Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 222 of 352
Found at i:72927186 original size:14 final size:15
Alignment explanation
Indices: 72927167--72927196 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72927157 GTTTATTATA
72927167 TGTGAA-GTATCATG
1 TGTGAATGTATCATG
72927181 TGTGAATGTATCATG
1 TGTGAATGTATCATG
72927196 T
1 T
72927197 CTTAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (15 bp):
TGTGAATGTATCATG
Found at i:72929115 original size:43 final size:43
Alignment explanation
Indices: 72929067--72929199 Score: 130
Period size: 42 Copynumber: 3.1 Consensus size: 43
72929057 GGCTTTGAGC
*
72929067 CTAGCAGGCATAATGCCGGTGAAATGATATTGGACTTAAAGGT
1 CTAGCAAGCATAATGCCGGTGAAATGATATTGGACTTAAAGGT
* * * *** *
72929110 CTAGCAAGCTTTAA-GCTGGTG-AAT-ATTATTGGGCTCCGA-GC
1 CTAGCAAGC-ATAATGCCGGTGAAATGA-TATTGGACTTAAAGGT
* *
72929151 CTAGCAAGCATAATGTCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAAGCATAATGCCGGTGAAATGATATTGGACTTAAAGGT
72929194 CTAGCA
1 CTAGCA
72929200 GGTTTATTAC
Statistics
Matches: 67, Mismatches: 17, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
40 3 0.04
41 16 0.24
42 23 0.34
43 22 0.33
44 3 0.04
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (43 bp):
CTAGCAAGCATAATGCCGGTGAAATGATATTGGACTTAAAGGT
Found at i:72931608 original size:224 final size:224
Alignment explanation
Indices: 72931218--72931634 Score: 735
Period size: 224 Copynumber: 1.9 Consensus size: 224
72931208 ATTGAACTGA
*
72931218 TTGTAATATATTTGTGATATGACAAAATTGGAAAGGTATGAAAAGAAGTTTATGAAATGTGTGCA
1 TTGTAATATATTTGTGATATGACAAAATTGGAAAGGTATAAAAAGAAGTTTATGAAATGTGTGCA
72931283 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAAATCAAATTGGCTGGAA
66 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAAATCAAATTGGCTGGAA
* * *
72931348 CACAGGGAATGAGTACGATCGTTCACTAATGAATTGATGGAAAAGAGCATGGTTGGACCATGGTC
131 CACAGGGAATGAGTACGATCGTTCACTAATGAATTGACGAAAAAGACCATGGTTGGACCATGGTC
72931413 TTTTCCGTCAATTCATTAGTATAAAGTAT
196 TTTTCCGTCAATTCATTAGTATAAAGTAT
** *
72931442 TTGTAATATATTTGTGATATGACGGAATTGGAAAGGTATAAAAAGAAGTTTATGATATGTGTGCA
1 TTGTAATATATTTGTGATATGACAAAATTGGAAAGGTATAAAAAGAAGTTTATGAAATGTGTGCA
* *
72931507 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAGATCAAATTGGGTGGAA
66 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAAATCAAATTGGCTGGAA
* *
72931572 CGCATGGAATGAGTACGATCGTTCACTAATGAATTGACGAAAAAGACCATGGTTGGACCATGG
131 CACAGGGAATGAGTACGATCGTTCACTAATGAATTGACGAAAAAGACCATGGTTGGACCATGG
72931635 CAATACATGA
Statistics
Matches: 182, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
224 182 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.30
Consensus pattern (224 bp):
TTGTAATATATTTGTGATATGACAAAATTGGAAAGGTATAAAAAGAAGTTTATGAAATGTGTGCA
TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAAATCAAATTGGCTGGAA
CACAGGGAATGAGTACGATCGTTCACTAATGAATTGACGAAAAAGACCATGGTTGGACCATGGTC
TTTTCCGTCAATTCATTAGTATAAAGTAT
Found at i:72938813 original size:16 final size:17
Alignment explanation
Indices: 72938790--72938827 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
72938780 AATAAACAAT
72938790 TAAA-TAAATT-GGAAA
1 TAAATTAAATTGGGAAA
72938805 TAAATTAAATTGGGAAA
1 TAAATTAAATTGGGAAA
72938822 TAAATT
1 TAAATT
72938828 CGGAATTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 4 0.19
16 6 0.29
17 11 0.52
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (17 bp):
TAAATTAAATTGGGAAA
Found at i:72953440 original size:44 final size:44
Alignment explanation
Indices: 72953237--72953491 Score: 187
Period size: 46 Copynumber: 5.6 Consensus size: 44
72953227 AGATATGTGC
* * * * *
72953237 GCTAGTGTTAGACATGTTTGGGACATGCATCGGCCAC-ATAATAAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT--GT
* * * *
72953283 GCCAGTGTGAGACCATGTTTGGGACATGGCATCGGC-ATTGAGATGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGAT--GT
* * *
72953331 GCTAGTGTAAGACATGTTTAGGACATGCATCAGCCT-CGAGATGTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GGCTACGAGATG-T
* * *
72953376 AGCCAGTGTCAGACATGTCTGGGACATGCGTCGGCTACGAGATGT
1 -GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGT
*
72953421 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC-ACGGTTACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTAC-G--AGATGT
*
72953467 G-TCAGTGTAAGACCTGTCTGGGACA
1 GCT-AGTGTAAGACATGTCTGGGACA
72953492 CGACATCGAC
Statistics
Matches: 174, Mismatches: 22, Indels: 26
0.78 0.10 0.12
Matches are distributed among these distances:
43 2 0.01
44 33 0.19
45 6 0.03
46 80 0.46
47 30 0.17
48 22 0.13
49 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGT
Found at i:72953445 original size:90 final size:93
Alignment explanation
Indices: 72953237--72953451 Score: 251
Period size: 94 Copynumber: 2.3 Consensus size: 93
72953227 AGATATGTGC
* * * *
72953237 GCTAGTGTTAGACATGTTTGGGACATGCATCGGCCACATAATAAGAGCCAGTGTGAGACCATGTT
1 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCACATAATAAGAGCCAGTGTCAGACCATGTC
*
72953302 TGGGACATGGCATCGGCATTGAGATGAGT
66 TGGGACATGGCATCGGCATCGAGAT-AGT
* * * ***
72953331 GCTAGTGTAAGACATGTTTAGGACATGCATCAGCCTCGA-GATGTTAGCCAGTGTCAGA-CATGT
1 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCAC-ATAATAAGAGCCAGTGTCAGACCATGT
*
72953394 CTGGGACAT-GCGTCGGC-TACGAGAT-GT
65 CTGGGACATGGCATCGGCAT-CGAGATAGT
*
72953421 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 GCTAGTGTAAGACATGTTTGGGACATGCATC
72953452 GGCACGGTTA
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
90 31 0.30
91 1 0.01
92 12 0.11
93 13 0.12
94 47 0.45
95 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCACATAATAAGAGCCAGTGTCAGACCATGTC
TGGGACATGGCATCGGCATCGAGATAGT
Found at i:72953473 original size:90 final size:90
Alignment explanation
Indices: 72953237--72953491 Score: 239
Period size: 90 Copynumber: 2.8 Consensus size: 90
72953227 AGATATGTGC
* * * * * *
72953237 GCTAGTGTTAGACATGTTTGGGACATGCATCGGCCACATAATAAGAGCCAGTGTGAGACCATGTT
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGG-CAC-TAACATGTGCCAGTGTAAGA-CATGTC
*
72953302 TGGGACATGGCATCGGCATTGAGATGAGT
63 TGGGACATGGCATCGGCATCGAGAT-AGT
* * * * *
72953331 GCTAGTGTAAGACATGTTTAGGACATGCATCAGC-CTCGAGATGTTAGCCAGTGTCAGACATGTC
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCACT-AACATG-T-GCCAGTGTAAGACATGTC
*
72953395 TGGGACAT-GCGTCGGC-TACGAGAT-GT
63 TGGGACATGGCATCGGCAT-CGAGATAGT
* * * *
72953421 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCACGGTTACATGTGTCAGTGTAAGACCTGTCT
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCAC--TAACATGTGCCAGTGTAAGACATGTCT
72953486 GGGACA
64 GGGACA
72953492 CGACATCGAC
Statistics
Matches: 135, Mismatches: 19, Indels: 18
0.78 0.11 0.10
Matches are distributed among these distances:
90 55 0.41
91 4 0.03
92 20 0.15
93 15 0.11
94 41 0.30
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (90 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGGCACTAACATGTGCCAGTGTAAGACATGTCTGG
GACATGGCATCGGCATCGAGATAGT
Found at i:72955319 original size:24 final size:21
Alignment explanation
Indices: 72955292--72955342 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 21
72955282 TTGATAAGTG
*
72955292 ATTAAAACATCATAAATAATATGA
1 ATTAAAA-AT-ATAAA-AAGATGA
72955316 ATTAAAAATATAAAAAGATGA
1 ATTAAAAATATAAAAAGATGA
72955337 A-TAAAA
1 ATTAAAA
72955343 GAAGAAATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 5 0.19
21 7 0.27
22 5 0.19
23 2 0.08
24 7 0.27
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.25
Consensus pattern (21 bp):
ATTAAAAATATAAAAAGATGA
Found at i:72955338 original size:21 final size:24
Alignment explanation
Indices: 72955285--72955342 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 24
72955275 TATTATATTG
72955285 ATAAG-TG-ATTAAAACATCATAA
1 ATAAGATGAATTAAAACATCATAA
*
72955307 ATAATATGAATTAAAA-AT-ATAA
1 ATAAGATGAATTAAAACATCATAA
72955329 A-AAGATGAA-TAAAA
1 ATAAGATGAATTAAAA
72955343 GAAGAAATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 5 0.16
21 7 0.22
22 9 0.28
23 4 0.12
24 7 0.22
ACGTcount: A:0.62, C:0.03, G:0.09, T:0.26
Consensus pattern (24 bp):
ATAAGATGAATTAAAACATCATAA
Found at i:72960810 original size:30 final size:29
Alignment explanation
Indices: 72960774--72960837 Score: 119
Period size: 30 Copynumber: 2.2 Consensus size: 29
72960764 ATGAATCAAA
72960774 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
72960804 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
72960833 AGCTT
1 AGCTT
72960838 CAGCTACTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:72961795 original size:3 final size:3
Alignment explanation
Indices: 72961784--72961823 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
72961774 AATACAGATG
* *
72961784 TTA TCA TTA TTA TTA TT- TTA TTT TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
72961824 TCGTATGTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:72965174 original size:12 final size:12
Alignment explanation
Indices: 72965157--72965189 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
72965147 ATGGAATATT
72965157 TCAAAATCACCA
1 TCAAAATCACCA
72965169 TCAAAATCACCA
1 TCAAAATCACCA
72965181 TCAAAATCA
1 TCAAAATCA
72965190 AAAATTGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.18
Consensus pattern (12 bp):
TCAAAATCACCA
Found at i:72965398 original size:11 final size:11
Alignment explanation
Indices: 72965384--72965408 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
72965374 TTTAATTTAA
72965384 TTATAATTAGT
1 TTATAATTAGT
72965395 TTATAATTAGT
1 TTATAATTAGT
72965406 TTA
1 TTA
72965409 CCATTTTGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (11 bp):
TTATAATTAGT
Found at i:72968999 original size:27 final size:27
Alignment explanation
Indices: 72968969--72969237 Score: 291
Period size: 27 Copynumber: 10.2 Consensus size: 27
72968959 ATTACGAAAG
*
72968969 TACCATCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
72968996 TA-CCTCGATTTATAGAATTACTC-TTT
1 TACCCTCGATTTACAGAATTAC-CGTTT
*
72969022 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
72969049 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
72969076 TACCCTCGATTTAAAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
72969103 TACCTTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
72969130 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
72969157 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
72969184 TACCCTCGA-TTATAGAATTACC----
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
72969206 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
72969233 TACCC
1 TACCC
72969238 CTAGGGTGTT
Statistics
Matches: 206, Mismatches: 28, Indels: 16
0.82 0.11 0.06
Matches are distributed among these distances:
22 9 0.04
23 12 0.06
26 32 0.16
27 153 0.74
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:72969077 original size:54 final size:54
Alignment explanation
Indices: 72968969--72969237 Score: 338
Period size: 54 Copynumber: 5.1 Consensus size: 54
72968959 ATTACGAAAG
* * *
72968969 TACCATCGATTTACAGAATTACCGTTTTA-CCTCGATTTATAGAATTACTCTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTT
72969022 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTT
* * * *
72969076 TACCCTCGATTTAAAAAATTA-TCGTTTTACCTTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTTATAGAATTACTATTT
* * *
72969130 TACCCTCGATTTACAAAATTA-TCGTTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTTATAGAATTACTATTT
* * * *
72969184 TACCCTCGA-TTATAGAATTAC----CTACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTT
72969233 TACCC
1 TACCC
72969238 CTAGGGTGTT
Statistics
Matches: 196, Mismatches: 17, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
49 30 0.15
53 37 0.19
54 129 0.66
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTT
Found at i:72969776 original size:6 final size:6
Alignment explanation
Indices: 72969739--72969869 Score: 65
Period size: 6 Copynumber: 21.3 Consensus size: 6
72969729 TTGCATTCAC
* * * *
72969739 ATTCTA ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
72969788 -TCACCTA ATTCTG ATTCT- AGTTCTG ATTCTG ATTCTG -TCACCTG ATTCTA
1 AT--TCTG ATTCTG ATTCTG A-TTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
72969838 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
72969870 AATGTTTCAT
Statistics
Matches: 93, Mismatches: 19, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
5 6 0.06
6 74 0.80
7 10 0.11
8 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:72969802 original size:37 final size:37
Alignment explanation
Indices: 72969761--72969848 Score: 124
Period size: 37 Copynumber: 2.4 Consensus size: 37
72969751 ATTCTGTTAC
*
72969761 CTGATACTGATTCTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
* *
72969798 CTGATTCT-AGTTCTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGA-TTCTGATTCTAATTCTGTCACCTAATT
*
72969835 CTAATTCTGATTCT
1 CTGATTCTGATTCT
72969849 CATTTTGATT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
36 1 0.02
37 43 0.96
38 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.45
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
Found at i:72969833 original size:31 final size:31
Alignment explanation
Indices: 72969740--72969848 Score: 94
Period size: 31 Copynumber: 3.3 Consensus size: 31
72969730 TGCATTCACA
* * * *
72969740 TTCTAATTTTGATTCTGTTACCTGATACT-G
1 TTCTGATTCTGATTCTGTCACCTGATTCTAG
*
72969770 ATTCTGATTCTAATTCTGTCACCTAATTCTGATTCTAG
1 -TTCTGATTCTGATTCTGTCA-C-----CTGATTCTAG
*
72969808 TTCTGATTCTGATTCTGTCACCTGATTCTAA
1 TTCTGATTCTGATTCTGTCACCTGATTCTAG
72969839 TTCTGATTCT
1 TTCTGATTCT
72969849 CATTTTGATT
Statistics
Matches: 64, Mismatches: 7, Indels: 14
0.75 0.08 0.16
Matches are distributed among these distances:
31 35 0.55
32 1 0.02
36 1 0.02
37 26 0.41
38 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (31 bp):
TTCTGATTCTGATTCTGTCACCTGATTCTAG
Found at i:72969858 original size:37 final size:36
Alignment explanation
Indices: 72969739--72969860 Score: 121
Period size: 37 Copynumber: 3.4 Consensus size: 36
72969729 TTGCATTCAC
* *
72969739 ATTCTAATTTTGATTCTGTTACCTGATACTGATTCTG
1 ATTCT-ATTTTGATTCTGTCACCTGATTCTGATTCTG
*
72969776 ATTCTA-----ATTCTGTCACCTAATTCTGATTCT-
1 ATTCTATTTTGATTCTGTCACCTGATTCTGATTCTG
* *
72969806 AGTTCTGATTCTGATTCTGTCACCTGATTCTAATTCTG
1 A-TTCT-ATTTTGATTCTGTCACCTGATTCTGATTCTG
72969844 ATTCTCATTTTGATTCT
1 ATTCT-ATTTTGATTCT
72969861 AGTTCTGATA
Statistics
Matches: 70, Mismatches: 7, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
30 1 0.01
31 25 0.36
32 1 0.01
36 1 0.01
37 41 0.59
38 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.48
Consensus pattern (36 bp):
ATTCTATTTTGATTCTGTCACCTGATTCTGATTCTG
Found at i:72970889 original size:30 final size:30
Alignment explanation
Indices: 72970853--72970914 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
72970843 AAGTTCTAGT
*
72970853 TGAAGTGTGATAGTGATAGTAGGATCAGAG
1 TGAAGTGTGATAGTGATAGTACGATCAGAG
72970883 TGAAGTGTGATAGTGATAGTACGATCAGAG
1 TGAAGTGTGATAGTGATAGTACGATCAGAG
72970913 TG
1 TG
72970915 CGCAGCGGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.32, C:0.05, G:0.35, T:0.27
Consensus pattern (30 bp):
TGAAGTGTGATAGTGATAGTACGATCAGAG
Found at i:72972023 original size:27 final size:27
Alignment explanation
Indices: 72971993--72972319 Score: 309
Period size: 27 Copynumber: 12.2 Consensus size: 27
72971983 ATTACCAAAG
* *
72971993 TACCCTCAATTTACAGAAGTACCATTT
1 TACCCTCAATTTACAGAATTACCGTTT
* *
72972020 TACCCTCGATTTTACAGAATTACTGTTT
1 TACCCTC-AATTTACAGAATTACCGTTT
* *
72972048 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* ***
72972075 T-CCCTCATTTTACAGAATTATTATTT
1 TACCCTCAATTTACAGAATTACCGTTT
* * *
72972101 TACCATCGATTTACAAAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* * * *
72972128 TACCTTCGA-TTACATAATTATCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* * *
72972154 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* * * **
72972181 TACCCTCGATTTGCAAAATTACTATTT
1 TACCCTCAATTTACAGAATTACCGTTT
** *
72972208 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* *
72972235 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* *
72972262 TACCCTCAAGTTACA-AAATACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* * *
72972288 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCAATTTACAGAATTACCGTTT
72972315 TACCC
1 TACCC
72972320 CGAGGGTGTT
Statistics
Matches: 253, Mismatches: 43, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
26 67 0.26
27 163 0.64
28 23 0.09
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCAATTTACAGAATTACCGTTT
Found at i:72972102 original size:53 final size:54
Alignment explanation
Indices: 72971993--72972319 Score: 349
Period size: 53 Copynumber: 6.1 Consensus size: 54
72971983 ATTACCAAAG
* * * *
72971993 TACCCTCAATTTACAGAAGTACCATTTTACCCTCGATTTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGA-TTTACAGAATTACTATTT
* *
72972048 TACCCTCGATTTACAGAATTACTGTTTT-CCCTC-ATTTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGA-TTTACAGAATTACTATTT
* * * * *
72972101 TACCATCGATTTACAAAATTACCGTTTTACCTTCGA-TTACATAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACT-ATTT
* * * *
72972154 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTGCAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
* * * * *
72972208 TACCCTTGATTTATAGAATTACCGTTTTACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
* * * * * * *
72972262 TACCCTCAAGTTACA-AAATACCGTTTTACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
72972315 TACCC
1 TACCC
72972320 CGAGGGTGTT
Statistics
Matches: 232, Mismatches: 35, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.00
53 128 0.55
54 77 0.33
55 26 0.11
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
Found at i:72972160 original size:80 final size:80
Alignment explanation
Indices: 72971993--72972319 Score: 329
Period size: 80 Copynumber: 4.1 Consensus size: 80
72971983 ATTACCAAAG
* * * *
72971993 TACCCTCAATTTACAGAAGTACCATTTTACCCTCGATTTTACAGAATTACTGTTTTACCCTCGAT
1 TACCCTCAATTTACAGAATTACCATTTTACCCTCGA-TTTACAAAATTACCGTTTTACCTTCGAT
72972058 TTACAGAATTACTGTTT
65 TTACAGAATTAC-GTTT
* ** *
72972075 T-CCCTCATTTTACAGAATTATTATTTTACCATCGATTTACAAAATTACCGTTTTACCTTCGA-T
1 TACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCTTCGATT
*
72972138 TACATAATTATCGTTT
66 TACAGAATTA-CGTTT
* * * * * **
72972154 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTGCAAAATTACTATTTTACCCTT-GAT
1 TACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA-CCTTCGAT
*
72972218 TTATAGAATTACCGTTT
65 TTACAGAATTA-CGTTT
* ** * * * *
72972235 TACCCTCAATTTATAGAATTACTGTTTTACCCTCAAGTTACAAAA-TACCGTTTTACCCTCAATT
1 TACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCTTCGATT
* * *
72972299 TATAAAATTACCATTT
66 TACAGAATTA-CGTTT
72972315 TACCC
1 TACCC
72972320 CGAGGGTGTT
Statistics
Matches: 205, Mismatches: 35, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
79 18 0.09
80 102 0.50
81 84 0.41
82 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (80 bp):
TACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCTTCGATT
TACAGAATTACGTTT
Found at i:72972868 original size:6 final size:6
Alignment explanation
Indices: 72972806--72972927 Score: 88
Period size: 6 Copynumber: 19.8 Consensus size: 6
72972796 TTGCATTCAC
* * * *
72972806 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
72972855 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * *
72972905 ATTCTG GTTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
72972928 AGTTTTGATA
Statistics
Matches: 89, Mismatches: 18, Indels: 18
0.71 0.14 0.14
Matches are distributed among these distances:
5 4 0.04
6 73 0.82
7 9 0.10
8 3 0.03
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:72972907 original size:37 final size:37
Alignment explanation
Indices: 72972828--72972927 Score: 146
Period size: 37 Copynumber: 2.7 Consensus size: 37
72972818 ATTCTGTTAC
* * *
72972828 CTGATACTAATTCTGATTCTAATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATTCTGATTCTGTCACCTGATT
72972865 CTGATTCTGATTCTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATTCTGATTCTGTCACCTGATT
* * *
72972902 CTGATTCTGGTTCTCATTTTGATTCT
1 CTGATTCTGATTCTGATTCTGATTCT
72972928 AGTTTTGATA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGATTCTGTCACCTGATT
Found at i:72972910 original size:31 final size:31
Alignment explanation
Indices: 72972806--72972885 Score: 115
Period size: 31 Copynumber: 2.6 Consensus size: 31
72972796 TTGCATTCAC
* *
72972806 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
* * *
72972837 ATTCTGATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
72972868 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
72972886 ATTCTGTCAC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTA
Found at i:72995250 original size:79 final size:79
Alignment explanation
Indices: 72995153--72995304 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 79
72995143 AATGATGTCC
* *
72995153 GGGCTAGTCCCGAAGGCTTTGTGCTGAGTGACCATATCC-GACTAAGATCC-GAAGGCATTTGTG
1 GGGCTAGTCCCGAAGGCTTGGTGC-GAGTGACCAAATCCGGACTAAG-TCCTGAAGGCATTTGTG
72995216 CGAGTTACTAAATTCT
64 CGAGTTACTAAATTCT
* * **
72995232 GGGCTAAG-CCCGAAGGCTTGGTGCGAGTTACTAAATCCGGGTTAAGTCCTGAAGGCATTTGTGC
1 GGGCT-AGTCCCGAAGGCTTGGTGCGAGTGACCAAATCCGGACTAAGTCCTGAAGGCATTTGTGC
72995296 GAGTTACTA
65 GAGTTACTA
72995305 TAACCGGGCT
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
78 14 0.22
79 48 0.75
80 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (79 bp):
GGGCTAGTCCCGAAGGCTTGGTGCGAGTGACCAAATCCGGACTAAGTCCTGAAGGCATTTGTGCG
AGTTACTAAATTCT
Found at i:72995259 original size:39 final size:40
Alignment explanation
Indices: 72995150--72995329 Score: 180
Period size: 39 Copynumber: 4.6 Consensus size: 40
72995140 TCGAATGATG
* * *
72995150 TCCGGGCT-AGTCCCGAAGGC-TTTGTGCTGAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
72995189 TCC-GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
72995228 TTCTGGGCTAAG-CCCGAAGGC-TTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
72995267 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72995308 -CCGGGCTATGTCCC-AA-GCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTT
72995330 TGAAACGAGT
Statistics
Matches: 118, Mismatches: 14, Indels: 19
0.78 0.09 0.13
Matches are distributed among these distances:
38 18 0.15
39 48 0.41
40 44 0.37
41 8 0.07
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73001276 original size:54 final size:54
Alignment explanation
Indices: 73001190--73001360 Score: 244
Period size: 54 Copynumber: 3.1 Consensus size: 54
73001180 ACAAGGGATG
73001190 ATGGGCAAAACATGTCTATG-AACATGTTGTGTTAATGGAAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTC-ATGAAACAT-TTGTGTTAATGG-AAAAAT-AAATAAGAAGC
73001247 A-GGGC-AAACATGTCATGAAAC-TCTTGTGTTAATGGAAAAATAAAT-AGAAGC
1 ATGGGCAAAACATGTCATGAAACAT-TTGTGTTAATGGAAAAATAAATAAGAAGC
*
73001298 ATGGGCAAAACATGTCATGAAACAGTTTGTGTTAATGGAATAATAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACA-TTTGTGTTAATGGAAAAATAAATAAGAAGC
73001353 ATGGGCAA
1 ATGGGCAA
73001361 TAAACTATAA
Statistics
Matches: 106, Mismatches: 2, Indels: 14
0.87 0.02 0.11
Matches are distributed among these distances:
51 7 0.07
52 8 0.08
53 22 0.21
54 37 0.35
55 27 0.25
56 4 0.04
57 1 0.01
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (54 bp):
ATGGGCAAAACATGTCATGAAACATTTGTGTTAATGGAAAAATAAATAAGAAGC
Found at i:73002652 original size:41 final size:38
Alignment explanation
Indices: 73002511--73002652 Score: 135
Period size: 39 Copynumber: 3.6 Consensus size: 38
73002501 AAGAATAGAC
* * * *
73002511 AGGCATTTGTGCAAGATTACTAATCTCCGGCT-AGCCCCGA
1 AGGCATTTGAGCGAG-TTACTAA-ATCCGG-TAAGTCCCGA
73002551 AGGCCA-TTGATGCGAGTTACTAAATCCGGTAAGTCCCGA
1 AGG-CATTTGA-GCGAGTTACTAAATCCGGTAAGTCCCGA
* *
73002590 AGGCAATTTGTGCGAGTTACTAAATCTGGGGTTAAGTCCCGA
1 AGGC-ATTTGAGCGAGTTACTAAATC--CGG-TAAGTCCCGA
73002632 AGGCATTTGAGCGAGTTACTA
1 AGGCATTTGAGCGAGTTACTA
73002653 TAATGACCGG
Statistics
Matches: 87, Mismatches: 7, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
38 2 0.02
39 31 0.36
40 16 0.18
41 24 0.28
42 14 0.16
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (38 bp):
AGGCATTTGAGCGAGTTACTAAATCCGGTAAGTCCCGA
Found at i:73002685 original size:44 final size:41
Alignment explanation
Indices: 73002546--73002682 Score: 149
Period size: 39 Copynumber: 3.3 Consensus size: 41
73002536 TCCGGCTAGC
73002546 CCCGAAGGCCA-TTGATGCGAGTTACTAAATCC--GG-TAAGT
1 CCCGAAGG-CATTTGA-GCGAGTTACTAAATCCGGGGCTAAGT
* * *
73002585 CCCGAAGGCAATTTGTGCGAGTTACTAAATCTGGGGTTAAGT
1 CCCGAAGGC-ATTTGAGCGAGTTACTAAATCCGGGGCTAAGT
*
73002627 CCCGAAGGCATTTGAGCGAGTTACTATAATGACCGGGGCTATGT
1 CCCGAAGGCATTTGAGCGAGTTACTA-AAT--CCGGGGCTAAGT
73002671 CCCG-AGGCATTT
1 CCCGAAGGCATTT
73002683 TGAAGAGTAG
Statistics
Matches: 84, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
38 1 0.01
39 24 0.29
40 3 0.04
41 18 0.21
42 17 0.20
43 8 0.10
44 13 0.15
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (41 bp):
CCCGAAGGCATTTGAGCGAGTTACTAAATCCGGGGCTAAGT
Found at i:73015316 original size:79 final size:81
Alignment explanation
Indices: 73015180--73015362 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
73015170 TCGAATGATG
* *
73015180 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
73015244 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
73015259 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
73015321 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
73015339 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
73015363 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:73015378 original size:40 final size:40
Alignment explanation
Indices: 73015181--73015364 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
73015171 CGAATGATGT
* * * *
73015181 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
73015221 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
73015261 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73015299 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73015340 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
73015365 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:73015386 original size:79 final size:79
Alignment explanation
Indices: 73015233--73015397 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
73015223 GGACTAAGAT
* **
73015233 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
73015298 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
73015312 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
73015375 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
73015391 CCGAAGG
1 CCGAAGG
73015398 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:73021249 original size:56 final size:56
Alignment explanation
Indices: 73021163--73021282 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
73021153 ACAAGGGATG
73021163 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
73021219 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
73021275 ATGGGCAA
1 ATGGGCAA
73021283 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:73022644 original size:40 final size:40
Alignment explanation
Indices: 73022408--73022630 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
73022398 TCGAATGATG
* * * *
73022408 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
73022448 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
73022487 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73022525 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
73022565 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
73022606 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73022631 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
37 6 0.04
38 27 0.17
39 25 0.15
40 94 0.58
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73025402 original size:40 final size:39
Alignment explanation
Indices: 73025318--73025502 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
73025308 TCGAATGATG
* * * *
73025318 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
73025358 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
73025398 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
73025437 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTA-AA
*
73025478 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
73025503 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 37 0.30
40 76 0.61
41 12 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73025456 original size:79 final size:81
Alignment explanation
Indices: 73025318--73025500 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
73025308 TCGAATGATG
* *
73025318 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
73025382 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
73025397 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCTGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCC-GAAGGCA
73025459 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
73025477 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
73025501 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.63
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:73025524 original size:79 final size:78
Alignment explanation
Indices: 73025355--73025535 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 78
73025345 CTAAGTGACC
* *
73025355 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCAT
**
73025420 TGGTGCGAGTTACT
65 TGGAACGAGTTACT
* *
73025434 AAATCCGGGTTAAG-TCCTGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGG
1 ATATCC-GGTTAAGATCC-GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGG
*
73025497 CATTTGAACGAG-TAGCT
62 CATTGGAACGAGTTA-CT
73025514 ATATCCGGTTAA-ATTCCGAAGG
1 ATATCCGGTTAAGA-TCCGAAGG
73025536 TACGTGATTC
Statistics
Matches: 87, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
78 5 0.06
79 53 0.61
80 29 0.33
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (78 bp):
ATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:73038912 original size:20 final size:20
Alignment explanation
Indices: 73038873--73038959 Score: 122
Period size: 20 Copynumber: 4.3 Consensus size: 20
73038863 GATATGATAT
*
73038873 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
* *
73038893 ACATAATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
*
73038913 ACATGATATGTATGAAATGA
1 ACATGATATGTATGAAATGC
73038933 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
73038953 ACATGAT
1 ACATGAT
73038960 GTATTCATAA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
20 57 0.97
21 2 0.03
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:73039122 original size:25 final size:26
Alignment explanation
Indices: 73039009--73039121 Score: 183
Period size: 26 Copynumber: 4.4 Consensus size: 26
73038999 GAGGAAGTGT
*
73039009 AAAAGGGCTTATGCCCCAGTTCATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
73039035 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
73039061 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
73039087 AAAAGGGCTT-TGTCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
73039112 AAAAGGGCTT
1 AAAAGGGCTT
73039122 TTCCCAGTTA
Statistics
Matches: 82, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 22 0.27
26 60 0.73
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:73039333 original size:42 final size:42
Alignment explanation
Indices: 73039274--73039365 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
73039264 TAGTCTCCCA
* ** *
73039274 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
73039316 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
73039358 AAATGGGC
1 AAATGGGC
73039366 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:73039430 original size:31 final size:31
Alignment explanation
Indices: 73039389--73039498 Score: 166
Period size: 31 Copynumber: 3.5 Consensus size: 31
73039379 CATTTACAGT
* * *
73039389 AAAGGGTTCGGCCTAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
73039420 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
73039451 AAAGGTTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
73039482 AAAGGCTTTGACCCAGT
1 AAAGGCTTCGGCCCAGT
73039499 AACCGTTAAA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:73042164 original size:27 final size:26
Alignment explanation
Indices: 73042093--73042200 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 26
73042083 TGGAGGAAGC
73042093 GTTCTAGTGGC-CATGCCACAAATATCT
1 GTTCTAGTGGCTC-TGCCAC-AATATCT
* *
73042120 GTTTCTGGTGGCTATGCCACAAATATCT
1 G-TTCTAGTGGCTCTGCCAC-AATATCT
73042148 GTTCTAGTGGCTCTGCCACAATATCT
1 GTTCTAGTGGCTCTGCCACAATATCT
* * *
73042174 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTAGTGGCTCTGCCACAATATCT
73042201 ATTTTGCCAG
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
26 9 0.13
27 38 0.54
28 24 0.34
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (26 bp):
GTTCTAGTGGCTCTGCCACAATATCT
Found at i:73042195 original size:54 final size:54
Alignment explanation
Indices: 73042093--73042200 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 54
73042083 TGGAGGAAGC
* *
73042093 GTTCTAGTGGCCATGCCACAAATATCTGTTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTAGTGGCCATGCCACAAATATCTGTATCTGGTGACTATGCCAC-AATATCT
* *
73042148 GTTCTAGTGGCTC-TGCCAC-AATATCTGTATCTGGTGACTCTGTCACAATATCT
1 GTTCTAGTGGC-CATGCCACAAATATCTGTATCTGGTGACTATGCCACAATATCT
73042201 ATTTTGCCAG
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
53 7 0.15
54 23 0.48
55 17 0.35
56 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (54 bp):
GTTCTAGTGGCCATGCCACAAATATCTGTATCTGGTGACTATGCCACAATATCT
Found at i:73048706 original size:43 final size:43
Alignment explanation
Indices: 73048541--73048708 Score: 173
Period size: 43 Copynumber: 4.0 Consensus size: 43
73048531 ATATCATACA
* * **
73048541 ATGCCAACGTCCCAGACATTGTCTTACATGCTATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAGATCACATATCG
* * * *
73048584 AGGCC-ACTGTCCTAGACAAGGTCTTACACGA-ATCAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAGATCACATATCG
*
73048625 ATGCCAATGTCCCAGACATGGTCTTACACGTAG-TCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AGATCACATATCG
* ** *
73048668 ATGCCAACGTCTCAGATGTGGTCTTACACGAGAACACATAT
1 ATGCCAACGTCCCAGACATGGTCTTACACGAGATCACATAT
73048709 AGGAAATCCT
Statistics
Matches: 102, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
41 26 0.25
42 19 0.19
43 57 0.56
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAGATCACATATCG
Found at i:73054330 original size:38 final size:38
Alignment explanation
Indices: 73054270--73054576 Score: 429
Period size: 38 Copynumber: 8.1 Consensus size: 38
73054260 ATATTTGATG
* ** * * *
73054270 TATATCTGGGTTAAATCTCGCAGGCTTCATGCTAGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
** *
73054308 TATATCTAGGTTTTATCCCGCAGGCTTCGTGCTTGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
*
73054346 TATATCCGGGTTTTATCCCGCAGGTTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
73054384 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
73054422 TATATCCGGG-TTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* * *
73054459 TATATCCGGG-TATATCCCGCAGGCTTTGTGCCGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
** *
73054496 TATATTTGGGTTTTATCCTGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
** *
73054534 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
73054572 TATAT
1 TATAT
73054577 TTGAGCTTAA
Statistics
Matches: 242, Mismatches: 26, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
37 69 0.29
38 173 0.71
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.38
Consensus pattern (38 bp):
TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
Found at i:73059546 original size:40 final size:40
Alignment explanation
Indices: 73059472--73059653 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
73059462 AACCCAAGTA
* *
73059472 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
73059511 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
73059551 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
73059591 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
73059631 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
73059654 CATTCGAATA
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.09
40 116 0.89
41 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:73066692 original size:8 final size:8
Alignment explanation
Indices: 73066679--73066703 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
73066669 ATTCATTAAG
73066679 GGTAAAAT
1 GGTAAAAT
73066687 GGTAAAAT
1 GGTAAAAT
73066695 GGTAAAAT
1 GGTAAAAT
73066703 G
1 G
73066704 TGTATTAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (8 bp):
GGTAAAAT
Found at i:73067622 original size:43 final size:43
Alignment explanation
Indices: 73067574--73067736 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 43
73067564 ATCGAGATGT
* *
73067574 GATTACATGTAAGACCATGTTTGGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
* * *
73067617 GATTACGTGTAATACCATGTCTCGGACATTGGCATCGTA-TGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
* * * ** *
73067659 TAATTTCGTGTAAGACTTTGTCTGGGACAATGGCATCG-ATATGTA
1 -GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TG-A
* * *
73067704 -TTTACATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT
73067737 TGTACGAGTT
Statistics
Matches: 97, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
42 10 0.10
43 84 0.87
44 2 0.02
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
Found at i:73069678 original size:68 final size:68
Alignment explanation
Indices: 73069564--73069802 Score: 291
Period size: 68 Copynumber: 3.5 Consensus size: 68
73069554 CTTACAAGAA
* * *
73069564 TGTAAGACCATAGCTGGACTATGGCAACGTATGAAGTCCGCCAGGACAGTAAACATGACATCATA
1 TGTAAGACCATAGCTGGGCTATGGCAACATATGAATTCCGCCAGGACAGTAAACATGACATCATA
73069629 TAG
66 TAG
* * ** * * ** *
73069632 TGTAAGACCATAGTTGGGCTGTGGCAACATATGAATTCTACTAGGACCGTTTACATGACATTATA
1 TGTAAGACCATAGCTGGGCTATGGCAACATATGAATTCCGCCAGGACAGTAAACATGACATCATA
73069697 TAG
66 TAG
* ** * * *
73069700 TGTAAGACCATAGCTGGGTTATGGCAACGCATG-ATGTCCGCCAGGATAGTAAACGTGGCATCAT
1 TGTAAGACCATAGCTGGGCTATGGCAACATATGAAT-TCCGCCAGGACAGTAAACATGACATCAT
73069764 ATAG
65 ATAG
*
73069768 TGTAAGACCATAGCTGGGCTATGGAAACATATGAA
1 TGTAAGACCATAGCTGGGCTATGGCAACATATGAA
73069803 GTCCATTAGG
Statistics
Matches: 138, Mismatches: 31, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
67 2 0.01
68 135 0.98
69 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (68 bp):
TGTAAGACCATAGCTGGGCTATGGCAACATATGAATTCCGCCAGGACAGTAAACATGACATCATA
TAG
Found at i:73069813 original size:136 final size:136
Alignment explanation
Indices: 73069564--73069814 Score: 385
Period size: 136 Copynumber: 1.8 Consensus size: 136
73069554 CTTACAAGAA
*
73069564 TGTAAGACCATAGCTGGACTATGGCAACGTATGAAGTCCGCCAGGACAGTAAACATGACATCATA
1 TGTAAGACCATAGCTGGACTATGGCAACGCATGAAGTCCGCCAGGACAGTAAACATGACATCATA
* * * * *
73069629 TAGTGTAAGACCATAGTTGGGCTGTGGCAACATATGAATTCTACTAGGACCGTTTACATGACATT
66 TAGTGTAAGACCATAGCTGGGCTATGGAAACATATGAAGTCCACTAGGACCGTTTACATGACATT
73069694 ATATAG
131 ATATAG
** * * * *
73069700 TGTAAGACCATAGCTGGGTTATGGCAACGCATGATGTCCGCCAGGATAGTAAACGTGGCATCATA
1 TGTAAGACCATAGCTGGACTATGGCAACGCATGAAGTCCGCCAGGACAGTAAACATGACATCATA
*
73069765 TAGTGTAAGACCATAGCTGGGCTATGGAAACATATGAAGTCCATTAGGAC
66 TAGTGTAAGACCATAGCTGGGCTATGGAAACATATGAAGTCCACTAGGAC
73069815 ATTGAACTAG
Statistics
Matches: 102, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
136 102 1.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (136 bp):
TGTAAGACCATAGCTGGACTATGGCAACGCATGAAGTCCGCCAGGACAGTAAACATGACATCATA
TAGTGTAAGACCATAGCTGGGCTATGGAAACATATGAAGTCCACTAGGACCGTTTACATGACATT
ATATAG
Found at i:73073222 original size:22 final size:22
Alignment explanation
Indices: 73073194--73073241 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
73073184 CACGATTTTT
73073194 TCAAAATGACATACTTAAAGGA
1 TCAAAATGACATACTTAAAGGA
*
73073216 TCAAAATTACATACTTAAAGGA
1 TCAAAATGACATACTTAAAGGA
73073238 -CAAA
1 TCAAA
73073242 TGGACTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.52, C:0.15, G:0.10, T:0.23
Consensus pattern (22 bp):
TCAAAATGACATACTTAAAGGA
Found at i:73074775 original size:6 final size:6
Alignment explanation
Indices: 73074764--73074932 Score: 152
Period size: 6 Copynumber: 27.8 Consensus size: 6
73074754 AACCAAAATG
*
73074764 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
73074812 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * *
73074861 AGAATC AGAATC AGTATT AGTAA-C AGAATC AAAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
*
73074909 AG-GTGAC AGAATC AGAATC AGAAT
1 AGAAT--C AGAATC AGAATC AGAAT
73074933 GTGAATGCAA
Statistics
Matches: 133, Mismatches: 16, Indels: 28
0.75 0.09 0.16
Matches are distributed among these distances:
5 9 0.07
6 113 0.85
7 8 0.06
8 3 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:73074779 original size:30 final size:30
Alignment explanation
Indices: 73074743--73074932 Score: 195
Period size: 30 Copynumber: 6.1 Consensus size: 30
73074733 AAGAAACATT
* *
73074743 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* *
73074773 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
73074803 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
73074833 ATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGA
1 ATCAGAATTA---G---GAA-CAGAATCAGAATCAGA
* * *
73074870 ATCAGTATTAGTAACAGAATCAAAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
73074900 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
73074931 AT
1 AT
73074933 GTGAATGCAA
Statistics
Matches: 136, Mismatches: 13, Indels: 21
0.80 0.08 0.12
Matches are distributed among these distances:
29 1 0.01
30 82 0.60
31 24 0.18
33 1 0.01
34 1 0.01
36 2 0.01
37 25 0.18
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:73074870 original size:67 final size:67
Alignment explanation
Indices: 73074787--73074932 Score: 274
Period size: 67 Copynumber: 2.2 Consensus size: 67
73074777 GAATCAGTAA
*
73074787 CAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGA
1 CAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAATCAGAATCAGAATTAGGTGACAGA
73074852 AT
66 AT
*
73074854 CAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAAAATCAGAATCAGAATTAGGTGACAGA
1 CAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAATCAGAATCAGAATTAGGTGACAGA
73074919 AT
66 AT
73074921 CAGAATCAGAAT
1 CAGAATCAGAAT
73074933 GTGAATGCAA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 77 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (67 bp):
CAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAATCAGAATCAGAATTAGGTGACAGA
AT
Found at i:73075121 original size:27 final size:27
Alignment explanation
Indices: 73075050--73075123 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
73075040 AGCATGTCTG
* *
73075050 CCAGAA-CAGATATTGTGACAGAGTCA
1 CCAGAATCAGATATTGTGGCAGAGCCA
73075076 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATATTGTGGCAGAGCCA
*
73075103 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATATTGTGGCA
73075124 AACCCACCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
25 1 0.02
26 4 0.10
27 35 0.83
28 2 0.05
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGAATCAGATATTGTGGCAGAGCCA
Found at i:73075130 original size:27 final size:27
Alignment explanation
Indices: 73075074--73075131 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
73075064 GTGACAGAGT
* * *
73075074 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
73075101 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
73075128 CACC
1 CACC
73075132 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:73075336 original size:22 final size:22
Alignment explanation
Indices: 73075288--73075346 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
73075278 GTAAATACGT
*
73075288 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
73075310 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
73075332 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
73075347 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:73075473 original size:27 final size:28
Alignment explanation
Indices: 73075435--73075515 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 28
73075425 CGATCGGTCA
*
73075435 ACAGATATTGTGACAGAGTCACCA-AAT
1 ACAGATATTGTGACAGAGCCACCAGAAT
*
73075462 ACAGATATTGTGGCAGAGCCACCAGAAT
1 ACAGATATTGTGACAGAGCCACCAGAAT
* *
73075490 A-A-ATATTTGTGGCATAGCCACCAGAA
1 ACAGATA-TTGTGACAGAGCCACCAGAA
73075516 CGCTTCCTCC
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
26 3 0.06
27 42 0.86
28 4 0.08
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (28 bp):
ACAGATATTGTGACAGAGCCACCAGAAT
Found at i:73075745 original size:27 final size:27
Alignment explanation
Indices: 73075715--73075902 Score: 205
Period size: 27 Copynumber: 7.0 Consensus size: 27
73075705 GGGGCAAAAT
* * * *
73075715 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73075742 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
73075769 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
73075796 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
73075823 GGTAATTCTATCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
73075850 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
73075877 GGAAATTCTACCCTATAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
73075903 TAGTAATTTC
Statistics
Matches: 138, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:73075859 original size:81 final size:81
Alignment explanation
Indices: 73075742--73075910 Score: 241
Period size: 81 Copynumber: 2.1 Consensus size: 81
73075732 AAGGTATCTC
* *
73075742 GGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTA
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGA-AATTCTA
73075806 CCCTACAGGGGTATTTT
65 CCCTACAGGGGTATTTT
* * * * *
73075823 GGTAATTCTATCCTATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGGAAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGAAATTCTAC
*
73075888 CCTATAGGGGTATTTT
66 CCTACAGGGGTATTTT
*
73075904 AGTAATT
1 GGTAATT
73075911 TCACAATCAA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 76 0.97
82 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGAAATTCTAC
CCTACAGGGGTATTTT
Found at i:73075903 original size:54 final size:54
Alignment explanation
Indices: 73075743--73075910 Score: 239
Period size: 54 Copynumber: 3.1 Consensus size: 54
73075733 AGGTATCTCG
* * * *
73075743 GTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTA-TTTC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTA
* *
73075796 GATAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTA
* * *
73075851 GTAATTCTACCCTATAGGGGTATTTCGGAAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTA
73075905 GTAATT
1 GTAATT
73075911 TCACAATCAA
Statistics
Matches: 102, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 1 0.01
54 97 0.95
55 4 0.04
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.38
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTA
Found at i:73076349 original size:27 final size:27
Alignment explanation
Indices: 73075915--73076342 Score: 551
Period size: 27 Copynumber: 15.9 Consensus size: 27
73075905 GTAATTTCAC
* *
73075915 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
73075942 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
73075969 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
73075996 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
73076023 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
73076050 AATCGAGGGTAAAA-AGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
73076076 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
73076103 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
73076130 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
73076157 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
73076184 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
73076211 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
73076238 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
73076265 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
73076292 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
73076319 AATCAAGGGTAAAACGGTAATTCT
1 AATCGAGGGTAAAACGGTAATTCT
73076343 ACAAATCGGG
Statistics
Matches: 351, Mismatches: 41, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
25 1 0.00
26 25 0.07
27 321 0.91
28 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:73077253 original size:27 final size:27
Alignment explanation
Indices: 73077222--73077316 Score: 138
Period size: 27 Copynumber: 3.5 Consensus size: 27
73077212 TAGGCCCACA
* *
73077222 ATTTTGGTAATTTTAC-AAACTAGGGGT
1 ATTTTGGTAATTTTACTAATCGA-GGGT
*
73077249 ATTTTGGTAATTTTGCTAATCGAGGGT
1 ATTTTGGTAATTTTACTAATCGAGGGT
*
73077276 ATTTTGGTAATTTTCCTAATCGAGGGT
1 ATTTTGGTAATTTTACTAATCGAGGGT
73077303 ATTTTGGTAATTTT
1 ATTTTGGTAATTTT
73077317 TTAAACCAAG
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 59 0.94
28 4 0.06
ACGTcount: A:0.24, C:0.07, G:0.22, T:0.46
Consensus pattern (27 bp):
ATTTTGGTAATTTTACTAATCGAGGGT
Found at i:73077328 original size:27 final size:27
Alignment explanation
Indices: 73077222--73077359 Score: 122
Period size: 27 Copynumber: 5.1 Consensus size: 27
73077212 TAGGCCCACA
* *
73077222 ATTTTGGTAATTTTAC-AAACTAGGGGT
1 ATTTTGGTAATTTT-CTAAACCAAGGGT
* *
73077249 ATTTTGGTAATTTTGCT-AATCGAGGGT
1 ATTTTGGTAATTTT-CTAAACCAAGGGT
* *
73077276 ATTTTGGTAATTTTCCT-AATCGAGGGT
1 ATTTTGGTAATTTT-CTAAACCAAGGGT
*
73077303 ATTTTGGTAATTTTTTAAACCAAGGGT
1 ATTTTGGTAATTTTCTAAACCAAGGGT
** * *
73077330 A-TTCAGTAGTTTTGTAAACCAAGGGT
1 ATTTTGGTAATTTTCTAAACCAAGGGT
73077356 ATTT
1 ATTT
73077360 CAGTAATTCT
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
26 23 0.24
27 72 0.76
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.43
Consensus pattern (27 bp):
ATTTTGGTAATTTTCTAAACCAAGGGT
Found at i:73077329 original size:54 final size:54
Alignment explanation
Indices: 73077222--73077332 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
73077212 TAGGCCCACA
* * *
73077222 ATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGCTAATCGAGGGT
1 ATTTTGGTAATTTTACAAACGAGGGGTATTTTGGTAATTTTGCTAACCAAGGGT
* * *
73077276 ATTTTGGTAATTTTCCTAATCGA-GGGTATTTTGGTAATTTT-TTAAACCAAGGGT
1 ATTTTGGTAATTTTAC-AAACGAGGGGTATTTTGGTAATTTTGCT-AACCAAGGGT
73077330 ATT
1 ATT
73077333 CAGTAGTTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
53 1 0.02
54 44 0.90
55 4 0.08
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (54 bp):
ATTTTGGTAATTTTACAAACGAGGGGTATTTTGGTAATTTTGCTAACCAAGGGT
Found at i:73077347 original size:26 final size:27
Alignment explanation
Indices: 73077298--73077364 Score: 91
Period size: 26 Copynumber: 2.5 Consensus size: 27
73077288 TTCCTAATCG
** * *
73077298 AGGGTATTTTGGTAATTTTTTAAACCA
1 AGGGTATTTCAGTAGTTTTGTAAACCA
73077325 AGGGTA-TTCAGTAGTTTTGTAAACCA
1 AGGGTATTTCAGTAGTTTTGTAAACCA
73077351 AGGGTATTTCAGTA
1 AGGGTATTTCAGTA
73077365 ATTCTACCCT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 22 0.63
27 13 0.37
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAGTTTTGTAAACCA
Found at i:73077386 original size:27 final size:27
Alignment explanation
Indices: 73077356--73077429 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
73077346 AACCAAGGGT
73077356 ATTTCAGTAATTCTACCCTATAGGGGC
1 ATTTCAGTAATTCTACCCTATAGGGGC
* *
73077383 ATTTCAGTAATTTTACCCTATAGGGGT
1 ATTTCAGTAATTCTACCCTATAGGGGC
* *
73077410 ATTTCAGTAATACTAGCCTA
1 ATTTCAGTAATTCTACCCTA
73077430 CAGATATGAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTATAGGGGC
Found at i:73093375 original size:5 final size:5
Alignment explanation
Indices: 73093365--73093393 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
73093355 TTTTTCTTGC
73093365 AATTT AATTT AATTT AATTT AATTT AATT
1 AATTT AATTT AATTT AATTT AATTT AATT
73093394 ATTATTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
AATTT
Found at i:73103025 original size:13 final size:13
Alignment explanation
Indices: 73102997--73103033 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
73102987 TCAATATTTA
*
73102997 AATTTACATCATTC
1 AATTT-CATGATTC
73103011 AATTTCATGATTC
1 AATTTCATGATTC
73103024 AATTTCATGA
1 AATTTCATGA
73103034 CCAAAACTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.43
Consensus pattern (13 bp):
AATTTCATGATTC
Found at i:73105422 original size:17 final size:17
Alignment explanation
Indices: 73105400--73105432 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
73105390 CACTAAAATG
*
73105400 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
73105417 AAAATGCAATGACAAT
1 AAAATGCAATGACAAT
73105433 GTATATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:73115029 original size:30 final size:30
Alignment explanation
Indices: 73114995--73115055 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
73114985 TCCTTAACTC
73114995 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
73115025 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
73115055 A
1 A
73115056 GGCTCAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:73119601 original size:93 final size:93
Alignment explanation
Indices: 73119489--73119660 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
73119479 CCCCCATAAG
*
73119489 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
73119553 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
73119582 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73119647 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73119661 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73119655 original size:46 final size:46
Alignment explanation
Indices: 73119482--73119657 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
73119472 ATGTAACCCC
* *
73119482 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
73119528 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
73119578 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73119621 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73119658 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73127009 original size:45 final size:46
Alignment explanation
Indices: 73126945--73127119 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
73126935 TGTAACCCGC
*
73126945 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
73126990 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* *
73127040 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
73127083 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73127120 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 36 0.32
46 29 0.26
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:73127110 original size:93 final size:92
Alignment explanation
Indices: 73126952--73127122 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
73126942 CGCCCATAAG
*
73126952 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73127017 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
73127044 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73127109 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
73127123 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 28 0.37
93 48 0.63
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73129569 original size:20 final size:20
Alignment explanation
Indices: 73129546--73129583 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
73129536 CACTCTGTAA
73129546 ATATTTATAAAAATATTTAC
1 ATATTTATAAAAATATTTAC
73129566 ATATTTATAAAAATATTT
1 ATATTTATAAAAATATTT
73129584 CTGGCTCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
ATATTTATAAAAATATTTAC
Found at i:73134347 original size:17 final size:17
Alignment explanation
Indices: 73134316--73134363 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
73134306 TTGGATTGAG
73134316 AAAATT-ATTTAATTAA
1 AAAATTAATTTAATTAA
*
73134332 AAAATTAATTTGATTAA
1 AAAATTAATTTAATTAA
**
73134349 TTAATTAATTATAAT
1 AAAATTAATT-TAAT
73134364 AATTGGTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
16 6 0.23
17 17 0.65
18 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
AAAATTAATTTAATTAA
Found at i:73141984 original size:10 final size:10
Alignment explanation
Indices: 73141971--73142018 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
73141961 TTATTTTCAT
73141971 TTATCTTTAA
1 TTATCTTTAA
73141981 TTATCTTTAA
1 TTATCTTTAA
*
73141991 TTATCTTTAT
1 TTATCTTTAA
*
73142001 TTAT-TTGTAT
1 TTATCTT-TAA
73142011 TTATCTTT
1 TTATCTTT
73142019 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:73148617 original size:68 final size:69
Alignment explanation
Indices: 73148545--73148692 Score: 162
Period size: 67 Copynumber: 2.2 Consensus size: 69
73148535 CATCATGTGT
* * *
73148545 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGAGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTACAAGACA-TAT-ATGTAGCTAGGTCGCATGAGTGGATACAAGTGAAGGACACC
73148607 ATGTAG
64 ATGTAG
* ** * * *
73148613 ACAAGAGAGCT--ATGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGAGTGGATACAAGTGAAGGACACCAT
73148676 GTAG
66 GTAG
73148680 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
73148693 GAGATAAACT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 20 0.30
65 7 0.11
66 5 0.08
67 23 0.35
68 11 0.17
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (69 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGAGTGGATACAAGTGAAGGACACCAT
GTAG
Found at i:73148649 original size:64 final size:64
Alignment explanation
Indices: 73148569--73148752 Score: 176
Period size: 67 Copynumber: 2.8 Consensus size: 64
73148559 AGACATTATG
* * *
73148569 ATGTAGCTAGGTCGCATGAGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGAGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
73148633 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGAGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73148698 AA
63 AA
* * * * *
73148700 ACT-T-GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGAGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
73148753 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGAGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73151960 original size:7 final size:6
Alignment explanation
Indices: 73151940--73151981 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
73151930 TTTATTTCTC
*
73151940 TTTATT TTTATT TTTATT TTT-TAT TTTATT TTAATT ATTTAT
1 TTTATT TTTATT TTTATT TTTAT-T TTTATT TTTATT -TTTAT
73151982 ATCTTAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
5 1 0.03
6 25 0.81
7 5 0.16
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:73151968 original size:18 final size:18
Alignment explanation
Indices: 73151940--73152019 Score: 64
Period size: 15 Copynumber: 4.7 Consensus size: 18
73151930 TTTATTTCTC
* *
73151940 TTTATTTTTATTTTTATTT
1 TTTA-TTTTATTTTAATTA
73151959 TTTATTTTATTTTAATTA
1 TTTATTTTATTTTAATTA
*
73151977 TTTA---TATCTTAATTA
1 TTTATTTTATTTTAATTA
* *
73151992 TTTA--TTA-CTTAATTT
1 TTTATTTTATTTTAATTA
73152007 TTTATTTTATTTT
1 TTTATTTTATTTT
73152020 TGATATTAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
15 25 0.48
16 2 0.04
17 3 0.06
18 18 0.35
19 4 0.08
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATTTTATTTTAATTA
Found at i:73152018 original size:12 final size:12
Alignment explanation
Indices: 73151940--73152020 Score: 60
Period size: 12 Copynumber: 6.8 Consensus size: 12
73151930 TTTATTTCTC
73151940 TTTA-TTTTTATT
1 TTTATTTTTTA-T
73151952 TTTATTTTTTAT
1 TTTATTTTTTAT
73151964 TTTATTTTAATTA-
1 TTTATTTT--TTAT
* *
73151977 TTTATATCTTA-
1 TTTATTTTTTAT
* * *
73151988 ATTATTTATTAC
1 TTTATTTTTTAT
*
73152000 TTAATTTTTTAT
1 TTTATTTTTTAT
73152012 TTTATTTTT
1 TTTATTTTT
73152021 GATATTAATA
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
11 11 0.20
12 29 0.53
13 12 0.22
14 3 0.05
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTATTTTTTAT
Found at i:73154764 original size:96 final size:97
Alignment explanation
Indices: 73154596--73154777 Score: 303
Period size: 96 Copynumber: 1.9 Consensus size: 97
73154586 TTTAAGAATA
* * *
73154596 TGTTGGGCTGAGTAACCAGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCAAT
1 TGTTGGGCTAAGTAACCAGGGTGAGGTGCTTAGCTATCATCTCTCTTCGCGTCAAAAGGTTCAAT
*
73154661 ATGTTCTTAAG-AAAAATAAAAATTAGGAGTG
66 ATATTCTTAAGTAAAAATAAAAATTAGGAGTG
*
73154692 TGTTGGGCTAAGTAACCGGGGTGAGGTGCTTAGCTATCATCTCTCTTCGCGTCAAAAGGTTCAAT
1 TGTTGGGCTAAGTAACCAGGGTGAGGTGCTTAGCTATCATCTCTCTTCGCGTCAAAAGGTTCAAT
*
73154757 ATATTCTTAAGTAAAACTAAA
66 ATATTCTTAAGTAAAAATAAA
73154778 TAAATAAATA
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
96 71 0.90
97 8 0.10
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (97 bp):
TGTTGGGCTAAGTAACCAGGGTGAGGTGCTTAGCTATCATCTCTCTTCGCGTCAAAAGGTTCAAT
ATATTCTTAAGTAAAAATAAAAATTAGGAGTG
Found at i:73155396 original size:14 final size:13
Alignment explanation
Indices: 73155377--73155414 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
73155367 ATTTAATGTT
73155377 TAATTATATTAGGA
1 TAATTAT-TTAGGA
*
73155391 TAATTATTAAGGA
1 TAATTATTTAGGA
73155404 TAATTATTTAG
1 TAATTATTTAG
73155415 ATTTAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (13 bp):
TAATTATTTAGGA
Found at i:73155443 original size:10 final size:10
Alignment explanation
Indices: 73155428--73155477 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
73155418 TAATTTTAGG
73155428 ATTTAT-TTT
1 ATTTATCTTT
73155437 CATTTATCTTT
1 -ATTTATCTTT
*
73155448 AATTATCTTT
1 ATTTATCTTT
73155458 ATTTAT-TTGT
1 ATTTATCTT-T
73155468 ATTTATCTTT
1 ATTTATCTTT
73155478 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:73156273 original size:41 final size:43
Alignment explanation
Indices: 73156219--73156298 Score: 119
Period size: 41 Copynumber: 1.9 Consensus size: 43
73156209 TAAAATTCCA
*
73156219 ATCAAAACTTTTAATTCAATTTTTA-TTT-TATTTTTTCCAAG
1 ATCAAAACGTTTAATTCAATTTTTATTTTGTATTTTTTCCAAG
**
73156260 ATCAAAACGTTTAATTCTGTTTTTATTTTGTATTTTTTC
1 ATCAAAACGTTTAATTCAATTTTTATTTTGTATTTTTTC
73156299 AAGTACGCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
41 22 0.65
42 3 0.09
43 9 0.26
ACGTcount: A:0.28, C:0.11, G:0.05, T:0.56
Consensus pattern (43 bp):
ATCAAAACGTTTAATTCAATTTTTATTTTGTATTTTTTCCAAG
Found at i:73156807 original size:30 final size:30
Alignment explanation
Indices: 73156773--73156834 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
73156763 GTGCTAAAGA
73156773 TAATTAAATGGGTACAAATTAACCAATAAG
1 TAATTAAATGGGTACAAATTAACCAATAAG
73156803 TAATTAAATGGGTACAAATTAACCAATAAG
1 TAATTAAATGGGTACAAATTAACCAATAAG
73156833 TA
1 TA
73156835 GGGAGAAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.50, C:0.10, G:0.13, T:0.27
Consensus pattern (30 bp):
TAATTAAATGGGTACAAATTAACCAATAAG
Found at i:73160793 original size:18 final size:21
Alignment explanation
Indices: 73160770--73160813 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
73160760 TTGATTACAC
73160770 TATGAA-ATT-ATGAA-AATG
1 TATGAAGATTGATGAACAATG
73160788 TATGAAGTATTGATGAACAATG
1 TATGAAG-ATTGATGAACAATG
73160810 TATG
1 TATG
73160814 TATAGCCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.27
20 3 0.14
21 5 0.23
22 8 0.36
ACGTcount: A:0.43, C:0.02, G:0.20, T:0.34
Consensus pattern (21 bp):
TATGAAGATTGATGAACAATG
Found at i:73163960 original size:20 final size:20
Alignment explanation
Indices: 73163937--73164001 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
73163927 TGCCCCTATT
73163937 TGCACTTCAGTACCCCTGAA
1 TGCACTTCAGTACCCCTGAA
* * **
73163957 TGCACAT-ATGTGCCCCTGTT
1 TGCACTTCA-GTACCCCTGAA
* *
73163977 TGTACTTCAGTACCCTTGAA
1 TGCACTTCAGTACCCCTGAA
73163997 TGCAC
1 TGCAC
73164002 ATACGTGCCC
Statistics
Matches: 32, Mismatches: 11, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.31
Consensus pattern (20 bp):
TGCACTTCAGTACCCCTGAA
Found at i:73164085 original size:76 final size:79
Alignment explanation
Indices: 73163910--73164163 Score: 266
Period size: 76 Copynumber: 3.2 Consensus size: 79
73163900 AAGGAAATGT
* * * *
73163910 CCCTGAATGCACATACATGCCCCTATTTGCAC-TTCAGTACCCCTGAATGCACATATGTGCCCCT
1 CCCTGAATGCACATACGTGCCCCTGTTTGTACTTTGA-TACCCCTGAATGCACA-ATGTGCCCCT
* **
73163974 GTTTGTACTTCAGTAC
64 ATTTGTACACCAGTAC
*
73163990 CCTTGAATGCACATACGTGCCCCTGTTTGTACTTTGATACCCCTGAATGCAC-AT-TG-CCCTAT
1 CCCTGAATGCACATACGTGCCCCTGTTTGTACTTTGATACCCCTGAATGCACAATGTGCCCCTAT
73164052 TTGTACACCAGTAC
66 TTGTACACCAGTAC
* * * * * *
73164066 CCCTGAATGCACATACGTGCCCCTGATTGTACTTTGATGCCCCCCTAAATGCACATACGTACCCT
1 CCCTGAATGCACATACGTGCCCCTGTTTGTACTTTGAT--ACCCCTGAATGCACA-ATGTGCCCC
* **
73164131 TGTTTGTACTTCAGTAC
63 TATTTGTACACCAGTAC
73164148 CCC-GAATTGCACATAC
1 CCCTGAA-TGCACATAC
73164164 ATGCTCTTGT
Statistics
Matches: 148, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
76 53 0.36
77 2 0.01
78 14 0.09
80 44 0.30
81 7 0.05
82 28 0.19
ACGTcount: A:0.23, C:0.32, G:0.15, T:0.30
Consensus pattern (79 bp):
CCCTGAATGCACATACGTGCCCCTGTTTGTACTTTGATACCCCTGAATGCACAATGTGCCCCTAT
TTGTACACCAGTAC
Found at i:73164174 original size:40 final size:40
Alignment explanation
Indices: 73163910--73164163 Score: 286
Period size: 40 Copynumber: 6.4 Consensus size: 40
73163900 AAGGAAATGT
* * *
73163910 CCCTGAATGCACATACATGCCCCTATTTGCACTTCAGTAC
1 CCCTGAATGCACATACGTGCCCCTGTTTGTACTTCAGTAC
*
73163950 CCCTGAATGCACATATGTGCCCCTGTTTGTACTTCAGTAC
1 CCCTGAATGCACATACGTGCCCCTGTTTGTACTTCAGTAC
* *
73163990 CCTTGAATGCACATACGTGCCCCTGTTTGTACTT-TGATAC
1 CCCTGAATGCACATACGTGCCCCTGTTTGTACTTCAG-TAC
* **
73164030 CCCTGAATGCACAT---TG-CCCTATTTGTACACCAGTAC
1 CCCTGAATGCACATACGTGCCCCTGTTTGTACTTCAGTAC
* * **
73164066 CCCTGAATGCACATACGTGCCCCTGATTGTACTTTGATGCCC
1 CCCTGAATGCACATACGTGCCCCTGTTTGTAC-TTCA-GTAC
* * *
73164108 CCCTAAATGCACATACGTACCCTTGTTTGTACTTCAGTAC
1 CCCTGAATGCACATACGTGCCCCTGTTTGTACTTCAGTAC
73164148 CCC-GAATTGCACATAC
1 CCCTGAA-TGCACATAC
73164164 ATGCTCTTGT
Statistics
Matches: 178, Mismatches: 27, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
36 28 0.16
37 3 0.02
39 5 0.03
40 108 0.61
41 4 0.02
42 30 0.17
ACGTcount: A:0.23, C:0.32, G:0.15, T:0.30
Consensus pattern (40 bp):
CCCTGAATGCACATACGTGCCCCTGTTTGTACTTCAGTAC
Found at i:73169332 original size:47 final size:47
Alignment explanation
Indices: 73169269--73169629 Score: 532
Period size: 47 Copynumber: 7.6 Consensus size: 47
73169259 CCCTTCGGGA
* * *
73169269 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
73169316 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
73169363 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTC-GC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
73169409 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
73169456 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
73169505 CTTATCACATATATACA-TTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
73169551 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
73169598 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
73169630 TCAAATATAC
Statistics
Matches: 291, Mismatches: 15, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
46 86 0.30
47 139 0.48
49 65 0.22
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:73169445 original size:93 final size:93
Alignment explanation
Indices: 73169269--73169629 Score: 528
Period size: 93 Copynumber: 3.8 Consensus size: 93
73169259 CCCTTCGGGA
* * *
73169269 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-
73169334 TTTCACATTCATCACATTGGCCATTCGGC
65 TTTCACATTCATCACATTGGCCATTCGGC
* * * *
73169363 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTC-GCCTTATCACACATACACA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
73169426 TGTTCACATTCATCACATTGGCCATTCGGC
65 T-TTCACATTCATCACATTGGCCATTCGGC
73169456 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* * *
73169521 ATTTCACATTCATCACATCGGCTATTAGGC
64 ATTTCACATTCATCACATTGGCCATTCGGC
* *
73169551 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
73169616 ACTTTCACATTCAT
64 A-TTTCACATTCAT
73169630 TCAAATATAC
Statistics
Matches: 242, Mismatches: 16, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
92 1 0.00
93 98 0.40
94 37 0.15
95 75 0.31
96 31 0.13
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (93 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAT
TTCACATTCATCACATTGGCCATTCGGC
Found at i:73169553 original size:142 final size:142
Alignment explanation
Indices: 73169269--73169629 Score: 550
Period size: 142 Copynumber: 2.6 Consensus size: 142
73169259 CCCTTCGGGA
** * * *
73169269 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
1 CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
* *
73169332 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACA
*
73169397 TTGGCCATTCGC
131 TCGGCCATTCGC
73169409 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACACATACACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
73169473 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAT-TTCACATTCATCAC
65 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCAC
* *
73169537 ATCGGCTATTAGGC
130 ATCGGCCATT-CGC
* * * *
73169551 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
73169616 ACTTTCACATTCAT
66 ACTTTCACATTCAT
73169630 TCAAATATAC
Statistics
Matches: 202, Mismatches: 14, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
139 1 0.00
140 48 0.24
141 22 0.11
142 130 0.64
143 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (142 bp):
CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACA
TCGGCCATTCGC
Found at i:73172869 original size:40 final size:40
Alignment explanation
Indices: 73172837--73173220 Score: 545
Period size: 40 Copynumber: 9.6 Consensus size: 40
73172827 CCAGCATGAT
* * * *
73172837 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
*
73172877 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *
73172917 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* * *
73172957 TGCTCTTTGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *
73172997 TGCTCTTCGGAACTTAGTCCGGATATATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
*
73173037 TGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
73173077 TGCTCTTCGGAACTTA-CTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGC-CCGGATATATCACTAGCACGAA
* * * * *
73173117 TGCTCTTCGGGACTTAGCCCAGACACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* * *
73173157 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *
73173197 TGCTTTTCGGGACTTAGCCCGGAT
1 TGCTCTTCGGAACTTAGCCCGGAT
73173221 CATCGTCGAG
Statistics
Matches: 314, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
40 313 1.00
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
Found at i:73173719 original size:39 final size:40
Alignment explanation
Indices: 73173594--73173817 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
73173584 GCTACTCGTT
* *
73173594 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
73173634 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
73173674 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
73173713 CAAATGCCTTTGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
73173752 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
73173793 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73173818 CATCATTCGA
Statistics
Matches: 160, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 70 0.44
40 75 0.47
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:73173777 original size:118 final size:120
Alignment explanation
Indices: 73173594--73173817 Score: 287
Period size: 118 Copynumber: 1.9 Consensus size: 120
73173584 GCTACTCGTT
*
73173594 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
73173659 ATTTAGTAACTCA-CACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTCAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * * **
73173713 CAAATGCCTTTGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
73173775 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTCAGCACAAAGCCTTCGGGACTTAGCCCGGA
73173818 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
117 4 0.04
118 60 0.67
119 26 0.29
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTCAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:73176154 original size:22 final size:22
Alignment explanation
Indices: 73176126--73176247 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
73176116 TTCCACATCC
73176126 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
73176148 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
73176172 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
73176195 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
73176219 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
73176242 ATCACA
1 ATCACA
73176248 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:73176161 original size:47 final size:47
Alignment explanation
Indices: 73176098--73176460 Score: 516
Period size: 47 Copynumber: 7.6 Consensus size: 47
73176088 CCCTTCGGGA
* * *
73176098 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
73176145 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
73176192 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
73176239 CTTATCACACATACACA-TGTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
73176286 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
73176335 C-TATTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
73176382 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
73176429 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
73176461 TCAAATATAC
Statistics
Matches: 289, Mismatches: 19, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
46 1 0.00
47 223 0.77
48 4 0.01
49 60 0.21
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:73176358 original size:143 final size:143
Alignment explanation
Indices: 73176114--73176460 Score: 515
Period size: 143 Copynumber: 2.4 Consensus size: 143
73176104 ACATTTATAC
* *
73176114 ACTTCCACATCCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCA
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
* * * *
73176177 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
66 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATCGGCCATTAGGCCTT
*
73176242 ATCACACATACAC
131 ATCACACATACAA
*
73176255 A-TGTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATATACACTTTCACATTCATC
1 ACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATC
*
73176319 ACATTGGCCATTCGGCC-TATTCACATATATACACT-TTCACATTCATCACATCGGCTATTAGGC
65 ACATTGGCCATTCGGCCTTA-TCACATATATACA-TGTTCACATTCATCACATCGGCCATTAGGC
* *
73176382 CTTATCACATATATAA
128 CTTATCACACATACAA
* *
73176398 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
1 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCAT
73176461 TCAAATATAC
Statistics
Matches: 186, Mismatches: 14, Indels: 10
0.89 0.07 0.05
Matches are distributed among these distances:
140 1 0.01
141 34 0.18
142 2 0.01
143 147 0.79
144 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (143 bp):
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATCGGCCATTAGGCCTT
ATCACACATACAA
Found at i:73179250 original size:48 final size:48
Alignment explanation
Indices: 73179179--73179354 Score: 178
Period size: 48 Copynumber: 3.7 Consensus size: 48
73179169 ATGTGTGTTG
* *
73179179 GTGTAAGACCATGTCTGGGACATGGAATCGGCCACATTAAAAGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTAAGAGAGCTA
* * *
73179227 GTGTAAGACCATGTTTGGGACATGGCAT---CCGCATTGAGACGAGACCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-A-A-GAGAGCTA
* * * ** * * *
73179275 GTGTAAGACCATGTTTGGGACATGGCATCAGCCTCAACATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTAAGAGAGCTA
*
73179323 GTGTAAGACCATGTCTAGGACATGGCATCGGC
1 GTGTAAGACCATGTCTGGGACATGGCATCGGC
73179355 AATTTACCCT
Statistics
Matches: 107, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 6 0.06
46 1 0.01
47 1 0.01
48 94 0.88
50 1 0.01
51 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTAAGAGAGCTA
Found at i:73187148 original size:39 final size:33
Alignment explanation
Indices: 73187068--73187144 Score: 145
Period size: 33 Copynumber: 2.3 Consensus size: 33
73187058 TGCATTTTGC
*
73187068 ACTGTACTGATACTGAATAGGGCTTTGGCCCAG
1 ACTGTGCTGATACTGAATAGGGCTTTGGCCCAG
73187101 ACTGTGCTGATACTGAATAGGGCTTTGGCCCAG
1 ACTGTGCTGATACTGAATAGGGCTTTGGCCCAG
73187134 ACTGTGCTGAT
1 ACTGTGCTGAT
73187145 GCTGTGTTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (33 bp):
ACTGTGCTGATACTGAATAGGGCTTTGGCCCAG
Found at i:73190513 original size:40 final size:40
Alignment explanation
Indices: 73190469--73190544 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
73190459 ACTATGTTTG
* *
73190469 GCACTTATTGTGCG-TTTCAAAATAGCTTCGGCTATAAATA
1 GCACTTAGTGTGCGAATT-AAAATAGCTTCGGCTATAAATA
**
73190509 GCACTTAGTGTGCGAATTGGAATAGCTTCGGCTATA
1 GCACTTAGTGTGCGAATTAAAATAGCTTCGGCTATA
73190545 TGAGGCACTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 29 0.94
41 2 0.06
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTGCGAATTAAAATAGCTTCGGCTATAAATA
Found at i:73194569 original size:16 final size:17
Alignment explanation
Indices: 73194548--73194586 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
73194538 CTGAAAAATA
*
73194548 TTTTTTATTGTTTTCT-
1 TTTTTTATTATTTTCTC
*
73194564 TTTTTTCTTATTTTCTC
1 TTTTTTATTATTTTCTC
73194581 TTTTTT
1 TTTTTT
73194587 TTGAACTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.05, C:0.10, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTTTATTATTTTCTC
Found at i:73201801 original size:47 final size:47
Alignment explanation
Indices: 73201750--73202403 Score: 1049
Period size: 47 Copynumber: 13.7 Consensus size: 47
73201740 TTAGGATTCT
* *
73201750 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
73201797 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
73201844 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
73201891 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
73201940 ATGTGATGAGTGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
73201987 ATGTGATGACTGTTAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
73202034 ATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
73202083 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
73202132 ATGTGATGAGTGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
73202181 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
73202228 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
73202275 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
73202322 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
73202369 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73202404 TCCCGAAGGG
Statistics
Matches: 577, Mismatches: 25, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 389 0.67
49 187 0.32
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:73201929 original size:143 final size:141
Alignment explanation
Indices: 73201750--73202403 Score: 1049
Period size: 143 Copynumber: 4.6 Consensus size: 141
73201740 TTAGGATTCT
* *
73201750 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
73201814 GTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73201879 GCCTAATGGCCG
130 GCCTAATGGCCG
*
73201891 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAGTGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
73201956 AGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGACTGTTAAAGTGTATATATGTGATAA
64 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
73202021 GGCCTAATGGCCG
129 GGCCTAATGGCCG
*
73202034 ATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
73202099 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAGTGTGAAAGTGTATATATATGTG
64 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
73202164 ATAAGGCCTAATGGCCG
125 ATAAGGCCTAATGGCCG
*
73202181 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
73202246 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* *
73202311 CCGAATGGCCA
131 CCTAATGGCCG
* * * * * *
73202322 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
73202387 TGTATAAATGTGATAAG
66 TGTATATATGTGATAAG
73202404 TCCCGAAGGG
Statistics
Matches: 481, Mismatches: 25, Indels: 14
0.93 0.05 0.03
Matches are distributed among these distances:
140 1 0.00
141 116 0.24
143 228 0.47
145 89 0.19
147 47 0.10
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (141 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCCG
Found at i:73203700 original size:68 final size:65
Alignment explanation
Indices: 73203494--73203715 Score: 209
Period size: 68 Copynumber: 3.4 Consensus size: 65
73203484 CATAATTTTG
* * *
73203494 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTGACCTAGTTA-CTTTA-TCTCGTA
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTCGTA
** * * * * * * ** * *
73203557 GCTCTCTTGTTTACATGATGTCCTTCACCTGGAACCATACATGCAACCTAGCTACATCTA-TCTC
1 GCTCTCTTGTACACATG--GT-GTACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTC
73203621 GTA
63 GTA
73203624 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTC-T-AT-TCT
73203688 CGTA
62 CGTA
*
73203692 GCTCTCTTGTACACATGGTATACA
1 GCTCTCTTGTACACATGGTGTACA
73203716 TCCCGTATTA
Statistics
Matches: 122, Mismatches: 27, Indels: 15
0.74 0.16 0.09
Matches are distributed among these distances:
63 15 0.12
64 26 0.21
65 5 0.04
66 22 0.18
67 25 0.20
68 28 0.23
69 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTCGTA
Found at i:73203737 original size:68 final size:68
Alignment explanation
Indices: 73203617--73203743 Score: 168
Period size: 68 Copynumber: 1.9 Consensus size: 68
73203607 GCTACATCTA
* * *
73203617 TCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATA
1 TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCGACCTAGCTACCTCATA
73203682 ATG
66 ATG
* * *
73203685 TCTCGTAGCTCTCTTGTAC-ACATGGTATACATC-CCGTATTACACATGTGACCTAGCTAC
1 TCTCGTAGCTCTCTTGT-CTACATGGTATACA-CACAGTATCACACATGCGACCTAGCTAC
73203744 ATACCATCTA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
68 49 0.96
69 2 0.04
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCGACCTAGCTACCTCATA
ATG
Found at i:73204242 original size:30 final size:30
Alignment explanation
Indices: 73204208--73204268 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
73204198 TCCTTAACTC
*
73204208 AAACTTTGGGAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * *
73204238 AAACTTTTGCAAATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
73204268 A
1 A
73204269 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:73207225 original size:40 final size:40
Alignment explanation
Indices: 73207165--73207370 Score: 285
Period size: 40 Copynumber: 5.2 Consensus size: 40
73207155 GGACTAAGAT
73207165 CCGAAGGCATTTGTGCTAGTGTCTATATCCGGGCTAATTC
1 CCGAAGGCATTTGTGCTAGTGTCTATATCCGGGCTAATTC
* *
73207205 CCGACGGCATTTGTGCTAGTGACTATATCCGGGCTAATTC
1 CCGAAGGCATTTGTGCTAGTGTCTATATCCGGGCTAATTC
* *
73207245 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGTCTATATCCGGGCTAATTC
*
73207285 CCGAAGGCATTTGTGCGAGT-TGCTATATCCGGGCT-ATGTC
1 CCGAAGGCATTTGTGCTAGTGT-CTATATCCGGGCTAAT-TC
* * *
73207325 CCGAAGGCATTTGTGCGAGT-TGCTATATCC-GACTAAATC
1 CCGAAGGCATTTGTGCTAGTGT-CTATATCCGGGCTAATTC
73207364 CCGAAGG
1 CCGAAGG
73207371 TACTTGGGTT
Statistics
Matches: 154, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 13 0.08
40 141 0.92
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGTCTATATCCGGGCTAATTC
Found at i:73215265 original size:40 final size:40
Alignment explanation
Indices: 73215210--73215415 Score: 310
Period size: 40 Copynumber: 5.2 Consensus size: 40
73215200 GGACTAAGAT
*
73215210 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAATTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
73215250 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAATTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
73215290 CCGAAGGCATTTGTGCTAGTGACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
**
73215330 CCGAAGGCATTTGTGCGGGTTG-CTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
* *
73215370 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
73215409 CCGAAGG
1 CCGAAGG
73215416 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 15 0.09
40 141 0.89
41 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:73218373 original size:65 final size:65
Alignment explanation
Indices: 73218269--73218425 Score: 242
Period size: 65 Copynumber: 2.4 Consensus size: 65
73218259 TGAGTTCAAG
*
73218269 TCAACTATCATGGGCATTATACATGCAATACGCGCTAGTTAGTCGCACAAGTTACACTATCCCCA
1 TCAACTATCATGGGCCTTATACATGCAATACGCGCTAGTTAGTCGCACAAGTTACACTATCCCCA
* * * *
73218334 TCAACAATCATGGGCCTTATACATGCTATACGCGCTAGTTAGTCGCATAAGTTACACTATTCCCA
1 TCAACTATCATGGGCCTTATACATGCAATACGCGCTAGTTAGTCGCACAAGTTACACTATCCCCA
** *
73218399 TCAACTGCCATAGGCCTTATACATGCA
1 TCAACTATCATGGGCCTTATACATGCA
73218426 GTAAGCGCCA
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 82 1.00
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (65 bp):
TCAACTATCATGGGCCTTATACATGCAATACGCGCTAGTTAGTCGCACAAGTTACACTATCCCCA
Found at i:73226599 original size:20 final size:20
Alignment explanation
Indices: 73226574--73226622 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
73226564 AAGCTTATGC
73226574 TAAGTAAATGAAATGGAAAG
1 TAAGTAAATGAAATGGAAAG
* *
73226594 TAAGTAAATGGAATGGTAAG
1 TAAGTAAATGAAATGGAAAG
73226614 TAAGTAAAT
1 TAAGTAAAT
73226623 AGAGTGGTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24
Consensus pattern (20 bp):
TAAGTAAATGAAATGGAAAG
Found at i:73226604 original size:15 final size:16
Alignment explanation
Indices: 73226584--73226616 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
73226574 TAAGTAAATG
73226584 AAATGGAA-AGTAAGT
1 AAATGGAATAGTAAGT
*
73226599 AAATGGAATGGTAAGT
1 AAATGGAATAGTAAGT
73226615 AA
1 AA
73226617 GTAAATAGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.52, C:0.00, G:0.27, T:0.21
Consensus pattern (16 bp):
AAATGGAATAGTAAGT
Found at i:73226630 original size:20 final size:20
Alignment explanation
Indices: 73226574--73226630 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
73226564 AAGCTTATGC
*
73226574 TAAGTAAAT-GAAATGGAAAG
1 TAAGTAAATAG-AATGGTAAG
*
73226594 TAAGTAAATGGAATGGTAAG
1 TAAGTAAATAGAATGGTAAG
*
73226614 TAAGTAAATAGAGTGGT
1 TAAGTAAATAGAATGGT
73226631 TCATAGTCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 32 0.97
21 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.28, T:0.25
Consensus pattern (20 bp):
TAAGTAAATAGAATGGTAAG
Found at i:73242035 original size:28 final size:28
Alignment explanation
Indices: 73241969--73242096 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
73241959 CATGAGATTG
* * **
73241969 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
73241998 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73242026 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
*
73242055 GGACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73242083 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
73242097 GACTTACTAT
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 44 0.51
29 43 0.49
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73242061 original size:57 final size:57
Alignment explanation
Indices: 73241969--73242096 Score: 177
Period size: 57 Copynumber: 2.2 Consensus size: 57
73241959 CATGAGATTG
*
73241969 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * * *
73242026 GCACTAAGTGTGCGAGTTTGATTATGTA-AGGACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
73242083 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
73242097 GACTTACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Done.