Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 221 of 352
Found at i:72772958 original size:78 final size:78
Alignment explanation
Indices: 72772822--72772974 Score: 211
Period size: 78 Copynumber: 2.0 Consensus size: 78
72772812 GGACTAAGAT
* **
72772822 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTA-CTA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAG-TAGCTA
72772886 AATCCGGTTAAGTC
65 AATCCGGTTAAGTC
* * *
72772900 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCGAAGGCATTTGAACGAGTAGCTA
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAGCCCGAAGGCATTGGAACGAGTAGCTA
*
72772964 TATCCGGTTAA
65 AATCCGGTTAA
72772975 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
77 4 0.06
78 62 0.94
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTAGCTAA
ATCCGGTTAAGTC
Found at i:72778422 original size:18 final size:18
Alignment explanation
Indices: 72778399--72778435 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
72778389 ATGGACATAT
*
72778399 TGATGCATACTTTAAAAA
1 TGATGCACACTTTAAAAA
*
72778417 TGATGCACATTTTAAAAA
1 TGATGCACACTTTAAAAA
72778435 T
1 T
72778436 TTTCCTACCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (18 bp):
TGATGCACACTTTAAAAA
Found at i:72778557 original size:22 final size:23
Alignment explanation
Indices: 72778516--72778590 Score: 66
Period size: 22 Copynumber: 3.4 Consensus size: 23
72778506 TGGACTAGCC
* **
72778516 ACCACTGATTTGGAGTTAAACT-
1 ACCACTGATTTGTAAATAAACTA
* *
72778538 ATCATTGATTTGTAAATAAA-TA
1 ACCACTGATTTGTAAATAAACTA
*
72778560 ACCACTGATTTGTAGATAAACT-
1 ACCACTGATTTGTAAATAAACTA
*
72778582 GCCACTGAT
1 ACCACTGAT
72778591 AACACTGATG
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
21 1 0.02
22 40 0.95
23 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (23 bp):
ACCACTGATTTGTAAATAAACTA
Found at i:72781584 original size:30 final size:31
Alignment explanation
Indices: 72781531--72781604 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 31
72781521 ATTAGAATCA
* * *
72781531 AGCTCAATGAGCTAGCATCAAACCGA-ATTG
1 AGCTCATTGAGCTAGCATAAAACCCAGATTG
72781561 AGCTCCATTGAGCTAG-ATAAAACCCAGATTG
1 AGCT-CATTGAGCTAGCATAAAACCCAGATTG
*
72781592 AGCTCGTTGAGCT
1 AGCTCATTGAGCT
72781605 GAAATTAAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 20 0.53
31 18 0.47
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (31 bp):
AGCTCATTGAGCTAGCATAAAACCCAGATTG
Found at i:72785376 original size:33 final size:33
Alignment explanation
Indices: 72785335--72785405 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
72785325 AACCCCAATT
*
72785335 CCTTGAACCTTAAACTCAAAATTCAAA-CTCAAA
1 CCTTGAACCTTAAA-TCAAAATCCAAACCTCAAA
* * *
72785368 CCTTGAACCTTAGATCCAAATCCAAACCTCGAA
1 CCTTGAACCTTAAATCAAAATCCAAACCTCAAA
72785401 CCTTG
1 CCTTG
72785406 GGATTCAAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 10 0.30
33 23 0.70
ACGTcount: A:0.38, C:0.31, G:0.07, T:0.24
Consensus pattern (33 bp):
CCTTGAACCTTAAATCAAAATCCAAACCTCAAA
Found at i:72785754 original size:19 final size:19
Alignment explanation
Indices: 72785730--72785769 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
72785720 GACACTATTT
72785730 TATTAGTGCCTATAAACTA
1 TATTAGTGCCTATAAACTA
72785749 TATTAGTGCCTATAAACTA
1 TATTAGTGCCTATAAACTA
72785768 TA
1 TA
72785770 CTTTTTAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TATTAGTGCCTATAAACTA
Found at i:72788274 original size:44 final size:43
Alignment explanation
Indices: 72788224--72788381 Score: 196
Period size: 43 Copynumber: 3.7 Consensus size: 43
72788214 ATGTGTTATT
72788224 GTGTAAGACCACGTCTGGGACATTGGCATCGAT-TTATGATTTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATC-ATATT-TGATTTAC
*
72788268 GTGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTT-C
1 GTGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTTAC
** *
72788310 GTGTAAGACCTTGTCTGGGACAATGGCATCAATATTTGA-TTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATC-ATATTTGATTTAC
* * * *
72788353 ATGTAAGACCATGTATGAGACATTGGCAT
1 GTGTAAGACCACGTCTGGGACATTGGCAT
72788382 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
42 29 0.29
43 41 0.41
44 31 0.31
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTTAC
Found at i:72790690 original size:97 final size:97
Alignment explanation
Indices: 72790567--72790770 Score: 347
Period size: 97 Copynumber: 2.1 Consensus size: 97
72790557 AAAATTTCAT
* * *
72790567 TATGAAATTTTAATGTTTAAATGGTTAATTAAATGAAA-AGAATTAAATCGTAAAAATAGTAAAA
1 TATGAAATTTCAATATTTAAATGGTTAATTAAATGAAACAG-ACTAAATCGTAAAAATAGTAAAA
72790631 GTTAAGTTCTATTAGTTAAAAGGGTCAAATGGC
65 GTTAAGTTCTATTAGTTAAAAGGGTCAAATGGC
* *
72790664 TATGAAATTTCAATATTTAAATGGTTAATTAAATTAAACAGACTAAATCGTAAAAATGGTAAAAG
1 TATGAAATTTCAATATTTAAATGGTTAATTAAATGAAACAGACTAAATCGTAAAAATAGTAAAAG
72790729 TTAAGTTCTATTAGTTAAAAGGGTCAAATGGC
66 TTAAGTTCTATTAGTTAAAAGGGTCAAATGGC
72790761 TATGAAATTT
1 TATGAAATTT
72790771 TAAACTAAGG
Statistics
Matches: 101, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
97 99 0.98
98 2 0.02
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.34
Consensus pattern (97 bp):
TATGAAATTTCAATATTTAAATGGTTAATTAAATGAAACAGACTAAATCGTAAAAATAGTAAAAG
TTAAGTTCTATTAGTTAAAAGGGTCAAATGGC
Found at i:72794404 original size:64 final size:64
Alignment explanation
Indices: 72794324--72794444 Score: 190
Period size: 64 Copynumber: 1.9 Consensus size: 64
72794314 CATTAGTTAT
* * *
72794324 ATATGTACTTACCATACATGCAATATTAAAGCCTTTAAAATATG-GTATATATTGCATAATTTGC
1 ATATGAACTTACCATACATGCAATATTAAAGCATTTAAAATA-GAGTACATATTGCATAATTTGC
*
72794388 ATATGAACTTACCATACATGCAATATTTAAGCATTTAAAATAGAGTACATATTGCAT
1 ATATGAACTTACCATACATGCAATATTAAAGCATTTAAAATAGAGTACATATTGCAT
72794445 TACTCGCATA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
63 1 0.02
64 51 0.98
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.36
Consensus pattern (64 bp):
ATATGAACTTACCATACATGCAATATTAAAGCATTTAAAATAGAGTACATATTGCATAATTTGC
Found at i:72794454 original size:64 final size:64
Alignment explanation
Indices: 72794324--72794464 Score: 185
Period size: 64 Copynumber: 2.2 Consensus size: 64
72794314 CATTAGTTAT
* * * * *
72794324 ATATGTACTTACCATACATGCAATATTAAAGCCTTTAAAATATGGTATATATTGCATAATTTGC
1 ATATGAACTTACCATACATGCAATATTAAAGCATTTAAAATATGGTACATATTGCATAACTCGC
* *
72794388 ATATGAACTTACCATACATGCAATATTTAAGCATTTAAAATA-GAGTACATATTGCATTACTCGC
1 ATATGAACTTACCATACATGCAATATTAAAGCATTTAAAATATG-GTACATATTGCATAACTCGC
* *
72794452 ATACGAGCTTACC
1 ATATGAACTTACC
72794465 TCGATACCAA
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
63 1 0.01
64 66 0.99
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (64 bp):
ATATGAACTTACCATACATGCAATATTAAAGCATTTAAAATATGGTACATATTGCATAACTCGC
Found at i:72796452 original size:43 final size:43
Alignment explanation
Indices: 72796404--72796518 Score: 169
Period size: 43 Copynumber: 2.7 Consensus size: 43
72796394 ATGTGATTAA
*
72796404 ATGTAAGACCATGTCTGGGACATTGGTATCGTTATTCAAT-TT
1 ATGTAAGACCATGTCTGGGACATTGGCATCGTTATTCAATCTT
* *
72796446 CGTGTAAGACCATGTCTGGGACATTGGCATCGTTATTCGATCTT
1 -ATGTAAGACCATGTCTGGGACATTGGCATCGTTATTCAATCTT
* *
72796490 ATGTAAGACCTTGTCTGGGACAGTGGCAT
1 ATGTAAGACCATGTCTGGGACATTGGCAT
72796519 TGATATGTGA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 63 0.97
44 2 0.03
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.34
Consensus pattern (43 bp):
ATGTAAGACCATGTCTGGGACATTGGCATCGTTATTCAATCTT
Found at i:72799569 original size:42 final size:42
Alignment explanation
Indices: 72799519--72799694 Score: 187
Period size: 42 Copynumber: 4.0 Consensus size: 42
72799509 CTTCATTTTC
** *
72799519 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACAT-A
*
72799562 T-GATGCCATAGCCCAACTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
*
72799603 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATGACATATCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC---AT---AT-TCACATA
* *
72799652 TCGATGCCATAACCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC-ATATTCACATA
72799693 TC
1 TC
72799695 TCACTGATGC
Statistics
Matches: 117, Mismatches: 8, Indels: 18
0.82 0.06 0.13
Matches are distributed among these distances:
41 11 0.09
42 63 0.54
43 2 0.02
45 2 0.02
47 1 0.01
48 2 0.02
49 36 0.31
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
Found at i:72799668 original size:49 final size:49
Alignment explanation
Indices: 72799590--72799771 Score: 189
Period size: 49 Copynumber: 3.8 Consensus size: 49
72799580 ATGGTCTTAC
* * *
72799590 ACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATG
1 ACATA-TCACATATCGATGCCATATCCCAGATATGGTCTTACACGTAATG
* * *
72799640 ACATATCACATATCGATGCCATAACCCAGCTATGGTCTTACACG-AATC
1 ACATATCACATATCGATGCCATATCCCAGATATGGTCTTACACGTAATG
* * *
72799688 ACATATCTCA-CT-GATGCCATATCCCAGATATGGTCTTATACAGT-A-G
1 ACATATCACATATCGATGCCATATCCCAGATATGGTCTTACAC-GTAATG
* *
72799734 -CATAT-ATCACACCGATGCCATATCCCAGATATGGTCTT
1 ACATATCA-CATATCGATGCCATATCCCAGATATGGTCTT
72799772 GTACGGAAAT
Statistics
Matches: 115, Mismatches: 12, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
45 7 0.06
46 26 0.23
47 28 0.24
48 12 0.10
49 37 0.32
50 5 0.04
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (49 bp):
ACATATCACATATCGATGCCATATCCCAGATATGGTCTTACACGTAATG
Found at i:72799721 original size:46 final size:47
Alignment explanation
Indices: 72799604--72799771 Score: 180
Period size: 47 Copynumber: 3.6 Consensus size: 47
72799594 ATTCATATAT
* * *
72799604 CGATGCCATAGCCCAGCTATGGTCTTACAC-GTAATG-ACATATCACATAT
1 CGATGCCATATCCCAGATATGGTCTTACACAG-AA-GCACATATCAC--AC
* * * *
72799653 CGATGCCATAACCCAGCTATGGTCTTACAC-GAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
* * * *
72799699 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
72799746 CGATGCCATATCCCAGATATGGTCTT
1 CGATGCCATATCCCAGATATGGTCTT
72799772 GTACGGAAAT
Statistics
Matches: 104, Mismatches: 13, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
46 27 0.26
47 37 0.36
48 10 0.10
49 30 0.29
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (47 bp):
CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
Found at i:72799870 original size:31 final size:31
Alignment explanation
Indices: 72799794--72799880 Score: 122
Period size: 31 Copynumber: 2.8 Consensus size: 31
72799784 CTTGTCACTT
* *
72799794 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAC
* *
72799825 GTAGTCGGTA-CTACCACTTTTCACTGATCAC
1 GTAG-CCGAAGCTACCACTTTTCACTGATCAC
72799856 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
72799881 TGTCATTTGT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
30 3 0.06
31 42 0.88
32 3 0.06
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAC
Found at i:72799967 original size:50 final size:50
Alignment explanation
Indices: 72799856--72800032 Score: 277
Period size: 50 Copynumber: 3.5 Consensus size: 50
72799846 CACTGATCAC
* *
72799856 GTAGCCGAAGCTACCACTTTTCACTTGTCA-TTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTACCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
72799907 GTAGCCGAAGCTACCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTACCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
*
72799957 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGGA-AAGT
1 GTAGCCGAAGCTACCACTTATCACTTTCACTTTTCCTTGATCA-GATAAGT
*
72800007 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTACCACTTATCACTT
72800033 GTTGCCATGG
Statistics
Matches: 121, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
50 91 0.75
51 30 0.25
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (50 bp):
GTAGCCGAAGCTACCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
Found at i:72805777 original size:64 final size:64
Alignment explanation
Indices: 72805703--72805843 Score: 187
Period size: 64 Copynumber: 2.2 Consensus size: 64
72805693 CATTAATTAT
* * * * *
72805703 ATATGTACTTACCATACATGCAATA-TTAAAGCATTTAAAGTATG-GTACATATTGCATAATTTG
1 ATATGAACTTACCATAAATGCAATATTTAAA-CATTTAAAATA-GAGTACATATTGCATAACTCG
72805766 C
64 C
* *
72805767 ATATGAACTTACCATAAATGCAATATTTAAACATTTAAAATAGATTACATATTGCATTACTCGC
1 ATATGAACTTACCATAAATGCAATATTTAAACATTTAAAATAGAGTACATATTGCATAACTCGC
72805831 ATATGAACTTACC
1 ATATGAACTTACC
72805844 CCGATACTAA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
63 1 0.01
64 62 0.91
65 5 0.07
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.35
Consensus pattern (64 bp):
ATATGAACTTACCATAAATGCAATATTTAAACATTTAAAATAGAGTACATATTGCATAACTCGC
Found at i:72808576 original size:33 final size:34
Alignment explanation
Indices: 72808507--72808577 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
72808497 AACAGTGCAT
* * *
72808507 ACAGTAACGGTCTGGGCCTAAGCCCTATTCATTA
1 ACAGTAACAGTCTGGGCCTAAGCCCTATGCAGTA
* *
72808541 ACAGT-ACAGTCTTGGCCTAAGCCCTCTGCAGTA
1 ACAGTAACAGTCTGGGCCTAAGCCCTATGCAGTA
72808574 ACAG
1 ACAG
72808578 AGTTAGCCTA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 27 0.84
34 5 0.16
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (34 bp):
ACAGTAACAGTCTGGGCCTAAGCCCTATGCAGTA
Found at i:72810092 original size:28 final size:27
Alignment explanation
Indices: 72810015--72810095 Score: 74
Period size: 27 Copynumber: 2.9 Consensus size: 27
72810005 GTCACCAGAT
*
72810015 ACAGATATTTTGTGGCAGTGCCACCAAA
1 ACAGATAATTTGTGGCA-TGCCACCAAA
** * * *
72810043 ACAGAT-ATACGTGGCAGGGCCACTAGA
1 ACAGATAATTTGTGGCA-TGCCACCAAA
72810070 ACAGATAATTTGTGGCATAGCCACCA
1 ACAGATAATTTGTGGCAT-GCCACCA
72810096 GGACGCTTCC
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
27 21 0.51
28 20 0.49
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
ACAGATAATTTGTGGCATGCCACCAAA
Found at i:72810250 original size:28 final size:28
Alignment explanation
Indices: 72810203--72810267 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
72810193 AAATTAACCC
*
72810203 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
72810231 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
72810259 TAGGGGTAT
1 TAGGGGTAT
72810268 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:72817877 original size:27 final size:28
Alignment explanation
Indices: 72817820--72817889 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
72817810 GTGATAGAGT
** *
72817820 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTACGTGGCAGGGC
72817849 CACCAGAACAGATA-TACGTGGCAGGGC
1 CACCAGAACAGATATTACGTGGCAGGGC
72817876 CACCAGAACAGATA
1 CACCAGAACAGATA
72817890 ATTTATGGCA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 24 0.63
28 7 0.18
29 7 0.18
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.17
Consensus pattern (28 bp):
CACCAGAACAGATATTACGTGGCAGGGC
Found at i:72817907 original size:28 final size:27
Alignment explanation
Indices: 72817820--72817909 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
72817810 GTGATAGAGT
*
72817820 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
72817849 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
72817876 CACCAGAACAGATAATTTATGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
72817904 CACCAG
1 CACCAG
72817910 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 23 0.45
28 21 0.41
29 7 0.14
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:72818062 original size:28 final size:28
Alignment explanation
Indices: 72818014--72818079 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
72818004 AAAATTAACT
*
72818014 ATAGGGGTATAGAGGTCATTTTGCATAC
1 ATAGGGGTATAGAGGTAATTTTGCATAC
72818042 ATAGGGGTATA-ATGGTAATTTTGCATAC
1 ATAGGGGTATAGA-GGTAATTTTGCATAC
72818070 ATAGGGGTAT
1 ATAGGGGTAT
72818080 TCTAGTAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 35 0.97
ACGTcount: A:0.30, C:0.08, G:0.29, T:0.33
Consensus pattern (28 bp):
ATAGGGGTATAGAGGTAATTTTGCATAC
Found at i:72840068 original size:26 final size:27
Alignment explanation
Indices: 72840019--72840076 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
72840009 CTTAGCTCTA
72840019 TGAGCTTCCCGATTATATGACTCTTCG
1 TGAGCTTCCCGATTATATGACTCTTCG
* * * *
72840046 TGAGTTTCCC-ATTATTTGGCTCTTTG
1 TGAGCTTCCCGATTATATGACTCTTCG
72840072 TGAGC
1 TGAGC
72840077 ACCTAATATG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.16, C:0.22, G:0.21, T:0.41
Consensus pattern (27 bp):
TGAGCTTCCCGATTATATGACTCTTCG
Found at i:72848580 original size:48 final size:48
Alignment explanation
Indices: 72848478--72848715 Score: 368
Period size: 48 Copynumber: 4.9 Consensus size: 48
72848468 CAAGATAAAT
* * * ***
72848478 ATATATATGTGTGGTAAAGCCGAATGGTGTGAATAAAAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGG-CT-AATGTGAAATATGTATGAG
72848528 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
72848576 ATATGTACATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
72848624 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
72848672 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
72848716 GAAGATGTGT
Statistics
Matches: 177, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
48 151 0.85
49 1 0.01
50 25 0.14
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:72848946 original size:37 final size:37
Alignment explanation
Indices: 72848845--72848947 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
72848835 GGAAATATAT
*
72848845 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
72848882 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
72848919 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
72848948 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:72855311 original size:47 final size:47
Alignment explanation
Indices: 72855254--72855640 Score: 486
Period size: 47 Copynumber: 8.1 Consensus size: 47
72855244 TTAGGATTTT
** * *
72855254 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
72855301 ATATGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATA--TGTGATAAGGCCGAATGGCCA
** * * *
72855352 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
72855399 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATA--TGTGATAAGGCCGAATGGCCA
** *
72855450 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
72855497 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * * *
72855544 CTGTGATGAATGTGAACATGCATATATGAGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
72855591 ATGTGATGAATGTGAACATGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
72855638 ATG
1 ATG
72855641 AGAAATGTGT
Statistics
Matches: 296, Mismatches: 36, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
47 206 0.70
49 15 0.05
51 75 0.25
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:72855360 original size:98 final size:97
Alignment explanation
Indices: 72855254--72855640 Score: 534
Period size: 98 Copynumber: 4.0 Consensus size: 97
72855244 TTAGGATTTT
** * *
72855254 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATATGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
72855319 TGTATATATATGTGTGATAAGGCCGAATGGCCA
66 TG-ATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
72855352 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCAAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
72855417 TGTATATATATGTGTGATAAGGCCGAATGGCCA
66 TG-ATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
72855450 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
* *
72855514 --ATGTGTATGTGTGATAAGGCCGAATGGCCA
66 TGATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
72855544 CTGTGATGAATGTGAACATGCATATATGAGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
* *
72855609 TG-TATATATGTG-G-TAAAGCCGAATGGCTA
66 TGATATATATGTGTGATAAGGCCGAATGGCCA
72855638 ATG
1 ATG
72855641 AGAAATGTGT
Statistics
Matches: 263, Mismatches: 23, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
94 102 0.39
95 1 0.00
96 8 0.03
97 1 0.00
98 151 0.57
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (97 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
TGATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:72855403 original size:145 final size:144
Alignment explanation
Indices: 72855254--72855640 Score: 525
Period size: 145 Copynumber: 2.7 Consensus size: 144
72855244 TTAGGATTTT
* *
72855254 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATATGATGAATGTGAACC
1 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
72855319 TGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 TG-ATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
*
72855384 AAGGCTGAATGGCAA
130 AAGGCCGAATGGCAA
* *
72855399 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--TGTGTATATA--TGAGATAAGGCCGAATGGCCAATGTGATGAATGTG
*** *
72855464 AA-C--ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGT
62 AACCTGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGT
*
72855526 GATAAGGCCGAATGGCCA
127 GATAAGGCCGAATGGCAA
* ** * * *
72855544 CTGTGATGAATGTGAACATGCATATATGAGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
72855609 TG-TATATATGTG-G-TAAAGCCGAATGGCTAATG
66 TGATATATATGTGTGATAAGGCCGAATGGCCAATG
72855641 AGAAATGTGT
Statistics
Matches: 212, Mismatches: 23, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
141 52 0.25
142 1 0.00
143 13 0.06
145 102 0.48
147 9 0.04
148 1 0.00
149 34 0.16
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (144 bp):
ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
TGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
AGGCCGAATGGCAA
Found at i:72855454 original size:24 final size:24
Alignment explanation
Indices: 72855426--72855501 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
72855416 CTGTATATAT
72855426 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
72855450 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
72855473 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
72855497 ATGTG
1 ATGTG
72855502 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:72855750 original size:46 final size:46
Alignment explanation
Indices: 72855614--72855750 Score: 195
Period size: 46 Copynumber: 3.0 Consensus size: 46
72855604 GAACATGTAT
*
72855614 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
* *
72855660 ATATGAGGTAAAGCCGAATGGCTAAT-ACGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGA-GAAATGTGTATGAGATGG
* * * *
72855706 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATG
72855751 TGTATATATA
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
45 1 0.01
46 79 0.99
ACGTcount: A:0.36, C:0.08, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
Found at i:72863079 original size:25 final size:25
Alignment explanation
Indices: 72863043--72863094 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
72863033 CGAGTAAGTT
72863043 AACATAGCTTAGTAAGTTTAAAACA
1 AACATAGCTTAGTAAGTTTAAAACA
*
72863068 AACATAGTTTAGTAAGTTTAAAACA
1 AACATAGCTTAGTAAGTTTAAAACA
72863093 AA
1 AA
72863095 TAGACAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.29
Consensus pattern (25 bp):
AACATAGCTTAGTAAGTTTAAAACA
Found at i:72864009 original size:55 final size:54
Alignment explanation
Indices: 72863941--72864066 Score: 225
Period size: 55 Copynumber: 2.3 Consensus size: 54
72863931 GTAACAGAAT
*
72863941 CAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAA-ATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
72863996 CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCA-AATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
72864051 CAGAATCAGAATCAAA
1 CAGAATCAGAATCAAA
72864067 ATGTGAATGC
Statistics
Matches: 69, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
54 2 0.03
55 66 0.96
56 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (54 bp):
CAGAATCAGAATCAAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
Found at i:72864063 original size:6 final size:6
Alignment explanation
Indices: 72863918--72864043 Score: 136
Period size: 6 Copynumber: 20.8 Consensus size: 6
72863908 AACCAAAATG
*
72863918 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
* *
72863966 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
72864015 AGTAA-C AGAATC AGAATC AGAATC AGAAT
1 AG-AATC AGAATC AGAATC AGAATC AGAAT
72864044 TAGGTGACAG
Statistics
Matches: 103, Mismatches: 6, Indels: 22
0.79 0.05 0.17
Matches are distributed among these distances:
5 8 0.08
6 86 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:72864648 original size:27 final size:26
Alignment explanation
Indices: 72864569--72864651 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
72864559 TCGATCGGTC
* * *
72864569 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
72864595 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
72864622 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
72864649 AAC
1 AAC
72864652 GCTTCTTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:72864925 original size:53 final size:53
Alignment explanation
Indices: 72864851--72865044 Score: 221
Period size: 53 Copynumber: 3.6 Consensus size: 53
72864841 AGGCAAAATG
* *
72864851 GTAATTTTACCCCACAAGGGTATCTT-GGTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTAC-AGGGTAT-TTCGGTAATTCTACCCTATAGGGGTATTTCA
* * * **
72864905 GTATTTCTACCCTACAGGGTATTTCGATAATTCTACCCTACA-GGGTATTTTG
1 GTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
* * *
72864957 GTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAA
1 GTAATTCTACCCTA-CAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC-A
* *
72865012 GAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GTAATTCTACCCTACA-GGGTATTTCGGTAATT
72865045 TCACAATCAA
Statistics
Matches: 117, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
52 22 0.19
53 46 0.39
54 21 0.18
55 28 0.24
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (53 bp):
GTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
Found at i:72864938 original size:26 final size:26
Alignment explanation
Indices: 72864852--72865037 Score: 164
Period size: 27 Copynumber: 6.9 Consensus size: 26
72864842 GGCAAAATGG
* * *
72864852 TAATTTTACCCCACAAGGGTATCTT-GG
1 TAATTCTACCCTAC-AGGGTAT-TTCGA
*
72864879 TAATTCTACCCTATAGGGGTATTTC-A
1 TAATTCTACCCTACA-GGGTATTTCGA
*
72864905 GTATTTCTACCCTACAGGGTATTTCGA
1 -TAATTCTACCCTACAGGGTATTTCGA
* *
72864932 TAATTCTACCCTACAGGGTATTTTGG
1 TAATTCTACCCTACAGGGTATTTCGA
* *
72864958 TAATTCTATCCTATAAGGGTATTTC-A
1 TAATTCTACCCTA-CAGGGTATTTCGA
*
72864984 GTAATTCTACCCTATAGGGGTATTTCAAGA
1 -TAATTCTACCCTACA-GGGTATTTC--GA
72865014 -AATTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACA-GGGTATTTC
72865038 AGTAATTTCA
Statistics
Matches: 133, Mismatches: 16, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
26 48 0.36
27 61 0.46
28 23 0.17
30 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (26 bp):
TAATTCTACCCTACAGGGTATTTCGA
Found at i:72865086 original size:27 final size:27
Alignment explanation
Indices: 72865056--72865436 Score: 439
Period size: 27 Copynumber: 14.1 Consensus size: 27
72865046 CACAATCAAA
**
72865056 GGTAAAATAGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* **
72865083 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** *
72865110 GGTAAAATAGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** *
72865137 GGTAAAATAGTAATTTTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
* *
72865164 GGCAAAACAGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
72865191 GGTAAAATGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
72865218 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* * ** *
72865245 GGTAAAATGGTAATTTTAAAAATTGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
72865272 GGTAAAACGATAATTCTATAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
72865299 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
72865326 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** * *
72865353 GGTAAAATAGTAATTTTGTAAA-CTGAC
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
72865380 GGTAAAACAGTAATT-TGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
72865406 GGTAAAACGGTAATTCTGTAAATCGAT
1 GGTAAAACGGTAATTCTGTAAATCGAG
72865433 GGTA
1 GGTA
72865437 CTTTGGTAAT
Statistics
Matches: 305, Mismatches: 40, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
26 25 0.08
27 277 0.91
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GGTAAAACGGTAATTCTGTAAATCGAG
Found at i:72865141 original size:81 final size:81
Alignment explanation
Indices: 72865056--72865436 Score: 509
Period size: 81 Copynumber: 4.7 Consensus size: 81
72865046 CACAATCAAA
* * *
72865056 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAATAGT
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGT
72865121 AATTCTATAAA-TCGAG
66 AATTCTATAAACT-GAG
* * * * * *
72865137 GGTAAAATAGTAATTTTGTAAA-CTGAGGGCAAAACAGTAATTCTGTAAATCGAGGGTAAAATGG
1 GGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAG
*
72865201 TAATTCTGTAAACTGAG
65 TAATTCTATAAACTGAG
* * * * * *
72865218 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAAAAATTGAGGGTAAAA-CGA
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAG-
72865282 TAATTCTATAAACTGAG
65 TAATTCTATAAACTGAG
*
72865299 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGT
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGT
* * *
72865364 AATTTTGTAAACTGAC
66 AATTCTATAAACTGAG
* *
72865380 GGTAAAACAGTAATT-TGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGATGGTA
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
72865437 CTTTGGTAAT
Statistics
Matches: 264, Mismatches: 31, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
80 42 0.16
81 219 0.83
82 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGT
AATTCTATAAACTGAG
Found at i:72867438 original size:24 final size:24
Alignment explanation
Indices: 72867406--72867461 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
72867396 AAGAAACATT
*
72867406 ATCAGAATT-GGAACCAAAATGAGA
1 ATCAGAATTAGGAA-CAAAATCAGA
* *
72867430 ATCAGAATTAGTAACAGAATCAGA
1 ATCAGAATTAGGAACAAAATCAGA
72867454 ATCAGAAT
1 ATCAGAAT
72867462 CAATATTAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 25 0.89
25 3 0.11
ACGTcount: A:0.50, C:0.12, G:0.18, T:0.20
Consensus pattern (24 bp):
ATCAGAATTAGGAACAAAATCAGA
Found at i:72867463 original size:30 final size:30
Alignment explanation
Indices: 72867427--72867557 Score: 149
Period size: 30 Copynumber: 4.2 Consensus size: 30
72867417 AACCAAAATG
72867427 AGAATCAGAATTAGTAACAGAATCAGAATC
1 AGAATCAGAATTAGTAACAGAATCAGAATC
72867457 AGAATCA-ATATTAGTAACAGAATCA-AATC
1 AGAATCAGA-ATTAGTAACAGAATCAGAATC
* *
72867486 AGAATCAGAATCACAGAACAGAACAGAATCAGAATC
1 AGAATCAGAAT--TAG----TAACAGAATCAGAATC
*
72867522 AGAATCAGAATTAGGTGACAGAATCAGAATC
1 AGAATCAGAATTA-GTAACAGAATCAGAATC
72867553 AGAAT
1 AGAAT
72867558 GTGAATGCAA
Statistics
Matches: 86, Mismatches: 5, Indels: 19
0.78 0.05 0.17
Matches are distributed among these distances:
29 14 0.16
30 24 0.28
31 21 0.24
34 1 0.01
35 11 0.13
36 15 0.17
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (30 bp):
AGAATCAGAATTAGTAACAGAATCAGAATC
Found at i:72867493 original size:35 final size:36
Alignment explanation
Indices: 72867444--72867532 Score: 128
Period size: 35 Copynumber: 2.5 Consensus size: 36
72867434 GAATTAGTAA
* **
72867444 CAGAATCAGAATCAGAATCA-ATATTAGTAACAGAAT
1 CAGAATCAGAATCAGAATCACAGAACAG-AACAGAAT
72867480 CA-AATCAGAATCAGAATCACAGAACAGAACAGAAT
1 CAGAATCAGAATCAGAATCACAGAACAGAACAGAAT
72867515 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
72867533 TAGGTGACAG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
35 27 0.56
36 21 0.44
ACGTcount: A:0.52, C:0.17, G:0.15, T:0.17
Consensus pattern (36 bp):
CAGAATCAGAATCAGAATCACAGAACAGAACAGAAT
Found at i:72867508 original size:5 final size:6
Alignment explanation
Indices: 72867427--72867557 Score: 114
Period size: 6 Copynumber: 21.8 Consensus size: 6
72867417 AACCAAAATG
* *
72867427 AGAATC AGAATT AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
72867475 AGAATC A-AATC AGAATC AGAATCAC AGAA-C AGAA-C AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
* *
72867522 AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAAT
72867558 GTGAATGCAA
Statistics
Matches: 104, Mismatches: 8, Indels: 26
0.75 0.06 0.19
Matches are distributed among these distances:
5 21 0.20
6 71 0.68
7 5 0.05
8 7 0.07
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:72867712 original size:27 final size:26
Alignment explanation
Indices: 72867675--72867733 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
72867665 AGCATGGCTG
72867675 CCAGAACAGATATCGTGACAGAGACA
1 CCAGAACAGATATCGTGACAGAGACA
* * *
72867701 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGACA
72867728 CCAGAA
1 CCAGAA
72867734 TCAGGTAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.39, C:0.24, G:0.24, T:0.14
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGACA
Found at i:72867745 original size:27 final size:27
Alignment explanation
Indices: 72867675--72867748 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
72867665 AGCATGGCTG
*
72867675 CCAGA-ACAGAT-ATCGTGACAGAGACA
1 CCAGATACAGATAAT-GTGGCAGAGACA
* *
72867701 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGATACAGATAATGTGGCAGAGACA
*
72867728 CCAGA-ATCAGGTAATGTGGCA
1 CCAGATA-CAGATAATGTGGCA
72867749 AACCCACCTA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 6 0.15
27 33 0.82
28 1 0.03
ACGTcount: A:0.36, C:0.22, G:0.26, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGACA
Found at i:72868138 original size:27 final size:26
Alignment explanation
Indices: 72868059--72868141 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
72868049 TCGATCTGTC
* * *
72868059 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
72868085 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
72868112 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
72868139 AAC
1 AAC
72868142 GCTTCTTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:72868370 original size:27 final size:27
Alignment explanation
Indices: 72868340--72868535 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
72868330 GGGGCAAAAT
* * *
72868340 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72868367 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72868394 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72868421 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72868448 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72868475 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72868502 GGAAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72868529 AGTAATT
1 GGTAATT
72868536 TCACAATCAA
Statistics
Matches: 143, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:72868576 original size:27 final size:27
Alignment explanation
Indices: 72868540--72868905 Score: 405
Period size: 27 Copynumber: 13.4 Consensus size: 27
72868530 GTAATTTCAC
*
72868540 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
72868567 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
72868594 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
72868621 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* ***
72868648 AA-CAGAGCGTAAAATAATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
72868675 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
72868702 AA-CTGAGGATAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
72868729 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
72868756 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
72868783 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*** *
72868810 AATCGAGGGTAAAATAATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
72868837 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
72868864 AATCTAATTCGGGTAAAACGGTAATTCTGTA
1 AATC-GA---GGGTAAAACGGTAATTCTGTA
72868895 AATCGAGGGTA
1 AATCGAGGGTA
72868906 CTTTGGTAAT
Statistics
Matches: 287, Mismatches: 43, Indels: 18
0.82 0.12 0.05
Matches are distributed among these distances:
26 3 0.01
27 254 0.89
28 5 0.02
30 1 0.00
31 24 0.08
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:72868644 original size:81 final size:81
Alignment explanation
Indices: 72868540--72868922 Score: 457
Period size: 81 Copynumber: 4.7 Consensus size: 81
72868530 GTAATTTCAC
*
72868540 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTA
72868605 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
** * ** * **
72868621 AATCGAGGGTAAAATAGTAATTCTGTAAA-CAGAGCGTAAAATAATAATTCTGTAAATCGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAATGGTAATTTTACAAATCGAGGGT
72868685 AAAACGGTAATTCTATA
65 AAAACGGTAATTCTATA
* * *
72868702 AA-CTGAGGATAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAAAAATTGAGGGT
1 AATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGT
*
72868766 AAAACGGTAATTCTGTA
65 AAAACGGTAATTCTATA
* * ** **
72868783 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAATAATTTTGTAAA-CTGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATC-GAGGGT
* *
72868847 AAAACAGTAATTCTGTA
65 AAAACGGTAATTCTATA
* ***
72868864 AATCTAATTCGGGTAAAACGGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAA
1 AATC-GA---GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAA
72868923 GTCGTTGGCA
Statistics
Matches: 254, Mismatches: 39, Indels: 14
0.83 0.13 0.05
Matches are distributed among these distances:
80 2 0.01
81 209 0.82
82 3 0.01
85 40 0.16
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:72871355 original size:30 final size:30
Alignment explanation
Indices: 72871279--72871347 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
72871269 CACACGGGTA
72871279 GACACACGGGCGTGTGTCTCAGTCGTGTGT
1 GACACACGGGCGTGTGTCTCAGTCGTGTGT
72871309 GACACACGGGCGTGTGTCTCAGTCGTGTGT
1 GACACACGGGCGTGTGTCTCAGTCGTGTGT
72871339 GACACACGG
1 GACACACGG
72871348 CCATGTGTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.16, C:0.25, G:0.36, T:0.23
Consensus pattern (30 bp):
GACACACGGGCGTGTGTCTCAGTCGTGTGT
Found at i:72871408 original size:25 final size:25
Alignment explanation
Indices: 72871350--72871408 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
72871340 ACACACGGCC
* *
72871350 ATGTGTACAGGCATATGGTTTGGCG
1 ATGTGTACGGGCATATAGTTTGGCG
* *
72871375 ATGTATACGGGCATGTAGTTTGGCCG
1 ATGTGTACGGGCATATAGTTTGG-CG
72871401 A-GTGTACG
1 ATGTGTACG
72871409 AGTGTGCGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 25 0.89
26 3 0.11
ACGTcount: A:0.20, C:0.14, G:0.36, T:0.31
Consensus pattern (25 bp):
ATGTGTACGGGCATATAGTTTGGCG
Found at i:72873735 original size:14 final size:15
Alignment explanation
Indices: 72873716--72873745 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72873706 GTTTATTATA
72873716 TGTGAA-GTATCATG
1 TGTGAATGTATCATG
72873730 TGTGAATGTATCATG
1 TGTGAATGTATCATG
72873745 T
1 T
72873746 CTTAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (15 bp):
TGTGAATGTATCATG
Found at i:72875667 original size:43 final size:43
Alignment explanation
Indices: 72875619--72875767 Score: 126
Period size: 43 Copynumber: 3.5 Consensus size: 43
72875609 GGCTTTGAGC
* *
72875619 CTAGCAGGCGTAATGCCGGTGAAATGATATTGGACTTAAAGGT
1 CTAGCAAGCTTAATGCCGGTGAAATGATATTGGACTTAAAGGT
* * *** *
72875662 CTAGCAAGCTTTAA-GCTGGTG-AAT-ATTATTGGGCTCCGA-GC
1 CTAGCAAGC-TTAATGCCGGTGAAATGA-TATTGGACTTAAAGGT
* * *
72875703 CTAGCAAGCATAATGTCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAAGCTTAATGCCGGTGAAATGATATTGGACTTAAAGGT
* * *
72875746 CTAGCAGGTTTATTGCCGGTGA
1 CTAGCAAGCTTAATGCCGGTGA
72875768 TGAAATCAGG
Statistics
Matches: 78, Mismatches: 22, Indels: 12
0.70 0.20 0.11
Matches are distributed among these distances:
40 3 0.04
41 16 0.21
42 23 0.29
43 33 0.42
44 3 0.04
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (43 bp):
CTAGCAAGCTTAATGCCGGTGAAATGATATTGGACTTAAAGGT
Found at i:72878160 original size:224 final size:224
Alignment explanation
Indices: 72877770--72878186 Score: 753
Period size: 224 Copynumber: 1.9 Consensus size: 224
72877760 ATTGAACTGA
*
72877770 TTGTAATATATTTGTGATATGACAAAATTGGAAAGGTATGAAAAGAAGTTTATGAAATGTGTGCA
1 TTGTAATATATTTGTGATATGACAAAATTGGAAAGGTATAAAAAGAAGTTTATGAAATGTGTGCA
72877835 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAAATCAAATTGGGTGGAA
66 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAAATCAAATTGGGTGGAA
* *
72877900 CACAGGGAATGAGTACGATCGTTCACTAATGAATTGATGGAAAAGAGCATGGTTGGACCATGGTC
131 CACAGGGAATGAGTACGATCGTTCACTAATGAATTGACGGAAAAGACCATGGTTGGACCATGGTC
72877965 TTTTCCGTCAATTCATTAGTATAAAGTAT
196 TTTTCCGTCAATTCATTAGTATAAAGTAT
** *
72877994 TTGTAATATATTTGTGATATGACGGAATTGGAAAGGTATAAAAAGAAGTTTATGATATGTGTGCA
1 TTGTAATATATTTGTGATATGACAAAATTGGAAAGGTATAAAAAGAAGTTTATGAAATGTGTGCA
*
72878059 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAGATCAAATTGGGTGGAA
66 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAAATCAAATTGGGTGGAA
* *
72878124 CGCATGGAATGAGTACGATCGTTCACTAATGAATTGACGGAAAAGACCATGGTTGGACCATGG
131 CACAGGGAATGAGTACGATCGTTCACTAATGAATTGACGGAAAAGACCATGGTTGGACCATGG
72878187 CAATACATGA
Statistics
Matches: 184, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
224 184 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (224 bp):
TTGTAATATATTTGTGATATGACAAAATTGGAAAGGTATAAAAAGAAGTTTATGAAATGTGTGCA
TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAAATCAAATTGGGTGGAA
CACAGGGAATGAGTACGATCGTTCACTAATGAATTGACGGAAAAGACCATGGTTGGACCATGGTC
TTTTCCGTCAATTCATTAGTATAAAGTAT
Found at i:72881967 original size:30 final size:29
Alignment explanation
Indices: 72881931--72881994 Score: 119
Period size: 30 Copynumber: 2.2 Consensus size: 29
72881921 TGATGATCAA
72881931 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
72881961 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
72881990 AGCTT
1 AGCTT
72881995 CAGCTACTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:72882946 original size:3 final size:3
Alignment explanation
Indices: 72882935--72882977 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
72882925 AATACAGATG
*
72882935 TTA TCA TTA TTA TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
72882978 TTGTATGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:72887243 original size:27 final size:27
Alignment explanation
Indices: 72887164--72887243 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 27
72887154 TTTACCGTTC
*
72887164 GTTTACAGAATTACCAGTATTA-CCTCA
1 GTTTACAGAATTA-CATTATTACCCTCA
* * * *
72887191 TTTTATAGAATTAC-TTTTTGCACCTCA
1 GTTTACAGAATTACATTATTAC-CCTCA
*
72887218 GTTTACAGAATTACATTAATACCCTC
1 GTTTACAGAATTACATTATTACCCTC
72887244 GATTTATAGA
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
25 3 0.08
26 1 0.03
27 32 0.80
28 4 0.10
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.39
Consensus pattern (27 bp):
GTTTACAGAATTACATTATTACCCTCA
Found at i:72887400 original size:26 final size:26
Alignment explanation
Indices: 72887337--72887423 Score: 102
Period size: 26 Copynumber: 3.2 Consensus size: 26
72887327 TTGATTGTGA
**
72887337 AATTACTGAAATACCCCTGTTAGGGTAG
1 AATTACTGAAATA-CCCTCATA-GGTAG
**
72887365 AATTTTTGAAATACCCTCATAGGTAG
1 AATTACTGAAATACCCTCATAGGTAG
*
72887391 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCTCATAGG-TAG
72887418 AATTAC
1 AATTAC
72887424 CAAATATCCC
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 25 0.49
27 15 0.29
28 11 0.22
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (26 bp):
AATTACTGAAATACCCTCATAGGTAG
Found at i:72887515 original size:27 final size:26
Alignment explanation
Indices: 72887345--72887515 Score: 91
Period size: 28 Copynumber: 6.3 Consensus size: 26
72887335 GAAATTACTG
* ***
72887345 AAATACCCCTGTTAGGGTAGAATTTTTG
1 AAATACCCCT-ATAGGGTAGAA-TTACC
*
72887373 AAATA-CCCTCATA-GGTAGAATTACTG
1 AAATACCCCT-ATAGGGTAGAATTAC-C
* *
72887399 AAATACCCTTATAGGATAGAATTACC
1 AAATACCCCTATAGGGTAGAATTACC
* *
72887425 AAATATCCCCCTGTAGGGTAGAA-TATCG
1 AAATA--CCCCTATAGGGTAGAATTA-CC
* * *
72887453 AAATACCACCTGTA-GGTAGAA-AATCT
1 AAATACC-CCTATAGGGTAGAATTA-CC
72887479 AATATAACCCCTATAGGGTAGAATTACC
1 AA-AT-ACCCCTATAGGGTAGAATTACC
72887507 AAGATACCC
1 AA-ATACCC
72887516 TTGTGGGTAA
Statistics
Matches: 115, Mismatches: 17, Indels: 23
0.74 0.11 0.15
Matches are distributed among these distances:
25 2 0.02
26 35 0.30
27 38 0.33
28 39 0.34
29 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.26
Consensus pattern (26 bp):
AAATACCCCTATAGGGTAGAATTACC
Found at i:72887779 original size:25 final size:27
Alignment explanation
Indices: 72887727--72887780 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
72887717 CGGAAGAAGC
72887727 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
72887754 GTTCTGGTGGCTCTG-C-CAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
72887779 GT
1 GT
72887781 ATTTGGTGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 11 0.42
26 1 0.04
27 14 0.54
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:72888353 original size:6 final size:6
Alignment explanation
Indices: 72888344--72888470 Score: 120
Period size: 6 Copynumber: 20.8 Consensus size: 6
72888334 CTGTCACCTA
*
72888344 ATTCTG ATTCTG ATTCTG ATTCTG -TACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
72888391 -TCACCTAA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG
1 AT--TCT-G ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG
72888441 ATTCTG ATTCTTG -TTACTG ATTCTG ATTCT
1 ATTCTG ATTC-TG ATT-CTG ATTCTG ATTCT
72888471 CATTTTGGTT
Statistics
Matches: 101, Mismatches: 8, Indels: 24
0.76 0.06 0.18
Matches are distributed among these distances:
5 8 0.08
6 81 0.80
7 10 0.10
8 1 0.01
9 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:72888377 original size:23 final size:25
Alignment explanation
Indices: 72888323--72888416 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 25
72888313 ATTCACATTT
*
72888323 TGATTCTGATTCTGTCACCTAATTC
1 TGATTCTGATTCTGTCACCTGATTC
72888348 TGATTCTGATTCTGATTCTGTA-CTGATTC
1 TGATTCTGATTCTG--TC---ACCTGATTC
*
72888377 TGATTCTGATTCTGTCACCTAAATTC
1 TGATTCTGATTCTGTCACCT-GATTC
72888403 TGATTCTGATTCTG
1 TGATTCTGATTCTG
72888417 ATTCTGTTAC
Statistics
Matches: 60, Mismatches: 2, Indels: 13
0.80 0.03 0.17
Matches are distributed among these distances:
24 1 0.02
25 16 0.27
26 18 0.30
27 4 0.07
29 20 0.33
30 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (25 bp):
TGATTCTGATTCTGTCACCTGATTC
Found at i:72888411 original size:32 final size:31
Alignment explanation
Indices: 72888344--72888470 Score: 131
Period size: 32 Copynumber: 4.2 Consensus size: 31
72888334 CTGTCACCTA
* *
72888344 ATTCTGATTCTGATTCTGAT-TCT-GTA-CTG
1 ATTCTGATTCTGATTCTG-TCACTAATATCTG
72888373 ATTCTGATTCTGATTCTGTCACCTAA-ATTCTG
1 ATTCTGATTCTGATTCTGTCA-CTAATA-TCTG
*
72888405 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTCACTAATATCTG
* *
72888435 ATTCTGATTCTGATTCTTGTTACTGAT-TCTG
1 ATTCTGATTCTGATTC-TGTCACTAATATCTG
72888466 ATTCT
1 ATTCT
72888471 CATTTTGGTT
Statistics
Matches: 86, Mismatches: 4, Indels: 14
0.83 0.04 0.13
Matches are distributed among these distances:
28 1 0.01
29 18 0.21
30 22 0.26
31 21 0.24
32 24 0.28
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACTAATATCTG
Found at i:72888419 original size:55 final size:55
Alignment explanation
Indices: 72888322--72888446 Score: 209
Period size: 55 Copynumber: 2.3 Consensus size: 55
72888312 CATTCACATT
*
72888322 TTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTG-TACTGAT-
1 TTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATA
72888375 TCTGATTCTGATTCTGTCACCTAAATTCTGATTCTGATTCTGATTCTGTTACTAATA
1 T-TGATTCTGATTCTGTCACCT-AATTCTGATTCTGATTCTGATTCTGTTACTAATA
72888432 TTGATTCTGATTCTG
1 TTGATTCTGATTCTG
72888447 ATTCTTGTTA
Statistics
Matches: 67, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
53 1 0.01
54 20 0.30
55 25 0.37
56 20 0.30
57 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.47
Consensus pattern (55 bp):
TTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATA
Found at i:72890485 original size:27 final size:27
Alignment explanation
Indices: 72890455--72890818 Score: 328
Period size: 27 Copynumber: 13.7 Consensus size: 27
72890445 ATTACCAAAG
*
72890455 TACCATCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
72890482 TACCCTCGATTTACA-AATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
72890508 TAACCGTC-AGTTTACAAAAATTACTATTT
1 T-ACCCTCGA-TTTAC-AGAATTACCGTTT
*
72890537 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
72890564 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
72890591 TACCCTC-AGTTATAGAATTATCG-TT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
72890616 TA-CCTCAATTT-TA-AATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
72890640 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
72890667 TAACCCTC-AGTTTACAGAATTACCGTTT
1 T-ACCCTCGA-TTTACAGAATTACCGTTT
* **
72890695 TACCCTCGATTTACAAAAAATTA-TTTTT
1 TACCCTCGATTTAC--AGAATTACCGTTT
*
72890723 TGCCCTC-AGTTTACAGAATTA-C-TATT
1 TACCCTCGA-TTTACAGAATTACCGT-TT
*
72890749 TACCC-CGATTATATAGAATTA-C-TTT
1 TACCCTCGATT-TACAGAATTACCGTTT
** *
72890774 TACCCTCGATTTGTAAAATTACCG-TT
1 TACCCTCGATTTACAGAATTACCGTTT
72890800 TACCCTCGATTTACAGAAT
1 TACCCTCGATTTACAGAAT
72890819 ACTATTTTAC
Statistics
Matches: 281, Mismatches: 34, Indels: 45
0.78 0.09 0.12
Matches are distributed among these distances:
23 6 0.02
24 10 0.04
25 34 0.12
26 73 0.26
27 90 0.32
28 50 0.18
29 18 0.06
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:72890540 original size:55 final size:54
Alignment explanation
Indices: 72890464--72890818 Score: 324
Period size: 55 Copynumber: 6.7 Consensus size: 54
72890454 GTACCATCGA
* * * *
72890464 TTTACAGAATTACCGTTTTACCCTCGATTTACA-AATTACTGTTTTAACCGTCAG
1 TTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTT-ACCCTCAG
* *
72890518 TTTACAAAAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-G
1 TTTAC-AAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
* * * * *
72890572 ATTTACAAAATTACCGTTTTACCCTC-AGTTATAGAATTATCG-TTTA-CCTCAA
1 -TTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
*
72890624 TTT--TAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTAACCCTCAG
1 TTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTT-ACCCTCAG
* * * ** *
72890677 TTTACAGAATTACCGTTTTACCCTCGATTTACAAAAAATTA-TTTTTTGCCCTCAG
1 TTTACAAAATTACCATTTTACCCTCGATTTAC--AGAATTACCGTTTTACCCTCAG
* * *
72890732 TTTACAGAATTACTA-TTTACCC-CGATTATATAGAATTA-C-TTTTACCCTC-G
1 TTTACAAAATTACCATTTTACCCTCGATT-TACAGAATTACCGTTTTACCCTCAG
** *
72890782 ATTTGTAAAATTACC-GTTTACCCTCGATTTACAGAAT
1 -TTTACAAAATTACCATTTTACCCTCGATTTACAGAAT
72890819 ACTATTTTAC
Statistics
Matches: 250, Mismatches: 35, Indels: 35
0.78 0.11 0.11
Matches are distributed among these distances:
49 18 0.07
50 14 0.06
51 43 0.17
52 16 0.06
53 27 0.11
54 33 0.13
55 78 0.31
56 15 0.06
57 6 0.02
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (54 bp):
TTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
Found at i:72890827 original size:159 final size:158
Alignment explanation
Indices: 72890471--72890827 Score: 408
Period size: 159 Copynumber: 2.2 Consensus size: 158
72890461 CGATTTACAG
* *
72890471 AATTACCGTTTTACCCTCGATTTACA-AATTACTGTTTTAACCGTCAGTTTACAAAAATTACTAT
1 AATTACCG-TTTACCCTCGATTTACAGAATTACTGTTTTAACCCTCAGTTTACAAAAATTACCAT
* *
72890535 TTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAG
65 TTTACCCTCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAG
72890600 TTATAGAATTATCGTTTACCTCAATTTTA
130 TTATAGAATTATCGTTTACCTCAATTTTA
* * * *
72890629 AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTAACCCTCAGTTTAC-AGAATTACCGT
1 AATTACC-GTTTACCCTCGATTTACAGAATTACTGTTTTAACCCTCAGTTTACAAAAATTACCAT
** * *
72890693 TTTACCCTCGATTTACAAAAAATTA-TTTTTTGCCCTC-AGTTTACAGAATTA-C-TATTTACCC
65 TTTACCCTCGATTT--AAAAAATTACCGTTTTACCCTCGA-TTTACAAAATTACCGT-TTTACCC
* * *
72890754 -CGATTATATAGAATTA-CTTTTACCCTCGATTTGTAA
126 TC-AGT-TATAGAATTATCGTTTA-CCTCAATTT-T-A
*
72890790 AATTACCGTTTACCCTCGATTTACAGAA-TACTATTTTA
1 AATTACCGTTTACCCTCGATTTACAGAATTACTGTTTTA
72890828 CCTTTGATTG
Statistics
Matches: 170, Mismatches: 18, Indels: 21
0.81 0.09 0.10
Matches are distributed among these distances:
157 2 0.01
158 62 0.36
159 70 0.41
160 28 0.16
161 8 0.05
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (158 bp):
AATTACCGTTTACCCTCGATTTACAGAATTACTGTTTTAACCCTCAGTTTACAAAAATTACCATT
TTACCCTCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAGT
TATAGAATTATCGTTTACCTCAATTTTA
Found at i:72890829 original size:131 final size:130
Alignment explanation
Indices: 72890518--72890818 Score: 353
Period size: 131 Copynumber: 2.3 Consensus size: 130
72890508 TAACCGTCAG
** *
72890518 TTTACAAAAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAAT
1 TTTAC-AAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAAT
* * *
72890583 TACCGTTTTACCCTCAGTTATAGAATTATCGTTTACCTCAATTTTAAATTACCATTTTACCCTCG
65 TACCGTTTTACCCTCAGTTACAGAATTATCATTTACCCCAATTTTAAATTACCATTTTACCCTCG
72890648 A
130 A
*
72890649 TTTACAGAATTACCGTTTTAACCCTC-AGTTTACAGAATTACCGTTTTACCCTCGATTTACAAAA
1 TTTACAAAATTACCGTTTT-ACCCTCGA-TTTACAGAATTACCGTTTTACCCTCGATTTAC--AA
** * *
72890713 AATTA-TTTTTTGCCCTCAGTTTACAGAATTA-CTATTTACCCCGATTATATAGAATTA-C-TTT
62 AATTACCGTTTTACCCTCAG-TTACAGAATTATC-ATTTACCCCAATT-T-TA-AATTACCATTT
72890774 TACCCTCGA
122 TACCCTCGA
**
72890783 TTTGTAAAATTACCG-TTTACCCTCGATTTACAGAAT
1 TTTACAAAATTACCGTTTTACCCTCGATTTACAGAAT
72890819 ACTATTTTAC
Statistics
Matches: 146, Mismatches: 14, Indels: 19
0.82 0.08 0.11
Matches are distributed among these distances:
130 12 0.08
131 42 0.29
132 28 0.19
133 31 0.21
134 25 0.17
135 3 0.02
136 5 0.03
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (130 bp):
TTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATT
ACCGTTTTACCCTCAGTTACAGAATTATCATTTACCCCAATTTTAAATTACCATTTTACCCTCGA
Found at i:72890892 original size:27 final size:27
Alignment explanation
Indices: 72890848--72890998 Score: 142
Period size: 24 Copynumber: 5.9 Consensus size: 27
72890838 TGAAATTACT
* * *
72890848 GAAATA-CCCTGTAGGGTAGAATTTTT
1 GAAATACCCCTATAGGGTAGAATTATC
72890874 GAAATACCCCTATAGGGTAGAATTACTC
1 GAAATACCCCTATAGGGTAGAATTA-TC
* *
72890902 GAAATACCCTTAT-GGATAGAA-TA-C
1 GAAATACCCCTATAGGGTAGAATTATC
* *
72890926 CAAATACCCCTGTA-GGTAGAATTATC
1 GAAATACCCCTATAGGGTAGAATTATC
* *
72890952 GAAATA-CCCT-GA-GGTCGAA--ATC
1 GAAATACCCCTATAGGGTAGAATTATC
72890974 GAAATACCCCTATAGGGTAGAATTA
1 GAAATACCCCTATAGGGTAGAATTA
72890999 CCAAGATACC
Statistics
Matches: 101, Mismatches: 14, Indels: 19
0.75 0.10 0.14
Matches are distributed among these distances:
22 9 0.09
23 4 0.04
24 25 0.25
25 12 0.12
26 14 0.14
27 24 0.24
28 13 0.13
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTATAGGGTAGAATTATC
Found at i:72890945 original size:24 final size:26
Alignment explanation
Indices: 72890849--72891028 Score: 115
Period size: 27 Copynumber: 7.0 Consensus size: 26
72890839 GAAATTACTG
* ***
72890849 AAATA-CCCTGTAGGGTAGAATTTTTG
1 AAATACCCCTATAGGGTAGAA-TTACC
72890875 AAATACCCCTATAGGGTAGAATTACTC
1 AAATACCCCTATAGGGTAGAATTAC-C
* *
72890902 GAAATACCCTTAT-GGATAGAA-TACC
1 -AAATACCCCTATAGGGTAGAATTACC
* *
72890927 AAATACCCCTGTA-GGTAGAATTATCG
1 AAATACCCCTATAGGGTAGAATTA-CC
* * * *
72890953 AAATA-CCCT-GA-GGTCGAAAT-CG
1 AAATACCCCTATAGGGTAGAATTACC
72890975 AAATACCCCTATAGGGTAGAATTACC
1 AAATACCCCTATAGGGTAGAATTACC
* * * *
72891001 AAGATACCCTTGTGGGGTAAAATTACC
1 AA-ATACCCCTATAGGGTAGAATTACC
72891028 A
1 A
72891029 TTTTGCCTCT
Statistics
Matches: 122, Mismatches: 21, Indels: 21
0.74 0.13 0.13
Matches are distributed among these distances:
22 7 0.06
23 4 0.03
24 25 0.20
25 14 0.11
26 19 0.16
27 42 0.34
28 11 0.09
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (26 bp):
AAATACCCCTATAGGGTAGAATTACC
Found at i:72891263 original size:27 final size:26
Alignment explanation
Indices: 72891225--72891307 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
72891215 CGGAAGAAGC
72891225 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
72891252 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * ** *
72891278 GTATTTGGTGACTCCGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
72891305 GTT
1 GTT
72891308 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:72891883 original size:17 final size:17
Alignment explanation
Indices: 72891808--72891947 Score: 90
Period size: 18 Copynumber: 8.6 Consensus size: 17
72891798 TCACATTTTG
72891808 ATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGT-A-CTA
* *
72891827 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTG-TACTA
* *
72891845 ATTCTG-TTCTGTTCTG
1 ATTCTGATTCTGTACTA
72891861 ATTCTGATTC-GTCACTA
1 ATTCTGATTCTGT-ACTA
72891878 ATTCTGATTCTG-----
1 ATTCTGATTCTGTACTA
72891890 ATTCTTGATTCTGTACTA
1 ATTC-TGATTCTGTACTA
72891908 ATT-TGATTCTG-----
1 ATTCTGATTCTGTACTA
*
72891919 ATTCTGATTCTGTTACTG
1 ATTCTGATTCTG-TACTA
72891937 ATTCTGATTCT
1 ATTCTGATTCT
72891948 CATTTTGGTT
Statistics
Matches: 100, Mismatches: 4, Indels: 35
0.72 0.03 0.25
Matches are distributed among these distances:
11 3 0.03
12 12 0.12
13 8 0.08
16 21 0.21
17 20 0.20
18 23 0.23
19 12 0.12
20 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (17 bp):
ATTCTGATTCTGTACTA
Found at i:72891900 original size:7 final size:6
Alignment explanation
Indices: 72891827--72891947 Score: 130
Period size: 6 Copynumber: 20.8 Consensus size: 6
72891817 CTGTCACCTA
72891827 ATTCTG ATTCTG ATTCTG ATTCTG -TTCTG -TTCTG ATTCTG ATTC-G
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
72891872 -TCACTA ATTCTG ATTCTG ATTCTTG ATTCTG -TACTA ATT-TG ATTCTG
1 AT-TCTG ATTCTG ATTCTG ATTC-TG ATTCTG ATTCTG ATTCTG ATTCTG
72891919 ATTCTG ATTCTG -TTACTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCT
72891948 CATTTTGGTT
Statistics
Matches: 98, Mismatches: 8, Indels: 18
0.79 0.06 0.15
Matches are distributed among these distances:
4 1 0.01
5 21 0.21
6 67 0.68
7 9 0.09
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:72891915 original size:52 final size:52
Alignment explanation
Indices: 72891804--72891924 Score: 183
Period size: 52 Copynumber: 2.3 Consensus size: 52
72891794 GCATTCACAT
* *
72891804 TTTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTCTG
1 TTTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTACTA
72891856 TTCTGATTCTGATTC-GTCA-CTAATTCTGATTCTGATTCTTGATTCTGTACTAA
1 TT-TGATTCTGATTCTGTCACCTAATTCTGATTCTGATTC-TGATTCTGTACT-A
72891909 TTTGATTCTGATTCTG
1 TTTGATTCTGATTCTG
72891925 ATTCTGTTAC
Statistics
Matches: 63, Mismatches: 2, Indels: 7
0.88 0.03 0.10
Matches are distributed among these distances:
51 19 0.30
52 29 0.46
53 15 0.24
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.50
Consensus pattern (52 bp):
TTTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTACTA
Found at i:72905342 original size:25 final size:25
Alignment explanation
Indices: 72905306--72905357 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
72905296 TGAGTAAGTT
72905306 AACATAGCTTAGTAAGTTTAAAACA
1 AACATAGCTTAGTAAGTTTAAAACA
*
72905331 AACATAGTTTAGTAAGTTTAAAACA
1 AACATAGCTTAGTAAGTTTAAAACA
72905356 AA
1 AA
72905358 TAGACAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.29
Consensus pattern (25 bp):
AACATAGCTTAGTAAGTTTAAAACA
Found at i:72906273 original size:55 final size:54
Alignment explanation
Indices: 72906205--72906330 Score: 225
Period size: 55 Copynumber: 2.3 Consensus size: 54
72906195 GTAACAGAAT
*
72906205 CAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAA-ATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
72906260 CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCA-AATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
72906315 CAGAATCAGAATCAAA
1 CAGAATCAGAATCAAA
72906331 ATGTGAATGC
Statistics
Matches: 69, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
54 2 0.03
55 66 0.96
56 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (54 bp):
CAGAATCAGAATCAAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
Found at i:72906327 original size:6 final size:6
Alignment explanation
Indices: 72906182--72906307 Score: 136
Period size: 6 Copynumber: 20.8 Consensus size: 6
72906172 AACCAAAATG
*
72906182 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
* *
72906230 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
72906279 AGTAA-C AGAATC AGAATC AGAATC AGAAT
1 AG-AATC AGAATC AGAATC AGAATC AGAAT
72906308 TAGGTGACAG
Statistics
Matches: 103, Mismatches: 6, Indels: 22
0.79 0.05 0.17
Matches are distributed among these distances:
5 8 0.08
6 86 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:72906913 original size:27 final size:26
Alignment explanation
Indices: 72906834--72906916 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
72906824 TCGATCGGTC
* * * *
72906834 AACAGATATTGTGACGGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
72906860 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
72906887 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
72906914 AAC
1 AAC
72906917 GCTTCTTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:72907252 original size:81 final size:81
Alignment explanation
Indices: 72907117--72907302 Score: 282
Period size: 81 Copynumber: 2.3 Consensus size: 81
72907107 GGCAAAATGG
* * * * * *
72907117 TAATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTATAGGGGTATTTCAGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCC
*
72907182 TACAGGGGTATTTCGA
66 TACAGGGGTATTTCAA
*
72907198 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCC
*
72907263 TATAGGGGTATTTCAA
66 TACAGGGGTATTTCAA
*
72907279 AAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
72907303 CAGTAATTTC
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 95 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCC
TACAGGGGTATTTCAA
Found at i:72907303 original size:27 final size:27
Alignment explanation
Indices: 72907116--72907310 Score: 232
Period size: 27 Copynumber: 7.2 Consensus size: 27
72907106 AGGCAAAATG
* * * *
72907116 GTAATTTTACCCCACAAGGGTATCTT-G
1 GTAATTCTACCCTACAGGGGTAT-TTCA
*
72907143 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
72907170 GTATTTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
**
72907196 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
72907224 GTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
72907251 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
**
72907278 AAAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
72907305 GTAATT
1 GTAATT
72907311 TCACAATCAA
Statistics
Matches: 144, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.02
27 140 0.97
28 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:72907352 original size:27 final size:27
Alignment explanation
Indices: 72907322--72907702 Score: 439
Period size: 27 Copynumber: 14.1 Consensus size: 27
72907312 CACAATCAAA
**
72907322 GGTAAAATAGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* **
72907349 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** *
72907376 GGTAAAATAGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
**
72907403 GGTAAAATAGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
* * *
72907430 GGCAAAACAGTAATTTTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
72907457 GGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
72907484 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* * ** *
72907511 GGTAAAATGGTAATTTTAAAAATTGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
72907538 GGTAAAACGATAATTCTATAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
72907565 GGTAAAACGGTAATTTTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
72907592 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** * *
72907619 GGTAAAATAGTAATTTTGTAAA-CTGAC
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
72907646 GGTAAAACAGTAATT-TGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
72907672 GGTAAAACGGTAATTCTGTAAATCGAT
1 GGTAAAACGGTAATTCTGTAAATCGAG
72907699 GGTA
1 GGTA
72907703 CTTTGGTAAT
Statistics
Matches: 305, Mismatches: 40, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
26 25 0.08
27 277 0.91
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GGTAAAACGGTAATTCTGTAAATCGAG
Found at i:72907419 original size:81 final size:81
Alignment explanation
Indices: 72907322--72907702 Score: 500
Period size: 81 Copynumber: 4.7 Consensus size: 81
72907312 CACAATCAAA
* *
72907322 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAATAGT
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATAGT
72907387 AATTCTATAAA-TCGAG
66 AATTCTATAAACT-GAG
* * * * **
72907403 GGTAAAATAGTAATTCTGTAAA-CTGAGGGCAAAACAGTAATTTTGTAAATCGAGGGTAAAACGG
1 GGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATAG
*
72907467 TAATTCTGTAAACTGAG
65 TAATTCTATAAACTGAG
* * * * *
72907484 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAAAAATTGAGGGTAAAA-CGA
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATAG-
72907548 TAATTCTATAAACTGAG
65 TAATTCTATAAACTGAG
* * *
72907565 GGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGT
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATAGT
* * *
72907630 AATTTTGTAAACTGAC
66 AATTCTATAAACTGAG
* * *
72907646 GGTAAAACAGTAATT-TGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGATGGTA
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTA
72907703 CTTTGGTAAT
Statistics
Matches: 266, Mismatches: 29, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
80 42 0.16
81 221 0.83
82 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATAGT
AATTCTATAAACTGAG
Found at i:72909800 original size:55 final size:54
Alignment explanation
Indices: 72909732--72909858 Score: 227
Period size: 55 Copynumber: 2.3 Consensus size: 54
72909722 GTAACAGAAT
*
72909732 CAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAA-ATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
72909787 CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCA-AATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
72909842 CAGAATCAGAATCAAAT
1 CAGAATCAGAATCAAAT
72909859 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
54 3 0.04
55 66 0.94
56 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (54 bp):
CAGAATCAGAATCAAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
Found at i:72909854 original size:6 final size:6
Alignment explanation
Indices: 72909709--72909834 Score: 136
Period size: 6 Copynumber: 20.8 Consensus size: 6
72909699 AACCAAAATG
*
72909709 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
* *
72909757 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
72909806 AGTAA-C AGAATC AGAATC AGAATC AGAAT
1 AG-AATC AGAATC AGAATC AGAATC AGAAT
72909835 TAGGTGACAG
Statistics
Matches: 103, Mismatches: 6, Indels: 22
0.79 0.05 0.17
Matches are distributed among these distances:
5 8 0.08
6 86 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:72910434 original size:27 final size:26
Alignment explanation
Indices: 72910355--72910437 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
72910345 TCGATCGGTC
* * *
72910355 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
72910381 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
72910408 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
72910435 AAC
1 AAC
72910438 GCTTCTCCGT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:72910772 original size:81 final size:81
Alignment explanation
Indices: 72910637--72910822 Score: 282
Period size: 81 Copynumber: 2.3 Consensus size: 81
72910627 GGCAAAATGG
* * * * * *
72910637 TAATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTATAGGGGTATTTCAGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCC
*
72910702 TACAGGGGTATTTCGA
66 TACAGGGGTATTTCAA
*
72910718 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCC
*
72910783 TATAGGGGTATTTCAA
66 TACAGGGGTATTTCAA
*
72910799 AAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
72910823 CAGTAATTTC
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 95 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCC
TACAGGGGTATTTCAA
Found at i:72910823 original size:27 final size:27
Alignment explanation
Indices: 72910636--72910830 Score: 232
Period size: 27 Copynumber: 7.2 Consensus size: 27
72910626 AGGCAAAATG
* * * *
72910636 GTAATTTTACCCCACAAGGGTATCTT-G
1 GTAATTCTACCCTACAGGGGTAT-TTCA
*
72910663 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
72910690 GTATTTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
**
72910716 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
72910744 GTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
72910771 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
**
72910798 AAAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
72910825 GTAATT
1 GTAATT
72910831 TCACAATCAA
Statistics
Matches: 144, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.02
27 140 0.97
28 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:72910872 original size:27 final size:27
Alignment explanation
Indices: 72910842--72911219 Score: 405
Period size: 27 Copynumber: 14.1 Consensus size: 27
72910832 CACAATCAAA
*
72910842 GGTAAAATAGTAATTCTGTAAATCGAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
* * **
72910869 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
* *
72910896 GGT-AAATAGTAATTCTATAAATCGAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
*
72910922 GGTAAAATAGTAATTCTGTAAA-CTGAG
1 GGTAAAACAGTAATTCTGTAAATC-GAG
* *
72910949 GGCAAAACAGTAATTCTATAAATCGAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
*
72910976 GGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACAGTAATTCTGTAAATC-GAG
*
72911003 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
** * ** *
72911030 GGTAAAATGGTAATTTTAAAAATTGAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
*
72911057 GGT-AAAC-GATAATTCTATAAA-CTGAG
1 GGTAAAACAG-TAATTCTGTAAATC-GAG
*
72911083 GGTAAAACGGTAATT-TGTAAATCGAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
* *
72911109 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
* * *
72911136 GGTAAAATAGTAATTTTGTAAA-CTGAC
1 GGTAAAACAGTAATTCTGTAAATC-GAG
72911163 GGTAAAACAGTAATT-TGTAAATCGAG
1 GGTAAAACAGTAATTCTGTAAATCGAG
* *
72911189 GGTAAAACGGTAATTCTGTAAATCGAT
1 GGTAAAACAGTAATTCTGTAAATCGAG
72911216 GGTA
1 GGTA
72911220 CTTTGGTAAT
Statistics
Matches: 301, Mismatches: 36, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
25 1 0.00
26 89 0.30
27 208 0.69
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GGTAAAACAGTAATTCTGTAAATCGAG
Found at i:72911231 original size:53 final size:54
Alignment explanation
Indices: 72910842--72911219 Score: 432
Period size: 53 Copynumber: 7.1 Consensus size: 54
72910832 CACAATCAAA
** * * **
72910842 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAG
1 GGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAG
**
72910896 GGTAAATA--GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAG
1 GGTAAA-ACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAG
* *
72910949 GGCAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAG
* * * ** *
72911003 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAAAAATTGAG
1 GGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAG
*
72911057 GGT-AAACGATAATTCTATAAA-CTGAGGGTAAAACGGTAATT-TGTAAATCGAG
1 GGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAG
** * *
72911109 GGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAA-CTGAC
1 GGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAG
* * *
72911163 GGTAAAACAGTAATT-TGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAT
1 GGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAG
72911216 GGTA
1 GGTA
72911220 CTTTGGTAAT
Statistics
Matches: 280, Mismatches: 33, Indels: 23
0.83 0.10 0.07
Matches are distributed among these distances:
52 14 0.05
53 144 0.51
54 121 0.43
55 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAG
Found at i:72911232 original size:80 final size:80
Alignment explanation
Indices: 72910842--72911219 Score: 485
Period size: 80 Copynumber: 4.7 Consensus size: 80
72910832 CACAATCAAA
* * * *
72910842 GGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAATAGTA
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAATGGTA
72910907 ATTCTATAAA-TCGAG
66 ATTCTATAAACT-GAG
* * * *
72910922 GGTAAAATAGTAATTCTGTAAA-CTGAGGGCAAAACAGTAATTCTATAAATCGAGGGTAAAACGG
1 GGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGT-AAATGG
*
72910986 TAATTCTGTAAACTGAG
64 TAATTCTATAAACTGAG
* * * * * * *
72911003 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAAAAATTGAGGGTAAACGATA
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAATGGTA
72911068 ATTCTATAAACTGAG
66 ATTCTATAAACTGAG
* *
72911083 GGTAAAACGGTAATT-TGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGT
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGT-AAATGGT
* * *
72911147 AATTTTGTAAACTGAC
65 AATTCTATAAACTGAG
* *
72911163 GGTAAAACAGTAATT-TGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGATGGTA
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
72911220 CTTTGGTAAT
Statistics
Matches: 263, Mismatches: 30, Indels: 11
0.87 0.10 0.04
Matches are distributed among these distances:
79 39 0.15
80 157 0.60
81 65 0.25
82 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (80 bp):
GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAATGGTA
ATTCTATAAACTGAG
Found at i:72913248 original size:24 final size:24
Alignment explanation
Indices: 72913221--72913367 Score: 155
Period size: 24 Copynumber: 6.3 Consensus size: 24
72913211 AACCAAAATG
72913221 AGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGTAACAGAATC
* **
72913245 AGAATCAGAATCAATATTAGTAA-C
1 AGAATCAGAATCAGTAACAG-AATC
72913269 AGAATCAGAATCAG-AATCAGAATC
1 AGAATCAGAATCAGTAA-CAGAATC
* *
72913293 AGAATTAG-----GTGACAGAATC
1 AGAATCAGAATCAGTAACAGAATC
72913312 AGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGTAACAGAATC
* *
72913336 AGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCA-GTAACAGAATC
72913361 AGAATCA
1 AGAATCA
72913368 AATGTGAATG
Statistics
Matches: 101, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
19 15 0.15
20 1 0.01
23 3 0.03
24 63 0.62
25 19 0.19
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (24 bp):
AGAATCAGAATCAGTAACAGAATC
Found at i:72913310 original size:25 final size:25
Alignment explanation
Indices: 72913280--72913367 Score: 151
Period size: 25 Copynumber: 3.6 Consensus size: 25
72913270 GAATCAGAAT
72913280 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
* *
72913305 CAGAATCAGAATCAGAATCA-GTAA
1 CAGAATCAGAATCAGAATTAGGTGA
72913329 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
72913354 CAGAATCAGAATCA
1 CAGAATCAGAATCA
72913368 AATGTGAATG
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
24 22 0.38
25 36 0.62
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTGA
Found at i:72913333 original size:43 final size:44
Alignment explanation
Indices: 72913221--72913367 Score: 153
Period size: 49 Copynumber: 3.3 Consensus size: 44
72913211 AACCAAAATG
* * *
72913221 AGAATCAGAATCAGTAA-CAG-AATCAGAATCAGAATCA-AT-ATT
1 AGAATCAGAATCAG-AATCAGAAATCAGAATCAGAATTAGGTGA-C
72913263 AGTAA-CAGAATCAGAATCAG-AATCAGAATCAGAATTAGGTGAC
1 AG-AATCAGAATCAGAATCAGAAATCAGAATCAGAATTAGGTGAC
72913306 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAG----A-AATCAGAATCAGAATTAGGTGAC
72913355 AGAATCAGAATCA
1 AGAATCAGAATCA
72913368 AATGTGAATG
Statistics
Matches: 91, Mismatches: 3, Indels: 15
0.83 0.03 0.14
Matches are distributed among these distances:
41 2 0.02
42 32 0.35
43 20 0.22
44 1 0.01
49 36 0.40
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (44 bp):
AGAATCAGAATCAGAATCAGAAATCAGAATCAGAATTAGGTGAC
Found at i:72913339 original size:49 final size:49
Alignment explanation
Indices: 72913268--72913367 Score: 184
Period size: 49 Copynumber: 2.0 Consensus size: 49
72913258 ATATTAGTAA
72913268 CAGAATCAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAAT
72913317 CAGAATCAGTAA-CAGAATCAGAATCAGAATTAGGTGACAGAATCAGAAT
1 CAGAATCAG-AATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAAT
72913366 CA
1 CA
72913368 AATGTGAATG
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
49 48 0.96
50 2 0.04
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (49 bp):
CAGAATCAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAAT
Found at i:72913366 original size:6 final size:6
Alignment explanation
Indices: 72913221--72913346 Score: 136
Period size: 6 Copynumber: 20.8 Consensus size: 6
72913211 AACCAAAATG
*
72913221 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
* *
72913269 AGAATC AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
72913318 AGAATC AGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AG-AATC AGAATC AGAATC AGAAT
72913347 TAGGTGACAG
Statistics
Matches: 103, Mismatches: 6, Indels: 22
0.79 0.05 0.17
Matches are distributed among these distances:
5 8 0.08
6 86 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:72913769 original size:22 final size:22
Alignment explanation
Indices: 72913721--72913779 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
72913711 GTAAATACGT
*
72913721 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
72913743 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
72913765 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
72913780 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:72913946 original size:27 final size:26
Alignment explanation
Indices: 72913867--72913949 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
72913857 TCGATCGGTC
* * *
72913867 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
72913893 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
72913920 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
72913947 AAC
1 AAC
72913950 GCTTCTCCGT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:72914192 original size:26 final size:26
Alignment explanation
Indices: 72914144--72914327 Score: 183
Period size: 26 Copynumber: 7.0 Consensus size: 26
72914134 TAGGGCAAAA
* * * *
72914144 TGGTAATTTTACCCCACAAGGGTATC
1 TGGTAATTCTACCCTACAGGGGTATT
*
72914170 TGGTAATTCTACCCTATAGGGGTATT
1 TGGTAATTCTACCCTACAGGGGTATT
* *
72914196 TCGTATTTCTACCCTACA-GGGTATT
1 TGGTAATTCTACCCTACAGGGGTATT
*
72914221 TCGATAATTCTACCCTACAGGGGTATTT
1 T-GGTAATTCTACCCTACAGGGGTA-TT
* * *
72914249 TGGTAATTCTATCCTATAAGGGTATT
1 TGGTAATTCTACCCTACAGGGGTATT
* *
72914275 TCAGTAATTCTACCCTATA-GGGTATT
1 T-GGTAATTCTACCCTACAGGGGTATT
***
72914301 TCAAAATTCTACCCTACAGGGGTATT
1 TGGTAATTCTACCCTACAGGGGTATT
72914327 T
1 T
72914328 CAGTAATTTC
Statistics
Matches: 132, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
25 21 0.16
26 69 0.52
27 39 0.30
28 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (26 bp):
TGGTAATTCTACCCTACAGGGGTATT
Found at i:72914209 original size:52 final size:53
Alignment explanation
Indices: 72914146--72914335 Score: 224
Period size: 52 Copynumber: 3.6 Consensus size: 53
72914136 GGGCAAAATG
* * *
72914146 GTAATTTTACCCCACAAGGGTATCT-GGTAATTCTACCCTATAGGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
* * * *
72914198 GTATTTCTACCCTAC-AGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTA-TTTC
* * *
72914251 GTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATA-GGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
** * *
72914303 AAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATT
72914336 TCACAATCAA
Statistics
Matches: 116, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
51 8 0.07
52 64 0.55
53 20 0.17
54 24 0.21
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.37
Consensus pattern (53 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
Found at i:72914265 original size:79 final size:79
Alignment explanation
Indices: 72914147--72914327 Score: 258
Period size: 79 Copynumber: 2.3 Consensus size: 79
72914137 GGCAAAATGG
* * * * * *
72914147 TAATTTTACCCCACAAGGGTA-TCTGGTAATTCTACCCTATAGGGGTATTTC-GTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCC
72914210 TACAGGGTATTTCGA
66 TACAGGGTATTTC-A
*
72914225 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCC
*
72914290 TATAGGGTATTTCA
66 TACAGGGTATTTCA
*
72914304 AAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
72914328 CAGTAATTTC
Statistics
Matches: 92, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
78 18 0.20
79 51 0.55
80 23 0.25
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (79 bp):
TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCC
TACAGGGTATTTCA
Found at i:72914328 original size:26 final size:26
Alignment explanation
Indices: 72914173--72914335 Score: 186
Period size: 26 Copynumber: 6.2 Consensus size: 26
72914163 GGGTATCTGG
* *
72914173 TAATTCTACCCTATAGGGGTATTTCG
1 TAATTCTACCCTACAGGGGTATTTCA
*
72914199 TATTTCTACCCTACA-GGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTC-A
**
72914225 TAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTA-TTTCA
* * *
72914252 TAATTCTATCCTATAAGGGTATTTCA
1 TAATTCTACCCTACAGGGGTATTTCA
*
72914278 GTAATTCTACCCTATA-GGGTATTTCA
1 -TAATTCTACCCTACAGGGGTATTTCA
*
72914304 AAATTCTACCCTACAGGGGTATTTCA
1 TAATTCTACCCTACAGGGGTATTTCA
72914330 GTAATT
1 -TAATT
72914336 TCACAATCAA
Statistics
Matches: 116, Mismatches: 15, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
25 22 0.19
26 50 0.43
27 41 0.35
28 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (26 bp):
TAATTCTACCCTACAGGGGTATTTCA
Found at i:72914436 original size:27 final size:27
Alignment explanation
Indices: 72914346--72914746 Score: 461
Period size: 27 Copynumber: 15.1 Consensus size: 27
72914336 TCACAATCAA
*
72914346 GGTAAAA-AGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
**
72914372 GGTAAAAC-GT--TT-TACAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
72914395 GGTAAATA--GTAATTCTATAAATCGAG
1 GGTAAA-ACGGTAATTCTGTAAATCGAG
**
72914421 GGTAAAATAGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
* *
72914448 GGCAAAACAGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
72914475 GGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
72914502 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* * **
72914529 GGTAAAATGGTAATTTTAAAAAT-GAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
72914555 GGTAAAACGATAATTCTATAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
72914582 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
72914609 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** * *
72914636 GGTAAAATAGTAATTTTGTAAA-CTGAC
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
72914663 GGTAAAACAGTAATT-TGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
72914689 GGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
72914716 GGTAAAACGGTAATTCTGTAAATCGAT
1 GGTAAAACGGTAATTCTGTAAATCGAG
72914743 GGTA
1 GGTA
72914747 CTTTGGTAAT
Statistics
Matches: 328, Mismatches: 28, Indels: 37
0.83 0.07 0.09
Matches are distributed among these distances:
23 17 0.05
24 3 0.01
25 3 0.01
26 72 0.22
27 229 0.70
28 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
GGTAAAACGGTAATTCTGTAAATCGAG
Found at i:72914595 original size:134 final size:132
Alignment explanation
Indices: 72914346--72914746 Score: 514
Period size: 134 Copynumber: 3.0 Consensus size: 132
72914336 TCACAATCAA
* **
72914346 GGTAAAA-AGTAATTCTGTAAATCGAGGGTAAAACGT--TTTACAAATCGAGGGT-AAATAGTAA
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGTAATTTGTAAATCGAGGGTAAAATAGTAA
* * * *
72914407 TTCTATAAATCGAGGGTAAAA-TAGTAATTCTGTAAACTGAGGGCAAAACAGTAATTCTGTAAAT
66 TTTTA-AAATCGAGGGTAAAACGA-TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAAT
72914471 CGAG
129 CGAG
*
72914475 GGTAAAACGGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGG
1 GGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAAC-GTAATT-TGTAAATCGAGGGTAAAATAG
*
72914539 TAATTTTAAAAAT-GAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAA
63 TAATTTT-AAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAA
72914603 ATCGAG
127 ATCGAG
* * * *
72914609 GGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAA-CTGACGGTAAAACAG
1 GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-CGTAA-TTTGTAAATC-GAGGGTAAAATAG
*
72914673 TAATTTGT-AAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAA
63 TAATTT-TAAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAA
*
72914737 ATCGAT
127 ATCGAG
72914743 GGTA
1 GGTA
72914747 CTTTGGTAAT
Statistics
Matches: 240, Mismatches: 17, Indels: 25
0.85 0.06 0.09
Matches are distributed among these distances:
129 8 0.03
130 24 0.10
131 2 0.01
133 7 0.03
134 178 0.74
135 20 0.08
136 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.27
Consensus pattern (132 bp):
GGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGTAATTTGTAAATCGAGGGTAAAATAGTAA
TTTTAAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCG
AG
Found at i:72914784 original size:107 final size:106
Alignment explanation
Indices: 72914346--72914760 Score: 521
Period size: 107 Copynumber: 3.9 Consensus size: 106
72914336 TCACAATCAA
**
72914346 GGTAAAA-AGTAATTCTGTAAATCGAGGGTAAAAC-GT--TT-TACAAA-TCGAGGGTAAATA--
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACT-GAGGGTAAA-ACG
* * *
72914403 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAG
64 GTAATTCTGTAAATCGAGGGTAAAATGGTAATT-T-TAAAATGAG
*
72914448 GGCAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGT
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGT
72914513 AATTCTGTAAATCGAGGGTAAAATGGTAATTTTAAAAATGAG
66 AATTCTGTAAATCGAGGGTAAAATGGTAATTTT-AAAATGAG
*
72914555 GGTAAAAC-GATAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGTAAA-TCGAGGGTAAAAC
1 GGTAAAACAG-TAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAACT-GAGGGTAAAAC
* * * *
72914617 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAACTGAC
63 GGTAATTCTGTAAATCGAGGGTAAAATGGTAA-TTT-TAAAATGAG
72914663 GGTAAAACAGTAATT-TGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGT
1 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGT
* ***
72914727 AATTCTGTAAATCGATGGTACTTTGGTAATTTTA
66 AATTCTGTAAATCGAGGGTAAAATGGTAATTTTA
72914761 CAAGTCGAGG
Statistics
Matches: 277, Mismatches: 19, Indels: 31
0.85 0.06 0.09
Matches are distributed among these distances:
102 6 0.02
103 27 0.10
104 2 0.01
105 2 0.01
106 10 0.04
107 172 0.62
108 56 0.20
109 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (106 bp):
GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGT
AATTCTGTAAATCGAGGGTAAAATGGTAATTTTAAAATGAG
Found at i:72916758 original size:6 final size:6
Alignment explanation
Indices: 72916747--72916872 Score: 136
Period size: 6 Copynumber: 20.8 Consensus size: 6
72916737 AACCAAAATG
*
72916747 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
72916795 AGAATC AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* *
72916843 AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AGAATC AGAAT--C AGAATC AGAATC AGAAT
72916873 GTGAATGCAA
Statistics
Matches: 103, Mismatches: 6, Indels: 22
0.79 0.05 0.17
Matches are distributed among these distances:
5 8 0.08
6 86 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:72916781 original size:30 final size:30
Alignment explanation
Indices: 72916747--72916872 Score: 200
Period size: 30 Copynumber: 4.2 Consensus size: 30
72916737 AACCAAAATG
72916747 AGAATCAGAATCAGTAACAGAATCAGAATC
1 AGAATCAGAATCAGTAACAGAATCAGAATC
*
72916777 AGAATCA-ATATTAGTAACAGAATCAGAATC
1 AGAATCAGA-ATCAGTAACAGAATCAGAATC
72916807 AGAATCAGAATCAGTAACAGAATCAGAATC
1 AGAATCAGAATCAGTAACAGAATCAGAATC
* *
72916837 AGAATCAGAATTAGGTGACAGAATCAGAATC
1 AGAATCAGAATCA-GTAACAGAATCAGAATC
72916868 AGAAT
1 AGAAT
72916873 GTGAATGCAA
Statistics
Matches: 89, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
29 1 0.01
30 66 0.74
31 22 0.25
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (30 bp):
AGAATCAGAATCAGTAACAGAATCAGAATC
Found at i:72917452 original size:27 final size:26
Alignment explanation
Indices: 72917374--72917455 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
72917364 TCGATCGGTC
* * *
72917374 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
72917400 ATACAGATATTGT-GCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
72917426 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
72917453 AAC
1 AAC
72917456 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
25 7 0.14
26 16 0.33
27 26 0.53
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:72917710 original size:27 final size:27
Alignment explanation
Indices: 72917654--72917847 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
72917644 GGGGCAAAAT
* *
72917654 GGTAATTTTACCC-ACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72917680 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72917707 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72917734 GATAATTCTACCCTAC-AGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72917760 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72917787 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72917814 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72917841 AGTAATT
1 GGTAATT
72917848 TCACAATCAA
Statistics
Matches: 146, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 34 0.23
27 112 0.77
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:72917796 original size:80 final size:81
Alignment explanation
Indices: 72917656--72917847 Score: 237
Period size: 80 Copynumber: 2.4 Consensus size: 81
72917646 GGCAAAATGG
* * * ** *
72917656 TAATTTTACCC-ACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCC
1 TAATTCTACCCTAC-AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
72917720 TACAAGGGTATTTC-GA
65 TACAAGGGTATTTCAGA
* * *
72917736 TAATTCTACCCTACAGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCT
1 TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
* *
72917801 ATAGGGGTATTTCAGA
66 ACAAGGGTATTTCAGA
*
72917817 -AATTCTACCCTACAGGGGTATTTCAGTAATT
1 TAATTCTACCCTACA-GGGTATTTCGGTAATT
72917848 TCACAATCAA
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
80 78 0.81
81 18 0.19
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCAGA
Found at i:72917841 original size:54 final size:54
Alignment explanation
Indices: 72917653--72917847 Score: 261
Period size: 54 Copynumber: 3.6 Consensus size: 54
72917643 AGGGGCAAAA
* * *
72917653 TGGTAATTTTACCC-ACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
*
72917706 TGGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACA-GGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTT
* * *
72917759 TGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
** * *
72917813 CAGAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 TGGTAATTCTACCCTACAAGGGTATTTCAGTAATT
72917848 TCACAATCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
53 60 0.48
54 65 0.52
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
Found at i:72917892 original size:27 final size:27
Alignment explanation
Indices: 72917858--72918254 Score: 514
Period size: 27 Copynumber: 15.0 Consensus size: 27
72917848 TCACAATCAA
*
72917858 GGTAAAACAGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
72917885 GGTAAAAC-GTAATT-T-TAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
** *
72917909 GGTAAAATAGTAATTCTATAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
72917936 GGTAAAACAGTAATTCTGTAAA-CTGAT
1 GGTAAAACGGTAATTCTGTAAATC-GAG
* *
72917963 GGCAAAACAGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
72917990 GGTAAAACGGTAATTCTGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
72918017 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
72918044 GGTAAAATGGTAATT-T-TAAAATTGAG
1 GGTAAAACGGTAATTCTGT-AAATCGAG
* *
72918070 GGTAAAACGATAATTCTATAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
72918097 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
* *
72918124 GGTAAAACGGTAATTCTATAAATCAAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
*
72918151 GGTAAAACAGTAATT-TGTAAA-CTGAG
1 GGTAAAACGGTAATTCTGTAAATC-GAG
*
72918177 GGTAAAACAGTAA-T-TGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
72918202 GGTAAAACGGTAATTCTGTAAAT-GAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
72918228 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTGTAAATCGAG
72918255 TACTTTGGTA
Statistics
Matches: 332, Mismatches: 21, Indels: 34
0.86 0.05 0.09
Matches are distributed among these distances:
24 16 0.05
25 31 0.09
26 78 0.23
27 203 0.61
28 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.27
Consensus pattern (27 bp):
GGTAAAACGGTAATTCTGTAAATCGAG
Found at i:72918125 original size:107 final size:107
Alignment explanation
Indices: 72917858--72918254 Score: 562
Period size: 107 Copynumber: 3.8 Consensus size: 107
72917848 TCACAATCAA
* **
72917858 GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC-GTAATT-T-TAAATCGAGGGTAAAATAGT
1 GGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGT
*
72917920 AATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAT
66 AATTCTATAAATCGAGGGTAAAACAGTAATT-TGTAAACTGAG
* *
72917963 GGCAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA-CTGAGGGTAAAACGG
1 GGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGG
* ** *
72918027 TAATTCTGTAAATCGAGGGTAAAATGGTAATTT-TAAAATTGAG
65 TAATTCTATAAATCGAGGGTAAAACAGTAATTTGT-AAACTGAG
72918070 GGTAAAAC-GATAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 GGTAAAACAG-TAATTCTATAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
*
72918133 GTAATTCTATAAATCAAGGGTAAAACAGTAATTTGTAAACTGAG
64 GTAATTCTATAAATCGAGGGTAAAACAGTAATTTGTAAACTGAG
*
72918177 GGTAAAACAGTAA-T-TGTAAATCGAGGGTAAAACGGTAATTCTGTAAAT-GAGGGTAAAACGGT
1 GGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGT
*
72918239 AATTCTGTAAATCGAG
66 AATTCTATAAATCGAG
72918255 TACTTTGGTA
Statistics
Matches: 263, Mismatches: 18, Indels: 23
0.87 0.06 0.08
Matches are distributed among these distances:
104 28 0.11
105 65 0.25
106 11 0.04
107 112 0.43
108 47 0.18
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.27
Consensus pattern (107 bp):
GGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGT
AATTCTATAAATCGAGGGTAAAACAGTAATTTGTAAACTGAG
Found at i:72920266 original size:6 final size:6
Alignment explanation
Indices: 72920255--72920380 Score: 118
Period size: 6 Copynumber: 20.8 Consensus size: 6
72920245 AACCAAAATG
* *
72920255 AGAATC AGAATC AGTAA-C AGAATC AAAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
*
72920303 AGAATC AGAATC AGAATC AGTAA-C AGAACC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* *
72920351 AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AGAATC AGAAT--C AGAATC AGAATC AGAAT
72920381 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 9, Indels: 22
0.76 0.07 0.17
Matches are distributed among these distances:
5 8 0.08
6 83 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:72920282 original size:30 final size:30
Alignment explanation
Indices: 72920255--72920380 Score: 159
Period size: 30 Copynumber: 4.2 Consensus size: 30
72920245 AACCAAAATG
*
72920255 AGAATCAGAATCAGTAACAGAATCAAAATC
1 AGAATCAGAATCAGTAACAGAATCAGAATC
*
72920285 AGAATCA-ATATTAGTAACAGAATCAGAATC
1 AGAATCAGA-ATCAGTAACAGAATCAGAATC
72920315 AGAATCAGTAA-CAG-AACCAGAATCAGAATC
1 AGAATCAG-AATCAGTAA-CAGAATCAGAATC
* *
72920345 AGAATCAGAATTAGGTGACAGAATCAGAATC
1 AGAATCAGAATCA-GTAACAGAATCAGAATC
72920376 AGAAT
1 AGAAT
72920381 GTGAATGCAA
Statistics
Matches: 84, Mismatches: 5, Indels: 13
0.82 0.05 0.13
Matches are distributed among these distances:
29 5 0.06
30 57 0.68
31 20 0.24
32 2 0.02
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (30 bp):
AGAATCAGAATCAGTAACAGAATCAGAATC
Found at i:72920535 original size:27 final size:26
Alignment explanation
Indices: 72920498--72920556 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
72920488 AGCATGGCTG
*
72920498 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* **
72920524 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
72920551 CCAGAA
1 CCAGAA
72920557 TCAGGTAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:72920961 original size:27 final size:26
Alignment explanation
Indices: 72920882--72920964 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
72920872 TCGATCTGTC
* * *
72920882 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
72920908 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
72920935 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
72920962 AAC
1 AAC
72920965 GCTTCTTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:72921193 original size:27 final size:27
Alignment explanation
Indices: 72921163--72921358 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
72921153 GGGGCAAAAT
* * *
72921163 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72921190 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72921217 GGTATTTCTACCATACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72921244 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72921271 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72921298 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72921325 AGAAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72921352 AGTAATT
1 GGTAATT
72921359 TCACAATCAA
Statistics
Matches: 143, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:72921408 original size:27 final size:27
Alignment explanation
Indices: 72921368--72921778 Score: 480
Period size: 27 Copynumber: 15.2 Consensus size: 27
72921358 TTCACAATCA
*
72921368 AGGGTAAAACGGTAGTTCTGTAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* * ** *
72921395 AGGGTAAAATGGTAATTTTACAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* *
72921422 AGGATAAAACGGTAATTCTATAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
** *
72921449 AGGGTAAAATAGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* *** *
72921476 AGCGTAAAATAATAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATTG
*
72921503 AGGGTAAAACGGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* *
72921530 AGGATAAAACAGTAATTCTGTAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* **
72921557 AGGGTAAAACGGTAATTTTAAAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* *
72921584 AGGGTAAAACGGTAATTCTATAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
** *
72921611 AGGGTAAAACAATAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* *
72921638 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATTG
** * *
72921665 AGGGTAAAATAGTAATTGTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* *
72921692 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATTG
* *
72921719 AGGGTAAAACGGTAATTCTGTAAACTA
1 AGGGTAAAACGGTAATTCTGTAAATTG
*
72921746 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATTG
72921773 AGGGTA
1 AGGGTA
72921779 CTTTGGTAAT
Statistics
Matches: 322, Mismatches: 62, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 322 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTGTAAATTG
Found at i:72921789 original size:81 final size:81
Alignment explanation
Indices: 72921368--72921778 Score: 531
Period size: 81 Copynumber: 5.1 Consensus size: 81
72921358 TTCACAATCA
* * * * * * *
72921368 AGGGTAAAACGGTAGTTCTGTAAATTGAGGGTAAAATGGTAATTTTACAAATCGAGGATAAAACG
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* *
72921433 GTAATTCTATAAATTG
66 GTAATTCTGTAAACTG
* * *** *
72921449 AGGGTAAAATAGTAATTCTGTAAA-CTGAGCGTAAAATAATAATTCTGTAAATCGAGGGTAAAAC
1 AGGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
72921513 GGTAATTCTGTAAACTG
65 GGTAATTCTGTAAACTG
* * * * *
72921530 AGGATAAAACAGTAATTCTGTAAATTGAGGGTAAAACGGTAATTTTAAAAATTGAGGGTAAAACG
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
*
72921595 GTAATTCTATAAACTG
66 GTAATTCTGTAAACTG
* **
72921611 AGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
*
72921676 GTAATTGTGTAAACTG
66 GTAATTCTGTAAACTG
* *
72921692 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA-CTAAGGGTAAAAC
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAAC
72921756 GGTAATTCTGTAAA-TCG
65 GGTAATTCTGTAAACT-G
72921773 AGGGTA
1 AGGGTA
72921779 CTTTGGTAAT
Statistics
Matches: 285, Mismatches: 41, Indels: 8
0.85 0.12 0.02
Matches are distributed among these distances:
80 2 0.01
81 283 0.99
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
GTAATTCTGTAAACTG
Found at i:72924858 original size:25 final size:25
Alignment explanation
Indices: 72924800--72924858 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
72924790 ACACACGGCC
* *
72924800 ATGTGTACAGGCATATGGTTTGGCG
1 ATGTGTACGGGCATATAGTTTGGCG
* *
72924825 ATGTATACGGGCATGTAGTTTGGCCG
1 ATGTGTACGGGCATATAGTTTGG-CG
72924851 A-GTGTACG
1 ATGTGTACG
72924859 AGTGTGCGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 25 0.89
26 3 0.11
ACGTcount: A:0.20, C:0.14, G:0.36, T:0.31
Consensus pattern (25 bp):
ATGTGTACGGGCATATAGTTTGGCG
Done.