTATGGTATC
1 TTGGCTTGTGTTATGGTATC
72726204 TTGG-TTGTGATTATGGTAT
1 TTGGCTTGTG-TTATGGTAT
72726223 TTTGAATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.13, C:0.05, G:0.31, T:0.51
Consensus pattern (20 bp):
TTGGCTTGTGTTATGGTATC
Found at i:72729950 original size:20 final size:20
Alignment explanation
Indices: 72729888--72730001 Score: 79
Period size: 20 Copynumber: 5.7 Consensus size: 20
72729878 GAGTTACCAG
* * *
72729888 AGTATAAACAGGGGCACAAA
1 AGTACAAACAGGGGTACTAA
* * *
72729908 AGTGCAATCAGGGGTA-TCGA
1 AGTACAAACAGGGGTACT-AA
72729928 AGTACAAACAGGGGTACTAA
1 AGTACAAACAGGGGTACTAA
* **
72729948 AGTACAAACAAGGCCAC-ATA
1 AGTACAAACAGGGGTACTA-A
* *
72729968 AGTACAATCAGGGGTACTGA
1 AGTACAAACAGGGGTACTAA
* *
72729988 AGTATAAATAGGGG
1 AGTACAAACAGGGG
72730002 CATGTAAGTG
Statistics
Matches: 70, Mismatches: 20, Indels: 8
0.71 0.20 0.08
Matches are distributed among these distances:
19 1 0.01
20 68 0.97
21 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.27, T:0.16
Consensus pattern (20 bp):
AGTACAAACAGGGGTACTAA
Found at i:72729990 original size:60 final size:60
Alignment explanation
Indices: 72729888--72730001 Score: 149
Period size: 60 Copynumber: 1.9 Consensus size: 60
72729878 GAGTTACCAG
* * * *
72729888 AGTATAAACAGGGGCACAAAAGTGCAATCAGGGGTATCGAAGTACAAACAGGGGTACTAA
1 AGTACAAACAAGGCCACAAAAGTACAATCAGGGGTATCGAAGTACAAACAGGGGTACTAA
* * *
72729948 AGTACAAACAAGGCCACATAAGTACAATCAGGGGTA-CTGAAGTATAAATAGGGG
1 AGTACAAACAAGGCCACAAAAGTACAATCAGGGGTATC-GAAGTACAAACAGGGG
72730002 CATGTAAGTG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
59 1 0.02
60 45 0.98
ACGTcount: A:0.42, C:0.15, G:0.27, T:0.16
Consensus pattern (60 bp):
AGTACAAACAAGGCCACAAAAGTACAATCAGGGGTATCGAAGTACAAACAGGGGTACTAA
Found at i:72732371 original size:101 final size:101
Alignment explanation
Indices: 72732196--72732398 Score: 316
Period size: 101 Copynumber: 2.0 Consensus size: 101
72732186 GGCAAACGAG
* * *
72732196 ATATGAAATACATTGTGATTCACTCTCACTTCCACTATGGAATCATAACAGGCTATAAAAATCTC
1 ATATGAAATACATCGTGACTCACTCTCACTTCCACTATGGAATCATAACAGGCTATAAAAATCCC
* *
72732261 GATGGTACCTGATGATCTGCTTTTACCTGCTGAAAA
66 GACGGTACCTGATGATCTGCTTTTACCTGCTAAAAA
* * *
72732297 ATATGAAATTCATCGTGACTCACTCTCACTTCCACTATGGAATCATAATAGGCTATAATAATCCC
1 ATATGAAATACATCGTGACTCACTCTCACTTCCACTATGGAATCATAACAGGCTATAAAAATCCC
* *
72732362 GACGGTACCTGATGCTCTGTTTTTACCTGCTAAAAA
66 GACGGTACCTGATGATCTGCTTTTACCTGCTAAAAA
72732398 A
1 A
72732399 CTCACAAATC
Statistics
Matches: 92, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 92 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (101 bp):
ATATGAAATACATCGTGACTCACTCTCACTTCCACTATGGAATCATAACAGGCTATAAAAATCCC
GACGGTACCTGATGATCTGCTTTTACCTGCTAAAAA
Found at i:72735081 original size:11 final size:11
Alignment explanation
Indices: 72735065--72735096 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
72735055 CCGGGGTGGC
72735065 GTTTATTTTTT
1 GTTTATTTTTT
72735076 GTTTA-TTTTT
1 GTTTATTTTTT
72735086 GTTTATTTTTT
1 GTTTATTTTTT
72735097 TACATAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.81
Consensus pattern (11 bp):
GTTTATTTTTT
Found at i:72737650 original size:20 final size:20
Alignment explanation
Indices: 72737625--72737665 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
72737615 AAGTCCTCGT
72737625 TGGCTAAAGTGAGCAAATAC
1 TGGCTAAAGTGAGCAAATAC
72737645 TGGCTAAAGTGAGCAAATAC
1 TGGCTAAAGTGAGCAAATAC
72737665 T
1 T
72737666 ATGCACCAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (20 bp):
TGGCTAAAGTGAGCAAATAC
Found at i:72738745 original size:39 final size:39
Alignment explanation
Indices: 72738689--72738815 Score: 218
Period size: 39 Copynumber: 3.3 Consensus size: 39
72738679 CCAGCAATAT
*
72738689 GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAT
1 GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAG
* * *
72738728 GTCTGCTAGGTATAAACCTAAACTTAACACCAGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAG
72738767 GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAG
72738806 GCCTGCTAGG
1 GCCTGCTAGG
72738816 CTCATGGCCC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.20
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTAACACCGGCACGAG
Found at i:72741280 original size:29 final size:29
Alignment explanation
Indices: 72741248--72741315 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
72741238 AAGTCTACAT
* *
72741248 ACATGCATATGGCCCACTAGGCCCGAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
** *
72741277 ACATTTGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
72741306 ACATTCATAT
1 ACATTCATAT
72741316 ACATGCTTTC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:72741546 original size:16 final size:16
Alignment explanation
Indices: 72741525--72741558 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
72741515 ATAGCCAAAC
72741525 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
*
72741541 TTTCAGCTTTTCGTCA
1 TTTCAGCTTTTCGACA
72741557 TT
1 TT
72741559 CCGGGATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.24, G:0.12, T:0.50
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:72745830 original size:40 final size:40
Alignment explanation
Indices: 72745736--72745920 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
72745726 TATTCGAATG
* *
72745736 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCGA-GTGACT
* * * * *
72745777 ATAACTGGACTAAGATCCGAAGGCATTCGTGCGCGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAG-TGACT
* * *
72745817 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTGACT
* * *
72745857 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGTGACT
*
72745897 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
72745921 CTTGTGCAAG
Statistics
Matches: 119, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
39 1 0.01
40 90 0.76
41 27 0.23
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTGACT
Found at i:72745906 original size:80 final size:81
Alignment explanation
Indices: 72745736--72745920 Score: 232
Period size: 80 Copynumber: 2.3 Consensus size: 81
72745726 TATTCGAATG
* * * *
72745736 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACTGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
72745801 ATTCGTGCGCGTTGCT
66 ATTCATGCGAGTTGCC
* *
72745817 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
72745880 CATTTATGCTAG-TGACC
65 CATTCATGCGAGTTG-CC
72745897 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
72745921 CTTGTGCAAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 3 0.03
80 56 0.62
81 32 0.35
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCC
Found at i:72753899 original size:40 final size:40
Alignment explanation
Indices: 72753805--72753989 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
72753795 TATTCAAATG
*
72753805 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * * *
72753846 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
72753886 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
72753926 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
72753966 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
72753990 CTTGTGCAAG
Statistics
Matches: 121, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
40 93 0.77
41 27 0.22
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:72753978 original size:80 final size:81
Alignment explanation
Indices: 72753805--72753989 Score: 248
Period size: 80 Copynumber: 2.3 Consensus size: 81
72753795 TATTCAAATG
* * *
72753805 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
72753870 ATTCGTGCGAGTTACT
66 ATTCATGCGAGTGACC
* * *
72753886 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
72753949 CATTTATGCTAGTGACC
65 CATTCATGCGAGTGACC
72753966 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
72753990 CTTGTGCAAG
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 1 0.01
80 59 0.65
81 31 0.34
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTGACC
Found at i:72757096 original size:29 final size:27
Alignment explanation
Indices: 72757071--72757158 Score: 113
Period size: 29 Copynumber: 3.1 Consensus size: 27
72757061 CATACATGTA
*
72757071 CATGGCCCACTAGGCCCAAATCACATT
1 CATGGCCCATTAGGCCCAAATCACATT
*
72757098 CGTATGGCCCATTAGGCCCGAATCACATTT
1 C--ATGGCCCATTAGGCCCAAATCACA-TT
*
72757128 GTATGGCCCATTAGGCCCAAATCACATT
1 -CATGGCCCATTAGGCCCAAATCACATT
72757156 CAT
1 CAT
72757159 CTACATGCTT
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
27 3 0.06
28 2 0.04
29 45 0.87
30 2 0.04
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (27 bp):
CATGGCCCATTAGGCCCAAATCACATT
Found at i:72761291 original size:40 final size:40
Alignment explanation
Indices: 72761207--72761428 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
72761197 TTGAATGATG
* * * *
72761207 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
72761247 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
72761287 TCCGGGCTAAG--CCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72761324 TCCGGGTTAAGTCCCG-AGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72761363 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72761404 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72761429 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
37 25 0.15
38 14 0.09
39 36 0.22
40 77 0.48
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72761353 original size:76 final size:79
Alignment explanation
Indices: 72761207--72761428 Score: 267
Period size: 76 Copynumber: 2.8 Consensus size: 79
72761197 TTGAATGATG
* * * * *
72761207 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
72761270 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
*
72761287 TCCGGGCTAAG-CCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCG-AGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTT
*
72761348 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* *
72761363 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
72761428 G
65 G
72761429 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
76 33 0.27
77 17 0.14
78 23 0.19
79 28 0.23
80 22 0.18
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:72761450 original size:79 final size:78
Alignment explanation
Indices: 72761207--72761461 Score: 200
Period size: 79 Copynumber: 3.3 Consensus size: 78
72761197 TTGAATGATG
* * * * * * * *
72761207 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAATCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCG-AGGCATT
** *
72761271 TGTGCGAGAT-ACTAAT
63 TGAACGAG-TGACTAAA
* * * *
72761287 TCCGGGCT-AA-GCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAGGCATTTGT
1 TCCGGGTTAAATCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAGGCATTTGA
* *
72761350 GCGAGTTACTAAA
66 ACGAGTGACTAAA
* *
72761363 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAATCCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCG-AGGCATT
*
72761427 TGAACGAG-GAGCTATA
63 TGAACGAGTGA-CTAAA
*
72761443 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
72761462 TACGTGATTT
Statistics
Matches: 146, Mismatches: 21, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
75 1 0.01
76 28 0.19
77 20 0.14
78 23 0.16
79 44 0.30
80 30 0.21
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAATCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAGGCATTTGA
ACGAGTGACTAAA
Found at i:72769186 original size:40 final size:39
Alignment explanation
Indices: 72769102--72769322 Score: 249
Period size: 40 Copynumber: 5.7 Consensus size: 39
72769092 TTGAATGATG
* *
72769102 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTA-A
*
72769142 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAA
*
72769181 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC--GATACTAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
*
72769218 TCCGGG-TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACT-AA
* *
72769257 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-A
* *
72769297 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72769323 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 10, Indels: 22
0.83 0.05 0.11
Matches are distributed among these distances:
35 4 0.03
36 22 0.14
37 8 0.05
38 5 0.03
39 25 0.16
40 85 0.53
41 10 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
Found at i:72769240 original size:75 final size:79
Alignment explanation
Indices: 72769102--72769322 Score: 265
Period size: 75 Copynumber: 2.8 Consensus size: 79
72769092 TTGAATGATG
* * * * *
72769102 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGT-ACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
72769165 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
*
72769182 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGA-TACTA-ATCCGGG-TAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
*
72769243 TGCGAGTTACTAAA
66 TGCGAGATACTAAA
* * *
72769257 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAG-TACTATAACCGGGCTAAGTCCCGAAGGCATTT
72769322 G
65 G
72769323 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
74 1 0.01
75 39 0.31
76 24 0.19
77 3 0.02
78 6 0.05
79 16 0.13
80 35 0.28
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:72772870 original size:39 final size:41
Alignment explanation
Indices: 72772769--72772951 Score: 213
Period size: 39 Copynumber: 4.6 Consensus size: 41
72772759 TCGAATGATG
* * *
72772769 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
72772809 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
*
72772849 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
72772888 TCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
72772927 ACCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72772952 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
38 7 0.06
39 68 0.55
40 39 0.31
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Done.