Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 223 of 352
Found at i:73247398 original size:78 final size:81
Alignment explanation
Indices: 73247264--73247446 Score: 232
Period size: 78 Copynumber: 2.3 Consensus size: 81
73247254 TGAATGATGT
*
73247264 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
73247328 GTGCGAGATACTA-AT
66 GTGCGAGATACTATAA
* * * * **
73247343 TCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
*
73247405 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
73247422 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
73247447 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 1 0.01
78 49 0.55
79 25 0.28
80 14 0.16
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATAA
Found at i:73247408 original size:40 final size:40
Alignment explanation
Indices: 73247263--73247446 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
73247253 TTGAATGATG
* * * *
73247263 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
73247303 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73247342 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73247381 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
73247422 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73247447 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 23 0.18
39 21 0.17
40 71 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73247464 original size:80 final size:77
Alignment explanation
Indices: 73247316--73247479 Score: 204
Period size: 79 Copynumber: 2.1 Consensus size: 77
73247306 GGACTAAGAT
** **
73247316 CCGAAGGCATTTGTGCGAGATACTAATTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
*
73247381 TCCGGGTTAAGTC
66 TCC-GGTTAAATC
* *
73247394 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCATTTGTGCGAGATACTA-AACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CT
* *
73247458 ATATCCGGTTAAATT
63 AAATCCGGTTAAATC
73247473 CCGAAGG
1 CCGAAGG
73247480 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 24 0.32
79 25 0.34
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGTTAAATC
Found at i:73255302 original size:39 final size:40
Alignment explanation
Indices: 73255202--73255379 Score: 202
Period size: 40 Copynumber: 4.5 Consensus size: 40
73255192 AATGATGTCC
* * * *
73255202 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCT
* * * *
73255242 GGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAATTCT
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCT
73255282 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCT
* *
73255321 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCT
*
73255361 GGGCTATGTCCCGAAGGCA
1 GGGCTAAGTCCCGAAGGCA
73255380 CTTGAACGAG
Statistics
Matches: 117, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.29
40 73 0.62
41 10 0.09
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCT
Found at i:73255337 original size:79 final size:80
Alignment explanation
Indices: 73255202--73255378 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
73255192 AATGATGTCC
* *
73255202 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCTGGACTAAGATCTGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCTGGACTAAGATCCGAAGGCATTTGTG
73255267 CGAGATACTAATTCT
66 CGAGATACTAATTCT
* * * **
73255282 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCTGGACTAAGAT-CCGAAGGCATTTG
* * *
73255344 TGCGAGTTACT-ATAACC
64 TGCGAGATACTAAT-TCT
*
73255361 GGGCTATGTCCCGAAGGC
1 GGGCTAAGTCCCGAAGGC
73255379 ACTTGAACGA
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.04
79 55 0.67
80 24 0.29
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCTGGACTAAGATCCGAAGGCATTTGTG
CGAGATACTAATTCT
Found at i:73255405 original size:79 final size:79
Alignment explanation
Indices: 73255254--73255416 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
73255244 ACTAAGATCT
* * * **
73255254 GAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCACTTGAACGAGTTACTAAAT
* *
73255319 CTGGGTTAAGTCCC
66 CTCGGTTAAATCCC
* *
73255333 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCACTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCACTTGAACGAGTTA-CTA
* *
73255396 TATC-CGGTTAAATTCC
63 AATCTCGGTTAAATCCC
73255412 GAAGG
1 GAAGG
73255417 TACGTGATTT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.64
80 23 0.33
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCACTTGAACGAGTTACTAAAT
CTCGGTTAAATCCC
Found at i:73261476 original size:17 final size:17
Alignment explanation
Indices: 73261454--73261493 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
73261444 AGATAATCGA
73261454 AAGCTCGTTC-AGTTGAG
1 AAGCTCGTTCGA-TTGAG
73261471 AAGCTCGTTCGATTGAG
1 AAGCTCGTTCGATTGAG
73261488 AAGCTC
1 AAGCTC
73261494 ATTGGAGACC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 21 0.95
18 1 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (17 bp):
AAGCTCGTTCGATTGAG
Found at i:73262511 original size:37 final size:37
Alignment explanation
Indices: 73262461--73262536 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
73262451 TTTGGAAATG
*
73262461 AATGTATTCAAGTTATGCTTTTACGGTAATGCTTTGT
1 AATGTATTCAAGTTATGCTTTTACGGTAAAGCTTTGT
73262498 AATGTATTCAAGTTATGCTTTTACGGTAAAGCTTTGT
1 AATGTATTCAAGTTATGCTTTTACGGTAAAGCTTTGT
73262535 AA
1 AA
73262537 CCCAATTTAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.43
Consensus pattern (37 bp):
AATGTATTCAAGTTATGCTTTTACGGTAAAGCTTTGT
Found at i:73262835 original size:17 final size:17
Alignment explanation
Indices: 73262813--73262879 Score: 84
Period size: 17 Copynumber: 4.0 Consensus size: 17
73262803 ATTTATCATA
*
73262813 AAAACATGTATAACAAT
1 AAAACATGTAAAACAAT
* *
73262830 AAAACATGTAACACATGT
1 AAAACATGTAAAACA-AT
73262848 AAAAC--GTAAAACAAT
1 AAAACATGTAAAACAAT
73262863 AAAACATGTAAAACAAT
1 AAAACATGTAAAACAAT
73262880 TAGGGCAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
15 6 0.14
16 7 0.17
17 23 0.55
18 6 0.14
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.19
Consensus pattern (17 bp):
AAAACATGTAAAACAAT
Found at i:73262876 original size:9 final size:9
Alignment explanation
Indices: 73262813--73262877 Score: 66
Period size: 9 Copynumber: 7.7 Consensus size: 9
73262803 ATTTATCATA
73262813 AAAACATGT
1 AAAACATGT
* *
73262822 ATAACA-AT
1 AAAACATGT
73262830 AAAACATGT
1 AAAACATGT
*
73262839 AACACATGT
1 AAAACATGT
73262848 AAAAC--GT
1 AAAACATGT
*
73262855 AAAACA-AT
1 AAAACATGT
73262863 AAAACATGT
1 AAAACATGT
73262872 AAAACA
1 AAAACA
73262878 ATTAGGGCAA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
7 7 0.16
8 13 0.29
9 25 0.56
ACGTcount: A:0.60, C:0.14, G:0.08, T:0.18
Consensus pattern (9 bp):
AAAACATGT
Found at i:73263582 original size:29 final size:31
Alignment explanation
Indices: 73263537--73263597 Score: 90
Period size: 29 Copynumber: 2.0 Consensus size: 31
73263527 TACATTAGTC
*
73263537 TTTAAGTTTGATTTTAAAGCT-AAATCAAAT
1 TTTAAGTTTGATTTTAAAACTGAAATCAAAT
*
73263567 TTTAA-TTTGATTTTAAAACTGAAATTAAAT
1 TTTAAGTTTGATTTTAAAACTGAAATCAAAT
73263597 T
1 T
73263598 GTATTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 14 0.50
30 14 0.50
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (31 bp):
TTTAAGTTTGATTTTAAAACTGAAATCAAAT
Found at i:73263922 original size:34 final size:34
Alignment explanation
Indices: 73263884--73263951 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
73263874 ATTTCAAGTC
*
73263884 AATTACTATTTATTTTCTGAATTCATTCATAATG
1 AATTACTATTCATTTTCTGAATTCATTCATAATG
73263918 AATTACTATTCATTTTCTGAATTCATTCATAATG
1 AATTACTATTCATTTTCTGAATTCATTCATAATG
73263952 TCCCTTAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.32, C:0.13, G:0.06, T:0.49
Consensus pattern (34 bp):
AATTACTATTCATTTTCTGAATTCATTCATAATG
Found at i:73263945 original size:17 final size:17
Alignment explanation
Indices: 73263895--73263947 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
73263885 ATTACTATTT
73263895 ATTTTCTGAATTCATTC
1 ATTTTCTGAATTCATTC
**
73263912 A--TAATGAATTACTATTC
1 ATTTTCTGAATT-C-ATTC
73263929 ATTTTCTGAATTCATTC
1 ATTTTCTGAATTCATTC
73263946 AT
1 AT
73263948 AATGTCCCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
15 7 0.25
16 1 0.04
17 12 0.43
18 1 0.04
19 7 0.25
ACGTcount: A:0.30, C:0.15, G:0.06, T:0.49
Consensus pattern (17 bp):
ATTTTCTGAATTCATTC
Found at i:73267942 original size:13 final size:13
Alignment explanation
Indices: 73267924--73267952 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
73267914 CACACGCTCG
73267924 TGGGTTCAAGTCC
1 TGGGTTCAAGTCC
73267937 TGGGTTCAAGTCC
1 TGGGTTCAAGTCC
73267950 TGG
1 TGG
73267953 CTTTTGAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.21, G:0.34, T:0.31
Consensus pattern (13 bp):
TGGGTTCAAGTCC
Found at i:73279768 original size:29 final size:29
Alignment explanation
Indices: 73279711--73279796 Score: 120
Period size: 29 Copynumber: 3.0 Consensus size: 29
73279701 TACTTGTATC
*
73279711 TGGCCCACTAGGCCC-AATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
*
73279739 TGGCCCATTAGGCCCAAATCACGTTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * *
73279768 TGGCCCATCAAGCCCAATTCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
73279797 GTCATACTCA
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 14 0.27
29 37 0.73
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:73280030 original size:16 final size:16
Alignment explanation
Indices: 73280009--73280051 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
73279999 ATAGTCAAAC
73280009 TTTTGGCTTTT-TGACA
1 TTTTGGCTTTTCTG-CA
73280025 TTTTGGCTTTTCTGCA
1 TTTTGGCTTTTCTGCA
*
73280041 TTTCGGCTTTT
1 TTTTGGCTTTT
73280052 GCCGATCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 23 0.92
17 2 0.08
ACGTcount: A:0.07, C:0.16, G:0.19, T:0.58
Consensus pattern (16 bp):
TTTTGGCTTTTCTGCA
Found at i:73280818 original size:4 final size:4
Alignment explanation
Indices: 73280805--73280834 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
73280795 ATATTTATAC
73280805 TAAA -AAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
73280835 TACACCTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:73284503 original size:27 final size:27
Alignment explanation
Indices: 73284473--73284650 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73284463 ATATTAAGTC
* * *
73284473 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
73284500 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
73284528 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
73284555 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
73284582 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
73284609 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
73284636 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73284651 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:73284557 original size:55 final size:54
Alignment explanation
Indices: 73284473--73284650 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
73284463 ATATTAAGTC
* * *
73284473 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
73284528 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
73284582 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
73284636 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73284651 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:73284639 original size:81 final size:82
Alignment explanation
Indices: 73284494--73284649 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
73284484 TGCTATATAA
* *
73284494 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
73284559 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
73284576 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
73284639 ACACTTAGTGC
65 ACACTTAGTGC
73284650 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:73292515 original size:27 final size:27
Alignment explanation
Indices: 73292485--73292661 Score: 203
Period size: 27 Copynumber: 6.6 Consensus size: 27
73292475 ATATTAAGTC
* * * *
73292485 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
73292512 CGCACACTTAGTGCCACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
73292539 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
** * *
73292566 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
73292593 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
73292620 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73292647 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73292662 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
27 128 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:73292567 original size:54 final size:54
Alignment explanation
Indices: 73292485--73292661 Score: 239
Period size: 54 Copynumber: 3.3 Consensus size: 54
73292475 ATATTAAGTC
* * *
73292485 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * * *
73292539 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
73292593 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
73292647 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73292662 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
53 1 0.01
54 106 0.99
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:73292596 original size:81 final size:81
Alignment explanation
Indices: 73292506--73292660 Score: 240
Period size: 81 Copynumber: 1.9 Consensus size: 81
73292496 TGCTATATAA
* *
73292506 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
73292570 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
73292587 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
73292652 ACTTAGTGC
66 ACTTAGTGC
73292661 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
80 2 0.03
81 65 0.97
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:73296031 original size:40 final size:40
Alignment explanation
Indices: 73295987--73296131 Score: 220
Period size: 40 Copynumber: 3.6 Consensus size: 40
73295977 CTCGCTTAAA
73295987 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
* *
73296027 TGCCTTCGGGACTTAGCCCGGTTATGGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
* ** *
73296067 TGCCTTCGGGACTTAGCCCAGACATAGTAACTCACACAAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC-AAT
73296108 T-CCTTCGGGACTTAGCCCGGTTAT
1 TGCCTTCGGGACTTAGCCCGGTTAT
73296132 CATCCGAATA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 90 0.97
41 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
Found at i:73296082 original size:80 final size:80
Alignment explanation
Indices: 73295984--73296131 Score: 244
Period size: 80 Copynumber: 1.9 Consensus size: 80
73295974 CTACTCGCTT
* ** *
73295984 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC-AATTGCCTTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGACTTAGCCCAGACATAGTAACTCACACAAATT-CCTTCGGGACTTAGCCCGG
73296048 TTATGGTAACTCGCAC
65 TTATGGTAACTCGCAC
73296064 AAATGCCTTCGGGACTTAGCCCAGACATAGTAACTCACACAAATTCCTTCGGGACTTAGCCCGGT
1 AAATGCCTTCGGGACTTAGCCCAGACATAGTAACTCACACAAATTCCTTCGGGACTTAGCCCGGT
73296129 TAT
66 TAT
73296132 CATCCGAATA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
80 59 0.94
81 4 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
AAATGCCTTCGGGACTTAGCCCAGACATAGTAACTCACACAAATTCCTTCGGGACTTAGCCCGGT
TATGGTAACTCGCAC
Found at i:73298230 original size:28 final size:28
Alignment explanation
Indices: 73298187--73298275 Score: 106
Period size: 28 Copynumber: 3.1 Consensus size: 28
73298177 CACATAACTA
*
73298187 TATATGGCCCACTAGGCCCAATCATATT
1 TATATGGCCCATTAGGCCCAATCATATT
* ** *
73298215 TATATGGCCCGTTAGGCCCAAAAATGTT
1 TATATGGCCCATTAGGCCCAATCATATT
* *
73298243 TATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAA-TCATATT
73298272 TATA
1 TATA
73298276 GTCATGCTCA
Statistics
Matches: 49, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 42 0.86
29 7 0.14
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATCATATT
Found at i:73298515 original size:16 final size:16
Alignment explanation
Indices: 73298494--73298530 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
73298484 AAACTTTTGA
73298494 CTTTTTGGTATTTCAG
1 CTTTTTGGTATTTCAG
*
73298510 CTTTTTGGTATTTCGG
1 CTTTTTGGTATTTCAG
73298526 CTTTT
1 CTTTT
73298531 ACTGATCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.08, C:0.14, G:0.19, T:0.59
Consensus pattern (16 bp):
CTTTTTGGTATTTCAG
Found at i:73304836 original size:12 final size:12
Alignment explanation
Indices: 73304819--73304844 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73304809 AACATCACCA
73304819 AAATAAATGTCC
1 AAATAAATGTCC
73304831 AAATAAATGTCC
1 AAATAAATGTCC
73304843 AA
1 AA
73304845 TGTCCATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (12 bp):
AAATAAATGTCC
Found at i:73318323 original size:39 final size:39
Alignment explanation
Indices: 73318224--73318323 Score: 123
Period size: 39 Copynumber: 2.6 Consensus size: 39
73318214 GAAATCCTTG
* *
73318224 TTATAATTATTGTAATTATAA-TTTACGATCGAATATTA
1 TTATAATTATTGTAATTATAATTTTACGATCAAACATTA
** *
73318262 TTATAATTATTGTAATGGTAATTTTCCTG-TCAAACATTA
1 TTATAATTATTGTAATTATAATTTTAC-GATCAAACATTA
*
73318301 TTATAATTATGGTAATTATAATT
1 TTATAATTATTGTAATTATAATT
73318324 ATTATATTTA
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
38 19 0.37
39 32 0.62
40 1 0.02
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.48
Consensus pattern (39 bp):
TTATAATTATTGTAATTATAATTTTACGATCAAACATTA
Found at i:73319940 original size:53 final size:54
Alignment explanation
Indices: 73319871--73320077 Score: 222
Period size: 54 Copynumber: 3.8 Consensus size: 54
73319861 TTCCTTTTTA
* *
73319871 AACTTACC-ATCGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAAT-GCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
73319924 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATAGG-ATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GGTATCCTTGCCTTATAG
** * * * * * *
73319978 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
73320033 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
73320078 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 26, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
53 41 0.33
54 42 0.34
55 40 0.33
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:73327379 original size:53 final size:54
Alignment explanation
Indices: 73327294--73327496 Score: 205
Period size: 53 Copynumber: 3.8 Consensus size: 54
73327284 TTCCTTTTTA
* * *
73327294 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATTCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATTCTTGCCTTATAG
* * ** *
73327347 AACTCACCATTGCCATGCCTTGGTATGGTCTTACATGGGA-TCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATTC-TTGCCTTATAG
** * * * * *
73327401 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGAT-TTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATT-CTTGCCTTATAG
* *
73327456 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTAT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAT
73327497 CCTTAAACCC
Statistics
Matches: 119, Mismatches: 25, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
52 2 0.02
53 43 0.36
54 33 0.28
55 40 0.34
56 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATTCTTGCCTTATAG
Found at i:73327869 original size:29 final size:29
Alignment explanation
Indices: 73327837--73327895 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
73327827 CTTTAACTCT
73327837 AACTTTGGAAAAATTATGATTTTTCCCTA
1 AACTTTGGAAAAATTATGATTTTTCCCTA
* * * * *
73327866 AACTTTTGCATATTTATGCTTTTTCCCTA
1 AACTTTGGAAAAATTATGATTTTTCCCTA
73327895 A
1 A
73327896 GGCTCGGAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.29, C:0.17, G:0.08, T:0.46
Consensus pattern (29 bp):
AACTTTGGAAAAATTATGATTTTTCCCTA
Found at i:73328940 original size:31 final size:31
Alignment explanation
Indices: 73328897--73328955 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
73328887 TATTTATAGA
73328897 CTTAAGATGGCCATCATCCTTAACCCTAGGT
1 CTTAAGATGGCCATCATCCTTAACCCTAGGT
*
73328928 CTTAGGATGGCCATCATCCTTAACCCTA
1 CTTAAGATGGCCATCATCCTTAACCCTA
73328956 AGTCAGCTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (31 bp):
CTTAAGATGGCCATCATCCTTAACCCTAGGT
Found at i:73331404 original size:22 final size:22
Alignment explanation
Indices: 73331379--73331431 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
73331369 ATGCTAAATA
*
73331379 TGTGATAAATGTGCTTGTGAAT
1 TGTGATAAATGTGCTCGTGAAT
73331401 TGTGATAAATGTGCTCGTGAAT
1 TGTGATAAATGTGCTCGTGAAT
73331423 TGTGATAAA
1 TGTGATAAA
73331432 GAGAACTAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.30, C:0.06, G:0.26, T:0.38
Consensus pattern (22 bp):
TGTGATAAATGTGCTCGTGAAT
Found at i:73332615 original size:20 final size:21
Alignment explanation
Indices: 73332568--73332617 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
73332558 CTTATCCCTA
*
73332568 GTATCGATACTTGTGGTAAGT
1 GTATCGATACTTGTGGAAAGT
*
73332589 TTATCGATACCTTGT-GAAAG-
1 GTATCGATA-CTTGTGGAAAGT
73332609 GTATCGATA
1 GTATCGATA
73332618 ATTTTTTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 8 0.32
21 12 0.48
22 5 0.20
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (21 bp):
GTATCGATACTTGTGGAAAGT
Found at i:73337992 original size:27 final size:27
Alignment explanation
Indices: 73337962--73338078 Score: 153
Period size: 27 Copynumber: 4.3 Consensus size: 27
73337952 TACTGAAATG
** *
73337962 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * * *
73337989 CCCTCGATTTATAGAATTAGCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
73338016 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
73338043 CCCTCAATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
73338070 CCCTCGATT
1 CCCTCGATT
73338079 GTGAAATTAC
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:73338034 original size:54 final size:54
Alignment explanation
Indices: 73337962--73338078 Score: 171
Period size: 54 Copynumber: 2.2 Consensus size: 54
73337952 TACTGAAATG
** * * * * *
73337962 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTAGCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTA
73338016 CCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTA
73338070 CCCTCGATT
1 CCCTCGATT
73338079 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.38
Consensus pattern (54 bp):
CCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTA
Found at i:73338120 original size:26 final size:24
Alignment explanation
Indices: 73338082--73338234 Score: 83
Period size: 27 Copynumber: 5.8 Consensus size: 24
73338072 CTCGATTGTG
**
73338082 AAATTACTGAAATACCCCTTAGGATA
1 AAATTACCAAAATACCCCTT-GG-TA
* *
73338108 GAATTACCAAAATATCCCCAGTTTGTA
1 AAATTACCAAAATA-CCCC--TTGGTA
*
73338135 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCC---TTGGTA
*
73338162 AAATTACCAAAATACCAC-TGGTTTA
1 AAATTACCAAAATACCCCTTGG--TA
* * *
73338187 TGAAATTATCGAAATACCCTCAATTTGTA
1 --AAATTACCAAAATACCC-C--TTGGTA
73338216 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
73338235 GATTTACAAA
Statistics
Matches: 102, Mismatches: 13, Indels: 26
0.72 0.09 0.18
Matches are distributed among these distances:
23 2 0.02
24 1 0.01
25 2 0.02
26 16 0.16
27 73 0.72
28 2 0.02
29 4 0.04
31 2 0.02
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (24 bp):
AAATTACCAAAATACCCCTTGGTA
Found at i:73338139 original size:27 final size:26
Alignment explanation
Indices: 73338109--73338233 Score: 151
Period size: 27 Copynumber: 4.7 Consensus size: 26
73338099 CTTAGGATAG
73338109 AATTACCAAAATATCCCCAGTTTGTAA
1 AATTACCAAAATA-CCCCAGTTTGTAA
73338136 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCC-AGTTTGTAA
** * *
73338163 AATTACCAAAATACCACTGGTTTATGA
1 AATTACCAAAATACC-CCAGTTTGTAA
* * *
73338190 AATTATCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCC-CAGTTTGTAA
73338217 AATTACCAAAATACCCC
1 AATTACCAAAATACCCC
73338234 TGATTTACAA
Statistics
Matches: 82, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
26 6 0.07
27 75 0.91
28 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCCAGTTTGTAA
Found at i:73338193 original size:54 final size:55
Alignment explanation
Indices: 73338134--73338337 Score: 166
Period size: 54 Copynumber: 3.7 Consensus size: 55
73338124 CCCAGTTTGT
*
73338134 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCACTGGTTTAT
1 AAAATTACCAAAATACCCCTCAGTTTGTAAAATTACCAAAATACCACTGGTTTAC
* * * * * *
73338188 GAAATTATCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCCTCAGTTTGTAAAATTACCAAAATACCACTGGTTTAC
* * * * * * *
73338242 AAAATTA-TAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACCA-AAATACCCCTCAGTTTGT-AAAATTACCA-AAATACCACTGGTTTAC
** ** * *
73338298 AAAATTACTGAAATA-CCCTTGGTTTGTAGATTTACCAAAA
1 AAAATTACCAAAATACCCCTCAGTTTGTAAAATTACCAAAA
73338338 CACCCTTGTA
Statistics
Matches: 116, Mismatches: 27, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
53 4 0.03
54 61 0.53
55 17 0.15
56 33 0.28
57 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (55 bp):
AAAATTACCAAAATACCCCTCAGTTTGTAAAATTACCAAAATACCACTGGTTTAC
Found at i:73338239 original size:27 final size:27
Alignment explanation
Indices: 73338109--73338248 Score: 142
Period size: 27 Copynumber: 5.2 Consensus size: 27
73338099 CTTAGGATAG
*
73338109 AATTACCAAAATATCCCCAG-TTTGTAA
1 AATTACCAAAATA-CCCCTGATTTGTAA
73338136 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* * * *
73338163 AATTACCAAAATACCACTGGTTTATGA
1 AATTACCAAAATACCCCTGATTTGTAA
* * *
73338190 AATTATCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
**
73338217 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
73338244 AATTA
1 AATTA
73338249 TAGAAATACC
Statistics
Matches: 91, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
26 7 0.08
27 80 0.88
28 4 0.04
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:73338255 original size:27 final size:27
Alignment explanation
Indices: 73338189--73338318 Score: 113
Period size: 27 Copynumber: 4.7 Consensus size: 27
73338179 CTGGTTTATG
* ** **
73338189 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTATAGAAATACCCTTGATTTACA
* *
73338216 AAATTACCA-AAATACCCCTGATTTACA
1 AAATTA-TAGAAATACCCTTGATTTACA
73338243 AAATTATAGAAATACCCTTGACTTT-CTAA
1 AAATTATAGAAATACCCTTGA-TTTAC--A
* *
73338272 AAATTATAGAAATACCATTGGTTTACA
1 AAATTATAGAAATACCCTTGATTTACA
73338299 AAATTACT-GAAATACCCTTG
1 AAATTA-TAGAAATACCCTTG
73338319 GTTTGTAGAT
Statistics
Matches: 84, Mismatches: 12, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
26 1 0.01
27 55 0.65
28 7 0.08
29 21 0.25
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTATAGAAATACCCTTGATTTACA
Found at i:73338297 original size:56 final size:54
Alignment explanation
Indices: 73338160--73338318 Score: 178
Period size: 54 Copynumber: 2.9 Consensus size: 54
73338150 CCCTAGTTTG
** * *
73338160 TAAAATTACCAAAATACCACTGGTTTATGAAATTATCGAAATACCC-TCAATTTG
1 TAAAATTACCAAAATACCACTGGTTTACAAAATTAT-GAAATACCCTTGAATTTC
* * *
73338214 TAAAATTACCAAAATACCCCTGATTTACAAAATTATAGAAATACCCTTGACTTTC
1 TAAAATTACCAAAATACCACTGGTTTACAAAATTAT-GAAATACCCTTGAATTTC
* *
73338269 TAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTG
1 T-AAAATTACCA-AAATACCACTGGTTTACAAAATTA-TGAAATACCCTTG
73338319 GTTTGTAGAT
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
54 41 0.46
55 7 0.08
56 40 0.45
57 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.31
Consensus pattern (54 bp):
TAAAATTACCAAAATACCACTGGTTTACAAAATTATGAAATACCCTTGAATTTC
Found at i:73338440 original size:27 final size:27
Alignment explanation
Indices: 73338334--73338440 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
73338324 TAGATTTACC
*
73338334 AAAACACCCTTGTAGGGTGAAATGA-C-T
1 AAAAC-CCC-TGTAGGGTAAAATGACCGT
* *
73338361 AAAATACCCCTATTA-GGTAAAAAGACCGT
1 -AAA-ACCCCT-GTAGGGTAAAATGACCGT
* *
73338390 AAAGCCCCTGTAGGGTAAAGTGACCGT
1 AAAACCCCTGTAGGGTAAAATGACCGT
*
73338417 AAAACCCCTGTATGGTAAAATGAC
1 AAAACCCCTGTAGGGTAAAATGAC
73338441 GAATATGCCC
Statistics
Matches: 64, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
26 2 0.03
27 47 0.73
28 12 0.19
29 3 0.05
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (27 bp):
AAAACCCCTGTAGGGTAAAATGACCGT
Found at i:73339329 original size:24 final size:25
Alignment explanation
Indices: 73339247--73339340 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
73339237 AGGAAGTGCT
*
73339247 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
73339272 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
73339297 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
73339321 AAAAGGGCTTTTCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
73339341 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
24 19 0.29
25 47 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:73339353 original size:24 final size:24
Alignment explanation
Indices: 73339247--73339353 Score: 135
Period size: 25 Copynumber: 4.4 Consensus size: 24
73339237 AGGAAGTGCT
* *
73339247 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
73339271 GAAAAGGGCTTTGCCCCAGTTTACC
1 -AAAAGGGCTTTGCCCCAGTTTATC
73339296 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
* *
73339321 AAAAGGGCTTTTCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
73339344 AAAAGAGGCT
1 AAAAG-GGCT
73339354 AGGCCTCCAG
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
23 9 0.12
24 21 0.27
25 47 0.61
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:73339594 original size:31 final size:31
Alignment explanation
Indices: 73339559--73339766 Score: 319
Period size: 31 Copynumber: 6.7 Consensus size: 31
73339549 CGTTTACAGT
* *
73339559 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
73339590 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
* **
73339621 AAAGGCTTCGGCCCAGAAATATGATTTATGA
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
*
73339652 TAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
* *
73339683 TAAGGCTTCAGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
*
73339714 TAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCTAGTGATATGATTTATGA
*
73339745 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCTAGTGATATG
73339767 TCGAGACTGA
Statistics
Matches: 164, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 5 0.03
31 159 0.97
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGGCCTAGTGATATGATTTATGA
Found at i:73342002 original size:78 final size:77
Alignment explanation
Indices: 73341916--73342120 Score: 189
Period size: 78 Copynumber: 2.6 Consensus size: 77
73341906 AAATTTAAAC
* * * * * *
73341916 CCGGTATAATACCAGCTCGA-AGCCTGCGGGA-TTTTAGCCCGGACATATTTCCAGCACGTAGCC
1 CCGGTATAATACCAGCAC-ATAGCCTGC-GAACCTTAAGCCCGGACATAATTCCAGCACATAGCC
*
73341979 TGCAGACCTTAAGT
64 TGCAGACCCTAAGT
* * *
73341993 CCGGTTATAATTCCAGCACATAGCCTGCGAACCTTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGG-TATAATACCAGCACATAGCCTGCGAACCTTAAGCCCGGACATAATTCCAGCACATAGCCT
*
73342058 GCGGACCCTAAGT
65 GCAGACCCTAAGT
** * * * * * *
73342071 CCAAATATAATTCCAGCATATAGCCTGCGGACCCTAAGTCCGGATATAAT
1 CC-GGTATAATACCAGCACATAGCCTGCGAACCTTAAGCCCGGACATAAT
73342121 CATCACTGAA
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
77 7 0.06
78 101 0.94
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (77 bp):
CCGGTATAATACCAGCACATAGCCTGCGAACCTTAAGCCCGGACATAATTCCAGCACATAGCCTG
CAGACCCTAAGT
Found at i:73342007 original size:39 final size:39
Alignment explanation
Indices: 73341954--73342120 Score: 235
Period size: 39 Copynumber: 4.3 Consensus size: 39
73341944 GGATTTTAGC
* * * * *
73341954 CCGGACATATTTCCAGCACGTAGCCTGCAGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* * *
73341993 CCGGTTATAATTCCAGCACATAGCCTGCGAACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
73342032 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
** *
73342071 CCAAATATAATTCCAGCATATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
73342110 CCGGATATAAT
1 CCGGATATAAT
73342121 CATCACTGAA
Statistics
Matches: 114, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:73344532 original size:15 final size:15
Alignment explanation
Indices: 73344494--73344569 Score: 55
Period size: 15 Copynumber: 5.0 Consensus size: 15
73344484 TAAAAATGAC
* *
73344494 AAGAAAACCAA-ATA
1 AAGAAATCCAAGACA
*
73344508 AAGAAGTCCAAGACA
1 AAGAAATCCAAGACA
* *
73344523 GAGAAATCCAAGATA
1 AAGAAATCCAAGACA
**
73344538 AAGAAACTCCTAAGATT
1 AAGAAA-TCC-AAGACA
*
73344555 CAGAAATCCAAGACA
1 AAGAAATCCAAGACA
73344570 CAATACCATA
Statistics
Matches: 48, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
14 9 0.19
15 23 0.48
16 6 0.12
17 10 0.21
ACGTcount: A:0.55, C:0.18, G:0.14, T:0.12
Consensus pattern (15 bp):
AAGAAATCCAAGACA
Found at i:73351449 original size:43 final size:43
Alignment explanation
Indices: 73351401--73351573 Score: 274
Period size: 43 Copynumber: 4.0 Consensus size: 43
73351391 CCAGCATTAC
*
73351401 GCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
73351444 GCCTGCTAGGAATGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * * *
73351487 GCCTGCTAGGCACGAAGGCCTGAATACACATTACCGGTATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
73351530 GCCTGCTAGGCACGAAGGCCCGAATGCACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
73351573 G
1 G
73351574 GCCCGAATAC
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 116 1.00
ACGTcount: A:0.31, C:0.31, G:0.26, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:73351576 original size:27 final size:27
Alignment explanation
Indices: 73351538--73351596 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
73351528 AAGCCTGCTA
*
73351538 GGCACGAAGGCCCGAATGCACATCACC
1 GGCACGAAGGCCCGAATACACATCACC
73351565 GGCACGAAGGCCCGAATACACATCACC
1 GGCACGAAGGCCCGAATACACATCACC
*
73351592 AGCAC
1 GGCAC
73351597 AAAGCCTGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.37, G:0.24, T:0.07
Consensus pattern (27 bp):
GGCACGAAGGCCCGAATACACATCACC
Found at i:73351691 original size:37 final size:38
Alignment explanation
Indices: 73351618--73351700 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
73351608 GGCACGAAGG
* * * *
73351618 CCCGAATATAATACCAACACTAGGCTTGCGGGATTTAT
1 CCCGGATATAATACCAACACGAAGCTTGCGGGATTTAA
*
73351656 CCCGGATATAATACCAGCACGAAGC-TGCGGGATTTAA
1 CCCGGATATAATACCAACACGAAGCTTGCGGGATTTAA
73351693 CCCGGATA
1 CCCGGATA
73351701 CACATCAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
37 19 0.47
38 21 0.52
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAACACGAAGCTTGCGGGATTTAA
Found at i:73356122 original size:45 final size:45
Alignment explanation
Indices: 73356055--73356176 Score: 165
Period size: 45 Copynumber: 2.7 Consensus size: 45
73356045 CTAGGAATTT
*
73356055 AGAAATCTGAGCTCGTTGAGTTGGTCCGAGTTCGTGGTATATGTG
1 AGAAATCTGAGCTCGTTGAGTTGGTCCGAGTTCGTGATATATGTG
* * * *
73356100 AGAAATCTGAACTTGTTAAGTTGGTCCAAGTTCGTGATATATGTG
1 AGAAATCTGAGCTCGTTGAGTTGGTCCGAGTTCGTGATATATGTG
* *
73356145 A-AGCATCTGAGCTCGCTGAGTTGGTCCGAGTT
1 AGA-AATCTGAGCTCGTTGAGTTGGTCCGAGTT
73356177 TATTATGGAT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 1 0.02
45 64 0.98
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.33
Consensus pattern (45 bp):
AGAAATCTGAGCTCGTTGAGTTGGTCCGAGTTCGTGATATATGTG
Found at i:73356202 original size:44 final size:45
Alignment explanation
Indices: 73356154--73356239 Score: 138
Period size: 44 Copynumber: 1.9 Consensus size: 45
73356144 GAAGCATCTG
*
73356154 AGCTCGCTGAGTTGGTCCGAGTTTATTATGGATGCGA-GCATCCA
1 AGCTCGCTGAGTTGGTCCGAGTTCATTATGGATGCGATGCATCCA
* *
73356198 AGCTCGTTGAGTTGGTTCGAGTTCATTATGGATGCGATGCAT
1 AGCTCGCTGAGTTGGTCCGAGTTCATTATGGATGCGATGCAT
73356240 GTGACATCCA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 34 0.89
45 4 0.11
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.33
Consensus pattern (45 bp):
AGCTCGCTGAGTTGGTCCGAGTTCATTATGGATGCGATGCATCCA
Found at i:73362334 original size:70 final size:72
Alignment explanation
Indices: 73362220--73362371 Score: 245
Period size: 71 Copynumber: 2.1 Consensus size: 72
73362210 CGGGGAATCA
* *
73362220 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAAT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAAT
73362284 GGATATC
66 GGATATC
***
73362291 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAAT
73362355 GGATATC
66 GGATATC
73362362 GCACTTAGCA
1 GCACTTAGCA
73362372 CCACCAATGA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 28 0.37
71 47 0.63
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (72 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAAT
GGATATC
Found at i:73362414 original size:26 final size:26
Alignment explanation
Indices: 73362384--73362434 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
73362374 ACCAATGAAC
*
73362384 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
73362410 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
73362435 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:73362417 original size:103 final size:102
Alignment explanation
Indices: 73362291--73362511 Score: 372
Period size: 103 Copynumber: 2.2 Consensus size: 102
73362281 AATGGATATC
73362291 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* *
73362356 GAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GATCA-CGCACATAGCACCACC-ATAAACCGGGGAATCA
73362394 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
*
73362459 GATCACGCACATAGCACCACCATAAATCGGGGAATCA
66 GATCACGCACATAGCACCACCATAAACCGGGGAATCA
**
73362496 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
73362512 TTTATATACA
Statistics
Matches: 112, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
102 28 0.25
103 83 0.74
104 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.18
Consensus pattern (102 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATCACGCACATAGCACCACCATAAACCGGGGAATCA
Found at i:73362874 original size:29 final size:29
Alignment explanation
Indices: 73362841--73362904 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
73362831 TAATCCACCA
73362841 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
73362870 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
73362900 CCCAA
1 CCCAA
73362905 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:73362878 original size:30 final size:30
Alignment explanation
Indices: 73362848--73362904 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
73362838 CCACCCAACT
73362848 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
73362877 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
73362905 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:73369971 original size:104 final size:104
Alignment explanation
Indices: 73369849--73370072 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
73369839 AATGGATATC
73369849 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
73369914 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
73369953 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
73370018 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
73370057 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
73370073 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:73370434 original size:29 final size:29
Alignment explanation
Indices: 73370401--73370464 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
73370391 TAATCCACCA
73370401 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
73370430 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
73370460 CCCAA
1 CCCAA
73370465 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:73370438 original size:30 final size:30
Alignment explanation
Indices: 73370408--73370464 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
73370398 CCACCCAACT
73370408 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
73370437 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
73370465 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:73383826 original size:34 final size:34
Alignment explanation
Indices: 73383755--73383819 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
73383745 GTATATCTGT
* *
73383755 ACTG-TACTGTTACTGAGATGGGCTCAGGCCCAC
1 ACTGATACTGATACTGAGATGGGCTAAGGCCCAC
73383788 ACTGATACTGATACTGTA-ATGGGCTAAGGCCC
1 ACTGATACTGATACTG-AGATGGGCTAAGGCCC
73383820 TGACTGAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 4 0.14
34 23 0.82
35 1 0.04
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (34 bp):
ACTGATACTGATACTGAGATGGGCTAAGGCCCAC
Found at i:73387461 original size:20 final size:20
Alignment explanation
Indices: 73387436--73387480 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
73387426 TTATACACAA
73387436 TAAGAGAGTTTTGAGAAGCT
1 TAAGAGAGTTTTGAGAAGCT
73387456 TAAGAGAGTTTTGAGAAGCT
1 TAAGAGAGTTTTGAGAAGCT
73387476 TAAGA
1 TAAGA
73387481 ATGTTCTGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.29, T:0.29
Consensus pattern (20 bp):
TAAGAGAGTTTTGAGAAGCT
Found at i:73391322 original size:28 final size:29
Alignment explanation
Indices: 73391290--73391357 Score: 104
Period size: 28 Copynumber: 2.4 Consensus size: 29
73391280 TATATACATG
73391290 CATATGGCCCACTAGGCCC-AATC-TCATT
1 CATATGGCCCACTAGGCCCAAATCAT-ATT
*
73391318 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAAATCATATT
73391347 CATATGGCCCA
1 CATATGGCCCA
73391358 TCCGGCCCGA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
28 18 0.49
29 18 0.49
30 1 0.03
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAAATCATATT
Found at i:73391351 original size:29 final size:28
Alignment explanation
Indices: 73391290--73391375 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 28
73391280 TATATACATG
*
73391290 CATATGGCCCACTAGGCCCAATC-TCATT
1 CATATGGCCCATTAGGCCCAATCAT-ATT
73391318 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCC-AATCATATT
**
73391347 CATATGGCCCATCCGGCCCGAATCA-ATT
1 CATATGGCCCATTAGGCCC-AATCATATT
73391375 C
1 C
73391376 CAAACTATGT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
28 22 0.42
29 29 0.56
30 1 0.02
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (28 bp):
CATATGGCCCATTAGGCCCAATCATATT
Found at i:73393138 original size:40 final size:40
Alignment explanation
Indices: 73393083--73393270 Score: 324
Period size: 40 Copynumber: 4.7 Consensus size: 40
73393073 ATTCGGATTG
73393083 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73393123 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73393163 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73393203 ATAACCGGGCTAGGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
73393243 A-AACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
73393271 AGCTAGTAGC
Statistics
Matches: 139, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 26 0.19
40 113 0.81
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:73399498 original size:40 final size:41
Alignment explanation
Indices: 73399439--73399590 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
73399429 CATTTGAATG
* * *
73399439 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
73399479 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
73399519 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
73399559 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
73399591 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:73399602 original size:80 final size:80
Alignment explanation
Indices: 73399439--73399610 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
73399429 CATTTGAATG
* * * * *
73399439 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
73399504 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
73399519 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
73399583 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
73399599 ATATCC-GGCTAA
1 ATATCCGGGCTAA
73399611 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 71 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:73401362 original size:17 final size:18
Alignment explanation
Indices: 73401340--73401374 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
73401330 TTCAGGTCTA
*
73401340 TGTGGG-CCATATGGGCT
1 TGTGGGCCCACATGGGCT
73401357 TGTGGGCCCACATGGGCT
1 TGTGGGCCCACATGGGCT
73401375 GCATGGGACG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.11, C:0.23, G:0.40, T:0.26
Consensus pattern (18 bp):
TGTGGGCCCACATGGGCT
Found at i:73412712 original size:18 final size:18
Alignment explanation
Indices: 73412653--73412713 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
73412643 AAAGGGTGAG
*
73412653 AAGTAAAAGTTTAGGGGGA
1 AAGTAAAAGTTT-GAGGGA
* *
73412672 AAATAAAAAGTTT-TGGG-
1 AAGT-AAAAGTTTGAGGGA
73412689 AAGTAAAAGTTTGAGGGA
1 AAGTAAAAGTTTGAGGGA
73412707 AAGTAAA
1 AAGTAAA
73412714 TAGGGTAGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
16 8 0.23
17 6 0.17
18 10 0.29
19 3 0.09
20 8 0.23
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.23
Consensus pattern (18 bp):
AAGTAAAAGTTTGAGGGA
Found at i:73414129 original size:16 final size:17
Alignment explanation
Indices: 73414095--73414128 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
73414085 TATTTAAAAA
*
73414095 ATAAAAAATTTAATTTTT
1 ATAAAAAAATTAA-TTTT
73414113 ATAAAAAAATTAATTT
1 ATAAAAAAATTAATTT
73414129 AAAAATCTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 3 0.20
18 12 0.80
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATAAAAAAATTAATTTT
Found at i:73416407 original size:3 final size:3
Alignment explanation
Indices: 73416393--73416451 Score: 100
Period size: 3 Copynumber: 19.7 Consensus size: 3
73416383 TGATATTGAA
*
73416393 GAT GAA GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
*
73416441 GAT TAT GAT GA
1 GAT GAT GAT GA
73416452 GGTTTGACCT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:73422152 original size:86 final size:86
Alignment explanation
Indices: 73422003--73422174 Score: 317
Period size: 86 Copynumber: 2.0 Consensus size: 86
73421993 GAAATGCTAC
* *
73422003 CAAGTATCGGTTCCGACATTCCGTGGAAGACGGAAAAGATGTGTGATTGAGGAAAATCCCGTTTG
1 CAAGTATCAGTTCCGACATTCCGTAGAAGACGGAAAAGATGTGTGATTGAGGAAAATCCCGTTTG
73422068 AACCTTGGGAATAGATTAGGA
66 AACCTTGGGAATAGATTAGGA
*
73422089 CAAGTATCAGTTCCGACATTCCGTAGAAGACGGAAAAGATGTGTGATTGAGGAAAATCTCGTTTG
1 CAAGTATCAGTTCCGACATTCCGTAGAAGACGGAAAAGATGTGTGATTGAGGAAAATCCCGTTTG
73422154 AACCTTGGGAATAGATTAGGA
66 AACCTTGGGAATAGATTAGGA
73422175 TATTTAAGTT
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 83 1.00
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.25
Consensus pattern (86 bp):
CAAGTATCAGTTCCGACATTCCGTAGAAGACGGAAAAGATGTGTGATTGAGGAAAATCCCGTTTG
AACCTTGGGAATAGATTAGGA
Found at i:73422549 original size:20 final size:20
Alignment explanation
Indices: 73422524--73422563 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
73422514 AGGTATGTGC
73422524 TTAAACCCTCGGGTTGAGAA
1 TTAAACCCTCGGGTTGAGAA
73422544 TTAAACCCTCGGGTTGAGAA
1 TTAAACCCTCGGGTTGAGAA
73422564 CTTGGTATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (20 bp):
TTAAACCCTCGGGTTGAGAA
Found at i:73426109 original size:40 final size:40
Alignment explanation
Indices: 73426072--73426297 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
73426062 GCTACTCGTT
* *
73426072 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
73426112 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
73426152 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
73426192 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
73426232 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
73426273 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
73426298 CATCATTCAA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 154 0.91
41 12 0.07
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:73426281 original size:120 final size:120
Alignment explanation
Indices: 73426072--73426297 Score: 307
Period size: 120 Copynumber: 1.9 Consensus size: 120
73426062 GCTACTCGTT
73426072 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
73426137 ATTTAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * **
73426192 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGTACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* * *
73426254 CGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
73426298 CATCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
119 6 0.06
120 76 0.82
121 11 0.12
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:73431302 original size:25 final size:25
Alignment explanation
Indices: 73431274--73431352 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
73431264 CTAATGGCCG
73431274 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
73431299 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
73431321 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
73431346 ATGTGAT
1 ATGTGAT
73431353 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:73431413 original size:49 final size:47
Alignment explanation
Indices: 73431227--73431547 Score: 527
Period size: 47 Copynumber: 6.7 Consensus size: 47
73431217 TTAGGATTCT
* * *
73431227 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
73431274 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
73431321 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
73431368 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
73431417 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
73431466 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
73431513 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73431548 TCCCGAAGGG
Statistics
Matches: 264, Mismatches: 7, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 167 0.63
49 96 0.36
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:73431442 original size:96 final size:94
Alignment explanation
Indices: 73431227--73431547 Score: 527
Period size: 96 Copynumber: 3.4 Consensus size: 94
73431217 TTAGGATTCT
* * *
73431227 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
73431291 GTGTATATATGTGATAAGGCCTAATGGCCG
65 GTGTATATATGTGATAAGGCCTAATGGCCG
73431321 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
73431386 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG--TATATATGTGATAAGGCCTAATGGCCG
73431417 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
73431482 AGTGTATATATGTGATAAGGCCTAATAGCCG
64 AGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
73431513 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73431548 TCCCGAAGGG
Statistics
Matches: 215, Mismatches: 7, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
93 1 0.00
94 76 0.35
96 91 0.42
98 47 0.22
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:73436071 original size:48 final size:48
Alignment explanation
Indices: 73436017--73436289 Score: 379
Period size: 48 Copynumber: 5.6 Consensus size: 48
73436007 CATGTATAAA
*
73436017 ACCATGTCTGAGACATGGCATCGGCATCGTTATGTTAGCCAGTGTAAG
1 ACCATGTCTGAGACATGGCATCGGCATCGTTATGTGAGCCAGTGTAAG
* *
73436065 ACCATGTCTGAGACATGACATCGACATCGTTATGTGAGCCAGTGTAA-
1 ACCATGTCTGAGACATGGCATCGGCATCGTTATGTGAGCCAGTGTAAG
*
73436112 AGCCATGTCTAGGACATGGCATCGGCATCGGCATCGTTATGTGAGCCAGTGTAAG
1 A-CCATGTCT--G--A-GACAT-GGCATCGGCATCGTTATGTGAGCCAGTGTAAG
* * *
73436167 ACCATGTCTGGGACATGGCATCGGCATCGTTATGTAAGCCAGTATAAG
1 ACCATGTCTGAGACATGGCATCGGCATCGTTATGTGAGCCAGTGTAAG
* *
73436215 ACCATGTCTGGGACATGGCATCGGCATCATTATGTGAGCCAGTGTAAG
1 ACCATGTCTGAGACATGGCATCGGCATCGTTATGTGAGCCAGTGTAAG
73436263 ACCATGTCTTG-GACATGGCATCGGCAT
1 ACCATGTC-TGAGACATGGCATCGGCAT
73436290 GAGGCATTGT
Statistics
Matches: 203, Mismatches: 13, Indels: 18
0.87 0.06 0.08
Matches are distributed among these distances:
47 1 0.00
48 151 0.74
49 6 0.03
50 1 0.00
52 2 0.01
53 4 0.02
54 37 0.18
55 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (48 bp):
ACCATGTCTGAGACATGGCATCGGCATCGTTATGTGAGCCAGTGTAAG
Found at i:73436172 original size:102 final size:101
Alignment explanation
Indices: 73436033--73436285 Score: 367
Period size: 102 Copynumber: 2.5 Consensus size: 101
73436023 TCTGAGACAT
* *
73436033 GGCATCGGCATCGTTATGTTAGCCAGTGTAAGACCATGTCTGAGACATGACATCGACATCGTTAT
1 GGCATCGGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTG-GACATGGCATCGACATCGTTAT
* *
73436098 GTGAGCCAGTGTAA-AGCCATGTCTAGGACATGGCATC
65 GTAAGCCAGTATAAGA-CCATGTCTAGGACATGGCATC
*
73436135 GGCATCGGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGTTAT
1 GGCATCGGCATCGTTATGTGAGCCAGTGTAAGACCATGTCT-GGACATGGCATCGACATCGTTAT
*
73436200 GTAAGCCAGTATAAGACCATGTCTGGGACATGGCATC
65 GTAAGCCAGTATAAGACCATGTCTAGGACATGGCATC
73436237 GGCAT---CA---TTATGTGAGCCAGTGTAAGACCATGTCTTGGACATGGCATCG
1 GGCATCGGCATCGTTATGTGAGCCAGTGTAAGACCATGTC-TGGACATGGCATCG
73436286 GCATGAGGCA
Statistics
Matches: 142, Mismatches: 6, Indels: 12
0.89 0.04 0.08
Matches are distributed among these distances:
96 40 0.28
97 1 0.01
99 2 0.01
102 97 0.68
103 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (101 bp):
GGCATCGGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGACATGGCATCGACATCGTTATG
TAAGCCAGTATAAGACCATGTCTAGGACATGGCATC
Found at i:73436188 original size:42 final size:42
Alignment explanation
Indices: 73436141--73436369 Score: 162
Period size: 48 Copynumber: 5.1 Consensus size: 42
73436131 CATCGGCATC
73436141 GGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGG--A---CAT
* *
73436188 CGGCATCGTTATGTAAGCCAGTATAAGACCATGTCTGGGACAT
1 -GGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGGACAT
*
73436231 GGCATCGGCATCATTATGTGAGCCAGTGTAAGACCATGTCTTGGACAT
1 GGCATC-G-----TTATGTGAGCCAGTGTAAGACCATGTCTGGGACAT
** *
73436279 GGCATCGGCA--TGAGGCATTGTGTAAGACCATAG-CTGGG-CTATT
1 GGCATCGTTATGTGAGCCA--GTGTAAGACCAT-GTCTGGGAC-A-T
* * *
73436322 GGCATCGATATGAGATTTCCA-TGTAAGACCATGTCTGGGACAT
1 GGCATCGTTATGTGA--GCCAGTGTAAGACCATGTCTGGGACAT
*
73436365 AGCAT
1 GGCAT
73436370 TGGTATGATA
Statistics
Matches: 149, Mismatches: 15, Indels: 39
0.73 0.07 0.19
Matches are distributed among these distances:
40 6 0.04
41 1 0.01
42 24 0.16
43 20 0.13
44 17 0.11
45 3 0.02
46 1 0.01
47 3 0.02
48 74 0.50
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (42 bp):
GGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGGACAT
Found at i:73436256 original size:150 final size:150
Alignment explanation
Indices: 73436017--73436289 Score: 458
Period size: 150 Copynumber: 1.8 Consensus size: 150
73436007 CATGTATAAA
* *
73436017 ACCATGTCTGAGACATGGCATCGGCATCGTTATGTTAGCCAGTGTAAGACCATGTCTGAGACATG
1 ACCATGTCTGAGACATGGCATCGGCATCGTTATGTAAGCCAGTATAAGACCATGTCTGAGACATG
*
73436082 ACATCGACATCGTTATGTGAGCCAGTGTAA-AGCCATGTCTAGGACATGGCATCGGCATCGGCAT
66 ACATCGACATCATTATGTGAGCCAGTGTAAGA-CCATGTCTAGGACATGGCATCGGCATCGGCAT
73436146 CGTTATGTGAGCCAGTGTAAG
130 CGTTATGTGAGCCAGTGTAAG
* *
73436167 ACCATGTCTGGGACATGGCATCGGCATCGTTATGTAAGCCAGTATAAGACCATGTCTGGGACATG
1 ACCATGTCTGAGACATGGCATCGGCATCGTTATGTAAGCCAGTATAAGACCATGTCTGAGACATG
* * *
73436232 GCATCGGCATCATTATGTGAGCCAGTGTAAGACCATGTCTTGGACATGGCATCGGCAT
66 ACATCGACATCATTATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAT
73436290 GAGGCATTGT
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
150 113 0.99
151 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (150 bp):
ACCATGTCTGAGACATGGCATCGGCATCGTTATGTAAGCCAGTATAAGACCATGTCTGAGACATG
ACATCGACATCATTATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCGGCATC
GTTATGTGAGCCAGTGTAAG
Found at i:73436522 original size:17 final size:17
Alignment explanation
Indices: 73436500--73436533 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
73436490 AGTATGTACG
73436500 CAAAATTCATGAGTAAT
1 CAAAATTCATGAGTAAT
73436517 CAAAATTCATGAGTAAT
1 CAAAATTCATGAGTAAT
73436534 GAATTCGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (17 bp):
CAAAATTCATGAGTAAT
Found at i:73448465 original size:19 final size:19
Alignment explanation
Indices: 73448441--73448477 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
73448431 TAACAAATAA
73448441 GAATCTAATATGTTTACAG
1 GAATCTAATATGTTTACAG
73448460 GAATCTAATATGTTTACA
1 GAATCTAATATGTTTACA
73448478 ACATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (19 bp):
GAATCTAATATGTTTACAG
Found at i:73452006 original size:24 final size:24
Alignment explanation
Indices: 73451971--73452038 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 24
73451961 GTGACAGAGT
*
73451971 CACCAGATACAGATATTTTGCA-GTC
1 CACCAGA-ACAGATA-TTTGCAGGGC
*
73451996 CACCAGAACAGATATTGGCAGGGC
1 CACCAGAACAGATATTTGCAGGGC
73452020 CACCAGAACAGATAATTTG
1 CACCAGAACAGAT-ATTTG
73452039 TGTCATAGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 5 0.13
24 22 0.58
25 11 0.29
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.21
Consensus pattern (24 bp):
CACCAGAACAGATATTTGCAGGGC
Found at i:73452212 original size:28 final size:28
Alignment explanation
Indices: 73452159--73452225 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
73452149 AAAATAACCC
*
73452159 TAGGGGTATAA-GGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
73452186 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
73452214 TAGGGATATAAT
1 TAGGGGTATAAT
73452226 AGTACATCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
27 11 0.30
28 26 0.70
ACGTcount: A:0.33, C:0.07, G:0.25, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:73459737 original size:27 final size:27
Alignment explanation
Indices: 73459699--73459787 Score: 126
Period size: 27 Copynumber: 3.2 Consensus size: 27
73459689 GTGACAGAGT
73459699 CACCAGATACAGATATTTGTGGCAGTGC
1 CACCAGA-ACAGATATTTGTGGCAGTGC
* *
73459727 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
73459754 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
73459782 CACCAG
1 CACCAG
73459788 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
27 31 0.56
28 24 0.44
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:73459939 original size:27 final size:27
Alignment explanation
Indices: 73459896--73459958 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
73459886 TTAACCCTAG
* *
73459896 GGGTATAAAGGTCATTTTGCATACATA
1 GGGTATAATGGTAATTTTGCATACATA
73459923 GGGTATAATGGTAATTTTGCATACATA
1 GGGTATAATGGTAATTTTGCATACATA
73459950 GGGTATAAT
1 GGGTATAAT
73459959 AGTACATCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (27 bp):
GGGTATAATGGTAATTTTGCATACATA
Found at i:73467578 original size:29 final size:28
Alignment explanation
Indices: 73467545--73467636 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 28
73467535 GTGACAGAGT
73467545 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTTTGTGGCAGTGC
* *
73467574 CACCAGAACAGATATATATGTGGCAGGGC
1 CACCAGAACAGATAT-TTTGTGGCAGTGC
*
73467603 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATATTTTGTGGCAGT-GC
73467631 CACCAG
1 CACCAG
73467637 GACGCTTCCT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
28 24 0.43
29 32 0.57
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATATTTTGTGGCAGTGC
Found at i:73467789 original size:28 final size:28
Alignment explanation
Indices: 73467742--73467809 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
73467732 AAATTAACCC
* *
73467742 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
73467770 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
* *
73467798 TAAGGATATAAT
1 TAGGGGTATAAT
73467810 AGTACATCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:73469291 original size:47 final size:47
Alignment explanation
Indices: 73469235--73469688 Score: 800
Period size: 47 Copynumber: 9.6 Consensus size: 47
73469225 TTGGCCACTC
*
73469235 GGCCCTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
73469282 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
73469329 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* *
73469376 GGCCTTATCACATATATACACTTTCACATTCATCATATCGGCTATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
*
73469423 GGCCTTATCACATATATACACTTTCACATTCATCATATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* * *
73469470 GGCCTTATCACATATATATACACTTTAACATTCATCACATTGGCCATTC
1 GGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA
73469519 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
73469566 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA
*
73469615 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
73469662 GGCCTTATCACATATATACACTTTCAC
1 GGCCTTATCACATATATACACTTTCAC
73469689 TACGAATAAA
Statistics
Matches: 391, Mismatches: 12, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 301 0.77
49 90 0.23
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
Found at i:73469355 original size:94 final size:94
Alignment explanation
Indices: 73469235--73469688 Score: 800
Period size: 96 Copynumber: 4.8 Consensus size: 94
73469225 TTGGCCACTC
*
73469235 GGCCCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
73469300 CACTTTCACATTCATCACATCGGCCATTA
66 CACTTTCACATTCATCACATCGGCCATTA
73469329 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
* *
73469394 CACTTTCACATTCATCATATCGGCTATTA
66 CACTTTCACATTCATCACATCGGCCATTA
*
73469423 GGCCTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATA
* * *
73469488 TACACTTTAACATTCATCACATTGGCCATTC
64 TACACTTTCACATTCATCACATCGGCCATTA
73469519 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATA
73469584 TACACTTTCACATTCATCACATCGGCCATTA
64 TACACTTTCACATTCATCACATCGGCCATTA
*
73469615 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
73469680 CACTTTCAC
66 CACTTTCAC
73469689 TACGAATAAA
Statistics
Matches: 344, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
94 164 0.48
96 180 0.52
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
CACTTTCACATTCATCACATCGGCCATTA
Found at i:73469743 original size:143 final size:143
Alignment explanation
Indices: 73469235--73469688 Score: 738
Period size: 143 Copynumber: 3.2 Consensus size: 143
73469225 TTGGCCACTC
* * *
73469235 GGCCCTATCACATATATACACTTTCACATTCATCACATCGGC-CATTAGGCCTTATC-ACATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCAAATCGGCTCATTAGGCCTTATCAAAATATA
73469298 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
66 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
73469363 ACATCGGCCATTA
131 ACATCGGCCATTA
* *
73469376 GGCCTTATCACATATATACACTTTCACATTCATCATATCGGCT-ATTAGGCCTTATC-ACATATA
1 GGCCTTATCACATATATACACTTTCACATTCATCAAATCGGCTCATTAGGCCTTATCAAAATATA
* *
73469439 TACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTTTAACATTCA
66 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCA
* *
73469504 TCACATTGGCCATTC
129 TCACATCGGCCATTA
* *
73469519 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGC-CATTAGGCCTTATCACATATAT
1 GGCCTTATCACATATATACACTTTCACATTCATCAAATCGGCTCATTAGGCCTTATCA-AAATAT
73469583 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
65 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
*
73469648 CACATCGGCTATTA
130 CACATCGGCCATTA
73469662 GGCCTTATCACATATATACACTTTCAC
1 GGCCTTATCACATATATACACTTTCAC
73469689 TACGAATAAA
Statistics
Matches: 294, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
141 101 0.34
143 146 0.50
145 47 0.16
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
GGCCTTATCACATATATACACTTTCACATTCATCAAATCGGCTCATTAGGCCTTATCAAAATATA
TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
ACATCGGCCATTA
Found at i:73473382 original size:40 final size:40
Alignment explanation
Indices: 73473350--73473741 Score: 676
Period size: 40 Copynumber: 9.8 Consensus size: 40
73473340 CCAGCATGAT
* * * * *
73473350 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCTCGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** **
73473390 TGCTCTTCGGGGTTTAGTACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
73473430 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
73473470 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
73473510 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
73473550 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
73473590 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
73473630 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
73473670 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
73473710 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
73473742 CTCAATTCTC
Statistics
Matches: 333, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 333 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:73475236 original size:47 final size:47
Alignment explanation
Indices: 73475169--73475805 Score: 1049
Period size: 47 Copynumber: 13.5 Consensus size: 47
73475159 CTTCGGGACC
* * * * * ** *
73475169 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCTGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
73475216 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
73475263 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
73475310 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* * * * * *
73475357 TATCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
73475404 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
73475451 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
73475498 TATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
73475545 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
73475592 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
73475641 TATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
73475688 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
73475737 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
73475784 TATCACATATATACACTTTCAC
1 TATCACATATATACACTTTCAC
73475806 TACGAATCAA
Statistics
Matches: 553, Mismatches: 33, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
47 462 0.84
49 91 0.16
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:73480912 original size:46 final size:48
Alignment explanation
Indices: 73480709--73480982 Score: 262
Period size: 46 Copynumber: 5.8 Consensus size: 48
73480699 GGGGTAAGGT
73480709 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TATCATCATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CATC-TCGAG
* * * *
73480758 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCG-T
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCT-CGAG
* * * * *
73480808 GCCAATGCCATGTCCTAGACATGGTCTTACACTGAC--ACTTCTC-ATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-G
*
73480854 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAG
* * * ** *
73480900 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACT-CGTCTTAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TTACATCTCGAG
*
73480946 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
73480983 CTCATAATGT
Statistics
Matches: 188, Mismatches: 25, Indels: 26
0.79 0.10 0.11
Matches are distributed among these distances:
44 12 0.06
45 14 0.07
46 62 0.33
47 15 0.08
48 12 0.06
49 34 0.18
50 32 0.17
51 6 0.03
52 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAG
Found at i:73480973 original size:94 final size:95
Alignment explanation
Indices: 73480713--73481027 Score: 305
Period size: 94 Copynumber: 3.3 Consensus size: 95
73480703 TAAGGTGCCG
* ** * *
73480713 ATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATCATCGAGGCTGATGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC-ACTC-TC-TTAATGCCGATGCCATGTCCCAGA
* *
73480777 CATGGTCTTACACTAGCTCTCACATATCCGTGCCA
63 CATGGTCTTACACTGGCTCT-ACATAT-CGGGCCA
* *
73480812 ATGCCATGTCCTAGACATGGTCTTACACT-GACACT-TC-TCATAGCCGATG-CATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CACTCTCTTAAT-GCCGATGCCATGTCCCAGAC
* * *
73480873 AT-GTCTTACACTGGCT-TACGTCTCGAGGCCG
64 ATGGTCTTACACTGGCTCTACATATCG-GGCCA
*
73480904 ATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTTAATGCCGATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTC-TCTTAATGCCGATGCCATGTCCCAGACA
73480967 TGGTCTTACACTGGCTCT-CATAAT-GTGGCCA
65 TGGTCTTACACTGGCTCTACAT-ATCG-GGCCA
* *
73480998 ATG-CATGTCCCAAACAT-GTCGTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
73481028 CCACAATGGC
Statistics
Matches: 185, Mismatches: 19, Indels: 29
0.79 0.08 0.12
Matches are distributed among these distances:
90 14 0.08
91 16 0.09
92 19 0.10
93 17 0.09
94 62 0.34
95 17 0.09
96 6 0.03
97 2 0.01
98 2 0.01
99 30 0.16
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCTCTTAATGCCGATGCCATGTCCCAGACAT
GGTCTTACACTGGCTCTACATATCGGGCCA
Found at i:73488538 original size:46 final size:47
Alignment explanation
Indices: 73488338--73488652 Score: 253
Period size: 46 Copynumber: 6.7 Consensus size: 47
73488328 GTAAGGTGCT
73488338 GATGCCATGTCCCAGACATGGTCTTACACTAGC-TATCATCATCGAGGCC
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCTTA-CATC-TCGAGGCC
* *
73488387 GATACCAT-TCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTA--CC
1 GAT-GCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCT-CG-AGGCC
* *
73488436 GATGCCATGTCCTAGACATGGTCTTACACT-GAC--ACATCTCGTA-GCT
1 GATG-CATGTCCCAGACATGGTCTTACACTAG-CTTACATCTCG-AGGCC
* * *
73488482 GATGTATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAGGCC
* * * *
73488528 GATGCATGTCCCAGACAT-GTCTTACACTAGCACT-CGTCTCAATGCC
1 GATGCATGTCCCAGACATGGTCTTACACTAGC-TTACATCTCGAGGCC
* * *
73488574 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCC
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCT-TACAT-CTCGAGGCC
* *
73488622 AATGCATGTCCCAGACAT-GTTTTACACTAGC
1 GATGCATGTCCCAGACATGGTCTTACACTAGC
73488653 CCACAATAGC
Statistics
Matches: 222, Mismatches: 25, Indels: 41
0.77 0.09 0.14
Matches are distributed among these distances:
44 11 0.05
45 18 0.08
46 73 0.33
47 29 0.13
48 45 0.20
49 17 0.08
50 27 0.12
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAGGCC
Found at i:73488598 original size:94 final size:96
Alignment explanation
Indices: 73488338--73488652 Score: 318
Period size: 94 Copynumber: 3.3 Consensus size: 96
73488328 GTAAGGTGCT
* *
73488338 GATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCATCATCGAGGCCGATACCAT-TCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-ACTCATC-TC-ATGCCGATGCCATGTCCCAG
*
73488401 ACATGGTCTTACACTAGCTCTCACATATCCGTA--CC
63 ACATGGTCTTACACTGGCTCT-ACATAT-CG-AGGCC
* * * * *
73488436 GATGCCATGTCCTAGACATGGTCTTACACT-G-ACACATCTCGTAGCTGATG-TATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCAT-GCCGATGCCATGTCCCAGAC
* *
73488498 AT-GTCTTACACTGGCT-TACGTCTCGAGGCC
65 ATGGTCTTACACTGGCTCTACATATCGAGGCC
*
73488528 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAATGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTC-ATGCCGATGCCATGTCCCAGAC
*
73488591 ATGGTCTTACACTGGCTCT-CATAAT-GTGGCC
65 ATGGTCTTACACTGGCTCTACAT-ATCGAGGCC
* *
73488622 AATG-CATGTCCCAGACAT-GTTTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
73488653 CCACAATAGC
Statistics
Matches: 184, Mismatches: 21, Indels: 28
0.79 0.09 0.12
Matches are distributed among these distances:
90 11 0.06
91 16 0.09
92 23 0.12
93 15 0.08
94 65 0.35
95 20 0.11
96 4 0.02
97 1 0.01
98 29 0.16
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCATGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCTCTACATATCGAGGCC
Found at i:73489402 original size:14 final size:14
Alignment explanation
Indices: 73489383--73489409 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73489373 GTGTGGAAAC
73489383 CACTTACTTGTGAA
1 CACTTACTTGTGAA
73489397 CACTTACTTGTGA
1 CACTTACTTGTGA
73489410 GTGCTTCAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (14 bp):
CACTTACTTGTGAA
Found at i:73495416 original size:20 final size:21
Alignment explanation
Indices: 73495373--73495418 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
73495363 ACTGTTTTGT
73495373 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
73495393 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
73495412 TATGGGC
1 TATGGGC
73495419 AAGACCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:73496621 original size:34 final size:35
Alignment explanation
Indices: 73496570--73496641 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
73496560 ATTCTGTAGT
* *
73496570 TAGGGTAATACTGAAACTGTAGAA-ACTGAGACAG
1 TAGGGTAAAACTGAAACTGTAGAAGACTAAGACAG
* *
73496604 TAGGG-AAAACTGAAAACTTTAGAAGACTAAGACTG
1 TAGGGTAAAACTG-AAACTGTAGAAGACTAAGACAG
73496639 TAG
1 TAG
73496642 CTAGGATACG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 6 0.19
34 15 0.47
35 11 0.34
ACGTcount: A:0.43, C:0.11, G:0.25, T:0.21
Consensus pattern (35 bp):
TAGGGTAAAACTGAAACTGTAGAAGACTAAGACAG
Found at i:73500776 original size:79 final size:81
Alignment explanation
Indices: 73500640--73500822 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
73500630 TCGAATGATG
* *
73500640 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
73500704 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
73500719 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
73500781 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
73500799 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
73500823 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:73500838 original size:40 final size:40
Alignment explanation
Indices: 73500641--73500824 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
73500631 CGAATGATGT
* * * *
73500641 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
73500681 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
73500721 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73500759 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73500800 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
73500825 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:73500846 original size:79 final size:79
Alignment explanation
Indices: 73500693--73500857 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
73500683 GGACTAAGAT
* **
73500693 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
73500758 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
73500772 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
73500835 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
73500851 CCGAAGG
1 CCGAAGG
73500858 TACATGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:73508427 original size:32 final size:32
Alignment explanation
Indices: 73508391--73508474 Score: 150
Period size: 32 Copynumber: 2.6 Consensus size: 32
73508381 TTTTTTGTTA
73508391 CATGATTTTAGGAGTAAGTTAAGTGTTTGTGG
1 CATGATTTTAGGAGTAAGTTAAGTGTTTGTGG
73508423 CATGATTTTAGGAGTAAGTTAAGTGTTTGTGG
1 CATGATTTTAGGAGTAAGTTAAGTGTTTGTGG
* *
73508455 TATGATTTTTGGAGTAAGTT
1 CATGATTTTAGGAGTAAGTT
73508475 TAATAGGTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.25, C:0.02, G:0.30, T:0.43
Consensus pattern (32 bp):
CATGATTTTAGGAGTAAGTTAAGTGTTTGTGG
Found at i:73511869 original size:20 final size:19
Alignment explanation
Indices: 73511824--73511877 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
73511814 AAAAATATCA
73511824 AAAAATTATAAAAATTTTG
1 AAAAATTATAAAAATTTTG
* *
73511843 AAGAATTATTTAAAATTTT-
1 AAAAATTA-TAAAAATTTTG
*
73511862 ATAAAATTAAAAAAAT
1 A-AAAATTATAAAAAT
73511878 ATATTAATTG
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (19 bp):
AAAAATTATAAAAATTTTG
Found at i:73515087 original size:3 final size:3
Alignment explanation
Indices: 73515079--73515105 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
73515069 AGTATCAGTT
73515079 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
73515106 CCATCATCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:73516614 original size:9 final size:8
Alignment explanation
Indices: 73516602--73516652 Score: 50
Period size: 9 Copynumber: 6.0 Consensus size: 8
73516592 TTTAAAATTT
73516602 TAAAATATA
1 TAAAA-ATA
73516611 TAAAAAT-
1 TAAAAATA
*
73516618 TATAAATTA
1 TA-AAAATA
73516627 TTAAAAATA
1 -TAAAAATA
73516636 TAAAAATA
1 TAAAAATA
73516644 TTAAAAATA
1 -TAAAAATA
73516653 ACTTTTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
7 2 0.06
8 14 0.39
9 18 0.50
10 2 0.06
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
TAAAAATA
Found at i:73516624 original size:17 final size:18
Alignment explanation
Indices: 73516595--73516651 Score: 66
Period size: 17 Copynumber: 3.3 Consensus size: 18
73516585 TTATTTTTTT
*
73516595 AAAATTTTAAA-ATATATA
1 AAAATTATAAATATAT-TA
73516613 AAAATTATAAAT-TATTA
1 AAAATTATAAATATATTA
*
73516630 AAAA-TATAAAAATATTA
1 AAAATTATAAATATATTA
73516647 AAAAT
1 AAAAT
73516652 AACTTTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 6 0.18
17 15 0.44
18 13 0.38
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAATTATAAATATATTA
Found at i:73516652 original size:17 final size:18
Alignment explanation
Indices: 73516602--73516652 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 18
73516592 TTTAAAATTT
73516602 TAAAATATATAAAAAT-TA
1 TAAAATAT-TAAAAATATA
*
73516620 TAAATTATTAAAAATATA
1 TAAAATATTAAAAATATA
73516638 -AAAATATTAAAAATA
1 TAAAATATTAAAAATA
73516653 ACTTTTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
17 21 0.70
18 9 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAATATTAAAAATATA
Found at i:73517930 original size:25 final size:24
Alignment explanation
Indices: 73517882--73517930 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
73517872 TTTTAACAAA
* *
73517882 AAATAAAATTTTTACAACATAAAT
1 AAATAAAATTTTTACAAAAAAAAT
73517906 AAATAAAATTTTTAACAAAAAAAAT
1 AAATAAAATTTTT-ACAAAAAAAAT
73517931 CAATTTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
AAATAAAATTTTTACAAAAAAAAT
Found at i:73522605 original size:50 final size:49
Alignment explanation
Indices: 73522547--73522732 Score: 239
Period size: 50 Copynumber: 3.8 Consensus size: 49
73522537 TAGGTCGCAT
* * *
73522547 TGTAGTACTAAGTGCA-GCTACTATGCGTACCCGATAACTTCGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT-GGTCACGTG
* * *
73522597 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT-GGTCACGTG
* * * *
73522647 TGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCACATG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCACGTG
*
73522696 TGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
73522733 GTTTGGCTAC
Statistics
Matches: 119, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
49 41 0.34
50 62 0.52
51 16 0.13
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (49 bp):
TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCACGTG
Found at i:73522700 original size:99 final size:100
Alignment explanation
Indices: 73522547--73522735 Score: 283
Period size: 99 Copynumber: 1.9 Consensus size: 100
73522537 TAGGTCGCAT
* *
73522547 TGTAGTACTAAGTGCAGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGC
1 TGTAGTACTAAGTGCAGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGC
* *
73522612 AGGCTACTACGTGTATCAGATAGTTAGGTCACGTG
66 AGGCTACTACGCGTACCAGATAGTTAGGTCACGTG
* * *
73522647 TGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAA-TT-GGTCACATGTGTAGTACTAAGTG
1 TGTAGTACTAAGTGC-AGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTG
*
73522710 CAGGCTACTATGCGTACCAGATAGTT
65 CAGGCTACTACGCGTACCAGATAGTT
73522736 TGGCTACATA
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
99 44 0.55
100 17 0.21
101 19 0.24
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (100 bp):
TGTAGTACTAAGTGCAGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGC
AGGCTACTACGCGTACCAGATAGTTAGGTCACGTG
Found at i:73526090 original size:20 final size:20
Alignment explanation
Indices: 73526065--73526102 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
73526055 ATCAAGGCCA
73526065 CACGCCAGTGTGGATAGGGG
1 CACGCCAGTGTGGATAGGGG
* *
73526085 CACGCCCGTGTGGGTAGG
1 CACGCCAGTGTGGATAGG
73526103 CTATGTGGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.24, G:0.45, T:0.16
Consensus pattern (20 bp):
CACGCCAGTGTGGATAGGGG
Found at i:73528387 original size:48 final size:48
Alignment explanation
Indices: 73528179--73528448 Score: 173
Period size: 48 Copynumber: 5.5 Consensus size: 48
73528169 TGGGATCACA
* * * * * * * *
73528179 CATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCT
1 CATATCGATGCCGATGCCATGTCCCAAACATGGTATTATACGAGACCT
* * * * *
73528227 CATATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGGGATCT
1 C--ATATCGATGCCGATGCCATGTCCCAAACATGGTATTATACGAGACCT
* ** * * * * * *
73528277 CATATATCGATGCCAATGCCATGTTTCAGACATGGTCTTACATGGGATCT
1 C--ATATCGATGCCGATGCCATGTCCCAAACATGGTATTATACGAGACCT
* * *
73528327 CGTA-CTGGTGCCGATGTCATGTCCCAAACATGGTATTATACGAGACCT
1 CATATC-GATGCCGATGCCATGTCCCAAACATGGTATTATACGAGACCT
* * * * * * * **
73528375 CATCTCGTTGCCGATGCCATATCCCAGATATGGTCTTATACGGGGTCT
1 CATATCGATGCCGATGCCATGTCCCAAACATGGTATTATACGAGACCT
*
73528423 CATATCGATGCCAATGCCATGTCCCA
1 CATATCGATGCCGATGCCATGTCCCA
73528449 GCATGGTCTT
Statistics
Matches: 184, Mismatches: 34, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
47 1 0.01
48 91 0.49
49 1 0.01
50 91 0.49
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (48 bp):
CATATCGATGCCGATGCCATGTCCCAAACATGGTATTATACGAGACCT
Found at i:73528449 original size:48 final size:48
Alignment explanation
Indices: 73528135--73528461 Score: 343
Period size: 50 Copynumber: 6.7 Consensus size: 48
73528125 CACATAGTAA
* * * *
73528135 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGAT--CTCATATC
* *
73528185 GATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCTCATATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCTC--ATATC
*
73528235 GATGCCAATGCCATGTCCCAAACATGGTCTTACACGGGATCTCATATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCTC--ATATC
** * *
73528285 GATGCCAATGCCATGTTTCAGACATGGTCTTACATGGGATCTCGTA-C
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATATC
* * * * * * * * *
73528332 TGGTGCCGATGTCATGTCCCAAACATGGTATTATACGAGACCTCATCTC
1 -GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATATC
* * * * * *
73528381 GTTGCCGATGCCATATCCCAGATATGGTCTTATACGGGGTCTCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATATC
73528429 GATGCCAATGCCATGTCCCAG-CATGGTCTTACA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACA
73528462 TAGGACCTTA
Statistics
Matches: 233, Mismatches: 40, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
47 11 0.05
48 93 0.40
49 1 0.00
50 128 0.55
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATATC
Done.