Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 224 of 352
Found at i:73543377 original size:40 final size:40
Alignment explanation
Indices: 73543283--73543427 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
73543273 TACTCGAATG
* * *
73543283 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGCGACT
* * *
73543324 ACATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * *
73543364 ATATCCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
73543404 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
73543428 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 62 0.70
41 27 0.30
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:73545836 original size:40 final size:40
Alignment explanation
Indices: 73545799--73546103 Score: 363
Period size: 40 Copynumber: 7.7 Consensus size: 40
73545789 GCTACTCGTT
*
73545799 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
73545839 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
73545879 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
73545918 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
*
73545958 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* *
73545998 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * * * *
73546038 CAAATGCCTTC-AGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
73546079 CAAA-GCCTTCGGTACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73546104 CATCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
38 2 0.01
39 33 0.14
40 195 0.81
41 10 0.04
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:73545983 original size:119 final size:120
Alignment explanation
Indices: 73545799--73546103 Score: 386
Period size: 119 Copynumber: 2.5 Consensus size: 120
73545789 GCTACTCGTT
* *
73545799 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
73545863 GATTTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGAATTAGTATCTCGCA
65 GATTTAGTAACTCGCACAAATGCCTTCGGAGCTTAGCCCGGAATTAGTAACTCACA
**
73545918 CAAATGCCTTCGGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGATCTTAGTCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
73545981 GGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCACA
64 GGATTTAGTAACTCGCACAAATGCCTTCGGAGCTTAGCCCGGAATTAGTAACTCACA
* ** * * * * *
73546038 CAAATGCCTTCAGATCTTAGTCCGAATATGGTCACTTAGCACAAA-GCCTTCGGTACTTAGCCCG
1 CAAATGCCTTCGGATCTTAGTCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCG
73546102 GA
65 GA
73546104 CATCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
118 6 0.04
119 79 0.49
120 67 0.41
121 10 0.06
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (120 bp):
CAAATGCCTTCGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCACAAATGCCTTCGGAGCTTAGCCCGGAATTAGTAACTCACA
Found at i:73548170 original size:46 final size:46
Alignment explanation
Indices: 73548112--73548207 Score: 140
Period size: 46 Copynumber: 2.1 Consensus size: 46
73548102 GGGTGTTACA
* *
73548112 ATGTGAGCTAGTGTAAAACATGTCTGGGACATGCATTGGCCT-CGAG
1 ATGTAAGCTAGTGTAAAACATGTCTGGGACATGCATCGG-CTACGAG
* *
73548158 ATGTAAGCTAGTGTAAGACATGTCTTGGACATGCATCGGCTACGAG
1 ATGTAAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCTACGAG
73548204 ATGT
1 ATGT
73548208 GTCAATGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
45 2 0.04
46 43 0.96
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (46 bp):
ATGTAAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCTACGAG
Found at i:73560357 original size:50 final size:50
Alignment explanation
Indices: 73560281--73560725 Score: 425
Period size: 50 Copynumber: 8.9 Consensus size: 50
73560271 GTCATTGTAA
* *
73560281 GTCACCTGTGTAGTACTAGGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * *
73560331 GTCACATGTGTAGTACTAAGTCCAGGCTACTA--TGCTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTG-TACCAGATTGA--TAG
* * * * * * *
73560381 ATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
73560431 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * *
73560481 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * * ** ** *
73560532 ATCACGTGTGTAGTACTAAGTCCAGGCTACTATGCATACTC-G-TCAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTGA--TAG
* * * * * *
73560583 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
** *
73560633 GTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* *
73560683 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
73560726 GAGCTTCGGT
Statistics
Matches: 326, Mismatches: 58, Indels: 22
0.80 0.14 0.05
Matches are distributed among these distances:
48 5 0.02
49 8 0.02
50 224 0.69
51 84 0.26
52 5 0.02
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:73560631 original size:202 final size:200
Alignment explanation
Indices: 73560281--73560725 Score: 712
Period size: 202 Copynumber: 2.2 Consensus size: 200
73560271 GTCATTGTAA
* * * * * *
73560281 GTCACCTGTGTAGTACTAGGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTAATAGATCACATGTGTAGTA
* *
73560346 CTAAGTCCAGGCTACTATGCTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCTAC
66 CTAAGTCCAGGCTACTATGCTACCCGTCAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTAC
73560411 TACGTGTATCAGATGGTTAAGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT
131 TACGTGTATCAGATGGTTAAGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT
73560476 GATAG
196 GATAG
* * * *
73560481 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGATCACGTGTGTAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTAA--TAGATCACATGTGTAG
*
73560545 TACTAAGTCCAGGCTACTATGCATACTCGTCAACTTCGATCACGTGTGTAGTACTAAGTGCAGGC
64 TACTAAGTCCAGGCTACTATGC-TACCCGTCAACTTCGATCACGTGTGTAGTACTAAGTGCAGGC
** *
73560610 TACTACGTGTATCAGATGGTTAAGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAG
128 TACTACGTGTATCAGATGGTTAAGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG
73560675 ATTGATAG
193 ATTGATAG
73560683 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
73560726 GAGCTTCGGT
Statistics
Matches: 223, Mismatches: 18, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
199 3 0.01
200 36 0.16
201 35 0.16
202 149 0.67
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (200 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTAATAGATCACATGTGTAGTA
CTAAGTCCAGGCTACTATGCTACCCGTCAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTAC
TACGTGTATCAGATGGTTAAGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT
GATAG
Found at i:73569651 original size:43 final size:43
Alignment explanation
Indices: 73569585--73569747 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 43
73569575 AGCTCGTACA
* * * *
73569585 ATGCC-ATATCCCAGATATAGTCTTACATGTTATCGCATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCGCATATCG
* * * *
73569627 ATGCCACTGTCCCAGACAGGGTCTTACATGAAATCG-ATTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCGCA-TATCG
* * ** * *
73569670 ATGCCAATGTCCCAAACATGGTATTACACATAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCGCATAT-CG
73569713 ATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATC
73569748 ACATCTCAGT
Statistics
Matches: 95, Mismatches: 22, Indels: 7
0.77 0.18 0.06
Matches are distributed among these distances:
42 7 0.07
43 87 0.92
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCGCATATCG
Found at i:73573074 original size:38 final size:37
Alignment explanation
Indices: 73572988--73573086 Score: 101
Period size: 38 Copynumber: 2.6 Consensus size: 37
73572978 AAATCATAAT
*
73572988 AATTATAATTACCATAATTATAATAATGTTTGACAAAA
1 AATTATAATTA-CATAATTATAATAATATTTGACAAAA
* * **
73573026 AAATACAATTACAGTAATTATAATAATATTTGATC-TTA
1 AATTATAATTACA-TAATTATAATAATATTTGA-CAAAA
*
73573064 GATTATAATTACAATAATTATAA
1 AATTATAATTAC-ATAATTATAA
73573087 CAAGGATTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
37 2 0.04
38 46 0.92
39 2 0.04
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.38
Consensus pattern (37 bp):
AATTATAATTACATAATTATAATAATATTTGACAAAA
Found at i:73574087 original size:27 final size:27
Alignment explanation
Indices: 73574009--73574088 Score: 142
Period size: 27 Copynumber: 3.0 Consensus size: 27
73573999 TTATATTAAT
*
73574009 ATAATTTTAATGTGTCTAGTTTAGAAC
1 ATAATTTTAATGTGTCTAGTTTAGGAC
73574036 ATAATTTTAATGTGTCTAGTTTAGGAC
1 ATAATTTTAATGTGTCTAGTTTAGGAC
*
73574063 ATAATTTTAATGTGTCTAGTGTAGGA
1 ATAATTTTAATGTGTCTAGTTTAGGA
73574089 GAAATTTATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (27 bp):
ATAATTTTAATGTGTCTAGTTTAGGAC
Found at i:73577119 original size:49 final size:47
Alignment explanation
Indices: 73577007--73577182 Score: 140
Period size: 50 Copynumber: 3.6 Consensus size: 47
73576997 TAATGCCAAT
* * * * *
73577007 GCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAACCAAGTCGAC
* * *
73577054 GCCATGTCCAAGACATGGTCTTACACTGACT-ATCGAAACCGAGGTTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATC--AACC-AAGTCGAC
* * **** *
73577103 GCCATGTCCCAGACATGGTCTTACATTAGCTCTCA-CATATTTGGGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACT-G-ACTCATCA-A-CCAAGTCGAC
73577153 GCCATGTCCCAGACATGGTCTTACACTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGAC
73577183 ACCTCTATAC
Statistics
Matches: 103, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
46 3 0.03
47 28 0.27
48 3 0.03
49 32 0.31
50 33 0.32
51 3 0.03
52 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCATCAACCAAGTCGAC
Found at i:73577297 original size:92 final size:94
Alignment explanation
Indices: 73577194--73577368 Score: 248
Period size: 94 Copynumber: 1.9 Consensus size: 94
73577184 CCTCTATACG
* * *
73577194 TGCTGATGCCATATTCTAGACATGGTCTTACACT-GAT-ACAT-CTCGTAGCCGATGCATGTCCC
1 TGCTGATGCCATATCCTAGACATGGTCTTACACTGGATCACATAAT-GTAGCCGATGCATATCCC
*
73577256 AGACATGTCTTACATTAGCTTTCGTCTTAA
65 AGACATGTCTTACACTAGCTTTCGTCTTAA
* * * *
73577286 TGCTGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATATCCCA
1 TGCTGATGCCATATCCTAGACATGGTCTTACACTGGATCACATAATGTAGCCGATGCATATCCCA
73577351 GACATGTCTTACACTAGC
66 GACATGTCTTACACTAGC
73577369 ACACAAATAA
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
92 32 0.44
93 2 0.03
94 37 0.51
95 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (94 bp):
TGCTGATGCCATATCCTAGACATGGTCTTACACTGGATCACATAATGTAGCCGATGCATATCCCA
GACATGTCTTACACTAGCTTTCGTCTTAA
Found at i:73583574 original size:27 final size:27
Alignment explanation
Indices: 73583496--73583575 Score: 142
Period size: 27 Copynumber: 3.0 Consensus size: 27
73583486 TTATATTAAT
*
73583496 ATAATTTTAATGTGTCTAGTTTAGAAC
1 ATAATTTTAATGTGTCTAGTTTAGGAC
73583523 ATAATTTTAATGTGTCTAGTTTAGGAC
1 ATAATTTTAATGTGTCTAGTTTAGGAC
*
73583550 ATAATTTTAATGTGTCTAGTGTAGGA
1 ATAATTTTAATGTGTCTAGTTTAGGA
73583576 AAAATTTATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (27 bp):
ATAATTTTAATGTGTCTAGTTTAGGAC
Found at i:73586740 original size:27 final size:27
Alignment explanation
Indices: 73586710--73586771 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
73586700 CCATTGCAAG
*
73586710 ATTCACCACAGAGGCTATCCCTTTATA
1 ATTCACCACAAAGGCTATCCCTTTATA
* * * *
73586737 ATTCGCCACAAAGGCTTTTCTTTTATA
1 ATTCACCACAAAGGCTATCCCTTTATA
*
73586764 TTTCACCA
1 ATTCACCA
73586772 TAAAAGTTTT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.35
Consensus pattern (27 bp):
ATTCACCACAAAGGCTATCCCTTTATA
Found at i:73593276 original size:31 final size:31
Alignment explanation
Indices: 73593238--73593299 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
73593228 CTGCAAAAGG
*
73593238 ATGCTCTGAGGTACCTGGCTATGATTTTCGT
1 ATGCTCTGAGGTACATGGCTATGATTTTCGT
*
73593269 ATGCTCTGAGGTACATGTCTATGATTTTCGT
1 ATGCTCTGAGGTACATGGCTATGATTTTCGT
73593300 GATACATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.40
Consensus pattern (31 bp):
ATGCTCTGAGGTACATGGCTATGATTTTCGT
Found at i:73609488 original size:40 final size:40
Alignment explanation
Indices: 73609444--73609662 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
73609434 CGCTCGAATA
* *
73609444 CCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
*
73609484 CCTTCGGGACTTAGCCCGAAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
73609524 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
73609564 CCTTCGGGACTTAGCCCGGATA-TGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
* * * *
73609604 CCTTCGGGACTTAGCCAGGAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
73609644 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73609663 TTATCATCCA
Statistics
Matches: 165, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 2 0.01
40 162 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:73609662 original size:80 final size:80
Alignment explanation
Indices: 73609405--73609662 Score: 328
Period size: 80 Copynumber: 3.2 Consensus size: 80
73609395 AAGCCAAGTA
* * * * * * *
73609405 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATACCTTCGGGACATAGCCCGGATA-T
1 CCTTCGGGACTTAGCCCGGATAT-GGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACT
73609467 AGTAACTCA-CACAAATG
64 AGTAACT-AGCACAAATG
* *
73609484 CCTTCGGGACTTAGCCC-GAAACTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTA
1 CCTTCGGGACTTAGCCCGGATA-TGGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTA
*
73609548 GTAACTCGCACAAATG
65 GTAACTAGCACAAATG
*
73609564 CCTTCGGGACTTAGCCCGGATATGGTAACTCGCACAAATGCCTTCGGGACTTAGCCAGGAACTAG
1 CCTTCGGGACTTAGCCCGGATATGGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
* *
73609629 TCACTAGCGCAAATG
66 TAACTAGCACAAATG
73609644 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73609663 TTATCATCCA
Statistics
Matches: 157, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
79 17 0.11
80 137 0.87
81 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATGGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
TAACTAGCACAAATG
Found at i:73622961 original size:35 final size:35
Alignment explanation
Indices: 73622913--73622999 Score: 102
Period size: 35 Copynumber: 2.5 Consensus size: 35
73622903 ACTGACTTTT
* *
73622913 AAAGAGTTAGGATAGACCAATCTATGCAAACCTTAA
1 AAAG-GTTGGGATAGACCAATCTAAGCAAACCTTAA
* * **
73622949 AAAGGTTGGGATAGATCAATCTAAGGAAATTTTAA
1 AAAGGTTGGGATAGACCAATCTAAGCAAACCTTAA
*
73622984 AAAGATTGGGATAGAC
1 AAAGGTTGGGATAGAC
73623000 TTTGTATGTG
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
35 39 0.91
36 4 0.09
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (35 bp):
AAAGGTTGGGATAGACCAATCTAAGCAAACCTTAA
Found at i:73627339 original size:32 final size:32
Alignment explanation
Indices: 73627303--73627366 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
73627293 CCCATCACAG
* *
73627303 TATCAATTGGGCCTAGCCCATCTTAGAATCAA
1 TATCAATTGGGCCTAGCCCATATCAGAATCAA
*
73627335 TATCAGTTGGGCCTAGCCCATATCAGAATCAA
1 TATCAATTGGGCCTAGCCCATATCAGAATCAA
73627367 ACCCATATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (32 bp):
TATCAATTGGGCCTAGCCCATATCAGAATCAA
Found at i:73627798 original size:22 final size:23
Alignment explanation
Indices: 73627767--73627825 Score: 86
Period size: 22 Copynumber: 2.7 Consensus size: 23
73627757 AATATGTTTA
*
73627767 GCACATAGCCATAAT-TAGGTTG
1 GCACAAAGCCATAATGTAGGTTG
*
73627789 GCACAGAGCCAT-ATGTAGGTTG
1 GCACAAAGCCATAATGTAGGTTG
73627811 GCACAAAGCCATAAT
1 GCACAAAGCCATAAT
73627826 CAGAATAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (23 bp):
GCACAAAGCCATAATGTAGGTTG
Found at i:73628028 original size:41 final size:41
Alignment explanation
Indices: 73627966--73628088 Score: 176
Period size: 41 Copynumber: 3.0 Consensus size: 41
73627956 TAAAAGCCAC
* *
73627966 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGATCATCAAGCAACCATGCGATCCTCAAT
* *
73628007 CGGTAGATCCACGATCATCAAGAAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATCATCAAGCAACCATGCGATCCTCAAT
* *
73628048 CGATGGATCCAC-AGTCATCAAACAACCATGCGATCCTCAAT
1 CGGTGGATCCACGA-TCATCAAGCAACCATGCGATCCTCAAT
73628089 TTCTTCCCCC
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 1 0.01
41 72 0.99
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (41 bp):
CGGTGGATCCACGATCATCAAGCAACCATGCGATCCTCAAT
Found at i:73628368 original size:27 final size:27
Alignment explanation
Indices: 73628338--73628400 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
73628328 AGGGTGTCTT
73628338 GGTAAATTTAAAAACTAAGGGTATTTC
1 GGTAAATTTAAAAACTAAGGGTATTTC
* ** *
73628365 GGTAATTTTGCAAACTAATGGTATTTC
1 GGTAAATTTAAAAACTAAGGGTATTTC
**
73628392 TATAAATTT
1 GGTAAATTT
73628401 TGAAAGTCAA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.40
Consensus pattern (27 bp):
GGTAAATTTAAAAACTAAGGGTATTTC
Found at i:73628442 original size:27 final size:27
Alignment explanation
Indices: 73628349--73628524 Score: 119
Period size: 27 Copynumber: 6.5 Consensus size: 27
73628339 GTAAATTTAA
* ** *
73628349 AAACTAAGGGTATTTCGGTAATTTTGC
1 AAACCAAGGGTATTTTTGTAATTTTGT
* * * *
73628376 AAACTAATGGTATTTCTATAAATTTTG-
1 AAACCAAGGGTATTTTTGT-AATTTTGT
* *
73628403 AAAGTCAAAGGTATTTTTGTAATTTTGT
1 AAA-CCAAGGGTATTTTTGTAATTTTGT
* *
73628431 AAATCAGGGGTA-TTTTGATAATTTTGCT
1 AAACCAAGGGTATTTTTG-TAATTTTG-T
* *
73628459 AATA--GAGGGTATTTTGGTAATTTTGT
1 AA-ACCAAGGGTATTTTTGTAATTTTGT
* * *
73628485 AAACCAAGGGCATTTAT-TAATTTTAT
1 AAACCAAGGGTATTTTTGTAATTTTGT
73628511 AAACCAAGGGTATT
1 AAACCAAGGGTATT
73628525 GCAGTAATTC
Statistics
Matches: 121, Mismatches: 19, Indels: 19
0.76 0.12 0.12
Matches are distributed among these distances:
25 1 0.01
26 29 0.24
27 62 0.51
28 28 0.23
29 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTTTGTAATTTTGT
Found at i:73633785 original size:22 final size:21
Alignment explanation
Indices: 73633757--73633821 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
73633747 GCAAATACGT
73633757 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
73633779 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
73633801 TTGGCACAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
73633822 AATAATTGGC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
21 3 0.09
22 30 0.86
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:73634026 original size:41 final size:41
Alignment explanation
Indices: 73633981--73634080 Score: 128
Period size: 41 Copynumber: 2.4 Consensus size: 41
73633971 GTTGTTAAGC
* * * *
73633981 AACCATGCGATCCTTAATTGGTGGATCAATAGTCGTCAAGA
1 AACCATGCGATCCTCAATCGGTGGATCAACAGTCATCAAGA
* *
73634022 AACCATGCGATCCTCAATCGGTGGATCCACAGTCATCAAGC
1 AACCATGCGATCCTCAATCGGTGGATCAACAGTCATCAAGA
* *
73634063 AACCATGTGATTCTCAAT
1 AACCATGCGATCCTCAAT
73634081 TTCTTCCCCC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (41 bp):
AACCATGCGATCCTCAATCGGTGGATCAACAGTCATCAAGA
Found at i:73634407 original size:54 final size:54
Alignment explanation
Indices: 73634345--73634705 Score: 183
Period size: 54 Copynumber: 6.7 Consensus size: 54
73634335 ATCTACAAAC
* * * *
73634345 CAAGGGTATTTCGGTAATTTTG-CAACCAATGGTATTTGTATAATTTTTAAAAGT
1 CAAGGGTATTTCGGTAATTTTGTAAACCAAGGGTATTTCTATAATTTTCAAAA-T
* ** ** * * *
73634399 TAAGGGTATTTTTGTAATTTTGTAAATTAGGGGTATTTCTGTAATTTTCCAAAT
1 CAAGGGTATTTCGGTAATTTTGTAAACCAAGGGTATTTCTATAATTTTCAAAAT
** * *
73634453 CAAGGGTATTTCGGTAATTTTCCAAATCAAGGGTATTT-TGGTAATTTT-ATAAAT
1 CAAGGGTATTTCGGTAATTTTGTAAACCAAGGGTATTTCT-ATAATTTTCA-AAAT
* * ** ** * * **
73634507 CGAGGGTATTTAGGTAATTTTACAAGTCGAGGGTATTTCGATAATTTT-ACAGGT
1 CAAGGGTATTTCGGTAATTTTGTAAACCAAGGGTATTTCTATAATTTTCA-AAAT
* ** ** *
73634561 CAAGGGTATTTTGGTAATTTCATAAA-TTAGTGGTATTT-TGGTAATTTTACAAAAT
1 CAAGGGTATTTCGGTAATTTTGTAAACCAAG-GGTATTTCT-ATAATTTT-CAAAAT
* * * *
73634616 -AGGGGTATTT-GGTAATTTTGCT-AATCGAGGGTATTT-TGGTAATTTT-ATAAA-
1 CAAGGGTATTTCGGTAATTTTG-TAAACCAAGGGTATTTCT-ATAATTTTCA-AAAT
*
73634667 CTGAGGGTA-TTCAGG-AATTTTGTAAACCAAGGGTATTTC
1 C-AAGGGTATTTC-GGTAATTTTGTAAACCAAGGGTATTTC
73634706 AGTAATTCTA
Statistics
Matches: 240, Mismatches: 50, Indels: 34
0.74 0.15 0.10
Matches are distributed among these distances:
51 1 0.00
52 6 0.03
53 54 0.22
54 155 0.65
55 23 0.10
56 1 0.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
CAAGGGTATTTCGGTAATTTTGTAAACCAAGGGTATTTCTATAATTTTCAAAAT
Found at i:73634409 original size:28 final size:26
Alignment explanation
Indices: 73634346--73634712 Score: 126
Period size: 27 Copynumber: 13.7 Consensus size: 26
73634336 TCTACAAACC
* ** **
73634346 AAGGGTATTTCGGTAATTTTGCAACC
1 AAGGGTATTTCTGTAATTTTTAAATT
* * *
73634372 AATGGTATTTGTATAATTTTTAAAAGTT
1 AAGGGTATTTCTGTAATTTTT-AAA-TT
*
73634400 AAGGGTATTTTTGTAATTTTGTAAATT
1 AAGGGTATTTCTGTAATTTT-TAAATT
* * *
73634427 AGGGGTATTTCTGTAATTTTCCAAATC
1 AAGGGTATTTCTGTAATTTT-TAAATT
* * *
73634454 AAGGGTATTTCGGTAATTTTCCAAATC
1 AAGGGTATTTCTGTAATTTT-TAAATT
*
73634481 AAGGGTATTT-TGGTAATTTTATAAATC
1 AAGGGTATTTCT-GTAATTTT-TAAATT
* ** *
73634508 GAGGGTATTTAGGTAA-TTTTACAAGTC
1 AAGGGTATTTCTGTAATTTTTA-AA-TT
* * *
73634535 GAGGGTATTTC-GATAA-TTTTACAGGTC
1 AAGGGTATTTCTG-TAATTTTTA-A-ATT
*
73634562 AAGGGTATTT-TGGTAATTTCATAAATT
1 AAGGGTATTTCT-GTAATTT-TTAAATT
* *
73634589 -AGTGGTATTT-TGGTAATTTTACAAAAT
1 AAG-GGTATTTCT-GTAATTTT-TAAATT
* * *
73634616 AGGGGTATTT-GGTAATTTTGCT-AATC
1 AAGGGTATTTCTGTAATTTT--TAAATT
* *
73634642 GAGGGTATTT-TGGTAATTTTATAAACT
1 AAGGGTATTTCT-GTAATTTT-TAAATT
* * * **
73634669 GAGGGTA-TTCAGGAATTTTGTAAACC
1 AAGGGTATTTCTGTAATTTT-TAAATT
*
73634695 AAGGGTATTTCAGTAATT
1 AAGGGTATTTCTGTAATT
73634713 CTACCCTACA
Statistics
Matches: 270, Mismatches: 50, Indels: 41
0.75 0.14 0.11
Matches are distributed among these distances:
25 2 0.01
26 63 0.23
27 177 0.66
28 25 0.09
29 3 0.01
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.41
Consensus pattern (26 bp):
AAGGGTATTTCTGTAATTTTTAAATT
Found at i:73634443 original size:81 final size:81
Alignment explanation
Indices: 73634348--73634666 Score: 310
Period size: 81 Copynumber: 4.0 Consensus size: 81
73634338 TACAAACCAA
* * * * *
73634348 GGGTATTTCGGTAATTTTGCAACCAATGGTATTT-GTATAATTTTTAAAAGTTAAGGGTATTTTT
1 GGGTATTTCGGTAATTTTACAATCAAGGGTATTTCG-ATAATTTTTAAAAGTCAAGGGTATTTTG
*
73634412 GTAATTTTGTAAATTAG
65 GTAATTTTATAAATTAG
* * * **
73634429 GGGTATTTCTGTAATTTTCCAAATCAAGGGTATTTCGGTAATTTTCCAAA-TCAAGGGTATTTTG
1 GGGTATTTCGGTAATTTTAC-AATCAAGGGTATTTCGATAATTTTTAAAAGTCAAGGGTATTTTG
*
73634493 GTAATTTTATAAA-TCG
65 GTAATTTTATAAATTAG
* * * *
73634509 AGGGTATTTAGGTAATTTTACAAGTCGAGGGTATTTCGATAA-TTTTACAGGTCAAGGGTATTTT
1 -GGGTATTTCGGTAATTTTACAA-TCAAGGGTATTTCGATAATTTTTAAAAGTCAAGGGTATTTT
*
73634573 GGTAATTTCATAAATTAG
64 GGTAATTTTATAAATTAG
* * * * *** *
73634591 TGGTATTTTGGTAATTTTACAAAAT-AGGGGTATTT-GGTAATTTTGCTAA-TCGAGGGTATTTT
1 GGGTATTTCGGTAATTTTAC--AATCAAGGGTATTTCGATAATTTTTAAAAGTCAAGGGTATTTT
73634653 GGTAATTTTATAAA
64 GGTAATTTTATAAA
73634667 CTGAGGGTAT
Statistics
Matches: 196, Mismatches: 33, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
80 37 0.19
81 131 0.67
82 25 0.13
83 3 0.02
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (81 bp):
GGGTATTTCGGTAATTTTACAATCAAGGGTATTTCGATAATTTTTAAAAGTCAAGGGTATTTTGG
TAATTTTATAAATTAG
Found at i:73634672 original size:27 final size:26
Alignment explanation
Indices: 73634399--73634704 Score: 206
Period size: 27 Copynumber: 11.4 Consensus size: 26
73634389 TTTTAAAAGT
* *
73634399 TAAGGGTATTTTTGTAATTTTGTAAA
1 TAAGGGTATTTTGGTAATTTTATAAA
* **
73634425 TTAGGGGTATTTCT-GTAATTTTCCAAA
1 -TAAGGGTATTT-TGGTAATTTTATAAA
* **
73634452 TCAAGGGTATTTCGGTAATTTTCCAAA
1 T-AAGGGTATTTTGGTAATTTTATAAA
73634479 TCAAGGGTATTTTGGTAATTTTATAAA
1 T-AAGGGTATTTTGGTAATTTTATAAA
* * * *
73634506 TCGAGGGTATTTAGGTAATTTTACAAG
1 T-AAGGGTATTTTGGTAATTTTATAAA
* * * * **
73634533 TCGAGGGTATTTCGATAATTTTACAGG
1 T-AAGGGTATTTTGGTAATTTTATAAA
*
73634560 TCAAGGGTATTTTGGTAATTTCATAAA
1 T-AAGGGTATTTTGGTAATTTTATAAA
* *
73634587 TTAGTGGTATTTTGGTAATTTTACAAAA
1 TAAG-GGTATTTTGGTAATTTTA-TAAA
* *
73634615 TAGGGGTA-TTTGGTAATTTTGCT-AA
1 TAAGGGTATTTTGGTAATTTT-ATAAA
*
73634640 TCGAGGGTATTTTGGTAATTTTATAAA
1 T-AAGGGTATTTTGGTAATTTTATAAA
* ** *
73634667 CTGAGGGTATTCAGG-AATTTTGTAAA
1 -TAAGGGTATTTTGGTAATTTTATAAA
*
73634693 CCAAGGGTATTT
1 -TAAGGGTATTT
73634705 CAGTAATTCT
Statistics
Matches: 231, Mismatches: 38, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
25 3 0.01
26 40 0.17
27 181 0.78
28 7 0.03
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (26 bp):
TAAGGGTATTTTGGTAATTTTATAAA
Found at i:73638006 original size:25 final size:24
Alignment explanation
Indices: 73637989--73638083 Score: 120
Period size: 25 Copynumber: 3.8 Consensus size: 24
73637979 CTTTTTTAAT
73637989 AACTGGGGCAAAGCCCTTTT-TGATA
1 AACTGGGGCAAAGCCCTTTTCT--TA
* *
73638014 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTC-TTA
73638039 AACTGGGGCAAAGCCCTTTTCGTTA
1 AACTGGGGCAAAGCCCTTTTC-TTA
*
73638064 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
73638084 AGTACTTCCT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (24 bp):
AACTGGGGCAAAGCCCTTTTCTTA
Found at i:73638008 original size:24 final size:24
Alignment explanation
Indices: 73637962--73638083 Score: 118
Period size: 25 Copynumber: 4.9 Consensus size: 24
73637952 GCTTTATCAT
** * *
73637962 ATAACTGGAGGCCTAGCCTTTTTTA
1 ATAACTGG-GGCAAAGCCCTTTTTG
73637987 ATAACTGGGGCAAAGCCCTTTTTG
1 ATAACTGGGGCAAAGCCCTTTTTG
* *
73638011 ATAAACTAGGGCAAAGCCCTTTTCG
1 AT-AACTGGGGCAAAGCCCTTTTTG
* *
73638036 GTAAACTGGGGCAAAGCCCTTTTCG
1 AT-AACTGGGGCAAAGCCCTTTTTG
* *
73638061 TTAAACTGGGGCATAGCCCTTTT
1 AT-AACTGGGGCAAAGCCCTTTT
73638084 AGTACTTCCT
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
24 14 0.16
25 72 0.84
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCCTTTTTG
Found at i:73638043 original size:50 final size:50
Alignment explanation
Indices: 73637989--73638083 Score: 154
Period size: 50 Copynumber: 1.9 Consensus size: 50
73637979 CTTTTTTAAT
*
73637989 AACTGGGGCAAAGCCCTTTTTGATAAACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATAAACTAGGGCAAAGCCCTTTTCGGTA
* * *
73638039 AACTGGGGCAAAGCCCTTTTCGTTAAACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTTCGATAAACTAGGGCAAAGCCCTTTT
73638084 AGTACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (50 bp):
AACTGGGGCAAAGCCCTTTTCGATAAACTAGGGCAAAGCCCTTTTCGGTA
Found at i:73638316 original size:27 final size:27
Alignment explanation
Indices: 73638286--73638529 Score: 265
Period size: 27 Copynumber: 9.0 Consensus size: 27
73638276 GGGGCAAAAT
* * *
73638286 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
73638313 GGTAATTCTACCCTGCAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
73638340 GGTATTTCTACCTTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
73638367 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * * *
73638394 AGTAATTTTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73638421 GGTAATTCTACCCTACAAGGTTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73638448 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
73638475 GGTAATTATACTCT-GAAGGTGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* * *
73638502 GATAATTCTACCTTACAAAGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
73638529 G
1 G
73638530 ATATTTTACA
Statistics
Matches: 177, Mismatches: 38, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 4 0.02
27 170 0.96
28 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:73638650 original size:27 final size:26
Alignment explanation
Indices: 73638532--73638724 Score: 154
Period size: 27 Copynumber: 7.2 Consensus size: 26
73638522 GTATTTCGAT
* * * *
73638532 ATTTTACAAATCGAGAGTATTTCGATA
1 ATTTTACAAA-CCAGGGTATTTTGGTA
* *
73638559 ATTTCACAAATCAGTGGTATTTTGGTA
1 ATTTTACAAACCAG-GGTATTTTGGTA
* * *
73638586 ATTTTACAAGCTAGGGGTATTTTGCTA
1 ATTTTACAAACCA-GGGTATTTTGGTA
*
73638613 ATTTTACAAACCACGGGTATTTTAGTA
1 ATTTTACAAACCA-GGGTATTTTGGTA
73638640 ATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCA-GGGTATTTTGGTA
* *** *
73638667 A-TTTACTTATTGAGGGCATTTTGGTA
1 ATTTTAC-AAACCAGGGTATTTTGGTA
** *
73638693 ATTTTGTAAACCAAGGGTATTTTAGTA
1 ATTTTACAAACC-AGGGTATTTTGGTA
73638720 ATTTT
1 ATTTT
73638725 GTAAATCGAG
Statistics
Matches: 130, Mismatches: 31, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
26 21 0.16
27 108 0.83
28 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (26 bp):
ATTTTACAAACCAGGGTATTTTGGTA
Found at i:73638695 original size:53 final size:53
Alignment explanation
Indices: 73638577--73638723 Score: 152
Period size: 53 Copynumber: 2.8 Consensus size: 53
73638567 AATCAGTGGT
* * * *
73638577 ATTTTGGTAATTTTACAAGCTAGGGGTATTTTGCTAATTTTACAAACCACGGGT
1 ATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAA-TTTACAAACCACGGGC
* * ***
73638631 ATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTACTTATTGA-GGGC
1 ATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTAC-AAACCACGGGC
** * *
73638684 ATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTT
1 ATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
73638724 TGTAAATCGA
Statistics
Matches: 78, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
53 43 0.55
54 35 0.45
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.42
Consensus pattern (53 bp):
ATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTACAAACCACGGGC
Found at i:73638772 original size:27 final size:27
Alignment explanation
Indices: 73638717--73638964 Score: 365
Period size: 27 Copynumber: 9.2 Consensus size: 27
73638707 GGGTATTTTA
* *
73638717 GTAATTTTGTAAATCGA-GGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
73638743 GTAATTCTATAAATCGAAGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
73638770 GTAATTCTGTAAATCGAGGATAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
73638797 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
73638824 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
73638851 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
73638878 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
73638905 GTAATTCTATAAATCGAGCGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
73638932 GTAATTCTGTAAAAT-GAGGGTAAAATG
1 GTAATTCTGT-AAATCGAGGGTAAAATG
73638959 GTAATT
1 GTAATT
73638965 TGACAAATTA
Statistics
Matches: 201, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
26 15 0.07
27 182 0.91
28 4 0.02
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:73638848 original size:81 final size:81
Alignment explanation
Indices: 73638717--73638965 Score: 421
Period size: 81 Copynumber: 3.1 Consensus size: 81
73638707 GGGTATTTTA
* *
73638717 GTAATTTTGTAAATCGA-GGTAAAACGGTAATTCTATAAATCGAAGGTAAAATGGTAATTCTGTA
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
*
73638781 AATCGAGGATAAAATG
66 AATCGAGGGTAAAATG
*
73638797 GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
73638862 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* *
73638878 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGCGTAAAACGGTAATTCTGTA
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGT-
73638943 AAAT-GAGGGTAAAATG
65 AAATCGAGGGTAAAATG
73638959 GTAATTT
1 GTAATTT
73638966 GACAAATTAA
Statistics
Matches: 160, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
80 16 0.10
81 140 0.88
82 4 0.03
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
AATCGAGGGTAAAATG
Found at i:73642261 original size:18 final size:18
Alignment explanation
Indices: 73642238--73642273 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
73642228 AAATTATGTT
73642238 AGACAACTTGTGCTACTC
1 AGACAACTTGTGCTACTC
73642256 AGACAACTTGTGCTACTC
1 AGACAACTTGTGCTACTC
73642274 GATTTTGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (18 bp):
AGACAACTTGTGCTACTC
Found at i:73643272 original size:68 final size:67
Alignment explanation
Indices: 73643200--73643385 Score: 175
Period size: 67 Copynumber: 2.8 Consensus size: 67
73643190 CATCATGTGT
* * * *
73643200 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
73643262 ATGTAG
62 ATGTAG
** * *
73643268 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
73643333 AG
66 AG
* * * * *
73643335 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGG-TACTAAGTG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATAC-AAGTG
73643386 TTCACCATGT
Statistics
Matches: 100, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
64 20 0.20
65 9 0.09
66 26 0.26
67 32 0.32
68 13 0.13
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.23
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:73643305 original size:64 final size:64
Alignment explanation
Indices: 73643224--73643395 Score: 193
Period size: 67 Copynumber: 2.7 Consensus size: 64
73643214 AGACATTATG
* *
73643224 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
73643288 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73643353 AA
63 AA
* * * * *
73643355 AT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGT
73643396 GTGCAAGAGA
Statistics
Matches: 87, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
63 9 0.10
64 21 0.24
65 8 0.09
66 17 0.20
67 32 0.37
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73652418 original size:46 final size:46
Alignment explanation
Indices: 73652367--73652482 Score: 148
Period size: 46 Copynumber: 2.5 Consensus size: 46
73652357 ACAAGGGCTG
73652367 GTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACG-TAAG-CTA
1 GTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGACGAT-AGTC-A
* *
73652413 GTGTAAGATATGTCTGGGACATGCATCGGCTACGAGATGATAGTCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGATAGTCA
*
73652459 GTGTAAGACCATGTCTGGAACATG
1 GTGTAAGA-CATGTCTGGGACATG
73652483 GAAATGACTT
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
45 2 0.03
46 45 0.73
47 15 0.24
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGATAGTCA
Found at i:73652521 original size:140 final size:141
Alignment explanation
Indices: 73652268--73652535 Score: 303
Period size: 140 Copynumber: 1.9 Consensus size: 141
73652258 TTTGTGTGTG
* *
73652268 AGCTAGTTTAAGACATGTCTCGGACATGCATCAGGCACATTATGAGAGTCAGTGCAAGACCATAT
1 AGCTAGTGTAAGACATGTCTCGGACATGCATCAGGCACATGATGAGAGTCAGTGCAAGACCATAT
* ** * * **
73652333 CTGGGACATGTCATCGACATTCAGACAAGGGCTGGTGTAAGACATGTCTGGGACAT-GCATCGGC
66 CTGGAACATGAAATCGACATTCAGACAAGAGCTAGTGTAAGACATGTCTAAGACATGGCATCGGC
73652397 CTCGAGACGTA
131 CTCGAGACGTA
* * * *
73652408 AGCTAGTGTAAGATATGTCTGGGACATGCATC-GGCTACGA-GATGATAGTCAGTGTAAGACCAT
1 AGCTAGTGTAAGACATGTCTCGGACATGCATCAGGC-AC-ATGATGAGAGTCAGTGCAAGACCAT
* * * * *
73652471 GTCTGGAACATGGAAAT-GAC-TTGAGATATGAGCTAGTGTAAGACTGTGTCTAAGACATGGCAT
64 ATCTGGAACAT-GAAATCGACATTCAGACAAGAGCTAGTGTAAGAC-ATGTCTAAGACATGGCAT
73652534 CG
127 CG
73652536 ACACCTTACC
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
139 22 0.21
140 73 0.70
141 10 0.10
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (141 bp):
AGCTAGTGTAAGACATGTCTCGGACATGCATCAGGCACATGATGAGAGTCAGTGCAAGACCATAT
CTGGAACATGAAATCGACATTCAGACAAGAGCTAGTGTAAGACATGTCTAAGACATGGCATCGGC
CTCGAGACGTA
Found at i:73661339 original size:12 final size:12
Alignment explanation
Indices: 73661322--73661348 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
73661312 ACCACATCAT
73661322 TTAATCAAACCA
1 TTAATCAAACCA
73661334 TTAATCAAACCA
1 TTAATCAAACCA
73661346 TTA
1 TTA
73661349 CAAGCTGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (12 bp):
TTAATCAAACCA
Found at i:73676493 original size:41 final size:41
Alignment explanation
Indices: 73676432--73676581 Score: 210
Period size: 41 Copynumber: 3.6 Consensus size: 41
73676422 ATTAGTGGCA
* * *
73676432 TTTTTTAAAAAGCGCTGCTAATGCTCAAACCTATAGCGGTGC
1 TTTTTTAAAAA-CGCCGCTAATGCTCAGACCTATAGCGGCGC
* *
73676474 TTTTTTAAAAACGCCGCTAATTCTCAGACCTATAGGGGCGC
1 TTTTTTAAAAACGCCGCTAATGCTCAGACCTATAGCGGCGC
*
73676515 TTTTTGAAAAACGCCGCTAATGCTCAGACCTATAGCGGCGC
1 TTTTTTAAAAACGCCGCTAATGCTCAGACCTATAGCGGCGC
* *
73676556 TTTTTGAAAAAACGCTGCTAATGCTC
1 TTTTT-TAAAAACGCCGCTAATGCTC
73676582 GATTTATAGC
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
41 68 0.70
42 29 0.30
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (41 bp):
TTTTTTAAAAACGCCGCTAATGCTCAGACCTATAGCGGCGC
Found at i:73676601 original size:41 final size:40
Alignment explanation
Indices: 73676432--73676601 Score: 189
Period size: 41 Copynumber: 4.2 Consensus size: 40
73676422 ATTAGTGGCA
* * *
73676432 TTTTTTAAAAAGCGCTGCTAATGCTCAAACCTATAGCGGTG
1 TTTTTTAAAAA-CGCCGCTAATGCTCAGACCTATAGCGGCG
* *
73676473 CTTTTTTAAAAACGCCGCTAATTCTCAGACCTATAGGGGCG
1 -TTTTTTAAAAACGCCGCTAATGCTCAGACCTATAGCGGCG
*
73676514 CTTTTTGAAAAACGCCGCTAATGCTCAGACCTATAGCGGCG
1 -TTTTTTAAAAACGCCGCTAATGCTCAGACCTATAGCGGCG
* * ** *
73676555 CTTTTTGAAAAAACGCTGCTAATGCTC-GATTTATAGCTGCG
1 -TTTTT-TAAAAACGCCGCTAATGCTCAGACCTATAGCGGCG
73676596 TTTTTT
1 TTTTTT
73676602 CCAAAAGCGC
Statistics
Matches: 113, Mismatches: 14, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
40 5 0.04
41 79 0.70
42 29 0.26
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (40 bp):
TTTTTTAAAAACGCCGCTAATGCTCAGACCTATAGCGGCG
Found at i:73676601 original size:82 final size:82
Alignment explanation
Indices: 73676432--73676612 Score: 213
Period size: 82 Copynumber: 2.2 Consensus size: 82
73676422 ATTAGTGGCA
* * * *
73676432 TTTTTTAAAAAGCGCTGCTAATGCTCAAACCTATAGCGGTGCTTTTTTAAAAACGCCGCTAATTC
1 TTTTTTAAAAAGCGCCGCTAATGCTCAAACCTATAGCGGCGCTTTTTAAAAAACGCCGCTAATGC
*
73676497 TCAGACCTATAGGGGCG
66 TCAGACCTATAGCGGCG
* * *
73676514 CTTTTTGAAAAA-CGCCGCTAATGCTCAGACCTATAGCGGCGCTTTTTGAAAAAACGCTGCTAAT
1 -TTTTTTAAAAAGCGCCGCTAATGCTCAAACCTATAGCGGCGCTTTTT-AAAAAACGCCGCTAAT
** *
73676578 GCTC-GATTTATAGCTGCG
64 GCTCAGACCTATAGCGGCG
*
73676596 TTTTTTCCAAAAGCGCC
1 TTTTTT-AAAAAGCGCC
73676613 ACAAAAACAT
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
81 5 0.06
82 46 0.56
83 31 0.38
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (82 bp):
TTTTTTAAAAAGCGCCGCTAATGCTCAAACCTATAGCGGCGCTTTTTAAAAAACGCCGCTAATGC
TCAGACCTATAGCGGCG
Found at i:73676906 original size:14 final size:14
Alignment explanation
Indices: 73676884--73676944 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 14
73676874 TTACTTATCA
*
73676884 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
73676898 TTATGGTTT-AGAGT
1 TTATGGTTTAAG-GT
* * *
73676912 ATATAGTTTAGGGT
1 TTATGGTTTAAGGT
* *
73676926 TTAGGGTTTAGGGT
1 TTATGGTTTAAGGT
73676940 TTATG
1 TTATG
73676945 ATGAGTTAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
13 2 0.05
14 34 0.92
15 1 0.03
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.48
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:73676941 original size:21 final size:21
Alignment explanation
Indices: 73676888--73676942 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
73676878 TTATCATTAT
*
73676888 AGTTTAAGGTTTATGGTTTAG
1 AGTTTAAGGTTTAGGGTTTAG
*
73676909 AGTATATA-GTTTAGGGTTTAG
1 AGTTTA-AGGTTTAGGGTTTAG
* *
73676930 GGTTTAGGGTTTA
1 AGTTTAAGGTTTA
73676943 TGATGAGTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (21 bp):
AGTTTAAGGTTTAGGGTTTAG
Found at i:73676982 original size:22 final size:22
Alignment explanation
Indices: 73676957--73677014 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
73676947 GAGTTAATAT
*
73676957 TTTAAGGTTTATGAATTATGGG
1 TTTAAGGTTTATGAATTAGGGG
* * **
73676979 TTTAGGGTTTAAGGTTTAGGGG
1 TTTAAGGTTTATGAATTAGGGG
*
73677001 TTTATGGTTTATGA
1 TTTAAGGTTTATGA
73677015 GTTAAAATCT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (22 bp):
TTTAAGGTTTATGAATTAGGGG
Found at i:73677001 original size:15 final size:14
Alignment explanation
Indices: 73676977--73677011 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
73676967 ATGAATTATG
73676977 GGTTTAGGGTTTAA
1 GGTTTAGGGTTTAA
*
73676991 GGTTTAGGGGTTTAT
1 GGTTTA-GGGTTTAA
73677006 GGTTTA
1 GGTTTA
73677012 TGAGTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGTTTAA
Found at i:73677160 original size:15 final size:15
Alignment explanation
Indices: 73677111--73677160 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
73677101 GTTTATGTTT
73677111 TAGGGGTTAAGGGTC
1 TAGGGGTTAAGGGTC
* * *
73677126 TAAGAGTTAAGAGTC
1 TAGGGGTTAAGGGTC
* *
73677141 CAGGGGTTAAGGGTT
1 TAGGGGTTAAGGGTC
73677156 TAGGG
1 TAGGG
73677161 TACATGGTTT
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.26, C:0.06, G:0.42, T:0.26
Consensus pattern (15 bp):
TAGGGGTTAAGGGTC
Found at i:73677416 original size:26 final size:26
Alignment explanation
Indices: 73677387--73677446 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
73677377 TATATATATT
73677387 AAATAATTTAA-AATTTTAAAGATTTC
1 AAAT-ATTTAATAATTTTAAAGATTTC
* *
73677413 AAATTTTTAATAATTTTTAAGATTTC
1 AAATATTTAATAATTTTAAAGATTTC
73677439 AAAT-TTTA
1 AAATATTTA
73677447 TCTAATTCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 9 0.29
26 22 0.71
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (26 bp):
AAATATTTAATAATTTTAAAGATTTC
Found at i:73677453 original size:26 final size:26
Alignment explanation
Indices: 73677393--73677445 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
73677383 TATTAAATAA
73677393 TTTAA-AATTTTAAAGATTTCAAATT
1 TTTAATAATTTTAAAGATTTCAAATT
*
73677418 TTTAATAATTTTTAAGATTTCAAATT
1 TTTAATAATTTTAAAGATTTCAAATT
73677444 TT
1 TT
73677446 ATCTAATTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (26 bp):
TTTAATAATTTTAAAGATTTCAAATT
Found at i:73682023 original size:91 final size:90
Alignment explanation
Indices: 73681911--73682162 Score: 398
Period size: 89 Copynumber: 2.8 Consensus size: 90
73681901 TTTGAAGATA
* * *
73681911 TTATTTTATTTTAATTTAATCACGATAAATATTTTGTCTACTTTAATTTTAATTTTAAATTACCT
1 TTATTTTATTTTATTTTAATCACGA-AAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCT
*
73681976 AATTAAATTAAATTGTATTTAAAGTT
65 AATTAAATTAAATTGTATTTAAAATT
* **
73682002 TTATTTTATTTTATTTTAATCATGAAAA-AAATTGTCTACTTTTATTTTATTTTTAAATTACCTA
1 TTATTTTATTTTATTTTAATCACGAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTA
73682066 ATTAAATTAAATTGTATTTAAAATT
66 ATTAAATTAAATTGTATTTAAAATT
* *
73682091 TTGTTTTATTTTATTTTAAACACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCT
1 TTATTTTATTTTATTTTAATCACG-AAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCT
73682156 AATTAAA
65 AATTAAA
73682163 AATCATTATT
Statistics
Matches: 147, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
89 77 0.52
90 7 0.05
91 63 0.43
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.54
Consensus pattern (90 bp):
TTATTTTATTTTATTTTAATCACGAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTA
ATTAAATTAAATTGTATTTAAAATT
Found at i:73682329 original size:9 final size:9
Alignment explanation
Indices: 73682317--73682674 Score: 149
Period size: 9 Copynumber: 39.4 Consensus size: 9
73682307 CATATCTTAT
73682317 ATAATTTAC
1 ATAATTTAC
*
73682326 ATAACTTAC
1 ATAATTTAC
73682335 ATAA--TAC
1 ATAATTTAC
*
73682342 ATAAATATATAT
1 AT-AAT-T-TAC
73682354 ATCATATCTTAC
1 AT-A-AT-TTAC
73682366 ATAATTTAC
1 ATAATTTAC
** *
73682375 ATAAGATAA
1 ATAATTTAC
73682384 AT-ATCTTAC
1 ATAAT-TTAC
73682393 ATAATTTAC
1 ATAATTTAC
*
73682402 ATAACTTAC
1 ATAATTTAC
*
73682411 ATAATATATAA
1 ATAAT-T-TAC
*
73682422 AT-ATATATC
1 ATAATTTA-C
73682431 AT-ATCTTAC
1 ATAAT-TTAC
73682440 ATAATTTAC
1 ATAATTTAC
** *
73682449 ATAAGATAA
1 ATAATTTAC
*
73682458 ATAACTTAC
1 ATAATTTAC
*
73682467 ATAGTTTAC
1 ATAATTTAC
*
73682476 ATAACTTAC
1 ATAATTTAC
73682485 ATAA--TAC
1 ATAATTTAC
*
73682492 ATAA-TGAC
1 ATAATTTAC
73682500 AT-A--T-C
1 ATAATTTAC
73682505 AT-ATCTTAC
1 ATAAT-TTAC
73682514 ATAATTTAC
1 ATAATTTAC
** *
73682523 ATAAGATAA
1 ATAATTTAC
*
73682532 ATAACTTAC
1 ATAATTTAC
73682541 ATAATTTAC
1 ATAATTTAC
*
73682550 ATAACTTAC
1 ATAATTTAC
73682559 ATAA--TAC
1 ATAATTTAC
73682566 ATAAATATATATC
1 AT-AAT-T-TA-C
73682579 AT-ATCTTAC
1 ATAAT-TTAC
73682588 ATAATTTAC
1 ATAATTTAC
** *
73682597 ATAAGATAA
1 ATAATTTAC
**
73682606 ATACCTTAC
1 ATAATTTAC
73682615 ATAATTTAC
1 ATAATTTAC
*
73682624 ATAACTTAC
1 ATAATTTAC
73682633 ATAA--TAC
1 ATAATTTAC
* *
73682640 ATAAATATAT
1 AT-AATTTAC
73682650 ATTATATCTTAC
1 A-TA-AT-TTAC
73682662 ATAATTTAC
1 ATAATTTAC
73682671 ATAA
1 ATAA
73682675 GATAATCCCT
Statistics
Matches: 266, Mismatches: 51, Indels: 64
0.70 0.13 0.17
Matches are distributed among these distances:
5 4 0.02
7 23 0.09
8 14 0.05
9 169 0.64
10 23 0.09
11 13 0.05
12 14 0.05
13 6 0.02
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.37
Consensus pattern (9 bp):
ATAATTTAC
Found at i:73682466 original size:74 final size:74
Alignment explanation
Indices: 73682312--73682679 Score: 639
Period size: 74 Copynumber: 4.9 Consensus size: 74
73682302 TATATCATAT
*
73682312 CTTATATAATTTACATAACTTACATAATACATAAATATATATATCATATCTTACATAATTTACAT
1 CTTACATAATTTACATAACTTACATAATACAT-AA-ATATATATCATATCTTACATAATTTACAT
*
73682377 AAGATAAATAT
64 AAGATAAATAA
*
73682388 CTTACATAATTTACATAACTTACATAATATATAAATATATATCATATCTTACATAATTTACATAA
1 CTTACATAATTTACATAACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAA
73682453 GATAAATAA
66 GATAAATAA
* *
73682462 CTTACATAGTTTACATAACTTACATAATACAT-AATGACATATCATATCTTACATAATTTACATA
1 CTTACATAATTTACATAACTTACATAATACATAAAT-ATATATCATATCTTACATAATTTACATA
73682526 AGATAAATAA
65 AGATAAATAA
73682536 CTTACATAATTTACATAACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAA
1 CTTACATAATTTACATAACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAA
*
73682601 GATAAATAC
66 GATAAATAA
*
73682610 CTTACATAATTTACATAACTTACATAATACATAAATATATATTATATCTTACATAATTTACATAA
1 CTTACATAATTTACATAACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAA
73682675 GATAA
66 GATAA
73682680 TCCCTTTTAT
Statistics
Matches: 280, Mismatches: 10, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
73 3 0.01
74 242 0.86
75 5 0.02
76 30 0.11
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (74 bp):
CTTACATAATTTACATAACTTACATAATACATAAATATATATCATATCTTACATAATTTACATAA
GATAAATAA
Found at i:73684384 original size:12 final size:12
Alignment explanation
Indices: 73684367--73684392 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73684357 GAAGTCGAGG
73684367 GATGAATCTGAT
1 GATGAATCTGAT
73684379 GATGAATCTGAT
1 GATGAATCTGAT
73684391 GA
1 GA
73684393 AGAGGATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:73687725 original size:13 final size:14
Alignment explanation
Indices: 73687709--73687737 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73687699 TTCTAAATAT
73687709 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
73687722 TTATAATTGTTTAA
1 TTATAATTGTTTAA
73687736 TT
1 TT
73687738 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:73688150 original size:15 final size:15
Alignment explanation
Indices: 73688130--73688159 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
73688120 GCAACAACTT
73688130 AGAGAGAGGCAGCAG
1 AGAGAGAGGCAGCAG
73688145 AGAGAGAGGCAGCAG
1 AGAGAGAGGCAGCAG
73688160 CAGCAGCGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.47, T:0.00
Consensus pattern (15 bp):
AGAGAGAGGCAGCAG
Found at i:73688162 original size:21 final size:20
Alignment explanation
Indices: 73688138--73688198 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 20
73688128 TTAGAGAGAG
*
73688138 GCAGCAGAGAGAGAGGCAGC
1 GCAGCAGAGAGGGAGGCAGC
*
73688158 AGCAGCAGCGAGGGAGGCAGC
1 -GCAGCAGAGAGGGAGGCAGC
*
73688179 GACAGCAGTGAGGGAGGCAG
1 G-CAGCAGAGAGGGAGGCAG
73688199 AGGAAGCAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
20 1 0.03
21 35 0.97
ACGTcount: A:0.31, C:0.20, G:0.48, T:0.02
Consensus pattern (20 bp):
GCAGCAGAGAGGGAGGCAGC
Found at i:73688206 original size:21 final size:21
Alignment explanation
Indices: 73688134--73688207 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 21
73688124 CAACTTAGAG
* *
73688134 AGAGGCAGCAGAGAGAGAGGC
1 AGAGGAAGCAGAGAGGGAGGC
* *
73688155 AGCA-GCAGCAGCGAGGGAGGC
1 AG-AGGAAGCAGAGAGGGAGGC
* *
73688176 AG-CGACAGCAGTGAGGGAGGC
1 AGAGGA-AGCAGAGAGGGAGGC
73688197 AGAGGAAGCAG
1 AGAGGAAGCAG
73688208 CAATGGAAGC
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
20 1 0.02
21 40 0.91
22 3 0.07
ACGTcount: A:0.34, C:0.18, G:0.47, T:0.01
Consensus pattern (21 bp):
AGAGGAAGCAGAGAGGGAGGC
Found at i:73688661 original size:42 final size:42
Alignment explanation
Indices: 73688593--73688726 Score: 164
Period size: 41 Copynumber: 3.2 Consensus size: 42
73688583 GAAAAAATAC
*
73688593 TTTAGCGGCG-TTTTTTCCACAAACGCCGCTAAAAGCCATGACT
1 TTTAGCGGTGCTTTTTT--ACAAACGCCGCTAAAAGCCATGACT
* * * *
73688636 TTTAGTGGTGCTTTTTTACAGACGCCACTAAAAACCATGAC-
1 TTTAGCGGTGCTTTTTTACAAACGCCGCTAAAAGCCATGACT
* * *
73688677 TTTAGCGGTGCTTTTTTTCAAACGCCGCTAAAAGTCATGGCT
1 TTTAGCGGTGCTTTTTTACAAACGCCGCTAAAAGCCATGACT
73688719 TTTAGCGG
1 TTTAGCGG
73688727 CGTTTTTAAA
Statistics
Matches: 77, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
41 34 0.44
42 29 0.38
43 8 0.10
44 6 0.08
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (42 bp):
TTTAGCGGTGCTTTTTTACAAACGCCGCTAAAAGCCATGACT
Found at i:73690093 original size:55 final size:56
Alignment explanation
Indices: 73690028--73690142 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
73690018 AGCATGGCTG
* *
73690028 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
73690084 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
73690139 CCAG
1 CCAG
73690143 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:73690105 original size:27 final size:27
Alignment explanation
Indices: 73690053--73690142 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
73690043 GTGACAGAGT
73690053 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
73690082 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
73690109 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
73690137 CACCAG
1 CACCAG
73690143 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:73690319 original size:28 final size:28
Alignment explanation
Indices: 73690248--73690312 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
73690238 AAATTAACCC
*
73690248 TAGGGGTATAA-AGGTCATTTTGCATACA
1 TAGGGGTATAATA-GTAATTTTGCATACA
73690276 TAGGGGTATAATAGTAATTTTGCATACA
1 TAGGGGTATAATAGTAATTTTGCATACA
73690304 TAGGGGTAT
1 TAGGGGTAT
73690313 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
28 34 0.97
29 1 0.03
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATAGTAATTTTGCATACA
Found at i:73690575 original size:8 final size:8
Alignment explanation
Indices: 73690559--73690590 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
73690549 CCCAAAATAC
73690559 CGGCTTTT
1 CGGCTTTT
*
73690567 CGGCATTT
1 CGGCTTTT
73690575 CGGCTTTT
1 CGGCTTTT
73690583 CGGCTTTT
1 CGGCTTTT
73690591 ACCGATCTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:73697943 original size:27 final size:27
Alignment explanation
Indices: 73697891--73697980 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 27
73697881 GTGACAGAGT
*
73697891 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGGGC
* *
73697920 CACTAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
* **
73697947 CACCAGAATAGATAATTTGTGGCATAGC
1 CACCAGAACAGAT-ATTTGTGGCAGGGC
73697975 CACCAG
1 CACCAG
73697981 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
27 22 0.42
28 24 0.46
29 6 0.12
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.22
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:73698133 original size:28 final size:28
Alignment explanation
Indices: 73698086--73698150 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
73698076 AAATTAACCC
*
73698086 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
73698114 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
73698142 TAGGGGTAT
1 TAGGGGTAT
73698151 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:73698412 original size:8 final size:8
Alignment explanation
Indices: 73698396--73698427 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
73698386 CCCAAAATAC
73698396 CGGCTTTT
1 CGGCTTTT
*
73698404 CGGCATTT
1 CGGCTTTT
73698412 CGGCTTTT
1 CGGCTTTT
73698420 CGGCTTTT
1 CGGCTTTT
73698428 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:73711223 original size:50 final size:48
Alignment explanation
Indices: 73711098--73711226 Score: 170
Period size: 49 Copynumber: 2.6 Consensus size: 48
73711088 TAGGGTATAA
73711098 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCG
** * *
73711146 TGGCCGACACCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATTCG
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-A-AATCG
*
73711197 TGCCGATGCCATGTCCTAGACATGGTCTTA
1 TGCCGATGCCATGTCCCAGACATGGTCTTA
73711227 TACAGACACA
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
48 2 0.03
49 36 0.51
50 27 0.39
51 5 0.07
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCG
Found at i:73712623 original size:30 final size:29
Alignment explanation
Indices: 73712573--73712633 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
73712563 CAAATAGCCG
*
73712573 AAGCTAGTTAGATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
73712602 AAGCTAGTTTAAATTGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
73712632 AA
1 AA
73712634 ACTTCCGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.24
30 22 0.76
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:73713732 original size:46 final size:46
Alignment explanation
Indices: 73713665--73713784 Score: 158
Period size: 46 Copynumber: 2.6 Consensus size: 46
73713655 AGTTGTTATA
73713665 ATGCATGTCCCAGACATGTCTTACACTGGC-TCTCGTC-TCAATGT-C-G
1 ATGCATGTCCCAGACATGTCTTACACTGGCAT-T--TCAT-AATGTGCTG
73713711 ATGCATGTCCCAGACATGTCTTACACTGGCATTTCATAATGTGGCTG
1 ATGCATGTCCCAGACATGTCTTACACTGGCATTTCATAATGT-GCTG
*
73713758 ATGCATGTCCCTGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
73713785 AGCACACACA
Statistics
Matches: 68, Mismatches: 1, Indels: 9
0.87 0.01 0.12
Matches are distributed among these distances:
44 7 0.10
45 1 0.01
46 32 0.47
47 28 0.41
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCATTTCATAATGTGCTG
Found at i:73715813 original size:8 final size:8
Alignment explanation
Indices: 73715800--73715828 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
73715790 AATATTAATA
73715800 ATGATTAT
1 ATGATTAT
73715808 ATGATTAT
1 ATGATTAT
73715816 ATGATTAT
1 ATGATTAT
73715824 ATGAT
1 ATGAT
73715829 GAATAAGTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (8 bp):
ATGATTAT
Found at i:73718705 original size:40 final size:40
Alignment explanation
Indices: 73718648--73718835 Score: 315
Period size: 40 Copynumber: 4.7 Consensus size: 40
73718638 ATTCGGATTG
*
73718648 ATAACCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73718688 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
73718728 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73718768 ATAACCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
73718808 A-AACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
73718836 AGCTAGTAGC
Statistics
Matches: 139, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 26 0.19
40 113 0.81
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:73726922 original size:40 final size:40
Alignment explanation
Indices: 73726721--73726908 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
73726711 ATTCGGATTG
* *
73726721 ATAACCGGGCTAAGTTCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73726761 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73726801 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73726841 ATAACCGGGCTAGGTCCCGAA-GCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73726880 ATAACCGGTCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
73726909 AGCTAGTAGC
Statistics
Matches: 136, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
39 36 0.26
40 100 0.74
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:73726922 original size:79 final size:80
Alignment explanation
Indices: 73726721--73726931 Score: 295
Period size: 80 Copynumber: 2.7 Consensus size: 80
73726711 ATTCGGATTG
*
73726721 ATAACCGGGCTAAGTTCCGAAGGCATTTGTG-TGAGTTACTATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAACCGGGCTAAGTCCCGAAGGC
*
73726785 ATTTGTGCGAGTTATT
65 ATTTGTGCGAGTTACT
* * * *
73726801 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAACCGGGCTAGGTCCCGAA-GCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
73726865 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * *
73726880 ATAACCGGTCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAACCGGGCTAA
73726932 ACTCCGAAGG
Statistics
Matches: 116, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
78 7 0.06
79 54 0.47
80 55 0.47
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:73730235 original size:30 final size:30
Alignment explanation
Indices: 73730201--73730261 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
73730191 AAGTTAATTA
73730201 TAGTTAATGTCTTCAATTGAGATATTTTGG
1 TAGTTAATGTCTTCAATTGAGATATTTTGG
73730231 TAGTTAATGTCTTCAATTGAGATATTTTGG
1 TAGTTAATGTCTTCAATTGAGATATTTTGG
73730261 T
1 T
73730262 TACTTGAGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.07, G:0.20, T:0.48
Consensus pattern (30 bp):
TAGTTAATGTCTTCAATTGAGATATTTTGG
Found at i:73731451 original size:6 final size:6
Alignment explanation
Indices: 73731421--73731514 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
73731411 AAGAAACATT
* * *
73731421 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
73731470 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ACCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
73731515 GTGAATGCAA
Statistics
Matches: 69, Mismatches: 11, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
5 4 0.06
6 56 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:73731479 original size:31 final size:31
Alignment explanation
Indices: 73731442--73731514 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
73731432 AATCAAAATG
* *
73731442 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAACC
*
73731473 AGAATCAGAATCAGTATCAGGTAACAGAACC
1 AGAATCAGAATCAGAATCAGGTAACAGAACC
*
73731504 AAAATCAGAAT
1 AGAATCAGAAT
73731515 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAACC
Found at i:73731679 original size:27 final size:27
Alignment explanation
Indices: 73731631--73731682 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
73731621 GCGAGGCTGC
*
73731631 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
73731658 CAGATATTGTGGCTAGGCCACCAGA
1 CAGATATTGTGACGAAGCCACCAGA
73731683 ATAAATATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:73732047 original size:26 final size:26
Alignment explanation
Indices: 73731989--73732149 Score: 171
Period size: 27 Copynumber: 6.1 Consensus size: 26
73731979 GGGTAAAATG
* * * *
73731989 GTAATTTTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGT-AAACA
73732016 GTAATTCTGTAAATCGAGGGTAAACA
1 GTAATTCTGTAAATCGAGGGTAAACA
* * * * *
73732042 ATAATTTTATAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGT-AAACA
*
73732069 GTAATTCTATAAATCGAGGGTAAACA
1 GTAATTCTGTAAATCGAGGGTAAACA
* *
73732095 GTAATTCTGTCAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGT-AAACA
*
73732122 GTAATTCTGTAAACCGAGGGT-AACA
1 GTAATTCTGTAAATCGAGGGTAAACA
73732147 GTA
1 GTA
73732150 TTTGGTAAAC
Statistics
Matches: 113, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
25 6 0.05
26 44 0.39
27 63 0.56
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (26 bp):
GTAATTCTGTAAATCGAGGGTAAACA
Found at i:73732047 original size:53 final size:53
Alignment explanation
Indices: 73731990--73732144 Score: 229
Period size: 53 Copynumber: 2.9 Consensus size: 53
73731980 GGTAAAATGG
73731990 TAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAACAA
1 TAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAACAA
** * *
73732043 TAATTTTATAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAACAG
1 TAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAACAA
* * * * *
73732096 TAATTCTGTCAATCGAGGGTAAAACGGTAATTCTGTAAACCGAGGGTAA
1 TAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAA
73732145 CAGTATTTGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 90 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.28
Consensus pattern (53 bp):
TAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAACAA
Found at i:73737827 original size:39 final size:40
Alignment explanation
Indices: 73737629--73737813 Score: 279
Period size: 39 Copynumber: 4.7 Consensus size: 40
73737619 ATTCGGATTG
* * *
73737629 ATAACCGGGCTAAGTTCCGAAGGCATTTGTGTGATTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73737669 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73737708 AT-ATCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73737747 ATAACCGGGCTAGGTCCC-AAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
73737786 ATAACC-GGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
73737814 AGCTAGTAGC
Statistics
Matches: 132, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
38 10 0.08
39 107 0.81
40 15 0.11
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:73737833 original size:39 final size:39
Alignment explanation
Indices: 73737629--73737836 Score: 260
Period size: 39 Copynumber: 5.3 Consensus size: 39
73737619 ATTCGGATTG
* * *
73737629 ATAACCGGGCTAAGTTCCGAAGGCATTTGTGTGATTTACT
1 ATAACC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73737669 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
73737708 ATATCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73737747 ATAACCGGGCTAGGTCCC-AAGGCATTTGTGCGAGTTACT
1 ATAACC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73737786 ATAACCGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCT
1 ATAACCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
73737825 ATATCCGGCTAA
1 ATAACCGGCTAA
73737837 ACTCCGAAGG
Statistics
Matches: 148, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 12 0.08
39 123 0.83
40 13 0.09
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (39 bp):
ATAACCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:73737844 original size:117 final size:118
Alignment explanation
Indices: 73737629--73737846 Score: 300
Period size: 117 Copynumber: 1.9 Consensus size: 118
73737619 ATTCGGATTG
* * * *
73737629 ATAACCGGGCTAAGTTCCGAAGGCATTTGTGTGATTTACTATACCGGGCTAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAGGTCCCAAGGCATTTGTGCGAGTTACTATACCGGGCTAAGTCCCGAAGGCAT
* * * *
73737694 TTGTGCGAGTTATTATATCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
66 TTGAGCGAGTTACTATATCCGGCTAACTCCCGAAGGCATTCGTGCGAGTTACT
73737747 ATAACCGGGCT-AGGTCCCAAGGCATTTGTGCGAGTTACTATAACC-GGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGGTCCCAAGGCATTTGTGCGAGTTACTAT-ACCGGGCTAAGTCCCGAAGGCA
*
73737810 TTTGAGCTAG-TAGCTATATCCGGCTAAACT-CCGAAGG
65 TTTGAGCGAGTTA-CTATATCCGGCT-AACTCCCGAAGG
73737847 TACTTGGTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
116 2 0.02
117 69 0.78
118 17 0.19
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (118 bp):
ATAACCGGGCTAAGGTCCCAAGGCATTTGTGCGAGTTACTATACCGGGCTAAGTCCCGAAGGCAT
TTGAGCGAGTTACTATATCCGGCTAACTCCCGAAGGCATTCGTGCGAGTTACT
Found at i:73740807 original size:40 final size:40
Alignment explanation
Indices: 73740605--73740793 Score: 288
Period size: 40 Copynumber: 4.7 Consensus size: 40
73740595 ATTCGGATTG
*
73740605 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73740645 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
73740685 TTATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** * *
73740725 ATAACCGCACTAGGTCCCAAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73740765 ATAACCGGGCTAAGTCTCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
73740794 AGCTAGTAGC
Statistics
Matches: 131, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 131 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:73748803 original size:79 final size:80
Alignment explanation
Indices: 73748649--73748833 Score: 302
Period size: 79 Copynumber: 2.3 Consensus size: 80
73748639 ATTCGGATTG
* *
73748649 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
73748713 TTTGTGCGAGTTATT
66 TTTGTGCGAGTTACT
* *
73748728 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAACCGGGCTAGGTCCCGAA-GCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
73748792 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
*
73748807 ATAACCGGTCTAAGTCCCGAAGGCATT
1 ATAACCGGGCTAAGTCCCGAAGGCATT
73748834 TGAGCTAGTA
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
79 56 0.57
80 42 0.43
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:73748849 original size:40 final size:40
Alignment explanation
Indices: 73748649--73748835 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
73748639 ATTCGGATTG
*
73748649 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73748688 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73748728 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73748768 ATAACCGGGCTAGGTCCCGAA-GCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73748807 ATAACCGGTCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
73748836 AGCTAGTAGC
Statistics
Matches: 136, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 51 0.38
40 85 0.62
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:73748849 original size:79 final size:80
Alignment explanation
Indices: 73748649--73748858 Score: 295
Period size: 79 Copynumber: 2.7 Consensus size: 80
73748639 ATTCGGATTG
73748649 ATAACCGGGCTAAGT-CCGAAGGCATTTGTG-TGAGTTACTATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAACCGGGCTAAGTCCCGAAGGC
*
73748712 ATTTGTGCGAGTTATT
65 ATTTGTGCGAGTTACT
* * * *
73748728 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAACCGGGCTAGGTCCCGAA-GCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
73748792 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * *
73748807 ATAACCGGTCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAACCGGGCTAA
73748859 ACTCCGAAGG
Statistics
Matches: 116, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
78 7 0.06
79 68 0.59
80 41 0.35
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:73752176 original size:30 final size:30
Alignment explanation
Indices: 73752142--73752202 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
73752132 AAGTTAATTA
73752142 TAGTTAATGTCTTCAATTGAGATATTTTGG
1 TAGTTAATGTCTTCAATTGAGATATTTTGG
73752172 TAGTTAATGTCTTCAATTGAGATATTTTGG
1 TAGTTAATGTCTTCAATTGAGATATTTTGG
73752202 T
1 T
73752203 TACTTGAGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.07, G:0.20, T:0.48
Consensus pattern (30 bp):
TAGTTAATGTCTTCAATTGAGATATTTTGG
Found at i:73753399 original size:6 final size:6
Alignment explanation
Indices: 73753369--73753462 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
73753359 AAGAAACATT
* * *
73753369 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
73753418 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ACCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
73753463 GTGAATGCAA
Statistics
Matches: 69, Mismatches: 11, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
5 4 0.06
6 56 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:73753427 original size:31 final size:31
Alignment explanation
Indices: 73753390--73753462 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
73753380 AATCAAAATG
* *
73753390 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAACC
*
73753421 AGAATCAGAATCAGTATCAGGTAACAGAACC
1 AGAATCAGAATCAGAATCAGGTAACAGAACC
*
73753452 AAAATCAGAAT
1 AGAATCAGAAT
73753463 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAACC
Found at i:73753629 original size:27 final size:27
Alignment explanation
Indices: 73753581--73753632 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
73753571 GCGAGGCTGC
*
73753581 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
73753608 CAGATATTGTGGCTAGGCCACCAGA
1 CAGATATTGTGACGAAGCCACCAGA
73753633 ATAAATATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:73753994 original size:54 final size:54
Alignment explanation
Indices: 73753936--73754114 Score: 259
Period size: 54 Copynumber: 3.3 Consensus size: 54
73753926 AACACGCTAG
**
73753936 GGGTAAAATGGTAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGA
* ** *
73753990 GGGTAAAACAATAATTTTATAAATCAAGGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGA
* * * * *
73754044 GGGTAAAACAGTAATTCTGTCAATCGAGGGTAAAACGGTAATTCTGTAAACCGA
1 GGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGA
73754098 GGGTAAAACAGTAATTT
1 GGGTAAAACAGTAATTT
73754115 GGTAAACTAA
Statistics
Matches: 109, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 109 1.00
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (54 bp):
GGGTAAAACAGTAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGA
Found at i:73754048 original size:81 final size:81
Alignment explanation
Indices: 73753936--73754113 Score: 248
Period size: 81 Copynumber: 2.2 Consensus size: 81
73753926 AACACGCTAG
* * *
73753936 GGGTAAAATGGTAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAA
1 GGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAA
* *
73754001 TAATTTTATAAATCAA
66 TAATTCTATAAACCAA
* * **
73754017 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTCAATCGAGGGTAAAACGG
1 GGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAA
* *
73754082 TAATTCTGTAAACCGA
66 TAATTCTATAAACCAA
*
73754098 GGGTAAAACAGTAATT
1 GGGTAAAATAGTAATT
73754114 TGGTAAACTA
Statistics
Matches: 85, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 85 1.00
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.28
Consensus pattern (81 bp):
GGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAA
TAATTCTATAAACCAA
Found at i:73754121 original size:27 final size:27
Alignment explanation
Indices: 73753936--73754113 Score: 221
Period size: 27 Copynumber: 6.6 Consensus size: 27
73753926 AACACGCTAG
** * * *
73753936 GGGTAAAATGGTAATTTTATAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
73753963 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * * *
73753990 GGGTAAAACAATAATTTTATAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
73754017 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
73754044 GGGTAAAACAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
73754071 GGGTAAAACGGTAATTCTGTAAACCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
73754098 GGGTAAAACAGTAATT
1 GGGTAAAACAGTAATT
73754114 TGGTAAACTA
Statistics
Matches: 131, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.28
Consensus pattern (27 bp):
GGGTAAAACAGTAATTCTGTAAATCGA
Found at i:73756686 original size:27 final size:27
Alignment explanation
Indices: 73756653--73756706 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
73756643 TGTCATGTGA
* *
73756653 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
73756680 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
73756707 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:73759625 original size:20 final size:20
Alignment explanation
Indices: 73759595--73759639 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
73759585 CTGTTTTATT
73759595 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
73759614 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
73759634 ATGGGC
1 ATGGGC
73759640 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:73759779 original size:26 final size:27
Alignment explanation
Indices: 73759729--73759779 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
73759719 ATTGTAATAG
* *
73759729 GGCTATGGCCCAGATTAATACTGATAT
1 GGCTAAGGCCCAGATTAACACTGATAT
73759756 GGCTAAGGCCCAG-TTAACACTGAT
1 GGCTAAGGCCCAGATTAACACTGAT
73759780 TTCTGAATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (27 bp):
GGCTAAGGCCCAGATTAACACTGATAT
Found at i:73759800 original size:61 final size:60
Alignment explanation
Indices: 73759660--73759793 Score: 157
Period size: 60 Copynumber: 2.2 Consensus size: 60
73759650 ATATCTCGAC
* * *
73759660 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCAGTATGCTCTGATA
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCAGTATACACTGATA
* *
73759720 TTGTAATAGGGCTATGGCCCAGATTAATACTGATAT-GGCTAAGGCCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGG-CCAGTAT-ACACTGATA
*
73759780 TTCTGAATAGGGCT
1 TTGT-AATAGGGCT
73759794 TAGGCCCTGT
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 4 0.06
60 40 0.62
61 20 0.31
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (60 bp):
TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCAGTATACACTGATA
Found at i:73765262 original size:20 final size:20
Alignment explanation
Indices: 73765232--73765276 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
73765222 CTGTTTTATT
73765232 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
73765251 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
73765271 ATGGGC
1 ATGGGC
73765277 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:73765405 original size:28 final size:28
Alignment explanation
Indices: 73765305--73765410 Score: 76
Period size: 28 Copynumber: 3.7 Consensus size: 28
73765295 ACTTGTAATA
* *
73765305 GGGCTACGGCCCAGATTGATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
73765333 GGGCT-AGG-CCAGTATGCTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG-A---T-TAATACTGAT-AT
*
73765364 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
73765393 GGGCTAAGGCCCAG-TTAA
1 GGGCTAAGGCCCAGATTAA
73765411 CACTAATTTC
Statistics
Matches: 62, Mismatches: 6, Indels: 21
0.70 0.07 0.24
Matches are distributed among these distances:
26 4 0.06
27 7 0.11
28 18 0.29
29 8 0.13
30 4 0.06
31 9 0.15
32 5 0.08
33 3 0.05
34 4 0.06
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:73768008 original size:43 final size:43
Alignment explanation
Indices: 73767947--73768067 Score: 179
Period size: 43 Copynumber: 2.8 Consensus size: 43
73767937 GGTGTTACAA
* * * *
73767947 CCAATGTCCCAGACATGGTCTTCCACGTAATCACAATAAAATT
1 CCAATGTCCCATACATGGTCTTACATGTAATCACAATAAAATG
* *
73767990 CCAATGTTCCATACATGGTCTTACATGTAATCACAATACAATG
1 CCAATGTCCCATACATGGTCTTACATGTAATCACAATAAAATG
*
73768033 CCAATGTCCCATATATGGTCTTACATGTAATCACA
1 CCAATGTCCCATACATGGTCTTACATGTAATCACA
73768068 TCTCGGTAAC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 70 1.00
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.29
Consensus pattern (43 bp):
CCAATGTCCCATACATGGTCTTACATGTAATCACAATAAAATG
Found at i:73769399 original size:21 final size:20
Alignment explanation
Indices: 73769370--73769415 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
73769360 CAAAATGCAA
*
73769370 TCAACCTAACACGAATTAAAT
1 TCAACCTAA-ACAAATTAAAT
*
73769391 TCAAGCTAAACAAATTAAAT
1 TCAACCTAAACAAATTAAAT
73769411 T-AACC
1 TCAACC
73769416 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 3 0.14
20 11 0.50
21 8 0.36
ACGTcount: A:0.50, C:0.22, G:0.04, T:0.24
Consensus pattern (20 bp):
TCAACCTAAACAAATTAAAT
Found at i:73773189 original size:25 final size:24
Alignment explanation
Indices: 73773135--73773190 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 24
73773125 TTAATTAATA
73773135 TAAAATATTAATAATTCAATAAAT
1 TAAAATATTAATAATTCAATAAAT
*
73773159 TGAAAA-ATTAAATAATTGAATAAAAT
1 T-AAAATATT-AATAATTCAAT-AAAT
73773185 TAAAAT
1 TAAAAT
73773191 TTAGGAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 4 0.15
25 18 0.67
26 5 0.19
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.34
Consensus pattern (24 bp):
TAAAATATTAATAATTCAATAAAT
Found at i:73773877 original size:11 final size:10
Alignment explanation
Indices: 73773836--73773875 Score: 64
Period size: 10 Copynumber: 4.0 Consensus size: 10
73773826 TGAGGTCATA
73773836 AAATTATTTT
1 AAATTATTTT
73773846 AATATTATTTT
1 AA-ATTATTTT
73773857 AAATTATTTT
1 AAATTATTTT
73773867 AAATT-TTTT
1 AAATTATTTT
73773876 TTTCGTGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
9 4 0.14
10 15 0.52
11 10 0.34
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
AAATTATTTT
Found at i:73773877 original size:21 final size:21
Alignment explanation
Indices: 73773836--73773876 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
73773826 TGAGGTCATA
73773836 AAATTATTTTAATATTATTTT
1 AAATTATTTTAATATTATTTT
*
73773857 AAATTATTTTAA-ATTTTTTT
1 AAATTATTTTAATATTATTTT
73773877 TTCGTGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
AAATTATTTTAATATTATTTT
Found at i:73779565 original size:20 final size:21
Alignment explanation
Indices: 73779537--73779575 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
73779527 TGAGCCCGTA
73779537 AGCCCATTG-GGCCCAATTTT
1 AGCCCATTGAGGCCCAATTTT
*
73779557 AGCCTATTGAGGCCCAATT
1 AGCCCATTGAGGCCCAATT
73779576 ACTGAAGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (21 bp):
AGCCCATTGAGGCCCAATTTT
Found at i:73788992 original size:49 final size:48
Alignment explanation
Indices: 73788919--73789162 Score: 238
Period size: 49 Copynumber: 4.9 Consensus size: 48
73788909 AGCCGAAGCT
* * *
73788919 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAC
* * *
73788967 AGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGTCCTCACC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCG-AC-CAAC
** * * *
73789018 ATCTAATATACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-AC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAC
* * * * * *
73789065 AGTTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTAGACATGCGACCAATT
1 A----TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA-C
* *
73789118 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
73789163 TCACAATAGT
Statistics
Matches: 158, Mismatches: 29, Indels: 17
0.77 0.14 0.08
Matches are distributed among these distances:
47 2 0.01
48 2 0.01
49 75 0.47
50 39 0.25
51 38 0.24
52 1 0.01
53 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (48 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAC
Found at i:73789153 original size:100 final size:99
Alignment explanation
Indices: 73788931--73789162 Score: 270
Period size: 100 Copynumber: 2.3 Consensus size: 99
73788921 CTGGTACGCA
* * * *
73788931 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
* * * * *
73788996 GTACTACACACGTGTCCTCACCATCTAATATACG
66 GTACTACACACGCGACCTAACCATCCAATACACG
* *
73789030 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
* * ** **
73789094 TTAGTACTAGACATGCGACC-AATTATCCGGTACACG
63 TTAGTACTACACACGCGACCTAACCATCCAATACACG
73789130 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
73789163 TCACAATAGT
Statistics
Matches: 112, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
98 4 0.04
99 30 0.27
100 41 0.37
101 37 0.33
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCCAATACACG
Found at i:73793422 original size:41 final size:42
Alignment explanation
Indices: 73793347--73793458 Score: 120
Period size: 41 Copynumber: 2.7 Consensus size: 42
73793337 TTTCGATGTG
* * **
73793347 TGATTCATGTAAGACCATATTTGGGACATTGGCATC-ACT-TA
1 TGATTCATGTAAGACCATATCTGGGATAGGGGCATCGA-TATA
* *
73793388 TGATTCGTGTAAGACCCTATCTGGGATAGGGGCATCGATATA
1 TGATTCATGTAAGACCATATCTGGGATAGGGGCATCGATATA
* *
73793430 TGATAGCATGTAAGACCTTATCTGGGATA
1 TGAT-TCATGTAAGACCATATCTGGGATA
73793459 TGGCATTTTA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 31 0.53
42 7 0.12
43 21 0.36
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (42 bp):
TGATTCATGTAAGACCATATCTGGGATAGGGGCATCGATATA
Found at i:73805859 original size:21 final size:20
Alignment explanation
Indices: 73805835--73805880 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
73805825 TGAAATGCAA
73805835 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
73805856 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
73805876 T-AACC
1 TCAACC
73805881 ATTCTAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:73807709 original size:18 final size:17
Alignment explanation
Indices: 73807661--73807709 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
73807651 CTTGGCGCAT
*
73807661 TGCAGTAACAATAAATAG
1 TGCAGTAACAGT-AATAG
* *
73807679 TGCAATAATAGTAATCAG
1 TGCAGTAACAGTAAT-AG
73807697 TGCAGTAACAGTA
1 TGCAGTAACAGTA
73807710 TACAAGTCCT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 3 0.12
18 22 0.88
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.24
Consensus pattern (17 bp):
TGCAGTAACAGTAATAG
Found at i:73808071 original size:27 final size:27
Alignment explanation
Indices: 73808029--73808209 Score: 217
Period size: 27 Copynumber: 6.7 Consensus size: 27
73808019 TACATCACAT
* *
73808029 AGGGCAAAA-AAGTCATCTTACCAT-TTA
1 AGGGCAAAACAA-TCATTTTACC-TCATA
73808056 AGGGCAAAACAATCATTTTACCAT-ATA
1 AGGGCAAAACAATCATTTTACC-TCATA
* *
73808083 AGGGAAAAACACTCATTTTACCTCATA
1 AGGGCAAAACAATCATTTTACCTCATA
* * *
73808110 AGGGCAAAACAGTCATCTTACCACA-A
1 AGGGCAAAACAATCATTTTACCTCATA
* *
73808136 AGGGAAAAACATTCATTTTACCTCATA
1 AGGGCAAAACAATCATTTTACCTCATA
73808163 AGGGCAAAACAATCATTTTACCTCATA
1 AGGGCAAAACAATCATTTTACCTCATA
*
73808190 AGGGCAAACCAATCATTTTA
1 AGGGCAAAACAATCATTTTA
73808210 TCATATACAG
Statistics
Matches: 136, Mismatches: 15, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
26 23 0.17
27 111 0.82
28 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.25
Consensus pattern (27 bp):
AGGGCAAAACAATCATTTTACCTCATA
Found at i:73808158 original size:53 final size:54
Alignment explanation
Indices: 73808054--73808209 Score: 233
Period size: 53 Copynumber: 2.9 Consensus size: 54
73808044 TCTTACCATT
* *
73808054 TAAGGGCAAAACAATCATTTTACCATATAAGGGAAAAACACTCATTTTACCTCA
1 TAAGGGCAAAACAATCATTTTACCACATAAGGGAAAAACAATCATTTTACCTCA
* * *
73808108 TAAGGGCAAAACAGTCATCTTACCACA-AAGGGAAAAACATTCATTTTACCTCA
1 TAAGGGCAAAACAATCATTTTACCACATAAGGGAAAAACAATCATTTTACCTCA
* * *
73808161 TAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAACCAATCATTTTA
1 TAAGGGCAAAACAATCATTTTACCACATAAGGGAAAAACAATCATTTTA
73808210 TCATATACAG
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 49 0.54
54 42 0.46
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.25
Consensus pattern (54 bp):
TAAGGGCAAAACAATCATTTTACCACATAAGGGAAAAACAATCATTTTACCTCA
Found at i:73808164 original size:80 final size:81
Alignment explanation
Indices: 73808029--73808197 Score: 252
Period size: 80 Copynumber: 2.1 Consensus size: 81
73808019 TACATCACAT
** *
73808029 AGGGCAAAAAAGTCATCTTACCATTTAAGGGCAAAACAATCATTTTACCATATAAGGGAAAAACA
1 AGGGCAAAAAAGTCATCTTACCATCAAAGGGAAAAACAATCATTTTACCATATAAGGGAAAAACA
*
73808094 CTCATTTTACCTCATA
66 ATCATTTTACCTCATA
* * *
73808110 AGGGCAAAACAGTCATCTTACCA-CAAAGGGAAAAACATTCATTTTACC-TCATAAGGGCAAAAC
1 AGGGCAAAAAAGTCATCTTACCATCAAAGGGAAAAACAATCATTTTACCAT-ATAAGGGAAAAAC
73808173 AATCATTTTACCTCATA
65 AATCATTTTACCTCATA
73808190 AGGGCAAA
1 AGGGCAAA
73808198 CCAATCATTT
Statistics
Matches: 80, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
79 1 0.01
80 57 0.71
81 22 0.28
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.24
Consensus pattern (81 bp):
AGGGCAAAAAAGTCATCTTACCATCAAAGGGAAAAACAATCATTTTACCATATAAGGGAAAAACA
ATCATTTTACCTCATA
Found at i:73815124 original size:27 final size:27
Alignment explanation
Indices: 73815083--73815135 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
73815073 TGTTAATCGA
* * *
73815083 TAAAATGATTGTTTTGCCCTTATGTGC
1 TAAAATGATTATTTTACCCCTATGTGC
73815110 TAAAATGATTATTTTACCCCTATGTG
1 TAAAATGATTATTTTACCCCTATGTG
73815136 ATGTATGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.43
Consensus pattern (27 bp):
TAAAATGATTATTTTACCCCTATGTGC
Found at i:73817790 original size:17 final size:17
Alignment explanation
Indices: 73817768--73817802 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
73817758 CCGACATCAC
73817768 CTTATGAGTTTACATTA
1 CTTATGAGTTTACATTA
*
73817785 CTTATGATTTTACATTA
1 CTTATGAGTTTACATTA
73817802 C
1 C
73817803 GGGGGATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.14, G:0.09, T:0.49
Consensus pattern (17 bp):
CTTATGAGTTTACATTA
Found at i:73817865 original size:71 final size:71
Alignment explanation
Indices: 73817734--73817865 Score: 210
Period size: 71 Copynumber: 1.9 Consensus size: 71
73817724 GTCACTATAA
* ** *
73817734 GGGATTTAGCCTGGACTGGTAATCCCGACATCACCTTATGAGTTTACATTACTTATGATTTTACA
1 GGGATTTAGCCTGGACTGGTAATCCCGACACCACCTTATGAGTTTACATTACGGAGGATTTTACA
73817799 TTACGG
66 TTACGG
* *
73817805 GGGATTTAGCCTGGACTGGTAATCTCGACACCACCTTATGAGTTTACATTACGGGGGATTT
1 GGGATTTAGCCTGGACTGGTAATCCCGACACCACCTTATGAGTTTACATTACGGAGGATTT
73817866 AGCCTGGACT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 55 1.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (71 bp):
GGGATTTAGCCTGGACTGGTAATCCCGACACCACCTTATGAGTTTACATTACGGAGGATTTTACA
TTACGG
Found at i:73829926 original size:17 final size:17
Alignment explanation
Indices: 73829906--73829938 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
73829896 CCATTCAGTC
73829906 CAAAATT-CATATTTTTG
1 CAAAATTACA-ATTTTTG
73829923 CAAAATTACAATTTTT
1 CAAAATTACAATTTTT
73829939 CCCTAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.39, C:0.12, G:0.03, T:0.45
Consensus pattern (17 bp):
CAAAATTACAATTTTTG
Found at i:73831325 original size:18 final size:17
Alignment explanation
Indices: 73831295--73831328 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
73831285 GTTTCGTTTT
73831295 ATTTTTATTTTTTATTC
1 ATTTTTATTTTTTATTC
*
73831312 ATTTTTTTTGTTTTATT
1 ATTTTTATT-TTTTATT
73831329 AATCTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (17 bp):
ATTTTTATTTTTTATTC
Done.